RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11271
         (78 letters)



>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 264

 Score = 27.7 bits (60), Expect = 0.12
 Identities = 4/17 (23%), Positives = 12/17 (70%)

Query: 2   PREIKEIKEFLLKARRK 18
            ++ +EI+  ++ AR++
Sbjct: 248 VKKPEEIEALMVAARKQ 264


>d1iwga2 d.58.44.1 (A:135-181,A:274-330) Multidrug efflux
          transporter AcrB pore domain; PN1, PN2, PC1 and PC2
          subdomains {Escherichia coli [TaxId: 562]}
          Length = 104

 Score = 23.8 bits (51), Expect = 2.4
 Identities = 4/17 (23%), Positives = 9/17 (52%)

Query: 59 EKAEKLKQSLPPGLQVK 75
           +  K++   P GL++ 
Sbjct: 82 AELAKMEPFFPSGLKIV 98


>d1hcza2 b.84.2.2 (A:168-230) Cytochrome f, small domain {Turnip
          (Brassica rapa) [TaxId: 3711]}
          Length = 63

 Score = 22.7 bits (49), Expect = 3.4
 Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 51 YTLVITDNEKAEKLKQSLPPGLQ--VKE 76
          Y + I D     ++   +P GL+  V E
Sbjct: 23 YEITIVDASNERQVIDIIPRGLELLVSE 50


>d1vqox1 d.29.1.1 (X:7-88) Ribosomal protein L31e {Archaeon
          Haloarcula marismortui [TaxId: 2238]}
          Length = 82

 Score = 22.0 bits (47), Expect = 9.3
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 2  PREIKEIKEFLLKARRKDAKSVTIKRNISK---NKDKKPDNTKFKVRCSRF 49
           + +  I+E L K    D  +V +  +I++    + +    +K +VR +RF
Sbjct: 21 DKAMILIREHLAKHFSVDEDAVRLDPSINEAAWARGRANTPSKIRVRAARF 71


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.132    0.355 

Gapped
Lambda     K      H
   0.267   0.0698    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 276,243
Number of extensions: 10619
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 16
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (21.9 bits)