Query psy11276
Match_columns 189
No_of_seqs 164 out of 917
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 22:44:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11276.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11276hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d2v_C Myeloperoxidase; heme-p 100.0 1.6E-63 5.4E-68 450.3 15.8 180 3-189 45-236 (466)
2 3q9k_A Lactoperoxidase, LPO; b 100.0 1.7E-63 6E-68 460.4 14.3 180 2-189 170-363 (595)
3 1q4g_A Prostaglandin G/H synth 100.0 6.9E-54 2.3E-58 394.2 11.4 174 6-187 186-367 (553)
4 3nt1_A Prostaglandin-endoperox 100.0 1.8E-52 6E-57 386.3 9.0 171 8-186 188-366 (587)
5 3lqv_P Splicing factor 3B subu 32.7 32 0.0011 20.0 2.4 18 93-110 11-28 (39)
6 2hjd_A Quorum-sensing antiacti 25.4 32 0.0011 24.3 1.7 30 78-116 27-56 (102)
7 1rfy_A TRAM protein;, transcri 25.2 32 0.0011 24.3 1.7 30 78-116 27-56 (102)
8 3sjr_A Uncharacterized protein 23.3 71 0.0024 24.5 3.4 34 80-120 97-145 (175)
9 2mhr_A Myohemerythrin; oxygen 18.8 1.6E+02 0.0056 20.3 4.5 38 88-129 74-111 (118)
10 2ju0_B Phosphatidylinositol 4- 18.1 35 0.0012 21.2 0.6 19 110-129 4-22 (52)
No 1
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Probab=100.00 E-value=1.6e-63 Score=450.31 Aligned_cols=180 Identities=42% Similarity=0.757 Sum_probs=162.3
Q ss_pred CCCcccccccCCCcccCccCCCCCHhhhhhhhcCC---CCccccc-cC-CCCCCCCCCCC-CCCCc------cccccccC
Q psy11276 3 GFGPREQINQNSAYLDGSLIYGEHACQAKDLRSYD---GKLNVTL-MP-GRKDLLPNTPT-HPECR------SRYCFVAG 70 (189)
Q Consensus 3 ~~~~req~N~~T~~lD~S~vYGs~~~~~~~LR~~~---G~L~~~~-~~-~~~~~lP~~~~-~~~c~------~~~cf~~G 70 (189)
.++||||+|++|||||||+||||+++++.+||+++ |+|+++. .. .+..+||.+.. ...|. ...||++|
T Consensus 45 ~~~~req~N~~T~~lD~S~vYGs~~~~~~~LR~~~~~~G~Lk~~~~~~~~g~~~lP~~~~~~~~c~~~~~~~~~~cf~~G 124 (466)
T 1d2v_C 45 NITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAG 124 (466)
T ss_dssp SSSCCCBEECSCSSSSCHHHHCSSHHHHHHHBCCSSSSCCBCCCSSCCBTTBCCCCBCCCTTCSGGGGCTTTCCCCBCCS
T ss_pred CCCHHHHhhccccccccccCcCCCHHHHHHHhccCCCCCeeccCCccCCCCCcCCCCCCCCCCcccccccCCCcchhccc
Confidence 45689999999999999999999999999999985 8999864 22 46678887643 33464 24699999
Q ss_pred CCCCCcchhHHHHHHHHHhhhHHHHHHHHhhCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhhhccchhhhhhCCcCCCC
Q psy11276 71 DGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPT 150 (189)
Q Consensus 71 D~R~ne~~~l~~lhtlf~ReHNria~~L~~~np~w~de~lfqeAR~iv~a~~Q~I~y~E~LP~llG~~~~~~~~l~~~~~ 150 (189)
|.|+||+|+|++|||||+|||||||++|+++||+|+||+||||||+||+|+||||||+||||+|||++.++++ .
T Consensus 125 D~R~ne~p~l~~lhtlflReHNria~~L~~~nP~W~DE~LFqeAR~Iv~a~~Q~I~~~EyLp~ilG~~~~~~~------~ 198 (466)
T 1d2v_C 125 DTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKY------L 198 (466)
T ss_dssp STTTTSSHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH------S
T ss_pred CcccccCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHhHHHHHHHHhCchhhhhc------C
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988876 3
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHhhhccccCCccCCCC
Q psy11276 151 GYYKGYNDNCKPNIMTEFATAAYRIGHSLLRPFIPRLGK 189 (189)
Q Consensus 151 g~~~gY~~~~~p~i~~EFa~AA~RfgHs~i~~~~~~~~~ 189 (189)
|+|.||+++++|+|++|| +||||||||||++.+.++|+
T Consensus 199 ~~~~gy~~~v~p~isnEF-~aafRfgHsli~~~~~~~~~ 236 (466)
T 1d2v_C 199 PTYRSYNDSVDPRIANVF-TNAFRYGHTLIQPFMFRLDN 236 (466)
T ss_dssp CCCCCCCTTSCCSCBHHH-HHHGGGGGGGCCSEEECBCT
T ss_pred CcccCCCCCCCCchhHHH-HHHHhcccccCchhhccccc
Confidence 678999999999999999 99999999999999988764
No 2
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Probab=100.00 E-value=1.7e-63 Score=460.43 Aligned_cols=180 Identities=40% Similarity=0.680 Sum_probs=161.8
Q ss_pred CCCC--cccccccCCCcccCccCCCCCHhhhhhhhcCC---CCcccccc--CCCCCCCCCCCCC-CCCc------ccccc
Q psy11276 2 QGFG--PREQINQNSAYLDGSLIYGEHACQAKDLRSYD---GKLNVTLM--PGRKDLLPNTPTH-PECR------SRYCF 67 (189)
Q Consensus 2 ~~~~--~req~N~~T~~lD~S~vYGs~~~~~~~LR~~~---G~L~~~~~--~~~~~~lP~~~~~-~~c~------~~~cf 67 (189)
|.++ ||||+|++|||||||+||||+++++.+||+++ |+|+++.. ++|+.+||..... ..|. ...||
T Consensus 170 ~~~~~~~reQiN~~Ts~lD~S~VYGss~~~~~~LR~~~~~~G~Lk~~~~~~~~g~~~lP~~~~~~~~c~~~~~~~~~~cf 249 (595)
T 3q9k_A 170 PPYQSLAREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINTTARVPCF 249 (595)
T ss_dssp SCCCSSCCCBEECSCSSSSCHHHHCSSHHHHHHTBCCSSTTCCBCCCSSCCBTTBCCCCBCCCSSCHHHHTCTTTCCCCB
T ss_pred CCCCcchHhhhccccceeeeeeccCCCHHHHHHHhCCCCCCceeecccccCCCCccCCCCCCCCCCcccccCCCCCCccc
Confidence 5566 99999999999999999999999999999985 89998753 2567789987543 3463 24699
Q ss_pred ccCCCCCCcchhHHHHHHHHHhhhHHHHHHHHhhCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhhhccchhhhhhCCcC
Q psy11276 68 VAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNEFLPRLLGLNAVNLYGLKL 147 (189)
Q Consensus 68 ~~GD~R~ne~~~l~~lhtlf~ReHNria~~L~~~np~w~de~lfqeAR~iv~a~~Q~I~y~E~LP~llG~~~~~~~~l~~ 147 (189)
++||.|+||+|+|+++||||+|||||||++|+++||+|+||+||||||+||+|+||||||+||||+|||++ |+++
T Consensus 250 ~aGD~R~ne~p~L~~lhtlflREHNria~~L~~~nP~W~dE~LfQeAR~Iv~A~~Q~Ity~E~LP~ilG~~-~~~~---- 324 (595)
T 3q9k_A 250 LAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSE-MQKW---- 324 (595)
T ss_dssp CCSSTTTTSBHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGG-HHHH----
T ss_pred ccCCccccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHeeeeeHHHHHHHHhCch-hhhh----
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 6553
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHhhhccccCCccCCCC
Q psy11276 148 SPTGYYKGYNDNCKPNIMTEFATAAYRIGHSLLRPFIPRLGK 189 (189)
Q Consensus 148 ~~~g~~~gY~~~~~p~i~~EFa~AA~RfgHs~i~~~~~~~~~ 189 (189)
.+.|.||+++++|+|++|| +||||||||||++.+.++|+
T Consensus 325 --~~~~~gY~~~v~p~i~neF-~aafRfgHsli~~~~~~~~~ 363 (595)
T 3q9k_A 325 --IPPYQGYNNSVDPRISNVF-TFAFRFGHMEVPSTVSRLDE 363 (595)
T ss_dssp --SCSCCCCCTTSCCCCBTTH-HHHGGGGGGGCCSEEECBCT
T ss_pred --CCCccCCCCCCCCccHHHH-HHHHHhHHhhCcchhhccCc
Confidence 2458999999999999999 99999999999999998764
No 3
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=100.00 E-value=6.9e-54 Score=394.22 Aligned_cols=174 Identities=27% Similarity=0.368 Sum_probs=144.5
Q ss_pred cccccccCCCcccCccCCCCCHhhhhhhhcCC-CCccccccCCCCCCCCCCCCCCC-Cc------cccccccCCCCCCcc
Q psy11276 6 PREQINQNSAYLDGSLIYGEHACQAKDLRSYD-GKLNVTLMPGRKDLLPNTPTHPE-CR------SRYCFVAGDGRASEQ 77 (189)
Q Consensus 6 ~req~N~~T~~lD~S~vYGs~~~~~~~LR~~~-G~L~~~~~~~~~~~lP~~~~~~~-c~------~~~cf~~GD~R~ne~ 77 (189)
+.+++|++|||||||+||||+++++.+||+++ |+|+++.. .+..++|....... |. ...||++||.|+||+
T Consensus 186 ~~~~~N~~T~~lD~S~vYGs~~~~~~~LR~~~~G~Lk~~~~-~g~~~~P~~~~~~~~~~~~~~~~~~~cf~~GD~R~ne~ 264 (553)
T 1q4g_A 186 GPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQML-NGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLL 264 (553)
T ss_dssp CTTBBSCTTCSSSCHHHHCSSHHHHHHHBCSSTTCBCCEEE-TTEEECCBTTTSCCCCCCCTTCCGGGSBCCSSTTGGGC
T ss_pred chhhcccccccccccccCCCCHHHHHhhhcCCCCEecccCC-CCccCCCccCCCCCcccCCCCCCchhccccCccccCcC
Confidence 35789999999999999999999999999999 99998754 35556675432111 11 356999999999999
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHhhCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhhhccchhhhhhCCcCCCCCCCCCCC
Q psy11276 78 PGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYN 157 (189)
Q Consensus 78 ~~l~~lhtlf~ReHNria~~L~~~np~w~de~lfqeAR~iv~a~~Q~I~y~E~LP~llG~~~~~~~~l~~~~~g~~~gY~ 157 (189)
|+|++|||||+|||||||++|+++||+|+||+||||||+||+|+||||||+||||.|+|...+..++......++
T Consensus 265 p~L~~lhtlflReHNria~~L~~~nP~W~DE~LFQeAR~Iv~a~~Q~I~~~EyLp~ilg~~~~~~~dp~~~~~~~----- 339 (553)
T 1q4g_A 265 PGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFLQLKFDPELLFGAQ----- 339 (553)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCSSCCCCCGGGGTTSC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCcccccCCC-----
Confidence 999999999999999999999999999999999999999999999999999999999998655444332222221
Q ss_pred CCCCCchHHHHHHHHHHhhhccccCCccCC
Q psy11276 158 DNCKPNIMTEFATAAYRIGHSLLRPFIPRL 187 (189)
Q Consensus 158 ~~~~p~i~~EFa~AA~RfgHs~i~~~~~~~ 187 (189)
..++|+|++||++ ||| |||||++.+.+.
T Consensus 340 ~~~~~~is~EF~~-ayR-~Hslip~~~~~~ 367 (553)
T 1q4g_A 340 FQYRNRIAMEFNQ-LYH-WHPLMPDSFRVG 367 (553)
T ss_dssp CCCCCCCBHHHHH-HTC-CGGGSCSSEEET
T ss_pred cccCcchhHHHHH-Hhc-ccccCCcccccC
Confidence 1468899999976 599 799999987643
No 4
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=100.00 E-value=1.8e-52 Score=386.31 Aligned_cols=171 Identities=30% Similarity=0.413 Sum_probs=143.0
Q ss_pred cccccCCCcccCccCCCCCHhhhhhhhcCC-CCccccccCCCCCCCCCCCC-CCCCc------cccccccCCCCCCcchh
Q psy11276 8 EQINQNSAYLDGSLIYGEHACQAKDLRSYD-GKLNVTLMPGRKDLLPNTPT-HPECR------SRYCFVAGDGRASEQPG 79 (189)
Q Consensus 8 eq~N~~T~~lD~S~vYGs~~~~~~~LR~~~-G~L~~~~~~~~~~~lP~~~~-~~~c~------~~~cf~~GD~R~ne~~~ 79 (189)
...|++|||||||+||||+++++.+||+++ |+|+++.. ++..++|.... ...|. ...||++||.|+||+|+
T Consensus 188 ~~~n~~t~~lD~S~IYGss~~~~~~LR~~~~G~Lk~~~~-~g~~~pP~~~~~~~~~~~~~~~~~~~cf~~GD~R~ne~pg 266 (587)
T 3nt1_A 188 GFTRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVI-GGEVYPPTVKDTQVEMIYPPHIPENLQFAVGQEVFGLVPG 266 (587)
T ss_dssp TBBSCTTCSCCCHHHHCSSHHHHHHHBCSSTTCBCCEEE-TTEEECCBHHHHCCCCCCCTTSCGGGCBCCSSTTTTSCHH
T ss_pred ccccCccceeeeccCCCCCHHHHHhccCCCCCeeeeecC-CCccCCCCCCCcccccccCCCCCcccccccCCcccccChH
Confidence 357899999999999999999999999999 99998753 45666776422 11232 35799999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhhhccchhhhhhCCcCCCCCCCCCCCCC
Q psy11276 80 LTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDN 159 (189)
Q Consensus 80 l~~lhtlf~ReHNria~~L~~~np~w~de~lfqeAR~iv~a~~Q~I~y~E~LP~llG~~~~~~~~l~~~~~g~~~gY~~~ 159 (189)
|++|||||+|||||||++|+++||+|+||+||||||+||+|+||||||+||||+|+|.+.+..|++.....+ +. .
T Consensus 267 L~alhtlflREHNriA~~L~~~nP~W~DE~LFQeAR~Iv~A~~Q~Ity~EyLP~ilG~~~~~~~dp~~~~~~-~~----~ 341 (587)
T 3nt1_A 267 LMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQ-QF----Q 341 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-CTTCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCSSCCCCCGGGGTTS-CC----C
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhheeeeHHHHHHHhcCcchhcccCcccccCC-CC----C
Confidence 999999999999999999999999999999999999999999999999999999999987766665443222 22 3
Q ss_pred CCCchHHHHHHHHHHhhhccccCCccC
Q psy11276 160 CKPNIMTEFATAAYRIGHSLLRPFIPR 186 (189)
Q Consensus 160 ~~p~i~~EFa~AA~RfgHs~i~~~~~~ 186 (189)
++|+|++||++| | ||||||++.+.+
T Consensus 342 ~~~~is~eF~~a-~-~~Hslip~~~~~ 366 (587)
T 3nt1_A 342 YQNRIASEFNTL-Y-HWHPLLPDTFNI 366 (587)
T ss_dssp SCCCCBHHHHHH-T-CCGGGSCSSEEE
T ss_pred cCchHHHHHHHH-H-hccccCCccccc
Confidence 478899999865 5 689999998764
No 5
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=32.67 E-value=32 Score=20.04 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=14.8
Q ss_pred HHHHHHHhhCCCCCchHH
Q psy11276 93 RLAEQLVQINPHWNDEQL 110 (189)
Q Consensus 93 ria~~L~~~np~w~de~l 110 (189)
|+-+++...|-.|+||+|
T Consensus 11 ~~~~ei~~RNrpltDEeL 28 (39)
T 3lqv_P 11 RWEREIDERNRPLSDEEL 28 (39)
T ss_dssp HHHHHHHHTTCCCCHHHH
T ss_pred HhhccchhhcCCCCHHHH
Confidence 556678889999999986
No 6
>2hjd_A Quorum-sensing antiactivator; helix coiled coil, signaling protein; 2.10A {Agrobacterium tumefaciens}
Probab=25.38 E-value=32 Score=24.29 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHhhCCCCCchHHHHHHHH
Q psy11276 78 PGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARR 116 (189)
Q Consensus 78 ~~l~~lhtlf~ReHNria~~L~~~np~w~de~lfqeAR~ 116 (189)
--|-.|-+-=+|+|.|+.++ ||.+||+..+
T Consensus 27 sdlE~LtV~AIr~HRrLl~~---------ae~~fq~w~~ 56 (102)
T 2hjd_A 27 ADIETLTANAIRLHRQLLEK---------ADQLFQVLPD 56 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------HHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Confidence 34445555567999999885 6666665443
No 7
>1rfy_A TRAM protein;, transcriptional repressor TRAM; inter- and intra-molcular two-helix coiled coil, homodimer; 1.60A {Agrobacterium tumefaciens} SCOP: a.2.13.1 PDB: 1us6_A 1upg_A
Probab=25.19 E-value=32 Score=24.26 Aligned_cols=30 Identities=30% Similarity=0.489 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHhhCCCCCchHHHHHHHH
Q psy11276 78 PGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARR 116 (189)
Q Consensus 78 ~~l~~lhtlf~ReHNria~~L~~~np~w~de~lfqeAR~ 116 (189)
--|-.+-+-=+|+|.|+.++ ||.+||+..+
T Consensus 27 sdlE~LtV~AIr~HRrLl~~---------ae~~fq~w~~ 56 (102)
T 1rfy_A 27 TDLETITIDAIRTHRRLVEK---------ADELFQALPE 56 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------HHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Confidence 34445555567999999885 6666665433
No 8
>3sjr_A Uncharacterized protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; 2.94A {Chromobacterium violaceum}
Probab=23.35 E-value=71 Score=24.45 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhCCCCCch---------------HHHHHHHHHHHH
Q psy11276 80 LTAMHTILMREHNRLAEQLVQINPHWNDE---------------QLFQHARRIMVG 120 (189)
Q Consensus 80 l~~lhtlf~ReHNria~~L~~~np~w~de---------------~lfqeAR~iv~a 120 (189)
+.++-|.|+- .-+..||.|+.| +=|+|||.|...
T Consensus 97 IVsfaT~FF~-------~yq~qhPd~~~ee~L~~Fm~lIgGGiEqGF~EArdIL~G 145 (175)
T 3sjr_A 97 LLLGMEILME-------LYRQQHPDWTAPAIRQAFAPLARAGLERGYQEACQVLRQ 145 (175)
T ss_dssp HHHHHHHHHH-------HHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------HHHHhCCCCCHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 4455555553 346789999874 568888888754
No 9
>2mhr_A Myohemerythrin; oxygen binding; 1.30A {Themiste zostericola} SCOP: a.24.4.1 PDB: 1a7d_A 1a7e_A
Probab=18.75 E-value=1.6e+02 Score=20.29 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=26.5
Q ss_pred HhhhHHHHHHHHhhCCCCCchHHHHHHHHHHHHHhhhhhhhh
Q psy11276 88 MREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNE 129 (189)
Q Consensus 88 ~ReHNria~~L~~~np~w~de~lfqeAR~iv~a~~Q~I~y~E 129 (189)
.++|.++.+++....-...++. ..-+..|..+||...|
T Consensus 74 ~~~H~~f~~~v~~l~~~~~~~~----~~~l~~Wl~~HI~~~D 111 (118)
T 2mhr_A 74 KKMHKDFLEKIGGLSAPVDAKN----VDYCKEWLVNHIKGTD 111 (118)
T ss_dssp HHHHHHHHHHHHTCCSSCCHHH----HHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHHHHhch----hHHHHHHHHHHhHHHH
Confidence 5788888888888877666554 5555666666666554
No 10
>2ju0_B Phosphatidylinositol 4-kinase PIK1; EF-hand, calcium, ptdins 4-kinase, frequenin, yeast, lipoprotein, membrane, myristate, nucleus; NMR {Saccharomyces cerevisiae}
Probab=18.13 E-value=35 Score=21.17 Aligned_cols=19 Identities=37% Similarity=0.538 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhhhhhhhh
Q psy11276 110 LFQHARRIMVGQWQHIVYNE 129 (189)
Q Consensus 110 lfqeAR~iv~a~~Q~I~y~E 129 (189)
-||.+|++ +-..|+|+++-
T Consensus 4 ~Fqv~Rr~-~NklQ~ilFn~ 22 (52)
T 2ju0_B 4 GFQVARRV-LNNLQTNLFNT 22 (52)
T ss_dssp TTHHHHHH-HHHHTCCSSCS
T ss_pred hhHHHHHH-HHHHHHHHhCC
Confidence 48999996 45679998764
Done!