RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11273
(730 letters)
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 143
Score = 161 bits (408), Expect = 5e-47
Identities = 95/143 (66%), Positives = 121/143 (84%)
Query: 11 SPDRWYFTKEQLENTPSRKCGYDAEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMH 70
+ RW+FT+EQLENTPSR+CG +A+KELSCRQQAANLIQ+MGQRL V+QL INTAIVYMH
Sbjct: 1 ASSRWFFTREQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMH 60
Query: 71 RFYVFHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQ 130
RFY+ HSFT+F++N I++ ALFLAAKVEEQ RKLEHVI+VA CL +P LD + +AY
Sbjct: 61 RFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTKCDAYL 120
Query: 131 EQAQEIVVNENVLLQTLGFDVGI 153
+Q +E+V+ E ++LQTLGF++ I
Sbjct: 121 QQTRELVILETIMLQTLGFEITI 143
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId:
9606]}
Length = 144
Score = 147 bits (373), Expect = 3e-42
Identities = 55/144 (38%), Positives = 81/144 (56%), Gaps = 5/144 (3%)
Query: 10 HSPDRWYFTKEQLENTPSRKCGYDAEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYM 69
H+ WY+ K+ L +TPS+ G D E R++ A I D+G RL + + T I+Y
Sbjct: 6 HTKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYF 65
Query: 70 HRFYVFHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQLCLFKNQPPLDPRSEAY 129
HRFY+FHSF QF R LFLA KVEE P+K + +I+ A+ L Q +
Sbjct: 66 HRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQF-----GQFG 120
Query: 130 QEQAQEIVVNENVLLQTLGFDVGI 153
+ +E++V E +LLQT+ FD+ +
Sbjct: 121 DDPKEEVMVLERILLQTIKFDLQV 144
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 136 bits (345), Expect = 1e-38
Identities = 76/113 (67%), Positives = 91/113 (80%), Gaps = 1/113 (0%)
Query: 154 EHPHTYVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANW 213
EHPHT VVKC LVRASKDLAQTSYFMA+NSLHLTT CLQY+ TV+AC CIHLACKW+NW
Sbjct: 1 EHPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNW 60
Query: 214 EIPQSNEGRKWFWYIDKEVTQEQLEQLTEEFLAIFDKCPSKLKKRICSISSNQ 266
EIP S +G+ W+ Y+D VT E L++LT EFL I +K P++LKK I + +NQ
Sbjct: 61 EIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQILEKTPNRLKK-IRNWRANQ 112
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 151
Score = 94.7 bits (235), Expect = 2e-23
Identities = 23/137 (16%), Positives = 52/137 (37%), Gaps = 13/137 (9%)
Query: 19 KEQLENTPSRKCGYDAEKELSCRQQAANLIQDMGQRLQVT--QLCINTAIVYMHRFYVFH 76
+ P+ + +E++ + + + + + + TA +Y RFY+ +
Sbjct: 25 VANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNN 84
Query: 77 SFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQEQAQEI 136
S ++H I FLA KV+E + + ++ ++I
Sbjct: 85 SVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLG-----------QEKALEQI 133
Query: 137 VVNENVLLQTLGFDVGI 153
+ E +L+Q L F + +
Sbjct: 134 LEYELLLIQQLNFHLIV 150
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId:
9606]}
Length = 110
Score = 87.7 bits (217), Expect = 2e-21
Identities = 24/104 (23%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 154 EHPHTYVVKCCHLVRASK----DLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACK 209
EHP+ +++K ++ K L Q ++ ++SL TT+ LQ+ ++A ++LA +
Sbjct: 1 EHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLC-TTLSLQWEPEIIAVAVMYLAGR 59
Query: 210 WANWEIPQSNE---GRKWFWYIDKEVTQEQLEQLTEEFLAIFDK 250
+EI + R+W+ ++V + LE + + L ++ +
Sbjct: 60 LCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQ 103
Score = 26.0 bits (57), Expect = 8.2
Identities = 8/52 (15%), Positives = 19/52 (36%)
Query: 46 NLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKV 97
+ + Q + A +++ Q+ IA A ++LA ++
Sbjct: 9 KYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRL 60
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68
[TaxId: 33708]}
Length = 141
Score = 51.5 bits (123), Expect = 2e-08
Identities = 20/140 (14%), Positives = 45/140 (32%), Gaps = 20/140 (14%)
Query: 16 YFTKEQLENTPSRKCGYDAEKELS--CRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFY 73
+ + E +R G + ++ + R+ + + + L+ A+ + +
Sbjct: 18 MIYRSERE-HDARMVGVNVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELF 76
Query: 74 VFHSFTQFHRNSIATAALFLAAKVEE-QPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQEQ 132
+ + + S A AL +A KV P K + +
Sbjct: 77 LSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCG----------------GATT 120
Query: 133 AQEIVVNENVLLQTLGFDVG 152
A +++ E L TL +
Sbjct: 121 ADKLLTLEVKSLDTLSWVAD 140
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's
sarcoma-associated herpesvirus [TaxId: 37296]}
Length = 132
Score = 50.3 bits (120), Expect = 4e-08
Identities = 20/143 (13%), Positives = 42/143 (29%), Gaps = 29/143 (20%)
Query: 10 HSPDRWYFTKEQLENTPSRKCGYDAEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYM 69
F Q T R+ + + Q + + A+ +
Sbjct: 17 FLTSDSVFGTFQQSLTSH------------MRKLLGTWMFSVCQEYNLEPNVVALALNLL 64
Query: 70 HRFYVFHSFTQFHRNSIATAALFLAAKVEE-QPRKLEHVIRVAQLCLFKNQPPLDPRSEA 128
R + ++ H +A L +A+K+ P + A ++
Sbjct: 65 DRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAA--------------DS 110
Query: 129 YQEQAQEIVVNENVLLQTLGFDV 151
+ QE++ E LL+ L +
Sbjct: 111 F--SRQELIDQEKELLEKLAWRT 131
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri
[TaxId: 10381]}
Length = 127
Score = 48.3 bits (115), Expect = 2e-07
Identities = 16/141 (11%), Positives = 44/141 (31%), Gaps = 29/141 (20%)
Query: 12 PDRWYFTKEQLENTPSRKCGYDAEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHR 71
P + Q E T R + + + ++ + ++ + R
Sbjct: 14 PKFTSLWEIQTEVTVDN------------RTILLTWMHLLCESFELDKSVFPLSVSILDR 61
Query: 72 FYVFHSFTQFHRNSIATAALFLAAKVEE-QPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQ 130
+ T+ I A + + +K+ +P + + ++ + +
Sbjct: 62 YLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSC--------------DCF- 106
Query: 131 EQAQEIVVNENVLLQTLGFDV 151
E++ E +L+ L +D
Sbjct: 107 -TNLELINQEKDILEALKWDT 126
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId:
9913]}
Length = 128
Score = 41.5 bits (97), Expect = 4e-05
Identities = 26/135 (19%), Positives = 59/135 (43%), Gaps = 20/135 (14%)
Query: 21 QLENTPSRKCGY-DAEKEL--SCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHS 77
++E K GY + ++ S R + + ++G+ ++ ++ A+ Y+ RF S
Sbjct: 8 EMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMS 67
Query: 78 FTQFHRNSIATAALFLAAKVEE-QPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQEQAQEI 136
+ + TAA+ LA+K EE P ++ + + +++
Sbjct: 68 VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTY----------------TKKQV 111
Query: 137 VVNENVLLQTLGFDV 151
+ E+++L+ L FD+
Sbjct: 112 LRMEHLVLKVLTFDL 126
Score = 26.8 bits (59), Expect = 4.8
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 6/94 (6%)
Query: 159 YVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCLQYRST---VVACFCIHLACKWANWEI 215
+V V L + +A N + + +V + LA K+
Sbjct: 33 ILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYP 92
Query: 216 PQSNEGRKWFWYIDKEVTQEQLEQLTEEFLAIFD 249
P+ E + + D T++Q+ ++ L +
Sbjct: 93 PEVAE---FVYITDDTYTKKQVLRMEHLVLKVLT 123
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 140
Score = 40.0 bits (93), Expect = 2e-04
Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 21/136 (15%)
Query: 21 QLENTPSRKCGY-DAEKELS--CRQQAANLIQDMGQRLQVTQLCINTAIVYMHRF-YVFH 76
E T R + + L R + + ++ + ++ + A + R+
Sbjct: 20 NKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQE 79
Query: 77 SFTQFHRNSIATAALFLAAKVEE-QPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQEQAQE 135
+ + I ++LF+AAK+EE P KL V E
Sbjct: 80 NVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGAC----------------SGDE 123
Query: 136 IVVNENVLLQTLGFDV 151
I+ E ++++ L + +
Sbjct: 124 ILTMELMIMKALKWRL 139
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 34.9 bits (80), Expect = 0.008
Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 6/72 (8%)
Query: 171 KDLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDK 230
+ L +T+ + T L Y + +A I + A +
Sbjct: 24 EILRKTADDFLNRIAL-TDAYLLYTPSQIALTAILSSASRAGITMESYLSESLML----- 77
Query: 231 EVTQEQLEQLTE 242
+ + L QL +
Sbjct: 78 KENRTCLSQLLD 89
>d3c8wa1 d.347.1.1 (A:5-254) Acetoacetate decarboxylase {Legionella
pneumophila [TaxId: 446]}
Length = 250
Score = 28.3 bits (63), Expect = 2.9
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 448 PHEVRKNGHDLPVPKPHPPPPPPPPPY 474
V N +P P+ P P +
Sbjct: 6 LEGVIDNEFSMPAPRWLNTYPAGPYRF 32
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia
virus type 2 [TaxId: 11909]}
Length = 137
Score = 26.7 bits (59), Expect = 5.3
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 425 PLRKHEPINPRMMMNKPQSKPVIPHEVRKNGHDLPVPKPHPPPPPPPPPYMSAAKLPPP 483
P R E IN ++ K Q P P +P P PPPPPP A +PPP
Sbjct: 78 PGRVVEIIN---ILVKNQVSPSAPAA------PVPTPICPTTTPPPPPPPSPEAHVPPP 127
>d1nu9c1 a.8.6.1 (C:1-145) Staphylocoagulase {Staphylococcus aureus
[TaxId: 1280]}
Length = 145
Score = 26.8 bits (59), Expect = 6.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 620 KKKKKHKEKDKDRDKKHKEKKKHKDDKHKD 649
++KK E+ K KK+KE+ K K
Sbjct: 75 ERKKVQYEEYKKLYKKYKEENPTSKVKMKT 104
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 248
Score = 26.9 bits (59), Expect = 7.5
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 621 KKKKHKE---KDKDRDKKHKEKKKHKDDKHKDKRKDKHRES 658
KK E K DK E KK + K K+ +
Sbjct: 120 LKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDK 160
>d1n7va_ b.126.1.1 (A:) Adsorption protein p2 {Bacteriophage prd1
[TaxId: 10658]}
Length = 555
Score = 27.4 bits (60), Expect = 7.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 457 DLPVPKPHPPPPPPPPP 473
D PV +P+P PP PPP
Sbjct: 193 DRPVTEPNPNWPPLPPP 209
>d3bbda1 c.116.1.6 (A:2-205) Ribosome biogenesis protein NEP1
{Methanococcus jannaschii [TaxId: 2190]}
Length = 204
Score = 26.7 bits (59), Expect = 7.7
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 611 PHESHSQHPKKKKKHKEKDKDRDKKHKEKKKHKDDKHKDKRKD 653
P E + +K + +K D + +K +K KD R D
Sbjct: 15 PEEIKN-KIRKSRVYKYDILDSNYHYKAMEKLKDK-EMRGRPD 55
>d2v8qa1 d.129.6.2 (A:396-548) 5'-AMP-activated protein kinase
catalytic subunit alpha-1, AMPK1 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 153
Score = 26.1 bits (57), Expect = 9.9
Identities = 8/63 (12%), Positives = 15/63 (23%)
Query: 310 GPPPEYRKLMAGGRDMNSRSSTSSTAVPINSMPSANTNKPPAHVFQTSSSSRVPPPPPPH 369
E + A + S S+ S + + + +S P P
Sbjct: 73 DEITEAKSGTATPQRSGSISNYRSCQRSDSDAEAQGKPSEVSLTSSVTSLDSSPVDVAPR 132
Query: 370 HHH 372
Sbjct: 133 PGS 135
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.128 0.382
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,683,365
Number of extensions: 128078
Number of successful extensions: 545
Number of sequences better than 10.0: 1
Number of HSP's gapped: 506
Number of HSP's successfully gapped: 46
Length of query: 730
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 638
Effective length of database: 1,144,436
Effective search space: 730150168
Effective search space used: 730150168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.6 bits)