Query psy11273
Match_columns 730
No_of_seqs 239 out of 1582
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 22:40:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11273.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11273hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ivx_A Cyclin-T2; transcriptio 100.0 1.7E-48 5.9E-53 395.8 27.9 254 12-266 2-255 (257)
2 3rgf_B Cyclin-C; protein kinas 100.0 1.3E-47 4.6E-52 397.5 16.5 241 1-253 3-245 (285)
3 2pk2_A Cyclin-T1, protein TAT; 100.0 1.6E-46 5.6E-51 401.9 21.4 255 12-267 9-263 (358)
4 2i53_A Cyclin K; cell cycle, t 100.0 1.4E-42 4.8E-47 351.7 23.9 231 12-252 12-253 (258)
5 1zp2_A RNA polymerase II holoe 100.0 3.4E-42 1.2E-46 346.2 12.1 223 5-254 1-224 (235)
6 1jkw_A Cyclin H; cell cycle, c 100.0 4.7E-39 1.6E-43 339.5 20.8 228 5-251 2-262 (323)
7 2b9r_A Human cyclin B1; cell c 100.0 4E-31 1.4E-35 271.5 19.4 201 35-260 32-241 (269)
8 2cch_B Cyclin A2, cyclin-A; co 100.0 4.6E-31 1.6E-35 269.3 19.0 200 37-261 35-243 (260)
9 1c9b_A General transcription f 100.0 1.7E-30 6E-35 255.9 17.7 183 41-248 5-187 (207)
10 3g33_B CCND3 protein; Ser/Thr 100.0 1.8E-30 6.1E-35 272.3 15.9 203 28-250 58-267 (306)
11 1g3n_C V-cyclin; cyclin-depend 100.0 4.2E-30 1.4E-34 261.8 17.8 198 36-252 46-250 (257)
12 2w96_A G1/S-specific cyclin-D1 100.0 1.3E-29 4.4E-34 260.1 17.7 197 36-252 52-259 (271)
13 2f2c_A Cyclin homolog, V-cycli 100.0 1.6E-29 5.5E-34 257.1 17.8 196 33-253 44-251 (254)
14 1ais_B TFB TFIIB, protein (tra 99.9 1.7E-26 5.8E-31 226.0 19.7 184 41-249 9-194 (200)
15 1w98_B Cyclin E, G1/S-specific 99.9 2.3E-26 7.7E-31 238.3 17.0 183 37-249 46-241 (283)
16 1f5q_B Gamma herpesvirus cycli 99.9 8.3E-26 2.8E-30 231.6 19.4 191 34-251 42-243 (252)
17 3k7a_M Transcription initiatio 99.9 5.6E-25 1.9E-29 234.1 4.0 183 42-249 127-321 (345)
18 4bbr_M Transcription initiatio 99.8 9.6E-21 3.3E-25 202.2 9.5 181 42-265 127-319 (345)
19 1ais_B TFB TFIIB, protein (tra 98.1 1.3E-05 4.6E-10 78.1 10.0 91 44-152 108-198 (200)
20 1c9b_A General transcription f 97.5 0.00027 9.3E-09 69.3 9.0 70 44-113 102-171 (207)
21 2pmi_B PHO85 cyclin PHO80, ami 97.3 0.00088 3E-08 70.6 10.9 93 44-154 77-173 (293)
22 4bbr_M Transcription initiatio 95.7 0.0017 5.9E-08 69.4 0.0 72 43-114 234-305 (345)
23 3k7a_M Transcription initiatio 95.7 0.0018 6.2E-08 68.9 0.0 70 44-113 235-304 (345)
24 1zp2_A RNA polymerase II holoe 93.1 0.14 4.9E-06 51.0 6.8 55 45-99 135-189 (235)
25 2b9r_A Human cyclin B1; cell c 92.7 0.25 8.5E-06 50.5 8.0 88 158-249 43-130 (269)
26 2f2c_A Cyclin homolog, V-cycli 91.9 0.35 1.2E-05 48.8 7.8 88 158-249 57-144 (254)
27 1g3n_C V-cyclin; cyclin-depend 91.7 0.29 9.8E-06 49.5 7.1 88 158-249 56-143 (257)
28 2cch_B Cyclin A2, cyclin-A; co 91.6 0.23 7.9E-06 50.3 6.2 88 158-249 44-131 (260)
29 3g33_B CCND3 protein; Ser/Thr 91.6 0.36 1.2E-05 50.5 7.8 88 158-249 76-163 (306)
30 3rgf_B Cyclin-C; protein kinas 91.2 0.31 1.1E-05 50.3 6.8 59 157-216 47-105 (285)
31 2i53_A Cyclin K; cell cycle, t 90.9 0.37 1.3E-05 48.4 6.8 57 44-100 151-211 (258)
32 1jkw_A Cyclin H; cell cycle, c 90.9 0.41 1.4E-05 50.4 7.4 56 158-214 62-119 (323)
33 2ivx_A Cyclin-T2; transcriptio 90.8 0.41 1.4E-05 48.2 7.1 57 156-213 34-90 (257)
34 2w96_A G1/S-specific cyclin-D1 90.6 0.52 1.8E-05 48.0 7.7 88 158-249 62-149 (271)
35 1w98_B Cyclin E, G1/S-specific 90.1 0.61 2.1E-05 48.1 7.7 88 158-249 55-143 (283)
36 2pk2_A Cyclin-T1, protein TAT; 89.0 0.59 2E-05 50.1 6.9 57 156-213 41-97 (358)
37 3h4c_A Transcription factor TF 87.2 15 0.0005 37.4 14.9 66 43-108 14-82 (260)
38 1f5q_B Gamma herpesvirus cycli 86.9 0.96 3.3E-05 46.2 6.6 88 158-249 54-141 (252)
39 3m03_A ORC6, origin recognitio 85.5 1.4 4.9E-05 39.4 6.1 61 48-109 6-71 (95)
40 4ell_A Retinoblastoma-associat 75.7 8.6 0.0003 42.3 9.3 69 43-111 281-352 (411)
41 2r7g_A PP110, retinoblastoma-a 73.0 11 0.00036 40.7 9.0 68 44-111 218-288 (347)
42 2qdj_A Retinoblastoma-associat 70.3 11 0.00038 39.8 8.3 64 48-111 6-73 (304)
43 4elj_A Retinoblastoma-associat 64.5 23 0.00079 41.1 10.0 70 43-112 526-598 (656)
44 4elj_A Retinoblastoma-associat 54.0 30 0.001 40.3 8.5 64 48-112 8-76 (656)
45 2r7g_A PP110, retinoblastoma-a 41.3 3.6E+02 0.012 28.9 18.0 84 131-214 166-278 (347)
46 2pmi_B PHO85 cyclin PHO80, ami 33.3 1.1E+02 0.0036 32.4 8.1 89 155-249 76-167 (293)
47 3m03_A ORC6, origin recognitio 30.7 1.1E+02 0.0036 27.4 6.5 53 191-249 40-92 (95)
48 4a69_A Histone deacetylase 3,; 27.9 5.1E+02 0.018 27.9 12.5 57 193-249 297-367 (376)
No 1
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=1.7e-48 Score=395.79 Aligned_cols=254 Identities=67% Similarity=1.133 Sum_probs=236.7
Q ss_pred CCCcccCHHHHhcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccchhhHHHHHHH
Q psy11273 12 PDRWYFTKEQLENTPSRKCGYDAEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAAL 91 (730)
Q Consensus 12 ~s~WLFT~EQLe~TPSrrdGIs~e~El~lR~~avd~I~eVg~~LkLPq~TlaTAivyFhRFysrkSi~~~d~qLVAAACL 91 (730)
.++||||+|||+++||+.+|++.+.|..+|..+++||.++|..|+|++.|+++|++||||||.++++.++++++||+|||
T Consensus 2 ~~~w~~t~e~l~~~ps~~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL 81 (257)
T 2ivx_A 2 SSRWFFTREQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTAL 81 (257)
T ss_dssp CGGGSCCHHHHHSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHH
T ss_pred CCCeeecHHHHHhChHhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHhcCCH
Q psy11273 92 FLAAKVEEQPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQEQAQEIVVNENVLLQTLGFDVGIEHPHTYVVKCCHLVRASK 171 (730)
Q Consensus 92 FLAcKvEEtprkLrDII~Va~~~l~r~~~~lD~~se~y~~~reeIL~mEr~ILqaL~FDL~V~~P~~FL~rflk~L~~sk 171 (730)
|||||+||++++++||+.+++.+.++..+.++..+..|.+.+++|+.||+.||++|+|+|.+++|+.||.+|++.++.+.
T Consensus 82 ~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~ 161 (257)
T 2ivx_A 82 FLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASK 161 (257)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCH
T ss_pred HHHhccccCCcCHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCc
Confidence 99999999999999999999988887766677778899988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccccccccccCCcHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccccCCCCHHHHHHHHHHHHHHHhcC
Q psy11273 172 DLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQLEQLTEEFLAIFDKC 251 (730)
Q Consensus 172 eL~qlA~~ILnDSL~lT~LcL~y~PS~IAAAAIyLAakllgi~iP~~~eg~~Ww~~fd~~VT~EqLeeIi~EIL~LYe~~ 251 (730)
++.+.||++++++++.+++|++|+|+.||+||||+|+.++|.++|+..++..||..|+.+++.++|++|+.+|+++|+.+
T Consensus 162 ~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i~~~~~~~ 241 (257)
T 2ivx_A 162 DLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQILEKT 241 (257)
T ss_dssp HHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHHHHHHHhC
Confidence 99999999999987558889999999999999999999999999887667889999988999999999999999999999
Q ss_pred ChhHHHHhhcccCCC
Q psy11273 252 PSKLKKRICSISSNQ 266 (730)
Q Consensus 252 ps~Lrkrl~e~s~tq 266 (730)
++.|++ ++.+..+|
T Consensus 242 ~~~l~~-~~~~~~~~ 255 (257)
T 2ivx_A 242 PNRLKK-IRNWRANQ 255 (257)
T ss_dssp HHHHHH-HHHHHHHH
T ss_pred hHHhhH-HHHhhhhc
Confidence 998874 55444443
No 2
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.3e-47 Score=397.46 Aligned_cols=241 Identities=24% Similarity=0.346 Sum_probs=215.2
Q ss_pred CCCCCCCCCCCCCCcccCHHHHhcCCC-ccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccc
Q psy11273 1 MSTNTTQGSHSPDRWYFTKEQLENTPS-RKCGYDAEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFT 79 (730)
Q Consensus 1 Ma~nFw~SS~~~s~WLFT~EQLe~TPS-rrdGIs~e~El~lR~~avd~I~eVg~~LkLPq~TlaTAivyFhRFysrkSi~ 79 (730)
||+|||+|||. ++||||++||.++++ ..+|++.++|..+|..+++||.++|..|+|++.|+++|++||||||.++++.
T Consensus 3 m~~~~w~Ss~~-~~Wlft~~el~~~~~~~~~~l~~~~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~ 81 (285)
T 3rgf_B 3 MAGNFWQSSHY-LQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLK 81 (285)
T ss_dssp TTTCGGGSHHH-HHHSCCHHHHHHHHTTGGGTSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTT
T ss_pred ccchhhccccc-CCcCcCHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCch
Confidence 99999999996 999999999987655 6789999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHhhhcCCCC-CHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCccccCChHH
Q psy11273 80 QFHRNSIATAALFLAAKVEEQPR-KLEHVIRVAQLCLFKNQPPLDPRSEAYQEQAQEIVVNENVLLQTLGFDVGIEHPHT 158 (730)
Q Consensus 80 ~~d~qLVAAACLFLAcKvEEtpr-kLrDII~Va~~~l~r~~~~lD~~se~y~~~reeIL~mEr~ILqaL~FDL~V~~P~~ 158 (730)
++++++||+||||||||+||+++ .++||+.++..+....... ..+..|.+.+++|+.||+.||++|+|+|.+++||.
T Consensus 82 ~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~--~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~ 159 (285)
T 3rgf_B 82 SIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSY--AFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYR 159 (285)
T ss_dssp TSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTT--TCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHH
T ss_pred hcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccccc--cCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHH
Confidence 99999999999999999999988 5899998876543211110 11223455789999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccccccccccCCcHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccccCCCCHHHHH
Q psy11273 159 YVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQLE 238 (730)
Q Consensus 159 FL~rflk~L~~skeL~qlA~~ILnDSL~lT~LcL~y~PS~IAAAAIyLAakllgi~iP~~~eg~~Ww~~fd~~VT~EqLe 238 (730)
||.+|++.++.+.++.+.||+|+++++ .+++|++|+|+.||+||||+|+.++|.+ ...||..+ +++.++|.
T Consensus 160 fL~~~~~~l~~~~~~~~~A~~~l~~sl-~t~~~l~~~Ps~IAaAaiylA~~~~~~~------~~~W~~~~--~~~~~~l~ 230 (285)
T 3rgf_B 160 PLLQYVQDMGQEDMLLPLAWRIVNDTY-RTDLCLLYPPFMIALACLHVACVVQQKD------ARQWFAEL--SVDMEKIL 230 (285)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHT-TSSHHHHSCHHHHHHHHHHHHHHHTTCC------CHHHHHTS--CSCHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHH-ccChhhccCHHHHHHHHHHHHHHHcCCC------hhhHHHHH--CCCHHHHH
Confidence 999999999998999999999999986 6899999999999999999999999864 35799876 68999999
Q ss_pred HHHHHHHHHHhcCCh
Q psy11273 239 QLTEEFLAIFDKCPS 253 (730)
Q Consensus 239 eIi~EIL~LYe~~ps 253 (730)
+|+.+|+++|+.++.
T Consensus 231 ~~~~~il~ly~~~~~ 245 (285)
T 3rgf_B 231 EIIRVILKLYEQWKN 245 (285)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999997654
No 3
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=1.6e-46 Score=401.91 Aligned_cols=255 Identities=65% Similarity=1.064 Sum_probs=239.2
Q ss_pred CCCcccCHHHHhcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccchhhHHHHHHH
Q psy11273 12 PDRWYFTKEQLENTPSRKCGYDAEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAAL 91 (730)
Q Consensus 12 ~s~WLFT~EQLe~TPSrrdGIs~e~El~lR~~avd~I~eVg~~LkLPq~TlaTAivyFhRFysrkSi~~~d~qLVAAACL 91 (730)
.++||||.|||+++||+.+|++.+.|..+|..+++||.++|..|+|++.|+++|++||||||..+++.++++++|++|||
T Consensus 9 ~~~wlft~eeL~~~pS~~dgi~~~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acL 88 (358)
T 2pk2_A 9 NKRWYFTREQLENSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAAL 88 (358)
T ss_dssp CSSSSCCSHHHHTCTTHHHHCCHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHH
T ss_pred CCCceeCHHHHHhChhhhcCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHhcCCH
Q psy11273 92 FLAAKVEEQPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQEQAQEIVVNENVLLQTLGFDVGIEHPHTYVVKCCHLVRASK 171 (730)
Q Consensus 92 FLAcKvEEtprkLrDII~Va~~~l~r~~~~lD~~se~y~~~reeIL~mEr~ILqaL~FDL~V~~P~~FL~rflk~L~~sk 171 (730)
|||||+||++++++||+.+++.+.++..+.++..+..|.+.+++|+.||+.||++|+|+|.+++|+.||.+|++.++.+.
T Consensus 89 fLA~K~EE~p~~l~d~v~v~~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~~ 168 (358)
T 2pk2_A 89 FLAAKVEEQPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASK 168 (358)
T ss_dssp HHHHHHTTCCCCHHHHHTTHHHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCCH
T ss_pred HHHHhhccCCCCHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCCH
Confidence 99999999999999999999988877766677778889888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccccccccccCCcHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccccCCCCHHHHHHHHHHHHHHHhcC
Q psy11273 172 DLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQLEQLTEEFLAIFDKC 251 (730)
Q Consensus 172 eL~qlA~~ILnDSL~lT~LcL~y~PS~IAAAAIyLAakllgi~iP~~~eg~~Ww~~fd~~VT~EqLeeIi~EIL~LYe~~ 251 (730)
++.++||+|++++++.+++|+.|+|+.||+||||+|+.++|..+|+..++..||..|+.+++.++|++|+.+|+++|+.+
T Consensus 169 ~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l~~i~~~il~~y~~~ 248 (358)
T 2pk2_A 169 DLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFLQILEKT 248 (358)
T ss_dssp HHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHHHHHHHHHHHHHHhC
Confidence 99999999999987568899999999999999999999999999887667889999988999999999999999999999
Q ss_pred ChhHHHHhhcccCCCC
Q psy11273 252 PSKLKKRICSISSNQN 267 (730)
Q Consensus 252 ps~Lrkrl~e~s~tqs 267 (730)
+..|+ ++..+..++.
T Consensus 249 ~~~L~-~i~~~~~~~~ 263 (358)
T 2pk2_A 249 PNRLK-RIWNWRACEA 263 (358)
T ss_dssp TTHHH-HHHHTTTTTC
T ss_pred ccccc-chhcccchhc
Confidence 99887 5777766544
No 4
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.4e-42 Score=351.75 Aligned_cols=231 Identities=33% Similarity=0.605 Sum_probs=209.1
Q ss_pred CCCcccCHHHHhcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccchhhHHHHHHH
Q psy11273 12 PDRWYFTKEQLENTPSRKCGYDAEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAAL 91 (730)
Q Consensus 12 ~s~WLFT~EQLe~TPSrrdGIs~e~El~lR~~avd~I~eVg~~LkLPq~TlaTAivyFhRFysrkSi~~~d~qLVAAACL 91 (730)
.++|||+++||+++||+.+|++.+.|..+|..+++||.++|..|+|++.|+++|++||||||.++++.++++++||+|||
T Consensus 12 ~~~w~~~~~el~~~ps~~~~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL 91 (258)
T 2i53_A 12 KPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCL 91 (258)
T ss_dssp SSSCCCCGGGGGGCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHH
T ss_pred ccCCccCHHHHHhCchhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCHHHHHHHHHHhhccCCCCCCCCchHHH----HHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHh
Q psy11273 92 FLAAKVEEQPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQ----EQAQEIVVNENVLLQTLGFDVGIEHPHTYVVKCCHLV 167 (730)
Q Consensus 92 FLAcKvEEtprkLrDII~Va~~~l~r~~~~lD~~se~y~----~~reeIL~mEr~ILqaL~FDL~V~~P~~FL~rflk~L 167 (730)
|||||+||++++++||+.+++.++. +..|. +.+++|+.||+.||++|+|++.+++|+.||.+|++.+
T Consensus 92 ~lA~K~eE~~~~l~d~~~~~~~~~~---------~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l 162 (258)
T 2i53_A 92 FLAGKVEETPKKCKDIIKTARSLLN---------DVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQL 162 (258)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHSC---------HHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTB
T ss_pred HHHHccccccccHHHHHHHHHHHhc---------hhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHh
Confidence 9999999999999999998765432 11221 1478999999999999999999999999999999998
Q ss_pred cCCH----HHHHHHHHHHHccccccccccCCcHHHHHHHHHHHHHHHcCCCCCCCC---CCCcccccccCCCCHHHHHHH
Q psy11273 168 RASK----DLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANWEIPQSN---EGRKWFWYIDKEVTQEQLEQL 240 (730)
Q Consensus 168 ~~sk----eL~qlA~~ILnDSL~lT~LcL~y~PS~IAAAAIyLAakllgi~iP~~~---eg~~Ww~~fd~~VT~EqLeeI 240 (730)
+.+. ++.+.||+++++++ .+++|++|+|+.||+||||+|+.++|.++++.. ....||..|..+++.++|++|
T Consensus 163 ~~~~~~~~~~~~~A~~l~~~s~-~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~ 241 (258)
T 2i53_A 163 KGDKNKIQKLVQMAWTFVNDSL-CTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDI 241 (258)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHT-TTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHH-cCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHH
Confidence 8765 68999999999886 689999999999999999999999998876532 346799988889999999999
Q ss_pred HHHHHHHHhcCC
Q psy11273 241 TEEFLAIFDKCP 252 (730)
Q Consensus 241 i~EIL~LYe~~p 252 (730)
+.+|+++|+...
T Consensus 242 ~~~il~ly~~~~ 253 (258)
T 2i53_A 242 CHQILDLYSQGK 253 (258)
T ss_dssp HHHHHTTTSSSC
T ss_pred HHHHHHHHhccc
Confidence 999999998654
No 5
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-42 Score=346.21 Aligned_cols=223 Identities=16% Similarity=0.207 Sum_probs=197.2
Q ss_pred CCCCCCCCCCcccCHHHHhcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcccc-chh
Q psy11273 5 TTQGSHSPDRWYFTKEQLENTPSRKCGYDAEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQ-FHR 83 (730)
Q Consensus 5 Fw~SS~~~s~WLFT~EQLe~TPSrrdGIs~e~El~lR~~avd~I~eVg~~LkLPq~TlaTAivyFhRFysrkSi~~-~d~ 83 (730)
||+|||. .+||||++||+++++..++ + |..+++||.++|..|+|++.|+++|++||||||.++++.+ +++
T Consensus 1 ~~~Ss~~-~~w~ft~~~l~~~~~~~~~-----~---R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~ 71 (235)
T 1zp2_A 1 YWASSQL-TQLFLSTDLESLEPTCLSK-----D---TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSL 71 (235)
T ss_dssp -CCCGGG-TGGGSCSSCTTSSCCCSCH-----H---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCH
T ss_pred CCccCCC-CCCccCHHHHHHCCcchhH-----H---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCH
Confidence 8999997 9999999999988876542 2 9999999999999999999999999999999999999999 999
Q ss_pred hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHH
Q psy11273 84 NSIATAALFLAAKVEEQPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQEQAQEIVVNENVLLQTLGFDVGIEHPHTYVVKC 163 (730)
Q Consensus 84 qLVAAACLFLAcKvEEtprkLrDII~Va~~~l~r~~~~lD~~se~y~~~reeIL~mEr~ILqaL~FDL~V~~P~~FL~rf 163 (730)
++||+||||||||+||++++++||+.+++.+.. +.|.+.+++|+.||+.||++|+|++.+++|+.||.+|
T Consensus 72 ~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~----------~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~ 141 (235)
T 1zp2_A 72 EALVATCIYLSCKVEECPVHIRTICNEANDLWS----------LKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQA 141 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCC----------CSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCcccHHHHHHHHHHHcc----------chhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHH
Confidence 999999999999999999999999988765421 1123357899999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHccccccccccCCcHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccccCCCCHHHHHHHHHH
Q psy11273 164 CHLVRASKDLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQLEQLTEE 243 (730)
Q Consensus 164 lk~L~~skeL~qlA~~ILnDSL~lT~LcL~y~PS~IAAAAIyLAakllgi~iP~~~eg~~Ww~~fd~~VT~EqLeeIi~E 243 (730)
++.++.+.++.+.||+++++++ .+++|++|+|++||+||||+|+.++|..+|. ...||. +++.++|.+|+.+
T Consensus 142 ~~~~~~~~~~~~~A~~~l~~s~-~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~---~~~~~~----~~~~~~i~~~~~~ 213 (235)
T 1zp2_A 142 FHDGIINQKQLEFAWSIVNDSY-ASSLCLMAHPHQLAYAALLISCCNDENTIPK---LLDLIK----STDAFKVILCVQR 213 (235)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHT-TTTGGGTSCHHHHHHHHHHHHHTSCTTHHHH---HHHHCC----HHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHH-cCCchhccCHHHHHHHHHHHHHHhcCCCCCC---Ccchhh----cCCHHHHHHHHHH
Confidence 9999889999999999999975 7999999999999999999999998765431 123553 7899999999999
Q ss_pred HHHHHhcCChh
Q psy11273 244 FLAIFDKCPSK 254 (730)
Q Consensus 244 IL~LYe~~ps~ 254 (730)
|+++|......
T Consensus 214 i~~ly~~~~~~ 224 (235)
T 1zp2_A 214 IISIYYFEDIE 224 (235)
T ss_dssp HHHHHTSSSHH
T ss_pred HHHHHhhCCcC
Confidence 99999987654
No 6
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=100.00 E-value=4.7e-39 Score=339.50 Aligned_cols=228 Identities=18% Similarity=0.260 Sum_probs=190.6
Q ss_pred CCCCCCCCCCcccCH-HHHhcC-------------------CCccCCCCHHHHHHHHHHHHHHHHHHHHHcC--CCHHHH
Q psy11273 5 TTQGSHSPDRWYFTK-EQLENT-------------------PSRKCGYDAEKELSCRQQAANLIQDMGQRLQ--VTQLCI 62 (730)
Q Consensus 5 Fw~SS~~~s~WLFT~-EQLe~T-------------------PSrrdGIs~e~El~lR~~avd~I~eVg~~Lk--LPq~Tl 62 (730)
||+|||. .+|+||. ++|... ++..+|++.++|..+|..+++||.++|..|+ |++.|+
T Consensus 2 y~~Stq~-~~W~f~~~~~L~~~r~~~n~~~~~~~~~~~~~~~~~~~~lt~eeE~~lr~~~~~~I~ev~~~l~~~Lp~~t~ 80 (323)
T 1jkw_A 2 YHNSSQK-RHWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVV 80 (323)
T ss_dssp ----------CCCSCHHHHHHHHHHHHHHHHHHHHHTSSSCTTCTTSCCHHHHHHHHHHHHHHHHHHHHHCTTTCCHHHH
T ss_pred CCCCccc-cccccCCHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 9999997 9999996 777532 4678999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHhhcCccccchhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHH
Q psy11273 63 NTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQEQAQEIVVNENV 142 (730)
Q Consensus 63 aTAivyFhRFysrkSi~~~d~qLVAAACLFLAcKvEEtprkLrDII~Va~~~l~r~~~~lD~~se~y~~~reeIL~mEr~ 142 (730)
++|++||||||..+++.++++++||+||||||||+||+++++++|+.++. . + ...+.+++++|+.||+.
T Consensus 81 ~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~-----~----~--p~~~~~~~~~Il~~E~~ 149 (323)
T 1jkw_A 81 GTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLR-----E----S--PLGQEKALEQILEYELL 149 (323)
T ss_dssp HHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSS-----S----C--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhc-----c----C--hhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999875321 0 1 11234578999999999
Q ss_pred HHHHcCCccccCChHHHHHHHHHHhc-------CCHHHHHHHHHHHHccccccccccCCcHHHHHHHHHHHHHHHcCCCC
Q psy11273 143 LLQTLGFDVGIEHPHTYVVKCCHLVR-------ASKDLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANWEI 215 (730)
Q Consensus 143 ILqaL~FDL~V~~P~~FL~rflk~L~-------~skeL~qlA~~ILnDSL~lT~LcL~y~PS~IAAAAIyLAakllgi~i 215 (730)
||++|+|+|.+++||.||.+|+..+. ....+.+.||+|+++++ .+++|+.|+|++||+||||+|+..+|..+
T Consensus 150 iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl-~t~~~l~~~Ps~IAaAai~lA~~~~~~~~ 228 (323)
T 1jkw_A 150 LIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIA-LTDAYLLYTPSQIALTAILSSASRAGITM 228 (323)
T ss_dssp HHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHT-TSTHHHHSCHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH-hccHHHcCCHHHHHHHHHHHHHHHcCCCh
Confidence 99999999999999999999997652 23578899999999876 78999999999999999999999999765
Q ss_pred CCCCCCCccccc-cc---CCCCHHHHHHHHHHHHHHHhcC
Q psy11273 216 PQSNEGRKWFWY-ID---KEVTQEQLEQLTEEFLAIFDKC 251 (730)
Q Consensus 216 P~~~eg~~Ww~~-fd---~~VT~EqLeeIi~EIL~LYe~~ 251 (730)
+ .|+.. |. .+++.++|.+++.+|..+|...
T Consensus 229 ~------~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~~ 262 (323)
T 1jkw_A 229 E------SYLSESLMLKENRTCLSQLLDIMKSMRNLVKKY 262 (323)
T ss_dssp T------THHHHHTTSCSSSCCTHHHHHHHHHHHHHHHTC
T ss_pred H------HHHHHHhccccccccHHHHHHHHHHHHHHHHcc
Confidence 4 38763 33 4578899999999999999875
No 7
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.97 E-value=4e-31 Score=271.51 Aligned_cols=201 Identities=15% Similarity=0.206 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccchhhHHHHHHHHHHhhhcCC-CCCHHHHHHHHHH
Q psy11273 35 EKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKVEEQ-PRKLEHVIRVAQL 113 (730)
Q Consensus 35 e~El~lR~~avd~I~eVg~~LkLPq~TlaTAivyFhRFysrkSi~~~d~qLVAAACLFLAcKvEEt-prkLrDII~Va~~ 113 (730)
+....+|..+++||.++|..|+|+++|+++|++|||||+...++.+.+++++|+||||||||+||. ++.++|++.++..
T Consensus 32 ~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~ 111 (269)
T 2b9r_A 32 EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDN 111 (269)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcC
Confidence 344579999999999999999999999999999999999999999999999999999999999997 7889999865422
Q ss_pred hhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHhcCCHHHHHHHHHHHHccccccccccC
Q psy11273 114 CLFKNQPPLDPRSEAYQEQAQEIVVNENVLLQTLGFDVGIEHPHTYVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCLQ 193 (730)
Q Consensus 114 ~l~r~~~~lD~~se~y~~~reeIL~mEr~ILqaL~FDL~V~~P~~FL~rflk~L~~skeL~qlA~~ILnDSL~lT~LcL~ 193 (730)
.+.+++|++||+.||++|+|++.+++|++||.+|+..++.+.++.++||+++++++ .+..+++
T Consensus 112 ----------------~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~~~~~a~~l~e~sl-~~~~~~~ 174 (269)
T 2b9r_A 112 ----------------TYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELTM-LDYDMVH 174 (269)
T ss_dssp ----------------SSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHGG-GCGGGSS
T ss_pred ----------------CCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-hhhhhhc
Confidence 12478999999999999999999999999999999998888899999999998876 5778899
Q ss_pred CcHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccc--cCCCCHHHHHHHHHHHHHHHhcCC------hhHHHHhh
Q psy11273 194 YRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYI--DKEVTQEQLEQLTEEFLAIFDKCP------SKLKKRIC 260 (730)
Q Consensus 194 y~PS~IAAAAIyLAakllgi~iP~~~eg~~Ww~~f--d~~VT~EqLeeIi~EIL~LYe~~p------s~Lrkrl~ 260 (730)
|+|+.||+||||+|+.++|.. .|+..+ ..+++.++|.+|+..|+++|.... ..++++|.
T Consensus 175 ~~Ps~iAaAai~lA~~~l~~~--------~w~~~l~~~tg~~~~~l~~~~~~l~~~~~~~~~~~~~~~ai~~Ky~ 241 (269)
T 2b9r_A 175 FPPSQIAAGAFSLALKILDNG--------EWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLTKHMTVKNKYA 241 (269)
T ss_dssp SCTTHHHHHHHHHHHHHHTCC--------CSCTTHHHHSCCCSSTTTTHHHHHHHHHHHTTTSCCSCCHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhCCC--------CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHhc
Confidence 999999999999999998742 477643 568999999999999999987543 23556654
No 8
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.97 E-value=4.6e-31 Score=269.30 Aligned_cols=200 Identities=19% Similarity=0.298 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccchhhHHHHHHHHHHhhhcCC-CCCHHHHHHHHHHhh
Q psy11273 37 ELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKVEEQ-PRKLEHVIRVAQLCL 115 (730)
Q Consensus 37 El~lR~~avd~I~eVg~~LkLPq~TlaTAivyFhRFysrkSi~~~d~qLVAAACLFLAcKvEEt-prkLrDII~Va~~~l 115 (730)
...+|..+++||.++|..|+|+++|+++|++|||||+...++.+.+++++|+||||||||+||. ++.++|++.++..
T Consensus 35 ~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~-- 112 (260)
T 2cch_B 35 TNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDD-- 112 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTS--
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcC--
Confidence 3579999999999999999999999999999999999999999999999999999999999998 8899999875422
Q ss_pred ccCCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHhcCCH-HHHHHHHHHHHcccccccc-ccC
Q psy11273 116 FKNQPPLDPRSEAYQEQAQEIVVNENVLLQTLGFDVGIEHPHTYVVKCCHLVRASK-DLAQTSYFMASNSLHLTTM-CLQ 193 (730)
Q Consensus 116 ~r~~~~lD~~se~y~~~reeIL~mEr~ILqaL~FDL~V~~P~~FL~rflk~L~~sk-eL~qlA~~ILnDSL~lT~L-cL~ 193 (730)
.+.+++|++||+.||++|+|++.+++|+.||.+|+..++.+. ++.++||+++++++. +.. |++
T Consensus 113 --------------~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~-~~~~~~~ 177 (260)
T 2cch_B 113 --------------TYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLI-DADPYLK 177 (260)
T ss_dssp --------------SSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-CHHHHTT
T ss_pred --------------CcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH-hHHHHhC
Confidence 124789999999999999999999999999999999988654 899999999987653 444 899
Q ss_pred CcHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccc--cCCCCHHHHHHHHHHHHHHHhcCC----hhHHHHhhc
Q psy11273 194 YRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYI--DKEVTQEQLEQLTEEFLAIFDKCP----SKLKKRICS 261 (730)
Q Consensus 194 y~PS~IAAAAIyLAakllgi~iP~~~eg~~Ww~~f--d~~VT~EqLeeIi~EIL~LYe~~p----s~Lrkrl~e 261 (730)
|+|+.||+||||+|+..+|. ..|+..+ ..+++.++|.+|+.+|.++|...+ ..+++++..
T Consensus 178 ~~Ps~iAaAai~lA~~~~~~--------~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~~~~~~~i~~Ky~~ 243 (260)
T 2cch_B 178 YLPSVIAGAAFHLALYTVTG--------QSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKN 243 (260)
T ss_dssp SCHHHHHHHHHHHHHHHHHS--------CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGGGSSCCHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHHHhCC--------CcchHHHHHHhCcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHCc
Confidence 99999999999999999873 4587654 458999999999999999997432 345555543
No 9
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.97 E-value=1.7e-30 Score=255.91 Aligned_cols=183 Identities=16% Similarity=0.199 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccchhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHhhccCCC
Q psy11273 41 RQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQLCLFKNQP 120 (730)
Q Consensus 41 R~~avd~I~eVg~~LkLPq~TlaTAivyFhRFysrkSi~~~d~qLVAAACLFLAcKvEEtprkLrDII~Va~~~l~r~~~ 120 (730)
.++++++|.++|..|+|++.|+++|++||+|||..++++++++++|++||||||||+||.+++++||+.+++.
T Consensus 5 l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~~------- 77 (207)
T 1c9b_A 5 MMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRI------- 77 (207)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSSS-------
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHCC-------
Confidence 4589999999999999999999999999999999999999999999999999999999999999999876541
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHhcCCHHHHHHHHHHHHccccccccccCCcHHHHH
Q psy11273 121 PLDPRSEAYQEQAQEIVVNENVLLQTLGFDVGIEHPHTYVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCLQYRSTVVA 200 (730)
Q Consensus 121 ~lD~~se~y~~~reeIL~mEr~ILqaL~FDL~V~~P~~FL~rflk~L~~skeL~qlA~~ILnDSL~lT~LcL~y~PS~IA 200 (730)
...+|..+|+.||+.|+|++.+.+|+.||.+|++.|+.+.++.+.||+++++++ .++++++|+|++||
T Consensus 78 -----------~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~-~~~l~~g~~P~~IA 145 (207)
T 1c9b_A 78 -----------SKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAV-ELDLVPGRSPISVA 145 (207)
T ss_dssp -----------CHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-HTTCSTTCCHHHHH
T ss_pred -----------CHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HcCccCCCChHHHH
Confidence 245788999999999999999999999999999999999999999999998875 68999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCcccccccCCCCHHHHHHHHHHHHHHH
Q psy11273 201 CFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQLEQLTEEFLAIF 248 (730)
Q Consensus 201 AAAIyLAakllgi~iP~~~eg~~Ww~~fd~~VT~EqLeeIi~EIL~LY 248 (730)
+||||+|++++|...+. ..|+.. .++++.+|.++..+|++..
T Consensus 146 aAaiylA~~~~~~~~~~----~~i~~~--~~v~~~tI~~~~~~l~~~l 187 (207)
T 1c9b_A 146 AAAIYMASQASAEKRTQ----KEIGDI--AGVADVTIRQSYRLIYPRA 187 (207)
T ss_dssp HHHHHHHHHTSSSCCCH----HHHHHH--HTCCHHHHHHHHHHHGGGH
T ss_pred HHHHHHHHHHHCCCCCH----HHHHHH--hCCCHHHHHHHHHHHHHHH
Confidence 99999999999865432 235443 4688888888887776544
No 10
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=272.31 Aligned_cols=203 Identities=13% Similarity=0.113 Sum_probs=170.7
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccchhhHHHHHHHHHHhhhcCC-CCCHHH
Q psy11273 28 RKCGYDAEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKVEEQ-PRKLEH 106 (730)
Q Consensus 28 rrdGIs~e~El~lR~~avd~I~eVg~~LkLPq~TlaTAivyFhRFysrkSi~~~d~qLVAAACLFLAcKvEEt-prkLrD 106 (730)
...++..+.+..+|..+++||.++|..|+|++.|+++|++|||||+.++.+...++++||+||||||||+||. +..+++
T Consensus 58 y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~ 137 (306)
T 3g33_B 58 YFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEK 137 (306)
T ss_dssp CTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTH
T ss_pred HHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHH
Confidence 3445555666789999999999999999999999999999999999999999999999999999999999985 668888
Q ss_pred HHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHhcCCH----HHHHHHHHHHH
Q psy11273 107 VIRVAQLCLFKNQPPLDPRSEAYQEQAQEIVVNENVLLQTLGFDVGIEHPHTYVVKCCHLVRASK----DLAQTSYFMAS 182 (730)
Q Consensus 107 II~Va~~~l~r~~~~lD~~se~y~~~reeIL~mEr~ILqaL~FDL~V~~P~~FL~rflk~L~~sk----eL~qlA~~ILn 182 (730)
++.++.. .+.+++|++||+.||++|+|+|.+++|+.||.+|++.++... .+.+.|++|++
T Consensus 138 l~~~~~~----------------~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~ 201 (306)
T 3g33_B 138 LCIYTDH----------------AVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLA 201 (306)
T ss_dssp HHHHTTT----------------SSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHH
T ss_pred HHHHhcc----------------CccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Confidence 8765432 134789999999999999999999999999999999886542 26678999998
Q ss_pred ccccccccccCCcHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccc--cCCCCHHHHHHHHHHHHHHHhc
Q psy11273 183 NSLHLTTMCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYI--DKEVTQEQLEQLTEEFLAIFDK 250 (730)
Q Consensus 183 DSL~lT~LcL~y~PS~IAAAAIyLAakllgi~iP~~~eg~~Ww~~f--d~~VT~EqLeeIi~EIL~LYe~ 250 (730)
.++ .+..|+.|.|+.||+|||++|+..++.... ....|+..+ ..+++.++|.+|+..|+++|..
T Consensus 202 lsl-~d~~~l~~~PS~IAaAai~lA~~~l~~~~~---w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l~~~ 267 (306)
T 3g33_B 202 LCA-TDYTFAMYPPSMIATGSIGAAVQGLGACSM---SGDELTELLAGITGTEVDCLRACQEQIEAALRE 267 (306)
T ss_dssp HHH-HCGGGTTSCHHHHHHHHHHHHHHTCC---C---CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred HHH-hhhhhccCCHHHHHHHHHHHHHHHhcCCCC---chhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 765 578899999999999999999999873211 012344433 5579999999999999999985
No 11
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.97 E-value=4.2e-30 Score=261.84 Aligned_cols=198 Identities=11% Similarity=0.082 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccchhhHHHHHHHHHHhhhcCC-CCCHHHHHHHHHHh
Q psy11273 36 KELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKVEEQ-PRKLEHVIRVAQLC 114 (730)
Q Consensus 36 ~El~lR~~avd~I~eVg~~LkLPq~TlaTAivyFhRFysrkSi~~~d~qLVAAACLFLAcKvEEt-prkLrDII~Va~~~ 114 (730)
....+|..+++||.++|..|+|..+|+++|++|||||+..+++.+.+++++|+||||||||+||. +..++|++.++..
T Consensus 46 i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~- 124 (257)
T 1g3n_C 46 LTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAAD- 124 (257)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTT-
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCC-
Confidence 34579999999999999999999999999999999999999999999999999999999999996 8899998765432
Q ss_pred hccCCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHhcCCHH----HHHHHHHHHHcccccccc
Q psy11273 115 LFKNQPPLDPRSEAYQEQAQEIVVNENVLLQTLGFDVGIEHPHTYVVKCCHLVRASKD----LAQTSYFMASNSLHLTTM 190 (730)
Q Consensus 115 l~r~~~~lD~~se~y~~~reeIL~mEr~ILqaL~FDL~V~~P~~FL~rflk~L~~ske----L~qlA~~ILnDSL~lT~L 190 (730)
.+.+++|++||+.||++|+|++.+++|+.||.+|++.++.+.+ +.+.|+++++.++ .+..
T Consensus 125 ---------------~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l-~d~~ 188 (257)
T 1g3n_C 125 ---------------SFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKAL-VDPL 188 (257)
T ss_dssp ---------------CSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHH-TSTT
T ss_pred ---------------CCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH-hCcc
Confidence 1247899999999999999999999999999999999876432 4678999988776 5777
Q ss_pred ccCCcHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccc--cCCCCHHHHHHHHHHHHHHHhcCC
Q psy11273 191 CLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYI--DKEVTQEQLEQLTEEFLAIFDKCP 252 (730)
Q Consensus 191 cL~y~PS~IAAAAIyLAakllgi~iP~~~eg~~Ww~~f--d~~VT~EqLeeIi~EIL~LYe~~p 252 (730)
|++|+|+.||+|||++|+..+|...+ .....|+..+ ..+++.++|.+|++.|.++|...+
T Consensus 189 ~~~~~PS~iAaAai~lA~~~l~~~~~--~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~l~~~~~ 250 (257)
T 1g3n_C 189 TGSLPASIISAAGCALLVPANVIPQD--THSGGVVPQLASILGCDVSVLQAAVEQILTSVSDFD 250 (257)
T ss_dssp GGGSCHHHHHHHHHHHHCCGGGSCC-------CHHHHHHHHHTCCHHHHHHHHHHHHHHHHHCC
T ss_pred hhCcCHHHHHHHHHHHHHHHhCCCcc--cchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999998875321 1124466543 357999999999999999998654
No 12
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.96 E-value=1.3e-29 Score=260.08 Aligned_cols=197 Identities=14% Similarity=0.219 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccchhhHHHHHHHHHHhhhcCC-CCCHHHHHHHHHHh
Q psy11273 36 KELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKVEEQ-PRKLEHVIRVAQLC 114 (730)
Q Consensus 36 ~El~lR~~avd~I~eVg~~LkLPq~TlaTAivyFhRFysrkSi~~~d~qLVAAACLFLAcKvEEt-prkLrDII~Va~~~ 114 (730)
....+|..+++||.+++..|++++.|+++|++|||||+...++.+.++++||+||||||||+||. ++.+++++.++..
T Consensus 52 i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~- 130 (271)
T 2w96_A 52 VLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDN- 130 (271)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTT-
T ss_pred CCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcC-
Confidence 34579999999999999999999999999999999999999999999999999999999999998 8899998765422
Q ss_pred hccCCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHhcCCHHH----HHHHHHHHHcccccccc
Q psy11273 115 LFKNQPPLDPRSEAYQEQAQEIVVNENVLLQTLGFDVGIEHPHTYVVKCCHLVRASKDL----AQTSYFMASNSLHLTTM 190 (730)
Q Consensus 115 l~r~~~~lD~~se~y~~~reeIL~mEr~ILqaL~FDL~V~~P~~FL~rflk~L~~skeL----~qlA~~ILnDSL~lT~L 190 (730)
.+.+++|++||+.||++|+|++.+++|+.||.+|++.++...+. .+.|+++++.++ .+..
T Consensus 131 ---------------~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~-~d~~ 194 (271)
T 2w96_A 131 ---------------SIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCA-TDVK 194 (271)
T ss_dssp ---------------SSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-TSTH
T ss_pred ---------------CCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHH-hhhh
Confidence 13578999999999999999999999999999999998876543 467899987664 4667
Q ss_pred ccCCcHHHHHHHHHHHHHHHcCCCCCCCCCCCcccc----cc--cCCCCHHHHHHHHHHHHHHHhcCC
Q psy11273 191 CLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFW----YI--DKEVTQEQLEQLTEEFLAIFDKCP 252 (730)
Q Consensus 191 cL~y~PS~IAAAAIyLAakllgi~iP~~~eg~~Ww~----~f--d~~VT~EqLeeIi~EIL~LYe~~p 252 (730)
|++|+|+.||+||||+|+..+|...+. ...|+. .+ ..+++.++|++|+++|.++|+...
T Consensus 195 ~~~~~PS~iAaAai~lA~~~l~~~~~~---~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~~l~~~~~ 259 (271)
T 2w96_A 195 FISNPPSMVAAGSVVAAVQGLNLRSPN---NFLSYYRLTRFLSRVIKCDPDCLRACQEQIEALLESSL 259 (271)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHSTT---SCGGGTTHHHHHHHHHTSCHHHHHHHHHHHHHHHTTTT
T ss_pred hhccCHHHHHHHHHHHHHHHhCcCCCC---CCCcHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999988753221 223542 22 368999999999999999998543
No 13
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.96 E-value=1.6e-29 Score=257.14 Aligned_cols=196 Identities=10% Similarity=0.144 Sum_probs=165.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccchhhHHHHHHHHHHhhhcC-CCCCHHHHHHHH
Q psy11273 33 DAEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKVEE-QPRKLEHVIRVA 111 (730)
Q Consensus 33 s~e~El~lR~~avd~I~eVg~~LkLPq~TlaTAivyFhRFysrkSi~~~d~qLVAAACLFLAcKvEE-tprkLrDII~Va 111 (730)
..+....+|..+++||.+++..|+|+.+|+++|++|||||+..+.+.+.+++++|+||||||||+|| .+..++|++.++
T Consensus 44 q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~ 123 (254)
T 2f2c_A 44 QTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLS 123 (254)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC
T ss_pred CccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHh
Confidence 3344567999999999999999999999999999999999999999999999999999999999999 478899886543
Q ss_pred HHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHhcCCHH----HHHHHHHHHHccccc
Q psy11273 112 QLCLFKNQPPLDPRSEAYQEQAQEIVVNENVLLQTLGFDVGIEHPHTYVVKCCHLVRASKD----LAQTSYFMASNSLHL 187 (730)
Q Consensus 112 ~~~l~r~~~~lD~~se~y~~~reeIL~mEr~ILqaL~FDL~V~~P~~FL~rflk~L~~ske----L~qlA~~ILnDSL~l 187 (730)
.. .+.+++|++||+.||++|+|++.+++|+.||.+|++.++.+.+ +.+.|+++++.++ .
T Consensus 124 ~~----------------~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l-~ 186 (254)
T 2f2c_A 124 CD----------------CFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLYEAASTTICKAL-I 186 (254)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHT-T
T ss_pred CC----------------CCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHH-c
Confidence 22 2357899999999999999999999999999999999877543 4568999987766 5
Q ss_pred cccccCCcHHHHHHHHHHHHHHHcCCCCCCCCCCCc-ccc----c--ccCCCCHHHHHHHHHHHHHHHhcCCh
Q psy11273 188 TTMCLQYRSTVVACFCIHLACKWANWEIPQSNEGRK-WFW----Y--IDKEVTQEQLEQLTEEFLAIFDKCPS 253 (730)
Q Consensus 188 T~LcL~y~PS~IAAAAIyLAakllgi~iP~~~eg~~-Ww~----~--fd~~VT~EqLeeIi~EIL~LYe~~ps 253 (730)
+..|++|+|+.||+|||++|....+ +.. ||. . ...+++.++|.+|++.|.+++.....
T Consensus 187 d~~~~~~~PS~iAaAai~la~~~~~--------~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~~~~~~~ 251 (254)
T 2f2c_A 187 QPNIALLSPGLICAGGLLTTIETDN--------TNCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEAFSLYDL 251 (254)
T ss_dssp SGGGTTSCHHHHHHHHHHHHHHTTC--------CSSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTCCG
T ss_pred CcchhccCHHHHHHHHHHHHHHhcC--------CCCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCc
Confidence 7778999999999999999998742 222 331 1 14579999999999999999986654
No 14
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.94 E-value=1.7e-26 Score=226.04 Aligned_cols=184 Identities=13% Similarity=0.123 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccchhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHhhccCCC
Q psy11273 41 RQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQLCLFKNQP 120 (730)
Q Consensus 41 R~~avd~I~eVg~~LkLPq~TlaTAivyFhRFysrkSi~~~d~qLVAAACLFLAcKvEEtprkLrDII~Va~~~l~r~~~ 120 (730)
.+.++++|.++|..|+|++.+.++|..||+||+..+.+.+++.+.+++||||+|||.|+.++.++||+.+++.
T Consensus 9 l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~v------- 81 (200)
T 1ais_B 9 LAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARV------- 81 (200)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTS-------
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCC-------
Confidence 3489999999999999999999999999999999999999999999999999999999999999999987542
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHcCCcccc--CChHHHHHHHHHHhcCCHHHHHHHHHHHHccccccccccCCcHHH
Q psy11273 121 PLDPRSEAYQEQAQEIVVNENVLLQTLGFDVGI--EHPHTYVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCLQYRSTV 198 (730)
Q Consensus 121 ~lD~~se~y~~~reeIL~mEr~ILqaL~FDL~V--~~P~~FL~rflk~L~~skeL~qlA~~ILnDSL~lT~LcL~y~PS~ 198 (730)
...+|..+|+.|++.|||++.+ .+|+.||.+|+..|+.+.++.+.||++++++. .++++.+++|+.
T Consensus 82 -----------~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~-~~~~~~gr~P~~ 149 (200)
T 1ais_B 82 -----------DKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAY-KRGLTSGKSPAG 149 (200)
T ss_dssp -----------CHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHH-HTTCCTTSCHHH
T ss_pred -----------CHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-HcCcccCCCHHH
Confidence 2457889999999999999999 99999999999999999999999999998865 688999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCcccccccCCCCHHHHHHHHHHHHHHHh
Q psy11273 199 VACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQLEQLTEEFLAIFD 249 (730)
Q Consensus 199 IAAAAIyLAakllgi~iP~~~eg~~Ww~~fd~~VT~EqLeeIi~EIL~LYe 249 (730)
||+||||+|++++|...+. .++.. ..++++.+|.++..+|.+.++
T Consensus 150 iAaAaly~A~~~~~~~~t~----~ei~~--~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 150 LVAAALYIASLLEGEKRTQ----REVAE--VARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHHHHHHHHHHTTCCCCH----HHHHH--HHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCH----HHHHH--HhCCCHHHHHHHHHHHHHHcC
Confidence 9999999999999865321 12322 345788888888888877765
No 15
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.94 E-value=2.3e-26 Score=238.30 Aligned_cols=183 Identities=13% Similarity=0.141 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc-CccccchhhHHHHHHHHHHhhhcCC-CCCHHHHHHHHHHh
Q psy11273 37 ELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVF-HSFTQFHRNSIATAALFLAAKVEEQ-PRKLEHVIRVAQLC 114 (730)
Q Consensus 37 El~lR~~avd~I~eVg~~LkLPq~TlaTAivyFhRFysr-kSi~~~d~qLVAAACLFLAcKvEEt-prkLrDII~Va~~~ 114 (730)
...+|..+++||.+++..++|..+|+++|++|||||+.. ..+.+.+++++|+||||||||+||. ++.++|++.++..
T Consensus 46 ~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~- 124 (283)
T 1w98_B 46 QPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDG- 124 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTT-
T ss_pred CHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcC-
Confidence 347999999999999999999999999999999999998 6899999999999999999999997 7889998764321
Q ss_pred hccCCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHhcCCH-----------HHHHHHHHHHHc
Q psy11273 115 LFKNQPPLDPRSEAYQEQAQEIVVNENVLLQTLGFDVGIEHPHTYVVKCCHLVRASK-----------DLAQTSYFMASN 183 (730)
Q Consensus 115 l~r~~~~lD~~se~y~~~reeIL~mEr~ILqaL~FDL~V~~P~~FL~rflk~L~~sk-----------eL~qlA~~ILnD 183 (730)
.+.+++|++||+.||++|+|++.+++|+.||.+|++.++.+. .....+.++++.
T Consensus 125 ---------------~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llel 189 (283)
T 1w98_B 125 ---------------ACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDL 189 (283)
T ss_dssp ---------------SSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHH
Confidence 135789999999999999999999999999999998875421 222345566666
Q ss_pred cccccccccCCcHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccccCCCCHHHHHHHHHHHHHHHh
Q psy11273 184 SLHLTTMCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQLEQLTEEFLAIFD 249 (730)
Q Consensus 184 SL~lT~LcL~y~PS~IAAAAIyLAakllgi~iP~~~eg~~Ww~~fd~~VT~EqLeeIi~EIL~LYe 249 (730)
++ .+..|++|+|+.||+||||+|+. ...|. ...+++.++|.+|+..|+.++.
T Consensus 190 sl-~d~~~l~~~PS~iAaAai~la~~-----------~~~l~--~~tg~~~~~i~~c~~~l~~~~~ 241 (283)
T 1w98_B 190 CV-LDVDCLEFPYGILAASALYHFSS-----------SELMQ--KVSGYQWCDIENCVKWMVPFAM 241 (283)
T ss_dssp HH-HSGGGGGSCHHHHHHHHHHHTSC-----------HHHHH--HHSCCCHHHHHHHHHHHHHHHH
T ss_pred HH-hhhhhhcCCHHHHHHHHHHHHHC-----------hHHHH--HHhCCCHHHHHHHHHHHHHHHH
Confidence 65 46668999999999999999862 12233 3467999999999999999986
No 16
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.94 E-value=8.3e-26 Score=231.60 Aligned_cols=191 Identities=15% Similarity=0.143 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccchhhHHHHHHHHHHhhhcCC-CCCHHHHHHHHH
Q psy11273 34 AEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKVEEQ-PRKLEHVIRVAQ 112 (730)
Q Consensus 34 ~e~El~lR~~avd~I~eVg~~LkLPq~TlaTAivyFhRFysrkSi~~~d~qLVAAACLFLAcKvEEt-prkLrDII~Va~ 112 (730)
.+....+|..+++||.+++..++|..+|+++|++|||||++...+...++|+||+||||||||+||. +..+.+++.++.
T Consensus 42 ~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~ 121 (252)
T 1f5q_B 42 QHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCG 121 (252)
T ss_dssp HHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhC
Confidence 3444579999999999999999999999999999999999999999999999999999999999995 668888876543
Q ss_pred HhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHhcCCH----HHHHHHHHHHHcccccc
Q psy11273 113 LCLFKNQPPLDPRSEAYQEQAQEIVVNENVLLQTLGFDVGIEHPHTYVVKCCHLVRASK----DLAQTSYFMASNSLHLT 188 (730)
Q Consensus 113 ~~l~r~~~~lD~~se~y~~~reeIL~mEr~ILqaL~FDL~V~~P~~FL~rflk~L~~sk----eL~qlA~~ILnDSL~lT 188 (730)
. .+.+++|++||+.||++|+|++.+++|+.||.+|++.++.+. .+...|++++..++ .+
T Consensus 122 ~----------------~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l-~d 184 (252)
T 1f5q_B 122 G----------------ATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYLNIYNLCRPKIFCAL-CD 184 (252)
T ss_dssp T----------------TCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH-HC
T ss_pred C----------------CCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHH-hc
Confidence 2 235789999999999999999999999999999999987654 35567888876665 46
Q ss_pred ccccCCcHHHHHHHHHHHHHHHcCCCCCCCCCCCccc----cc--ccCCCCHHHHHHHHHHHHHHHhcC
Q psy11273 189 TMCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWF----WY--IDKEVTQEQLEQLTEEFLAIFDKC 251 (730)
Q Consensus 189 ~LcL~y~PS~IAAAAIyLAakllgi~iP~~~eg~~Ww----~~--fd~~VT~EqLeeIi~EIL~LYe~~ 251 (730)
.-++.|.||.||+||+.++. +.. ..|+ .. -..+++.++|.+|++.|.+++...
T Consensus 185 ~~~l~~~PS~iAaaa~~~~l---~~~-------~~~~~~~~~~L~~~t~~~~~~l~~C~~~i~~~l~~~ 243 (252)
T 1f5q_B 185 GRSAMKRPVLITLACMHLTM---NQK-------YDYYENRIDGVCKSLYITKEELHQCCDLVDIAIVSF 243 (252)
T ss_dssp HHHHTSCHHHHHHHHHHHHH---TTT-------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred hhhhccCHHHHHHHHHHHHh---ccC-------CCchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 66899999999999965443 211 1221 11 246899999999999999988653
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5.6e-25 Score=234.14 Aligned_cols=183 Identities=13% Similarity=0.099 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccchhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHhhccCCCC
Q psy11273 42 QQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQLCLFKNQPP 121 (730)
Q Consensus 42 ~~avd~I~eVg~~LkLPq~TlaTAivyFhRFysrkSi~~~d~qLVAAACLFLAcKvEEtprkLrDII~Va~~~l~r~~~~ 121 (730)
..++.+|.++|..|+||+.++.+|..||+||+..+.++++..+.|++||||+|||.|+.|+.++||+.+++.
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~v-------- 198 (345)
T 3k7a_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHV-------- 198 (345)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSSC--------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHCC--------
Confidence 478899999999999999999999999999999999999999999999999999999999999999886542
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHcC------------CccccCChHHHHHHHHHHhcCCHHHHHHHHHHHHccccccc
Q psy11273 122 LDPRSEAYQEQAQEIVVNENVLLQTLG------------FDVGIEHPHTYVVKCCHLVRASKDLAQTSYFMASNSLHLTT 189 (730)
Q Consensus 122 lD~~se~y~~~reeIL~mEr~ILqaL~------------FDL~V~~P~~FL~rflk~L~~skeL~qlA~~ILnDSL~lT~ 189 (730)
.+.+|..+++.|++.|+ |++.+.+|+.||.+|+..|+++.++.+.||++++++. .++
T Consensus 199 ----------~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~-~~~ 267 (345)
T 3k7a_M 199 ----------KTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCK-EIK 267 (345)
T ss_dssp ----------CSHHHHHHHHHHHHHHTCC---------------------------------------------------
T ss_pred ----------CHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-Hhc
Confidence 13578888999999998 9999999999999999999999999999999998865 688
Q ss_pred cccCCcHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccccCCCCHHHHHHHHHHHHHHHh
Q psy11273 190 MCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQLEQLTEEFLAIFD 249 (730)
Q Consensus 190 LcL~y~PS~IAAAAIyLAakllgi~iP~~~eg~~Ww~~fd~~VT~EqLeeIi~EIL~LYe 249 (730)
+++++.|..||+||||+|++++|...++ ..|... .+|++..|+++..+|+..+.
T Consensus 268 l~~Gr~P~~IAaAaIylAa~~~~~~~t~----~eIa~~--~~Vse~TIr~~ykel~~~~~ 321 (345)
T 3k7a_M 268 EIAGKSPITIAVVSIYLNILLFQIPITA----AKVGQT--LQVTEGTIKSGYKILYEHRD 321 (345)
T ss_dssp ------------------------------------------------------------
T ss_pred hhcCCCHHHHHHHHHHHHHHHHCCCCCH----HHHHHH--HCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876543 335443 35677777777777766553
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.82 E-value=9.6e-21 Score=202.19 Aligned_cols=181 Identities=12% Similarity=0.096 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccchhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHhhccCCCC
Q psy11273 42 QQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQLCLFKNQPP 121 (730)
Q Consensus 42 ~~avd~I~eVg~~LkLPq~TlaTAivyFhRFysrkSi~~~d~qLVAAACLFLAcKvEEtprkLrDII~Va~~~l~r~~~~ 121 (730)
..+...|.++|..|+||..+..+|..||++++..+.+++.....|++||||+|||.++.++.++||..+++.-
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~v~------- 199 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVK------- 199 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHTCC-------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCC-------
Confidence 4788999999999999999999999999999999999999999999999999999999999999999876531
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHcCCc------------cccCChHHHHHHHHHHhcCCHHHHHHHHHHHHccccccc
Q psy11273 122 LDPRSEAYQEQAQEIVVNENVLLQTLGFD------------VGIEHPHTYVVKCCHLVRASKDLAQTSYFMASNSLHLTT 189 (730)
Q Consensus 122 lD~~se~y~~~reeIL~mEr~ILqaL~FD------------L~V~~P~~FL~rflk~L~~skeL~qlA~~ILnDSL~lT~ 189 (730)
+.+|....+.|++.|++. +...+|..||.+|+..|+++.++.+.|+.++..+. ..+
T Consensus 200 -----------~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~-~~~ 267 (345)
T 4bbr_M 200 -----------TKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCK-EIK 267 (345)
T ss_dssp -----------TTHHHHHHHHHHHCC------------------------------------------------------
T ss_pred -----------HHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-hcc
Confidence 235777778888888863 67789999999999999999999999999997654 677
Q ss_pred cccCCcHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccccCCCCHHHHHHHHHHHHHHHhcCChhHHHHhhcccCC
Q psy11273 190 MCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQLEQLTEEFLAIFDKCPSKLKKRICSISSN 265 (730)
Q Consensus 190 LcL~y~PS~IAAAAIyLAakllgi~iP~~~eg~~Ww~~fd~~VT~EqLeeIi~EIL~LYe~~ps~Lrkrl~e~s~t 265 (730)
++.+..|..||+||||+|+.++|..+++ .+|-++...++.++|+||.++...
T Consensus 268 i~~GR~P~~IAAAaIylAa~l~g~~~t~------------------------~eIa~v~~Vse~TIr~rykel~~~ 319 (345)
T 4bbr_M 268 EIAGKSPITIAVVSIYLNILLFQIPITA------------------------AKVGQTLQVTEGTIKSGYKILYEH 319 (345)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCChHHHHHHHHHHHHHHhCCCCCH------------------------HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8899999999999999999998854332 233344555666666666666554
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=98.06 E-value=1.3e-05 Score=78.06 Aligned_cols=91 Identities=18% Similarity=0.234 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccchhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHhhccCCCCCC
Q psy11273 44 AANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQLCLFKNQPPLD 123 (730)
Q Consensus 44 avd~I~eVg~~LkLPq~TlaTAivyFhRFysrkSi~~~d~qLVAAACLFLAcKvEEtprkLrDII~Va~~~l~r~~~~lD 123 (730)
..+||.++|..|+|+..+..+|..+++++.....+.++.+..||+||||+||+..+.++..++|..++.+.
T Consensus 108 p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~vs--------- 178 (200)
T 1ais_B 108 PTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVT--------- 178 (200)
T ss_dssp GGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCC---------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCC---------
Confidence 35889999999999999999999999999998888999999999999999999999999999998876542
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHcCCccc
Q psy11273 124 PRSEAYQEQAQEIVVNENVLLQTLGFDVG 152 (730)
Q Consensus 124 ~~se~y~~~reeIL~mEr~ILqaL~FDL~ 152 (730)
..+|...-..|.+.||+++.
T Consensus 179 ---------~~ti~~~~~~l~~~l~~~~~ 198 (200)
T 1ais_B 179 ---------EVTVRNRYKELVEKLKIKVP 198 (200)
T ss_dssp ---------HHHHHHHHHHHHHHHTCCCC
T ss_pred ---------HHHHHHHHHHHHHHcCCCCC
Confidence 23566666677888887653
No 20
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=97.49 E-value=0.00027 Score=69.27 Aligned_cols=70 Identities=13% Similarity=0.174 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccchhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Q psy11273 44 AANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQL 113 (730)
Q Consensus 44 avd~I~eVg~~LkLPq~TlaTAivyFhRFysrkSi~~~d~qLVAAACLFLAcKvEEtprkLrDII~Va~~ 113 (730)
...+|.+++..|+++..+..+|..++...+....+.++.+..||+||||+||+..+.++..++|..++.+
T Consensus 102 p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~~v 171 (207)
T 1c9b_A 102 TGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 171 (207)
T ss_dssp THHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHhCC
Confidence 3688999999999999999999999999998888889999999999999999999988999998776643
No 21
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=97.33 E-value=0.00088 Score=70.55 Aligned_cols=93 Identities=13% Similarity=0.156 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcC---ccccchhhHHHHHHHHHHhhhcCC-CCCHHHHHHHHHHhhccCC
Q psy11273 44 AANLIQDMGQRLQVTQLCINTAIVYMHRFYVFH---SFTQFHRNSIATAALFLAAKVEEQ-PRKLEHVIRVAQLCLFKNQ 119 (730)
Q Consensus 44 avd~I~eVg~~LkLPq~TlaTAivyFhRFysrk---Si~~~d~qLVAAACLFLAcKvEEt-prkLrDII~Va~~~l~r~~ 119 (730)
..+||.++...-++...|+-.|++|++|+..+. .+.....+-+.+|||.||+|+-+. ...-.....+...
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGi------ 150 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGV------ 150 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTS------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCc------
Confidence 457889999999999999999999999998753 344667889999999999997763 3333333333211
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHcCCccccC
Q psy11273 120 PPLDPRSEAYQEQAQEIVVNENVLLQTLGFDVGIE 154 (730)
Q Consensus 120 ~~lD~~se~y~~~reeIL~mEr~ILqaL~FDL~V~ 154 (730)
..+++-.||+.+|..|+|+|.+.
T Consensus 151 ------------sl~ELN~LE~eFL~lLdf~L~V~ 173 (293)
T 2pmi_B 151 ------------RCHELNILENDFLKRVNYRIIPR 173 (293)
T ss_dssp ------------CHHHHHHHHHHHHHTTTTCCSCC
T ss_pred ------------CHHHHHHHHHHHHHHcCCceeeC
Confidence 25689999999999999999876
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=95.72 E-value=0.0017 Score=69.42 Aligned_cols=72 Identities=14% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccchhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHh
Q psy11273 43 QAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQLC 114 (730)
Q Consensus 43 ~avd~I~eVg~~LkLPq~TlaTAivyFhRFysrkSi~~~d~qLVAAACLFLAcKvEEtprkLrDII~Va~~~ 114 (730)
...+||.++|..|+|+..+..+|..++++........++.+.-||+||||+||.+.+..+..++|..++.+.
T Consensus 234 ~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vs 305 (345)
T 4bbr_M 234 QNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVT 305 (345)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCC
Confidence 355799999999999999999999999999987777899999999999999999998888888888877653
No 23
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.0018 Score=68.95 Aligned_cols=70 Identities=13% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccchhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Q psy11273 44 AANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQL 113 (730)
Q Consensus 44 avd~I~eVg~~LkLPq~TlaTAivyFhRFysrkSi~~~d~qLVAAACLFLAcKvEEtprkLrDII~Va~~ 113 (730)
..+||.++|..|+|+..+..+|..|+++......+.++.+..||+|||||||.+.+..+..++|..++.+
T Consensus 235 p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~V 304 (345)
T 3k7a_M 235 NLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQV 304 (345)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
Confidence 3578899999999999999999999999988777889999999999999999998877777888776654
No 24
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=93.11 E-value=0.14 Score=51.02 Aligned_cols=55 Identities=16% Similarity=0.099 Sum_probs=50.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccchhhHHHHHHHHHHhhhcC
Q psy11273 45 ANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKVEE 99 (730)
Q Consensus 45 vd~I~eVg~~LkLPq~TlaTAivyFhRFysrkSi~~~d~qLVAAACLFLAcKvEE 99 (730)
.+||..++..+++...+..+|..++...+....+-++.+..||+||||+|++..+
T Consensus 135 ~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~ 189 (235)
T 1zp2_A 135 YTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDE 189 (235)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcC
Confidence 5788888999999999999999999999888888899999999999999999865
No 25
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=92.71 E-value=0.25 Score=50.48 Aligned_cols=88 Identities=13% Similarity=0.194 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccccccccccCCcHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccccCCCCHHHH
Q psy11273 158 TYVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQL 237 (730)
Q Consensus 158 ~FL~rflk~L~~skeL~qlA~~ILnDSL~lT~LcL~y~PS~IAAAAIyLAakllgi~iP~~~eg~~Ww~~fd~~VT~EqL 237 (730)
++|...+..++...+...+|..++.. ++...-.-......||+||+++|+++.+...|... +.....+..++.++|
T Consensus 43 ~wl~~v~~~~~l~~~tl~lAv~~lDR-fl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~---d~~~~~~~~~~~~eI 118 (269)
T 2b9r_A 43 DWLVQVQMKFRLLQETMYMTVSIIDR-FMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIG---DFAFVTDNTYTKHQI 118 (269)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH-HHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHH---HHHHHTCSSSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH-HhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHH---HHHHHhcCCCCHHHH
Confidence 46777777788888888888888743 33333345678999999999999999876544321 222223345788888
Q ss_pred HHHHHHHHHHHh
Q psy11273 238 EQLTEEFLAIFD 249 (730)
Q Consensus 238 eeIi~EIL~LYe 249 (730)
.++-..|++.++
T Consensus 119 ~~mE~~IL~~L~ 130 (269)
T 2b9r_A 119 RQMEMKILRALN 130 (269)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 888888887665
No 26
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=91.86 E-value=0.35 Score=48.78 Aligned_cols=88 Identities=11% Similarity=0.101 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccccccccccCCcHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccccCCCCHHHH
Q psy11273 158 TYVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQL 237 (730)
Q Consensus 158 ~FL~rflk~L~~skeL~qlA~~ILnDSL~lT~LcL~y~PS~IAAAAIyLAakllgi~iP~~~eg~~Ww~~fd~~VT~EqL 237 (730)
++|...+..++...+...+|..++ |.++.....-......||+||+++|+++.....|... +.....+..++.++|
T Consensus 57 dwl~~v~~~~~l~~etl~lAv~~~-DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~---d~~~~~~~~~~~~~i 132 (254)
T 2f2c_A 57 TWMHLLCESFELDKSVFPLSVSIL-DRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVS---KLTYLSCDCFTNLEL 132 (254)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHH-HHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHH---HHSTTC---CCHHHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHH-HHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHH---HHHHHhCCCCCHHHH
Confidence 556667777788888888898887 4443334456788999999999999999775444321 122222344788899
Q ss_pred HHHHHHHHHHHh
Q psy11273 238 EQLTEEFLAIFD 249 (730)
Q Consensus 238 eeIi~EIL~LYe 249 (730)
.++-..|++.++
T Consensus 133 ~~mE~~IL~~L~ 144 (254)
T 2f2c_A 133 INQEKDILEALK 144 (254)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC
Confidence 888888888765
No 27
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=91.75 E-value=0.29 Score=49.53 Aligned_cols=88 Identities=11% Similarity=0.189 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccccccccccCCcHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccccCCCCHHHH
Q psy11273 158 TYVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQL 237 (730)
Q Consensus 158 ~FL~rflk~L~~skeL~qlA~~ILnDSL~lT~LcL~y~PS~IAAAAIyLAakllgi~iP~~~eg~~Ww~~fd~~VT~EqL 237 (730)
++|...+..++...+...+|..++ |.++.....-......||+||+++|+++.....|... +.....+..++.++|
T Consensus 56 dwl~ev~~~~~l~~etl~lAv~~~-DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~---d~~~~~~~~~~~~~i 131 (257)
T 1g3n_C 56 TWMFSVCQEYNLEPNVVALALNLL-DRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTS---SLCYAAADSFSRQEL 131 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH-HHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHH---HHHHHTTTCSCHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHH-HHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHH---HHHHHHCCCCCHHHH
Confidence 566777777888888889998887 4343333445677889999999999999876544321 122222345788888
Q ss_pred HHHHHHHHHHHh
Q psy11273 238 EQLTEEFLAIFD 249 (730)
Q Consensus 238 eeIi~EIL~LYe 249 (730)
.++-..|++.++
T Consensus 132 ~~mE~~iL~~L~ 143 (257)
T 1g3n_C 132 IDQEKELLEKLA 143 (257)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC
Confidence 888888877665
No 28
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=91.64 E-value=0.23 Score=50.30 Aligned_cols=88 Identities=13% Similarity=0.200 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccccccccccCCcHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccccCCCCHHHH
Q psy11273 158 TYVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQL 237 (730)
Q Consensus 158 ~FL~rflk~L~~skeL~qlA~~ILnDSL~lT~LcL~y~PS~IAAAAIyLAakllgi~iP~~~eg~~Ww~~fd~~VT~EqL 237 (730)
++|...+..++...+...+|..++.. ++...-+-......||+||+++|+++.+...|... +.....+..++.++|
T Consensus 44 dwl~~v~~~~~l~~~tl~lAv~~lDR-fls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~---d~~~i~~~~~~~~~i 119 (260)
T 2cch_B 44 DWLVEVGEEYKLQNETLHLAVNYIDR-FLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA---EFVYITDDTYTKKQV 119 (260)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHH---HHHHHTTSSSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH-HhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHH---HHHHHHcCCcCHHHH
Confidence 46666677777788888888877633 32222234566889999999999999876544321 222222334778888
Q ss_pred HHHHHHHHHHHh
Q psy11273 238 EQLTEEFLAIFD 249 (730)
Q Consensus 238 eeIi~EIL~LYe 249 (730)
.++-..|++.++
T Consensus 120 ~~mE~~iL~~L~ 131 (260)
T 2cch_B 120 LRMEHLVLKVLT 131 (260)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 888888877665
No 29
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=91.58 E-value=0.36 Score=50.47 Aligned_cols=88 Identities=15% Similarity=0.188 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccccccccccCCcHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccccCCCCHHHH
Q psy11273 158 TYVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQL 237 (730)
Q Consensus 158 ~FL~rflk~L~~skeL~qlA~~ILnDSL~lT~LcL~y~PS~IAAAAIyLAakllgi~iP~~~eg~~Ww~~fd~~VT~EqL 237 (730)
+||...+..++...+...+|..++.. ++....+-.+....||+||+++|+++.....|.. +......+..++.++|
T Consensus 76 dwl~ev~~~~~l~~~t~~lAv~~lDR-fls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~---~~l~~~~~~~~~~~~i 151 (306)
T 3g33_B 76 YWMLEVCEEQRCEEEVFPLAMNYLDR-YLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTI---EKLCIYTDHAVSPRQL 151 (306)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHH-HHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCT---THHHHHTTTSSCHHHH
T ss_pred HHHHHHHHHhCCcHhHHHHHHHHHHH-HHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCH---HHHHHHhccCccHHHH
Confidence 45666667777888888888888743 3333445678899999999999999976554432 2232223445788999
Q ss_pred HHHHHHHHHHHh
Q psy11273 238 EQLTEEFLAIFD 249 (730)
Q Consensus 238 eeIi~EIL~LYe 249 (730)
.++-..||+.++
T Consensus 152 ~~mE~~IL~~L~ 163 (306)
T 3g33_B 152 RDWEVLVLGKLK 163 (306)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 888888888665
No 30
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=91.20 E-value=0.31 Score=50.29 Aligned_cols=59 Identities=10% Similarity=0.112 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccccccccccCCcHHHHHHHHHHHHHHHcCCCCC
Q psy11273 157 HTYVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANWEIP 216 (730)
Q Consensus 157 ~~FL~rflk~L~~skeL~qlA~~ILnDSL~lT~LcL~y~PS~IAAAAIyLAakllgi~iP 216 (730)
.++|.+.+..|++..++..+|..++.. ++....+-.+.+..||+||||+||++.+...+
T Consensus 47 ~~~I~~v~~~l~L~~~t~~tA~~~~~R-F~~~~s~~~~~~~lva~acLfLA~K~EE~~~~ 105 (285)
T 3rgf_B 47 TNVIQALGEHLKLRQQVIATATVYFKR-FYARYSLKSIDPVLMAPTCVFLASKVEEFGVV 105 (285)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH-HHHhCCchhcCHHHHHHHHHHHHHhhhccccc
Confidence 456777788889999999999888744 33445567899999999999999999776543
No 31
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=90.90 E-value=0.37 Score=48.36 Aligned_cols=57 Identities=14% Similarity=0.204 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHcCCCH----HHHHHHHHHHHHHhhcCccccchhhHHHHHHHHHHhhhcCC
Q psy11273 44 AANLIQDMGQRLQVTQ----LCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKVEEQ 100 (730)
Q Consensus 44 avd~I~eVg~~LkLPq----~TlaTAivyFhRFysrkSi~~~d~qLVAAACLFLAcKvEEt 100 (730)
..+||..++..|++.. .+...|..++...+....+-.+.+..||+||||+|++..+.
T Consensus 151 P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~ 211 (258)
T 2i53_A 151 PYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKF 211 (258)
T ss_dssp HHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCC
Confidence 3678899999999987 57888989999888877888999999999999999998653
No 32
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=90.85 E-value=0.41 Score=50.42 Aligned_cols=56 Identities=16% Similarity=0.460 Sum_probs=45.8
Q ss_pred HHHHHHHHHhc--CCHHHHHHHHHHHHccccccccccCCcHHHHHHHHHHHHHHHcCCC
Q psy11273 158 TYVVKCCHLVR--ASKDLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANWE 214 (730)
Q Consensus 158 ~FL~rflk~L~--~skeL~qlA~~ILnDSL~lT~LcL~y~PS~IAAAAIyLAakllgi~ 214 (730)
.+|..++..++ ..+.+..+|..++.. ++....+..+.+..||+||||+||++-+..
T Consensus 62 ~~I~ev~~~l~~~Lp~~t~~tA~~~~~R-F~~~~s~~~~~~~lva~acLfLA~K~EE~~ 119 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPRSVVGTACMYFKR-FYLNNSVMEYHPRIIMLTCAFLACKVDEFN 119 (323)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHHHHHH-HGGGSCTTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH-HhhhCChhhcCHHHHHHHHHHHHHhhhcCC
Confidence 46777888888 889999999988744 445556678999999999999999998753
No 33
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=90.84 E-value=0.41 Score=48.17 Aligned_cols=57 Identities=9% Similarity=0.129 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHccccccccccCCcHHHHHHHHHHHHHHHcCC
Q psy11273 156 PHTYVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANW 213 (730)
Q Consensus 156 P~~FL~rflk~L~~skeL~qlA~~ILnDSL~lT~LcL~y~PS~IAAAAIyLAakllgi 213 (730)
-.++|.+++..++...++..+|..++.. ++....+-.+.+..||+||||+||++.+.
T Consensus 34 ~~~~i~~v~~~l~l~~~t~~~A~~~~dR-f~~~~~~~~~~~qlv~~acL~lA~K~EE~ 90 (257)
T 2ivx_A 34 AANLIQEMGQRLNVSQLTINTAIVYMHR-FYMHHSFTKFNKNIISSTALFLAAKVEEQ 90 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH-HTTTSCTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH-HHhhCChhhhCHHHHHHHHHHHHhccccC
Confidence 3467888888899999999999988744 44445567899999999999999999775
No 34
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=90.61 E-value=0.52 Score=48.02 Aligned_cols=88 Identities=14% Similarity=0.212 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccccccccccCCcHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccccCCCCHHHH
Q psy11273 158 TYVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQL 237 (730)
Q Consensus 158 ~FL~rflk~L~~skeL~qlA~~ILnDSL~lT~LcL~y~PS~IAAAAIyLAakllgi~iP~~~eg~~Ww~~fd~~VT~EqL 237 (730)
++|......++...+...+|..++.. ++...-.-......||+||+|+|+++.+...+... ......+..++.++|
T Consensus 62 ~wl~~v~~~~~l~~~tl~lAv~~lDR-fls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~---~~~~~~~~~~~~~eI 137 (271)
T 2w96_A 62 TWMLEVCEEQKCEEEVFPLAMNYLDR-FLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAE---KLCIYTDNSIRPEEL 137 (271)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHH-HHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHH---HHHHHTTTSSCHHHH
T ss_pred HHHHHHHHHHCCchhHHHHHHHHHHH-hCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHH---HHHHHhcCCCCHHHH
Confidence 45556666677777788888888743 33333345788999999999999999876333221 111122334778888
Q ss_pred HHHHHHHHHHHh
Q psy11273 238 EQLTEEFLAIFD 249 (730)
Q Consensus 238 eeIi~EIL~LYe 249 (730)
.++-..|++.++
T Consensus 138 ~~mE~~IL~~L~ 149 (271)
T 2w96_A 138 LQMELLLVNKLK 149 (271)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC
Confidence 888877777655
No 35
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=90.06 E-value=0.61 Score=48.05 Aligned_cols=88 Identities=7% Similarity=0.160 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcccccc-ccccCCcHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccccCCCCHHH
Q psy11273 158 TYVVKCCHLVRASKDLAQTSYFMASNSLHLT-TMCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQ 236 (730)
Q Consensus 158 ~FL~rflk~L~~skeL~qlA~~ILnDSL~lT-~LcL~y~PS~IAAAAIyLAakllgi~iP~~~eg~~Ww~~fd~~VT~Eq 236 (730)
++|......++...+...+|..++.. ++.. ...-.+....||+||+++|+++.+...|.. ++.....+..++.++
T Consensus 55 ~wl~~v~~~~~l~~~tl~lAv~~lDR-fls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l---~~~~~i~~~~~~~~e 130 (283)
T 1w98_B 55 DWLMEVCEVYKLHRETFYLAQDFFDR-YMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKL---HQFAYVTDGACSGDE 130 (283)
T ss_dssp HHHHHHHHHTTCBHHHHHHHHHHHHH-HHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCH---HHHHHTTTTSSCHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcH---HHHHHHHcCCCCHHH
Confidence 45666666777788888888888743 3222 234578899999999999999987654432 122222344578899
Q ss_pred HHHHHHHHHHHHh
Q psy11273 237 LEQLTEEFLAIFD 249 (730)
Q Consensus 237 LeeIi~EIL~LYe 249 (730)
|.++-..|++.++
T Consensus 131 i~~mE~~IL~~L~ 143 (283)
T 1w98_B 131 ILTMELMIMKALK 143 (283)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 9888888888766
No 36
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=89.01 E-value=0.59 Score=50.09 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHccccccccccCCcHHHHHHHHHHHHHHHcCC
Q psy11273 156 PHTYVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANW 213 (730)
Q Consensus 156 P~~FL~rflk~L~~skeL~qlA~~ILnDSL~lT~LcL~y~PS~IAAAAIyLAakllgi 213 (730)
-.++|.+++..|++..++..+|..++.. ++....+-.+.+..||+||||||+++...
T Consensus 41 ~v~wI~ev~~~l~L~~~t~~tAv~~~dR-Fl~~~sv~~~~~qlva~acLfLA~K~EE~ 97 (358)
T 2pk2_A 41 AANLLQDMGQRLNVSQLTINTAIVYMHR-FYMIQSFTRFPGNSVAPAALFLAAKVEEQ 97 (358)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHHHHHH-HTTTSCTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHhcCCcccccHHHHHHHHHHHHHhhccC
Confidence 4467788888888999999999988744 44445567899999999999999999765
No 37
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=87.19 E-value=15 Score=37.38 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcC---ccccchhhHHHHHHHHHHhhhcCCCCCHHHHH
Q psy11273 43 QAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFH---SFTQFHRNSIATAALFLAAKVEEQPRKLEHVI 108 (730)
Q Consensus 43 ~avd~I~eVg~~LkLPq~TlaTAivyFhRFysrk---Si~~~d~qLVAAACLFLAcKvEEtprkLrDII 108 (730)
.+.+-|+.+..+-+++..++..|+.+-+.|.-.. -.+-.+.+.|++|||.||+--...|..+.++.
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r 82 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVR 82 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHH
Confidence 3556678999999999999999999999998643 23335678999999999998888899988774
No 38
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=86.90 E-value=0.96 Score=46.16 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccccccccccCCcHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccccCCCCHHHH
Q psy11273 158 TYVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQL 237 (730)
Q Consensus 158 ~FL~rflk~L~~skeL~qlA~~ILnDSL~lT~LcL~y~PS~IAAAAIyLAakllgi~iP~~~eg~~Ww~~fd~~VT~EqL 237 (730)
++|...+..++...+...+|.+++ |.++...-.-......||++|+++|+++.....|.. +......+..++.++|
T Consensus 54 dWl~ev~~~~~l~~eT~~lAv~~l-DRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~---~~l~~~~~~~yt~~~i 129 (252)
T 1f5q_B 54 TWMFCVCKDLRQDNNVFPLAVALL-DELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKA---TQLAYLCGGATTADKL 129 (252)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHH-HHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCH---HHHHHHHCTTCCHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHH-HHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHhCCCCCHHHH
Confidence 456666677777788888888887 433322233456788999999999999987654432 1222223456788999
Q ss_pred HHHHHHHHHHHh
Q psy11273 238 EQLTEEFLAIFD 249 (730)
Q Consensus 238 eeIi~EIL~LYe 249 (730)
.++-..||+.++
T Consensus 130 ~~mE~~IL~~L~ 141 (252)
T 1f5q_B 130 LTLEVKSLDTLS 141 (252)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC
Confidence 888888888665
No 39
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=85.47 E-value=1.4 Score=39.38 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=44.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhhcCc-----cccchhhHHHHHHHHHHhhhcCCCCCHHHHHH
Q psy11273 48 IQDMGQRLQVTQLCINTAIVYMHRFYVFHS-----FTQFHRNSIATAALFLAAKVEEQPRKLEHVIR 109 (730)
Q Consensus 48 I~eVg~~LkLPq~TlaTAivyFhRFysrkS-----i~~~d~qLVAAACLFLAcKvEEtprkLrDII~ 109 (730)
|.++|..|++.+ +...|..++++|-..-. -.+...-.+++||+|.|||.......=..++.
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~ 71 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVA 71 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHHH
Confidence 679999999988 66788899999975421 12444567899999999999875544333443
No 40
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=75.68 E-value=8.6 Score=42.31 Aligned_cols=69 Identities=12% Similarity=0.125 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHhh--cCccccchhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q psy11273 43 QAANLIQDMGQRLQVTQ-LCINTAIVYMHRFYV--FHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVA 111 (730)
Q Consensus 43 ~avd~I~eVg~~LkLPq-~TlaTAivyFhRFys--rkSi~~~d~qLVAAACLFLAcKvEEtprkLrDII~Va 111 (730)
.+..-|.++|.+|++.. +........|+..+. ...+.++++.-+++.|+|.-||+.....++++|+..+
T Consensus 281 LAa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Y 352 (411)
T 4ell_A 281 LAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAY 352 (411)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence 35677889999998765 333333344444443 3567889999999999999999999889999999854
No 41
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=73.01 E-value=11 Score=40.74 Aligned_cols=68 Identities=12% Similarity=0.135 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHhh--cCccccchhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q psy11273 44 AANLIQDMGQRLQVTQ-LCINTAIVYMHRFYV--FHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVA 111 (730)
Q Consensus 44 avd~I~eVg~~LkLPq-~TlaTAivyFhRFys--rkSi~~~d~qLVAAACLFLAcKvEEtprkLrDII~Va 111 (730)
+..=|.++|..|++.. +........|...+. ...+.++++.-+.+.|+|.-||+.....++++|+..+
T Consensus 218 a~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~Y 288 (347)
T 2r7g_A 218 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAY 288 (347)
T ss_dssp HHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4566899999998765 444445555555554 3567889999999999999999999888999998864
No 42
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=70.25 E-value=11 Score=39.84 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=46.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhhcC---ccccchhhHHHHHHHHHHhhh-cCCCCCHHHHHHHH
Q psy11273 48 IQDMGQRLQVTQLCINTAIVYMHRFYVFH---SFTQFHRNSIATAALFLAAKV-EEQPRKLEHVIRVA 111 (730)
Q Consensus 48 I~eVg~~LkLPq~TlaTAivyFhRFysrk---Si~~~d~qLVAAACLFLAcKv-EEtprkLrDII~Va 111 (730)
..++|..|+|...|...|...|++..... +....+.+....||||+||.. ++....|-.++..+
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~ 73 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNI 73 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHc
Confidence 45789999999999999999999977641 122234555666779999974 44678888887765
No 43
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=64.46 E-value=23 Score=41.15 Aligned_cols=70 Identities=11% Similarity=0.092 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHhhc--CccccchhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q psy11273 43 QAANLIQDMGQRLQVTQ-LCINTAIVYMHRFYVF--HSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQ 112 (730)
Q Consensus 43 ~avd~I~eVg~~LkLPq-~TlaTAivyFhRFysr--kSi~~~d~qLVAAACLFLAcKvEEtprkLrDII~Va~ 112 (730)
.+..-|.++|.+|++.. ........+|+..+.. ..+.++++.-+++.|+|.-||+.....++++|+..+.
T Consensus 526 LAa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~Yr 598 (656)
T 4elj_A 526 LAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 598 (656)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 35677999999998774 4444555666666543 4677899999999999999999998899999998654
No 44
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=53.98 E-value=30 Score=40.30 Aligned_cols=64 Identities=8% Similarity=0.052 Sum_probs=47.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhhc-----CccccchhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q psy11273 48 IQDMGQRLQVTQLCINTAIVYMHRFYVF-----HSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQ 112 (730)
Q Consensus 48 I~eVg~~LkLPq~TlaTAivyFhRFysr-----kSi~~~d~qLVAAACLFLAcKvEEtprkLrDII~Va~ 112 (730)
..++|..|++...|...|...|...... .++.+...+.+|+ ++|.||.+|+....|-.++..+.
T Consensus 8 f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg~~~~W~aC-~ly~~~~~~gn~vsLt~lLr~~~ 76 (656)
T 4elj_A 8 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGIC-IFIAAVDLDEMSFTFTELQKNIE 76 (656)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----CCHHHHHHH-HHHHHHHTTCCCSCHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCcccchHHhhhh-hheeeeeccCCeeeHHHHHHHhc
Confidence 4588999999999999999999998853 3345555555555 47777778888899988887653
No 45
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=41.30 E-value=3.6e+02 Score=28.91 Aligned_cols=84 Identities=11% Similarity=0.166 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCC--------h--------HHH-----------HHHHHHHhcC-CHHHHHHHHHHHH
Q psy11273 131 EQAQEIVVNENVLLQTLGFDVGIEH--------P--------HTY-----------VVKCCHLVRA-SKDLAQTSYFMAS 182 (730)
Q Consensus 131 ~~reeIL~mEr~ILqaL~FDL~V~~--------P--------~~F-----------L~rflk~L~~-skeL~qlA~~ILn 182 (730)
...+.+-..|..||+.|-|.-.-.. + .-| |..+|..|+. ..++...+|.++.
T Consensus 166 elvkHL~~iEe~iLeslaW~~~S~L~~~l~~~~~~~g~~~sl~~f~rKvy~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe 245 (347)
T 2r7g_A 166 EMIKHLERCEHRIMESLAWLSDSPLFDLIKQSKDREGKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQ 245 (347)
T ss_dssp HHHHHHHHHHHHHHHTGGGSTTCTHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHhccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3456778899999999999754320 1 111 2233444443 3457777887766
Q ss_pred cccc-ccccccCCcHHHHHHHHHHHHHHHcCCC
Q psy11273 183 NSLH-LTTMCLQYRSTVVACFCIHLACKWANWE 214 (730)
Q Consensus 183 DSL~-lT~LcL~y~PS~IAAAAIyLAakllgi~ 214 (730)
.++. .+.++....-.+|-++|||..|+..+.+
T Consensus 246 ~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~ 278 (347)
T 2r7g_A 246 HTLQNEYELMRDRHLDQIMMCSMYGICKVKNID 278 (347)
T ss_dssp HHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCC
Confidence 5543 4778889999999999999999998743
No 46
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=33.34 E-value=1.1e+02 Score=32.39 Aligned_cols=89 Identities=13% Similarity=0.123 Sum_probs=59.8
Q ss_pred ChHHHHHHHHHHhcCCHHHHHHHHHHHHccccc--ccccc-CCcHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccccCC
Q psy11273 155 HPHTYVVKCCHLVRASKDLAQTSYFMASNSLHL--TTMCL-QYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKE 231 (730)
Q Consensus 155 ~P~~FL~rflk~L~~skeL~qlA~~ILnDSL~l--T~LcL-~y~PS~IAAAAIyLAakllgi~iP~~~eg~~Ww~~fd~~ 231 (730)
.-++||.++.+.......+.-.|..++. .+.. ..+.+ .+..+-+-++||.+|+++++-... ....|... .+
T Consensus 76 SI~~Yl~RI~k~t~ls~~~ll~ALvYLd-RL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~y---sN~~wAkV--gG 149 (293)
T 2pmi_B 76 SIFNYFIRLTKFSSLEHCVLMTSLYYID-LLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFS---TNAHYAKV--GG 149 (293)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHHHH-HHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCC---CHHHHHHH--HT
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHhhCCCCccCCchHHHHHHHHHHHHHHhcccccc---ChhHhhhc--cC
Confidence 4578888888776677776666655543 2321 12222 477899999999999999864311 11234333 57
Q ss_pred CCHHHHHHHHHHHHHHHh
Q psy11273 232 VTQEQLEQLTEEFLAIFD 249 (730)
Q Consensus 232 VT~EqLeeIi~EIL~LYe 249 (730)
++..+|..+-.++|.+.+
T Consensus 150 isl~ELN~LE~eFL~lLd 167 (293)
T 2pmi_B 150 VRCHELNILENDFLKRVN 167 (293)
T ss_dssp SCHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHHcC
Confidence 899999999999988776
No 47
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=30.73 E-value=1.1e+02 Score=27.35 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=37.1
Q ss_pred ccCCcHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccccCCCCHHHHHHHHHHHHHHHh
Q psy11273 191 CLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQLEQLTEEFLAIFD 249 (730)
Q Consensus 191 cL~y~PS~IAAAAIyLAakllgi~iP~~~eg~~Ww~~fd~~VT~EqLeeIi~EIL~LYe 249 (730)
.+.++--.-++||+|.||+.+.+.+.... .. --.++...+...++.++-.+..
T Consensus 40 ~~D~s~P~f~aaA~~~acr~~K~kVdK~K----L~--~~s~lk~~~f~~l~~~~e~~~~ 92 (95)
T 3m03_A 40 DLDLSRPLFTSAALLSACKILKLKVDKNK----MV--ATSGVKKAIFDRLCKQLEKIGQ 92 (95)
T ss_dssp HCCTTSHHHHHHHHHHHHHHTTCCCCHHH----HH--HTTCBCHHHHHHHHHHHHHHHT
T ss_pred cccccccHHHHHHHHHHHHHHccCCCHHH----HH--HHHCCCHHHHHHHHHHHHHHHH
Confidence 35677778899999999999987764321 11 1235777888888888776654
No 48
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=27.88 E-value=5.1e+02 Score=27.93 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=41.9
Q ss_pred CCcHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccccCCC--------------CHHHHHHHHHHHHHHHh
Q psy11273 193 QYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEV--------------TQEQLEQLTEEFLAIFD 249 (730)
Q Consensus 193 ~y~PS~IAAAAIyLAakllgi~iP~~~eg~~Ww~~fd~~V--------------T~EqLeeIi~EIL~LYe 249 (730)
+|....+|-+..+..+.++|.+++...-...|+..|..++ +.+-|+.+...+++-+.
T Consensus 297 GY~~~~var~w~~~~a~l~g~~~~~~~P~~~~~~~~~p~~~l~~~~~~~~~~~n~~~~l~~~~~~~~~~l~ 367 (376)
T 4a69_A 297 GYTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLK 367 (376)
T ss_dssp CCSHHHHHHHHHHHHHHHTTCCCCSBCCCCTTGGGGTTTCBSSCCCCCCSCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHhcCCCccCCCCCchHHHHhCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 7999999999999999999988775432336887764432 46777777777666554
Done!