Query psy11276
Match_columns 189
No_of_seqs 164 out of 917
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 22:43:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11276.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11276hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03098 An_peroxidase: Animal 100.0 3E-62 6.4E-67 449.3 10.1 184 2-189 135-326 (530)
2 KOG2408|consensus 100.0 4.6E-59 1E-63 438.1 13.7 180 3-189 295-486 (719)
3 PLN02283 alpha-dioxygenase 100.0 6.9E-53 1.5E-57 391.9 12.8 168 6-188 203-394 (633)
4 PF10929 DUF2811: Protein of u 75.0 2.7 5.8E-05 27.8 2.1 19 97-115 16-34 (57)
5 COG4362 Nitric oxide synthase, 61.1 22 0.00047 30.9 5.4 94 88-184 56-156 (355)
6 PF03690 UPF0160: Uncharacteri 40.6 51 0.0011 29.1 4.6 41 93-133 144-194 (318)
7 PLN00107 FAD-dependent oxidore 40.1 9.5 0.00021 32.7 -0.0 46 87-137 160-205 (257)
8 PF14043 WVELL: WVELL protein 38.2 52 0.0011 22.8 3.4 27 90-120 3-29 (75)
9 TIGR01677 pln_FAD_oxido plant- 34.1 15 0.00033 34.8 0.3 55 78-137 447-511 (557)
10 PF12758 DUF3813: Protein of u 33.5 30 0.00064 23.3 1.6 15 108-122 3-17 (63)
11 PLN02465 L-galactono-1,4-lacto 31.3 16 0.00035 34.8 0.0 39 93-137 534-572 (573)
12 PF03206 NifW: Nitrogen fixati 30.9 1.1E+02 0.0024 22.6 4.4 46 79-127 31-76 (105)
13 COG4286 Uncharacterized conser 27.6 1.1E+02 0.0023 26.8 4.3 38 94-133 145-190 (306)
14 PF02757 YLP: YLP motif; Inte 26.6 21 0.00046 14.9 -0.0 6 128-133 2-7 (9)
15 PF11691 DUF3288: Protein of u 25.5 1E+02 0.0022 22.3 3.2 41 78-118 26-73 (90)
16 PF10835 DUF2573: Protein of u 25.3 46 0.00099 23.4 1.4 33 92-126 38-70 (82)
17 PF11522 Pik1: Yeast phosphati 25.0 42 0.0009 21.6 1.1 19 110-129 3-21 (51)
18 KOG0030|consensus 23.3 78 0.0017 24.9 2.5 38 96-135 35-76 (152)
19 PF02477 Nairo_nucleo: Nucleoc 21.7 1.7E+02 0.0036 26.6 4.5 40 88-127 195-264 (442)
20 KOG2948|consensus 20.7 1.3E+02 0.0028 26.5 3.6 53 95-147 151-214 (327)
No 1
>PF03098 An_peroxidase: Animal haem peroxidase; InterPro: IPR002007 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. On the basis of sequence similarity, a number of animal haem peroxidases can be categorised as members of a superfamily: myeloperoxidase (MPO); eosinophil peroxidase (EPO); lactoperoxidase (LPO); thyroid peroxidase (TPO); prostaglandin H synthase (PGHS); and peroxidasin [, , ]. MPO plays a major role in the oxygen-dependent microbicidal system of neutrophils. EPO from eosinophilic granulocytes participates in immunological reactions, and potentiates tumor necrosis factor (TNF) production and hydrogen peroxide release by human monocyte-derived macrophages [, ]. In the main, MPO (and possibly EPO) utilises Cl-ions and H2O2 to form hypochlorous acid (HOCl), which can effectively kill bacteria or parasites. In secreted fluids, LPO catalyses the oxidation of thiocyanate ions (SCN-) by H2O2, producing the weak oxidising agent hypothiocyanite (OSCN-), which has bacteriostatic activity []. TPO uses I- ions and H2O2 to generate iodine, and plays a central role in the biosynthesis of thyroid hormones T(3) and T(4). To date, the 3D structures of MPO and PGHS have been reported. MPO is a homodimer: each monomer consists of a light (A or B) and a heavy (C or D) chain resulting from post-translational excision of 6 residues from the common precursor. Monomers are linked by a single inter-chain disulphide. Each monomer includes a bound calcium ion []. PGHS exists as a symmetric dimer, each monomer of which consists of 3 domains: an N-terminal epidermal growth factor (EGF) like module; a membrane-binding domain; and a large C-terminal catalytic domain containing the cyclooxygenase and the peroxidase active sites. The catalytic domain shows striking structural similarity to MPO. The cyclooxygenase active site, which catalyses the formation of prostaglandin G2 (PGG2) from arachidonic acid, resides at the apex of a long hydrophobic channel, extending from the membrane-binding domain to the centre of the molecule. The peroxidase active site, which catalyses the reduction of PGG2 to PGH2, is located on the other side of the molecule, at the haem binding site []. Both MPO and the catalytic domain of PGHS are mainly alpha-helical, 19 helices being identified as topologically and spatially equivalent; PGHS contains 5 additional N-terminal helices that have no equivalent in MPO. In both proteins, three Asn residues in each monomer are glycosylated.; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1FE2_A 1PGG_B 1PGF_A 3N8W_B 1IGZ_A 3KK6_B 3N8Z_A 1Q4G_A 1PTH_A 1EQH_A ....
Probab=100.00 E-value=3e-62 Score=449.33 Aligned_cols=184 Identities=52% Similarity=0.911 Sum_probs=148.0
Q ss_pred CCCCcccccccCCCcccCccCCCCCHhhhhhhhc-CC-CCccccc----cCCCCCCCCCCCCC--CCCccccccccCCCC
Q psy11276 2 QGFGPREQINQNSAYLDGSLIYGEHACQAKDLRS-YD-GKLNVTL----MPGRKDLLPNTPTH--PECRSRYCFVAGDGR 73 (189)
Q Consensus 2 ~~~~~req~N~~T~~lD~S~vYGs~~~~~~~LR~-~~-G~L~~~~----~~~~~~~lP~~~~~--~~c~~~~cf~~GD~R 73 (189)
|++ +|||+|++|+|||||+|||++++.+..||+ ++ |+|++.. ...+..+||..... ..| .||++||.|
T Consensus 135 ~~~-~req~N~~T~~lD~S~vYGs~~~~~~~LR~~~~~G~L~~~~~~~~~~~~~~~lp~~~~~~~~~~---~~f~~GD~R 210 (530)
T PF03098_consen 135 CSL-PREQINQATSYLDLSQVYGSSEEQARRLRSSFKGGKLKSDNGEFPPPNGGGLLPSDDPPTDSGC---RCFLAGDPR 210 (530)
T ss_dssp SSS-STTBEE-STSSSS-HHHH-SSHHHHHHTBESSTTTEB--ETSSEEBBTTBES--B-TSCSSGHH---GSB-TSSTT
T ss_pred Ccc-chhhhccccceeecccccCCCHHHHHHhhcchhhhhhhcccccccccCCCCCCCCCcccccccc---ccccccccc
Confidence 445 999999999999999999999999999999 88 9999732 23456788877521 123 699999999
Q ss_pred CCcchhHHHHHHHHHhhhHHHHHHHHhhCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhhhccchhhhhhCCcCCCCCCC
Q psy11276 74 ASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYY 153 (189)
Q Consensus 74 ~ne~~~l~~lhtlf~ReHNria~~L~~~np~w~de~lfqeAR~iv~a~~Q~I~y~E~LP~llG~~~~~~~~l~~~~~g~~ 153 (189)
+||+|+|++|||+|+|||||||++|++.||+|+||+||||||+||+|+||||||+||||+|||++.++++.+.....|+|
T Consensus 211 ~ne~~~l~~lhtlflReHNria~~L~~~np~w~de~lFqeAR~iv~a~~Q~Ivy~E~LP~llG~~~~~~~~~~~~~~g~~ 290 (530)
T PF03098_consen 211 VNENPGLTALHTLFLREHNRIADELKKINPHWDDERLFQEARRIVIAQYQHIVYNEYLPALLGPEAMNKFLLPPLNNGYY 290 (530)
T ss_dssp TTSBHHHHHHHHHHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHHHHTTHHHHHGHGGHHHHS-G----GCG
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHhhhhHhhhhhhhcchhhhhhccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888776667789
Q ss_pred CCCCCCCCCchHHHHHHHHHHhhhccccCCccCCCC
Q psy11276 154 KGYNDNCKPNIMTEFATAAYRIGHSLLRPFIPRLGK 189 (189)
Q Consensus 154 ~gY~~~~~p~i~~EFa~AA~RfgHs~i~~~~~~~~~ 189 (189)
.+|+++++|+|++|||+||||||||||++.+.+.++
T Consensus 291 ~~y~~~~~~~i~~EFa~aA~RfgHs~i~~~~~~~~~ 326 (530)
T PF03098_consen 291 KGYDPSVDPSISNEFAAAAYRFGHSMIPDTYDRWDE 326 (530)
T ss_dssp TTS-TTS--S-BTTH-HHHGGGGGGGS-SEEEEBTT
T ss_pred cCCCCCCCCchhHHHHHHHHHhhheeehhhhhhccc
Confidence 999999999999999999999999999999988753
No 2
>KOG2408|consensus
Probab=100.00 E-value=4.6e-59 Score=438.10 Aligned_cols=180 Identities=53% Similarity=0.946 Sum_probs=160.4
Q ss_pred CCCcccccccCCCcccCccCCCCCHhhhhhhhcCC-C--Cccccc--cCCCCCCCCCCCC-CCCCc--c----ccccccC
Q psy11276 3 GFGPREQINQNSAYLDGSLIYGEHACQAKDLRSYD-G--KLNVTL--MPGRKDLLPNTPT-HPECR--S----RYCFVAG 70 (189)
Q Consensus 3 ~~~~req~N~~T~~lD~S~vYGs~~~~~~~LR~~~-G--~L~~~~--~~~~~~~lP~~~~-~~~c~--~----~~cf~~G 70 (189)
++++|||+|++|+|||+|.||||+++.+.+||.|+ | +|+.+. ...++.++|.+.+ ...|. + ..||.+|
T Consensus 295 ~~~~reQlNq~T~~lD~S~IYGss~~~~~~lR~f~~~~g~l~~~~~~~~~~~~~lP~~~~~~~~c~~~~~~~~~~cf~aG 374 (719)
T KOG2408|consen 295 NLGPREQLNQLTSFLDASVIYGSSDEDARKLRLFKDGKGLLRVDTGLFENGRPLLPFSTDPPNSCRSKPPGAPKPCFTAG 374 (719)
T ss_pred cCChhhhhccccccccchhccCCCHHHHHHHhcccCcccceeecccccccCcccCCCCCCCCccccccCCCCCCcccccC
Confidence 68899999999999999999999999999999998 4 555542 1256778888754 34686 2 5799999
Q ss_pred CCCCCcchhHHHHHHHHHhhhHHHHHHHHhhCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhhhccchhhhhhCCcCCCC
Q psy11276 71 DGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPT 150 (189)
Q Consensus 71 D~R~ne~~~l~~lhtlf~ReHNria~~L~~~np~w~de~lfqeAR~iv~a~~Q~I~y~E~LP~llG~~~~~~~~l~~~~~ 150 (189)
|.|+|++|+|+++||+|+|||||||++|+..||+|+||+|||||||||+|++|||||+||||.+||.. ++.. .
T Consensus 375 D~R~~~~pgL~~~hti~lREHNRiA~~Lk~~np~W~dE~lfQeaRkI~~A~~q~Ity~e~LP~ilG~~------~~~~-~ 447 (719)
T KOG2408|consen 375 DERANEQPGLAALHTLFLREHNRIATELKALNPHWSDERLFQEARKIVGAQVQHITYNEYLPKLLGAP------LKVS-L 447 (719)
T ss_pred ccccccCcchHHHHHHHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHhhhhHHhhhhhhcCcc------cccC-C
Confidence 99999999999999999999999999999999999999999999999999999999999999999921 1121 4
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHhhhccccCCccCCCC
Q psy11276 151 GYYKGYNDNCKPNIMTEFATAAYRIGHSLLRPFIPRLGK 189 (189)
Q Consensus 151 g~~~gY~~~~~p~i~~EFa~AA~RfgHs~i~~~~~~~~~ 189 (189)
|+|.||+|+++|+|++|||+||||||||||++.+.|+|+
T Consensus 448 g~~~gY~~~~dp~IsneFataAfRfgHsli~~~~~~l~~ 486 (719)
T KOG2408|consen 448 GGYRGYDPNVDPTISNEFATAAFRFGHSLIPPFFQRLDE 486 (719)
T ss_pred ccccCcCCCCChhhhhhhhHHHHhhhcccCchhhhhhcc
Confidence 889999999999999999999999999999999999885
No 3
>PLN02283 alpha-dioxygenase
Probab=100.00 E-value=6.9e-53 Score=391.92 Aligned_cols=168 Identities=28% Similarity=0.489 Sum_probs=144.1
Q ss_pred cccccccCCCcccCccCCCCCHhhhhhhhcCC-CCccccccCCCCCCCCCCCCCCCCccccccccCCCCCCcchhHHHHH
Q psy11276 6 PREQINQNSAYLDGSLIYGEHACQAKDLRSYD-GKLNVTLMPGRKDLLPNTPTHPECRSRYCFVAGDGRASEQPGLTAMH 84 (189)
Q Consensus 6 ~req~N~~T~~lD~S~vYGs~~~~~~~LR~~~-G~L~~~~~~~~~~~lP~~~~~~~c~~~~cf~~GD~R~ne~~~l~~lh 84 (189)
+|+|+|++|||||+|+||||+++++++||+++ |||+++.. .++|... ..|+++||.| |++|+|++||
T Consensus 203 ~~~qiN~~Ts~lD~S~IYGss~~~~~~LRtf~~GkLk~~~~----~~l~~~~-------~~~~~~Gd~r-n~~pGL~~lh 270 (633)
T PLN02283 203 KTGSLNIRTPWWDGSVIYGSNEKGLRRVRTFKDGKLKISED----GLLLHDE-------DGIPISGDVR-NSWAGVSLLQ 270 (633)
T ss_pred CccccccccceeecccccCCCHHHHHhhhCCCCCccCcCCC----CCCCCCc-------cCCcccCccc-cccHHHHHHH
Confidence 89999999999999999999999999999999 99998532 2555442 2599999999 7899999999
Q ss_pred HHHHhhhHHHHHHHHhhCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhhhccchhh------hhhCCcCC----------
Q psy11276 85 TILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNEFLPRLLGLNAV------NLYGLKLS---------- 148 (189)
Q Consensus 85 tlf~ReHNria~~L~~~np~w~de~lfqeAR~iv~a~~Q~I~y~E~LP~llG~~~~------~~~~l~~~---------- 148 (189)
|||+|||||||++|+++||+|+||+||||||+||+|+||+|||+||||.|||.+.+ +++||...
T Consensus 271 tLF~REHNrIad~L~~~nP~w~DE~LFQeAR~Iv~A~~q~I~~~EylP~iLg~~~~~~~~~~~w~gllg~~~~~~~g~~~ 350 (633)
T PLN02283 271 ALFVKEHNAVCDALKEEYPDFDDEELYRHARLVTSAVIAKIHTIDWTVELLKTDTLLAGMRANWYGLLGKKFKDTFGHIG 350 (633)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHheeeeeeeccHHhcCCcccccccccccccccchhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999998765 34444321
Q ss_pred ---CCCCCCCC----CCCCCCchHHHHHHHHHHhhhccccCCccCCC
Q psy11276 149 ---PTGYYKGY----NDNCKPNIMTEFATAAYRIGHSLLRPFIPRLG 188 (189)
Q Consensus 149 ---~~g~~~gY----~~~~~p~i~~EFa~AA~RfgHs~i~~~~~~~~ 188 (189)
..| |.|| ++.++++|++|| +||||| ||+|++.+.+.|
T Consensus 351 ~~~~~g-~~gy~~~~~~~v~~~is~EF-~aaYR~-Hslip~~~~~~~ 394 (633)
T PLN02283 351 GPILSG-LVGLKKPNNHGVPYSLTEEF-TSVYRM-HSLLPDHLILRD 394 (633)
T ss_pred cccccc-ccCCCccccCCCCcchhHHH-HHHHhh-hhcCCCceeccc
Confidence 122 2344 457889999999 579998 999999987654
No 4
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=75.02 E-value=2.7 Score=27.78 Aligned_cols=19 Identities=32% Similarity=0.812 Sum_probs=15.5
Q ss_pred HHHhhCCCCCchHHHHHHH
Q psy11276 97 QLVQINPHWNDEQLFQHAR 115 (189)
Q Consensus 97 ~L~~~np~w~de~lfqeAR 115 (189)
..-+.||.||-.+||+.|=
T Consensus 16 ~fie~hP~WDQ~Rl~~aAL 34 (57)
T PF10929_consen 16 DFIETHPNWDQYRLFQAAL 34 (57)
T ss_pred HHHHcCCCchHHHHHHHHH
Confidence 3445799999999999984
No 5
>COG4362 Nitric oxide synthase, oxygenase domain [Inorganic ion transport and metabolism / Amino acid transport and metabolism]
Probab=61.15 E-value=22 Score=30.91 Aligned_cols=94 Identities=19% Similarity=0.242 Sum_probs=50.8
Q ss_pred HhhhHHHHHHHHhhCCCCCchHHHHHHHHHHHHHhhhhhhhh----hhhhh--ccchhh-hhhCCcCCCCCCCCCCCCCC
Q psy11276 88 MREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNE----FLPRL--LGLNAV-NLYGLKLSPTGYYKGYNDNC 160 (189)
Q Consensus 88 ~ReHNria~~L~~~np~w~de~lfqeAR~iv~a~~Q~I~y~E----~LP~l--lG~~~~-~~~~l~~~~~g~~~gY~~~~ 160 (189)
+|.-||+.-+|-=..-+--|-+=-+.+..+-.|.+|||++-- -.|.| .|+..- +.|+- +---|-||+.++
T Consensus 56 WRNSnRCiGRLfWesL~ViD~Rdl~t~e~~~eal~~Hi~~Atn~GkirP~Isvf~P~~~~~iwN~---QLIRYAgye~di 132 (355)
T COG4362 56 WRNSNRCIGRLFWESLNVIDLRDLNTEEEVYEALLQHITDATNGGKIRPTISVFGPGVRLKIWNP---QLIRYAGYENDI 132 (355)
T ss_pred hhcccchHHHHHHhhcccchhhhcccHHHHHHHHHHHHHhhccCCeecceEEEeCCCCCccccCH---HHHhhhcccccC
Confidence 455666655553211111122223334445567899999752 23332 122111 01110 011378998878
Q ss_pred CCchHHHHHHHHHHhhhccccCCc
Q psy11276 161 KPNIMTEFATAAYRIGHSLLRPFI 184 (189)
Q Consensus 161 ~p~i~~EFa~AA~RfgHs~i~~~~ 184 (189)
.-.|+.+|..|+-|+|-+--...|
T Consensus 133 gDP~~~~~t~~~~~lGW~g~~t~F 156 (355)
T COG4362 133 GDPISADFTDACERLGWQGEGTRF 156 (355)
T ss_pred CCccchHHHHHHHHhCCCCCCCcc
Confidence 788999999999999976544443
No 6
>PF03690 UPF0160: Uncharacterised protein family (UPF0160); InterPro: IPR003226 The function of this domain is not known, but it is found in several uncharacterised proteins and a probable metal dependent protein hydrolase.
Probab=40.56 E-value=51 Score=29.08 Aligned_cols=41 Identities=24% Similarity=0.600 Sum_probs=30.3
Q ss_pred HHHHHHHhhCCCCCch-------HHHHHHHHHHHHHhhhhhh---hhhhhh
Q psy11276 93 RLAEQLVQINPHWNDE-------QLFQHARRIMVGQWQHIVY---NEFLPR 133 (189)
Q Consensus 93 ria~~L~~~np~w~de-------~lfqeAR~iv~a~~Q~I~y---~E~LP~ 133 (189)
-+...++..||.|+++ +-|.+|=.+++.++..-+. .-|||+
T Consensus 144 ~ls~~V~~~Np~w~~~~~~~~~~~~F~~A~~l~~~~f~~~v~~~~~~wlpA 194 (318)
T PF03690_consen 144 SLSSRVSRLNPSWNEPDDDEDEDERFEKAMELAGEEFENRVKYYAKSWLPA 194 (318)
T ss_pred CHHHHHHHhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence 3456677899999863 6899999999888775443 356776
No 7
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=40.10 E-value=9.5 Score=32.65 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=37.5
Q ss_pred HHhhhHHHHHHHHhhCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy11276 87 LMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNEFLPRLLGL 137 (189)
Q Consensus 87 f~ReHNria~~L~~~np~w~de~lfqeAR~iv~a~~Q~I~y~E~LP~llG~ 137 (189)
|-+.||.-++.|.+..|.|+| |.+.|+- --=+.+-.||||-.+||.
T Consensus 160 WGK~h~l~~~~l~~lYPr~~d---FlavR~~--lDP~G~F~N~yl~rllg~ 205 (257)
T PLN00107 160 WGKNRNAAFDGAIAKYKKAGE---FLKVKER--LDPEGLFSSEWSDKILGL 205 (257)
T ss_pred chhccCCCHHHHHHHCcCHHH---HHHHHHH--hCCCCccCCHHHHHHhCc
Confidence 678899999999999999974 6676663 345678889999999986
No 8
>PF14043 WVELL: WVELL protein
Probab=38.16 E-value=52 Score=22.85 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=21.3
Q ss_pred hhHHHHHHHHhhCCCCCchHHHHHHHHHHHH
Q psy11276 90 EHNRLAEQLVQINPHWNDEQLFQHARRIMVG 120 (189)
Q Consensus 90 eHNria~~L~~~np~w~de~lfqeAR~iv~a 120 (189)
.+.|++.+|...||..+ |.+||-+|.-
T Consensus 3 ~~e~Lt~~LlekN~~Ls----~~qArtWVEl 29 (75)
T PF14043_consen 3 YFERLTNELLEKNPMLS----YEQARTWVEL 29 (75)
T ss_pred HHHHHHHHHHHhCCCCC----HHHHHHHHHH
Confidence 36799999999999877 5568877753
No 9
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=34.06 E-value=15 Score=34.76 Aligned_cols=55 Identities=11% Similarity=0.245 Sum_probs=42.3
Q ss_pred hhHHHHHHH----------HHhhhHHHHHHHHhhCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy11276 78 PGLTAMHTI----------LMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNEFLPRLLGL 137 (189)
Q Consensus 78 ~~l~~lhtl----------f~ReHNria~~L~~~np~w~de~lfqeAR~iv~a~~Q~I~y~E~LP~llG~ 137 (189)
+.+..+--+ |-+.|+..++.|++..|.|+| |.+.|+-. -=+.+-.|+||-.+||.
T Consensus 447 ~~f~~~E~i~l~~yggRPHWGK~h~~~~~~l~~~YP~~~d---F~alR~~~--DP~g~F~N~yl~~l~~~ 511 (557)
T TIGR01677 447 DVIEEIEQMAFFKYGALPHWGKNRNLAFDGVIRKYPNADK---FLKVKDSY--DPKGLFSSEWSDEILGI 511 (557)
T ss_pred HHHHHHHHHHHhhcCCCCCccccccchHHHHHHhCCCHHH---HHHHHHhc--CCCCccCCHHHHHHhCc
Confidence 455666665 677899999999999999965 66666633 34678889999999986
No 10
>PF12758 DUF3813: Protein of unknown function (DUF3813); InterPro: IPR024217 This entry represents a family of Bacillus proteins. Their function is unknown.
Probab=33.47 E-value=30 Score=23.30 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHh
Q psy11276 108 EQLFQHARRIMVGQW 122 (189)
Q Consensus 108 e~lfqeAR~iv~a~~ 122 (189)
.+|||+||+.|....
T Consensus 3 N~LFqqAr~aV~~a~ 17 (63)
T PF12758_consen 3 NRLFQQARDAVEQAV 17 (63)
T ss_pred chHHHHHHHHHHHHH
Confidence 579999999997443
No 11
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=31.33 E-value=16 Score=34.78 Aligned_cols=39 Identities=28% Similarity=0.395 Sum_probs=27.8
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy11276 93 RLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNEFLPRLLGL 137 (189)
Q Consensus 93 ria~~L~~~np~w~de~lfqeAR~iv~a~~Q~I~y~E~LP~llG~ 137 (189)
..+++|++..| |+| |.++|+-+ -=|.|-.|+||-.++|.
T Consensus 534 ~~~~~L~~~YP-~d~---F~~~R~~l--DP~g~f~N~~L~~lf~~ 572 (573)
T PLN02465 534 ALRERLRKRFP-VDA---FNKARKEL--DPKGILSNNLLEKLFPK 572 (573)
T ss_pred cCHHHHHhhCC-HHH---HHHHHHHh--CCCCccCCHHHHHhhCC
Confidence 77777777777 754 77777743 44677778888887764
No 12
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=30.89 E-value=1.1e+02 Score=22.55 Aligned_cols=46 Identities=22% Similarity=0.326 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhhhHHHHHHHHhhCCCCCchHHHHHHHHHHHHHhhhhhh
Q psy11276 79 GLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVY 127 (189)
Q Consensus 79 ~l~~lhtlf~ReHNria~~L~~~np~w~de~lfqeAR~iv~a~~Q~I~y 127 (189)
.+.-+|+ .=|+|-+|+.. ..++.-+++++++.+|.....-||..+-
T Consensus 31 ~V~RLHI-LkrF~~yL~~~--~~~~~~~e~~~~~~~R~~L~~AY~dFv~ 76 (105)
T PF03206_consen 31 NVNRLHI-LKRFGQYLRAA--DFAPGLSEEEDWAAYRRALERAYQDFVT 76 (105)
T ss_pred HHhhHHH-HHHHHHHHHhc--cCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 3445664 46888888876 2237778999999999999998886653
No 13
>COG4286 Uncharacterized conserved protein related to MYG1 family [Function unknown]
Probab=27.59 E-value=1.1e+02 Score=26.80 Aligned_cols=38 Identities=26% Similarity=0.559 Sum_probs=30.6
Q ss_pred HHHHHHhhCCCCCch--------HHHHHHHHHHHHHhhhhhhhhhhhh
Q psy11276 94 LAEQLVQINPHWNDE--------QLFQHARRIMVGQWQHIVYNEFLPR 133 (189)
Q Consensus 94 ia~~L~~~np~w~de--------~lfqeAR~iv~a~~Q~I~y~E~LP~ 133 (189)
+.+.+...||.|+|| +-++.|++.+...+-.|+ -|||.
T Consensus 145 l~~iv~~~np~~~~e~~~d~~F~~al~~a~~~l~~~~~~~~--~w~~a 190 (306)
T COG4286 145 LPDIVESFNPDWSDEDADDEGFLEALAFASDFLDNLFKTIV--SWLRA 190 (306)
T ss_pred hHHHHHhcCCCcCCCCcchHHHHHHHHHHHHHHHHHHHHHH--hhhHH
Confidence 778888899999873 466778888888888888 77776
No 14
>PF02757 YLP: YLP motif; InterPro: IPR004019 The YLP motif is found in one or several copies in various Drosophila proteins. Its function is unknown, however the presence of completely conserved tyrosine residues and its presence in the human Erbb-2 and ErbB-4 receptor protein-tyrosine kinases (2.7.10.1 from EC) may suggest it could be a substrate for tyrosine kinases. ErbBs (1-4) are single-pass transmembrane proteins that activate a wide variety of signalling pathways, including those involved in proliferation, migration, differentiation, survival, and apoptosis; they are frequently misregulated in cancer []. ErbB-2 is an essential component of a neuregulin-receptor complex, although neuregulins do not interact with it alone. ErbB-4 specifically binds and is activated by neuregulins, NRG-2, NRG-3, heparin-binding EGF-like growth factor, betacellulin and NTAK [].
Probab=26.57 E-value=21 Score=14.95 Aligned_cols=6 Identities=67% Similarity=1.287 Sum_probs=3.8
Q ss_pred hhhhhh
Q psy11276 128 NEFLPR 133 (189)
Q Consensus 128 ~E~LP~ 133 (189)
+||||-
T Consensus 2 ~eYLpP 7 (9)
T PF02757_consen 2 NEYLPP 7 (9)
T ss_pred ccccCC
Confidence 477764
No 15
>PF11691 DUF3288: Protein of unknown function (DUF3288); InterPro: IPR021705 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=25.45 E-value=1e+02 Score=22.26 Aligned_cols=41 Identities=24% Similarity=0.515 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHhhhH-----HHHHHHHhhCCCC--CchHHHHHHHHHH
Q psy11276 78 PGLTAMHTILMREHN-----RLAEQLVQINPHW--NDEQLFQHARRIM 118 (189)
Q Consensus 78 ~~l~~lhtlf~ReHN-----ria~~L~~~np~w--~de~lfqeAR~iv 118 (189)
.-|+-+--|++|..| -|-+.|.++=..| +.|+||..+|.|=
T Consensus 26 ~~L~eLARL~iRY~gFPGA~diq~DL~kiL~~W~lteeeLf~kTR~I~ 73 (90)
T PF11691_consen 26 YNLAELARLRIRYQGFPGARDIQKDLDKILQKWGLTEEELFEKTREIH 73 (90)
T ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 356677778888877 2333333333345 7899999999974
No 16
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=25.33 E-value=46 Score=23.44 Aligned_cols=33 Identities=18% Similarity=0.445 Sum_probs=24.3
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHHHHHhhhhh
Q psy11276 92 NRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIV 126 (189)
Q Consensus 92 Nria~~L~~~np~w~de~lfqeAR~iv~a~~Q~I~ 126 (189)
+.||+..-.+-.||++. |-+|+.-+.+.+++|-
T Consensus 38 shiaKsMPpL~kHWN~~--~PeaK~~ik~li~~Ik 70 (82)
T PF10835_consen 38 SHIAKSMPPLAKHWNGT--YPEAKEEIKELIEEIK 70 (82)
T ss_pred HHHHHhCcHHHHhhccc--CchHHHHHHHHHHHHH
Confidence 56777666666789876 7788887777777773
No 17
>PF11522 Pik1: Yeast phosphatidylinositol-4-OH kinase Pik1; InterPro: IPR021601 Pik1 is a regulator of membrane traffic and participates in the mating-pheromone signal-transduction cascade. The protein is localised to the nucleus and cytoplasm in the Golgi. Pik1 is thought to have an actin-independent role in membrane transport []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2JU0_B.
Probab=24.97 E-value=42 Score=21.63 Aligned_cols=19 Identities=42% Similarity=0.800 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhhhhhhhh
Q psy11276 110 LFQHARRIMVGQWQHIVYNE 129 (189)
Q Consensus 110 lfqeAR~iv~a~~Q~I~y~E 129 (189)
-||.+||++ -..|+|+++.
T Consensus 3 ~Fqv~RRv~-NklQ~ilFn~ 21 (51)
T PF11522_consen 3 SFQVCRRVI-NKLQHILFNT 21 (51)
T ss_dssp TTHHHHHHH-HHHT--SS-S
T ss_pred hhHHHHHHH-HHHHHHHhCC
Confidence 489999964 5679998875
No 18
>KOG0030|consensus
Probab=23.35 E-value=78 Score=24.88 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=27.3
Q ss_pred HHHHh--hCCCCCchHHHHHHHHHHHH--Hhhhhhhhhhhhhhc
Q psy11276 96 EQLVQ--INPHWNDEQLFQHARRIMVG--QWQHIVYNEFLPRLL 135 (189)
Q Consensus 96 ~~L~~--~np~w~de~lfqeAR~iv~a--~~Q~I~y~E~LP~ll 135 (189)
+.|+. .|| ++.++-+..++-..- -.|.|++.+|||.+-
T Consensus 35 dvlRalG~nP--T~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q 76 (152)
T KOG0030|consen 35 DVLRALGQNP--TNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQ 76 (152)
T ss_pred HHHHHhcCCC--cHHHHHHHHcCcccchhhhhhhhHHHHHHHHH
Confidence 55555 466 677777766665555 459999999999984
No 19
>PF02477 Nairo_nucleo: Nucleocapsid N protein; InterPro: IPR003486 The nucleoprotein of the ssRNA negative-strand Nairovirus is an internal part of the virus particle.; GO: 0019013 viral nucleocapsid; PDB: 3U3I_A.
Probab=21.74 E-value=1.7e+02 Score=26.56 Aligned_cols=40 Identities=20% Similarity=0.485 Sum_probs=27.1
Q ss_pred HhhhHHHHHHHHh------hCCCCCc------------------------hHHHHHHHHHHHHHhhhhhh
Q psy11276 88 MREHNRLAEQLVQ------INPHWND------------------------EQLFQHARRIMVGQWQHIVY 127 (189)
Q Consensus 88 ~ReHNria~~L~~------~np~w~d------------------------e~lfqeAR~iv~a~~Q~I~y 127 (189)
.|||=-++++|+. -||.|.| .++++++|+-+...--||-=
T Consensus 195 srehv~w~re~a~gkf~~~fnppwgdink~gksgi~l~at~m~k~~eldg~~~~ed~k~~l~~l~~w~~~ 264 (442)
T PF02477_consen 195 SREHVDWGRELAAGKFQVVFNPPWGDINKAGKSGIPLAATGMAKLAELDGKKVLEDIKKTLLDLKKWVED 264 (442)
T ss_dssp ---HHHHHHHHHHT--GGGGS-SSSSTT-BSSSSBHHHHHHHHHTTT----THHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCeeEEEeCCCccccccccccCchHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHh
Confidence 3788778888876 5899965 57899999988877666643
No 20
>KOG2948|consensus
Probab=20.65 E-value=1.3e+02 Score=26.48 Aligned_cols=53 Identities=21% Similarity=0.533 Sum_probs=34.7
Q ss_pred HHHHHhhCCCCCc------hHHHHHHHHHHHHHhhh-hhh--hhhhhh--hccchhhhhhCCcC
Q psy11276 95 AEQLVQINPHWND------EQLFQHARRIMVGQWQH-IVY--NEFLPR--LLGLNAVNLYGLKL 147 (189)
Q Consensus 95 a~~L~~~np~w~d------e~lfqeAR~iv~a~~Q~-I~y--~E~LP~--llG~~~~~~~~l~~ 147 (189)
-..+.+.||+|++ ++-||+|=.+++.++-. |.+ +-|||+ ++-....+.++..+
T Consensus 151 ~~rv~~~N~~w~e~~~~~~~e~F~~Am~~vg~ef~~~v~~~~~sWlPar~~v~~ai~er~~~d~ 214 (327)
T KOG2948|consen 151 SHRVGRFNPDWNEDSDDDEDERFQRAMDLVGKEFVNSVKFYANSWLPARELVEEAIAERFDVDP 214 (327)
T ss_pred HHHHhhcCCCcccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHhcCCCC
Confidence 3566778999983 67899999999887643 333 368887 33333334455433
Done!