RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy11271
         (78 letters)



>gnl|CDD|201970 pfam01781, Ribosomal_L38e, Ribosomal L38e protein family. 
          Length = 69

 Score = 86.5 bits (215), Expect = 1e-24
 Identities = 49/76 (64%), Positives = 58/76 (76%), Gaps = 7/76 (9%)

Query: 2  PREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEKA 61
          P+EI +IK+FL  ARRKDAKSV IK+N       K   TKFKVRCSR+LYTLV+ D +KA
Sbjct: 1  PKEITDIKDFLEIARRKDAKSVKIKKN-------KKKITKFKVRCSRYLYTLVVADKKKA 53

Query: 62 EKLKQSLPPGLQVKEI 77
          EKLKQSLPP L+V E+
Sbjct: 54 EKLKQSLPPTLKVIEV 69


>gnl|CDD|140208 PTZ00181, PTZ00181, 60S ribosomal protein L38; Provisional.
          Length = 82

 Score = 59.0 bits (142), Expect = 2e-13
 Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 8/73 (10%)

Query: 1  MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
          MPREIK +KEFL    RKDA+ V +K N        P  TKFKVRCSR+LYTLV+ D +K
Sbjct: 1  MPREIKTLKEFLAICSRKDARCVKVKHN--------PSATKFKVRCSRYLYTLVVADKKK 52

Query: 61 AEKLKQSLPPGLQ 73
          A+K+++S+ P ++
Sbjct: 53 ADKIERSIHPSVK 65


>gnl|CDD|226468 COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate
          transport and metabolism].
          Length = 243

 Score = 26.1 bits (58), Expect = 1.9
 Identities = 5/23 (21%), Positives = 11/23 (47%)

Query: 1  MPREIKEIKEFLLKARRKDAKSV 23
          MP  + E++    + RR   + +
Sbjct: 3  MPLSVDELERIAREIRRNIVRML 25


>gnl|CDD|218913 pfam06151, Trehalose_recp, Trehalose receptor.  In Drosophila,
          taste is perceived by gustatory neurons located in
          sensilla distributed on several different appendages
          throughout the body of the animal. This family
          represents the taste receptor sensitive to trehalose.
          Length = 414

 Score = 25.8 bits (57), Expect = 2.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 35 KKPDNTKFKVRCSRFLYTLVI 55
            P++ +F+ R  R LY+L+ 
Sbjct: 47 SDPEDVRFRWRSIRILYSLLF 67


>gnl|CDD|224651 COG1737, RpiR, Transcriptional regulators [Transcription].
          Length = 281

 Score = 24.2 bits (53), Expect = 8.2
 Identities = 7/23 (30%), Positives = 11/23 (47%)

Query: 3   REIKEIKEFLLKARRKDAKSVTI 25
              +EI E    A+ + AK + I
Sbjct: 188 GYTREIVEAAELAKERGAKVIAI 210


>gnl|CDD|217689 pfam03717, PBP_dimer, Penicillin-binding Protein dimerisation
          domain.  This domain is found at the N terminus of
          Class B High Molecular Weight Penicillin-Binding
          Proteins. Its function has not been precisely defined,
          but is strongly implicated in PBP polymerisation. The
          domain forms a largely disordered 'sugar tongs'
          structure.
          Length = 167

 Score = 23.8 bits (52), Expect = 9.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 6  KEIKEFLLKARRKDAKSVTIKRNISK 31
          +EI + L +   K  + V +KRN+S 
Sbjct: 52 EEILKKLKEKDAKSYEPVVLKRNLSP 77


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.314    0.132    0.355 

Gapped
Lambda     K      H
   0.267   0.0772    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,833,526
Number of extensions: 285328
Number of successful extensions: 284
Number of sequences better than 10.0: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 22
Length of query: 78
Length of database: 10,937,602
Length adjustment: 47
Effective length of query: 31
Effective length of database: 8,852,964
Effective search space: 274441884
Effective search space used: 274441884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.1 bits)