RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11276
(189 letters)
>gnl|CDD|188655 cd09823, peroxinectin_like, peroxinectin_like animal heme
peroxidases. Peroxinectin is an arthropod protein that
plays a role in invertebrate immunity mechanisms.
Specifically, peroxinectins are secreted as
cell-adhesive and opsonic peroxidases. The immunity
mechanism appears to involve an interaction between
peroxinectin and a transmembrane receptor of the
integrin family. Human myeloperoxidase, which is
included in this wider family, has also been reported to
interact with integrins.
Length = 378
Score = 279 bits (716), Expect = 1e-94
Identities = 91/189 (48%), Positives = 129/189 (68%), Gaps = 7/189 (3%)
Query: 7 REQINQNSAYLDGSLIYGEHACQAKDLRSYD-GKLNVTLMPGRKDLLPNTPTHPEC---- 61
REQ+NQ +++LDGS +YG +A+ LR++ G L GR +LLP + +
Sbjct: 1 REQLNQVTSFLDGSQVYGSSEEEARKLRTFKGGLLKTQRRNGR-ELLPFSNNPTDDCSLS 59
Query: 62 -RSRYCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVG 120
+ CF+AGDGR +EQPGLT+MHT+ +REHNR+A++L ++NPHW+DE+LFQ AR+I++
Sbjct: 60 SAGKPCFLAGDGRVNEQPGLTSMHTLFLREHNRIADELKKLNPHWDDERLFQEARKIVIA 119
Query: 121 QWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHSLL 180
Q QHI YNEFLP LLG + +GL L +GY+ GY+ N P+I+ EFA AA+R GHSL+
Sbjct: 120 QMQHITYNEFLPILLGRELMEKFGLYLLTSGYFNGYDPNVDPSILNEFAAAAFRFGHSLV 179
Query: 181 RPFIPRLGK 189
RL +
Sbjct: 180 PGTFERLDE 188
>gnl|CDD|217366 pfam03098, An_peroxidase, Animal haem peroxidase.
Length = 521
Score = 250 bits (640), Expect = 2e-81
Identities = 95/191 (49%), Positives = 122/191 (63%), Gaps = 9/191 (4%)
Query: 1 QQGFGPREQINQNSAYLDGSLIYGEHACQAKDLRSY-DGKLNVT---LMPGRKDLLPNTP 56
PREQINQ ++YLD S +YG +A LR++ DGKL V P K LLP P
Sbjct: 134 PSCNLPREQINQLTSYLDLSQVYGSSEEEADKLRTFKDGKLKVNGEFPPPNGKGLLPAPP 193
Query: 57 THPECRSRYCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARR 116
P CF+AGD R +E PGLTA+HT+ +REHNR+A++L +NPHW+DE+LFQ AR
Sbjct: 194 PGPSGCLS-CFLAGDSRVNENPGLTALHTLFLREHNRIADELKALNPHWSDEKLFQEARL 252
Query: 117 IMVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIG 176
I++ Q+Q I YNE+LP LLG + + L YY GY+ N P+I EFATAAYR G
Sbjct: 253 IVIAQYQKITYNEYLPALLGPDLMRANWL----LLYYTGYDPNVDPSISNEFATAAYRFG 308
Query: 177 HSLLRPFIPRL 187
HSL+ P + RL
Sbjct: 309 HSLIPPGLERL 319
>gnl|CDD|188654 cd09822, peroxinectin_like_bacterial, Uncharacterized family of
heme peroxidases, mostly bacterial. Animal heme
peroxidases are diverse family of enzymes which are not
restricted to animals. Members are also found in
metazoans, fungi, and plants, and also in bacteria -
like most members of this family of uncharacterized
proteins.
Length = 420
Score = 206 bits (527), Expect = 1e-65
Identities = 84/190 (44%), Positives = 113/190 (59%), Gaps = 17/190 (8%)
Query: 5 GPREQINQNSAYLDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGRKDLLPNTPTHPECRS 63
PREQIN +AY+DGS +YG +A LRS+ GKL ++ DLLP +
Sbjct: 46 NPREQINAITAYIDGSNVYGSDEERADALRSFGGGKLKTSVANA-GDLLPFNEAGLPNDN 104
Query: 64 RYC-----FVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIM 118
F+AGD RA+E PGLTA+HT+ +REHNRLA++L + NP +DE+++Q AR I+
Sbjct: 105 GGVPADDLFLAGDVRANENPGLTALHTLFVREHNRLADELARRNPSLSDEEIYQAARAIV 164
Query: 119 VGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHS 178
+ + Q I YNEFLP LLG NA+ Y GY++ P I EF+TAAYR GHS
Sbjct: 165 IAEIQAITYNEFLPALLGENAL----------PAYSGYDETVNPGISNEFSTAAYRFGHS 214
Query: 179 LLRPFIPRLG 188
+L + R
Sbjct: 215 MLSSELLRGD 224
>gnl|CDD|188658 cd09826, peroxidasin_like, Animal heme peroxidase domain of
peroxidasin and related proteins. Peroxidasin is a
secreted heme peroxidase which is involved in hydrogen
peroxide metabolism and peroxidative reactions in the
cardiovascular system. The domain co-occurs with
extracellular matrix domains and may play a role in the
formation of the extracellular matrix.
Length = 440
Score = 192 bits (491), Expect = 4e-60
Identities = 84/199 (42%), Positives = 121/199 (60%), Gaps = 18/199 (9%)
Query: 2 QGFGPREQINQNSAYLDGSLIYGEHACQAKDLR---SYDGKLNV-TLMPGRKDLLP-NTP 56
PREQINQ ++Y+D S +YG +A +LR S G L V + K LLP
Sbjct: 32 NSVTPREQINQLTSYIDASNVYGSSDEEALELRDLASDRGLLRVGIVSEAGKPLLPFERD 91
Query: 57 THPECRSRY------CFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQL 110
+ +CR CF+AGD RA+EQ GLT+MHT+ +REHNR+A +L+++NPHW+ E +
Sbjct: 92 SPMDCRRDPNESPIPCFLAGDHRANEQLGLTSMHTLWLREHNRIASELLELNPHWDGETI 151
Query: 111 FQHARRIMVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFAT 170
+ R+I+ Q QHI Y+ +LP++LG + + G Y+GYN N P+I EFAT
Sbjct: 152 YHETRKIVGAQMQHITYSHWLPKILGPVGMEM-------LGEYRGYNPNVNPSIANEFAT 204
Query: 171 AAYRIGHSLLRPFIPRLGK 189
AA+R GH+L+ P + RL +
Sbjct: 205 AAFRFGHTLINPILFRLDE 223
>gnl|CDD|188647 cd05396, An_peroxidase_like, Animal heme peroxidases and related
proteins. A diverse family of enzymes, which includes
prostaglandin G/H synthase, thyroid peroxidase,
myeloperoxidase, linoleate diol synthase,
lactoperoxidase, peroxinectin, peroxidasin, and others.
Despite its name, this family is not restricted to
metazoans: members are found in fungi, plants, and
bacteria as well.
Length = 370
Score = 186 bits (475), Expect = 2e-58
Identities = 72/187 (38%), Positives = 105/187 (56%), Gaps = 15/187 (8%)
Query: 9 QINQNSAYLDGSLIYGEHACQAKDLRSY-DGKLN---VTLMPGRKDLLPNTPTHPECRSR 64
Q+N + YLDGS IYG + A+ LR++ G L V +LLP +P +
Sbjct: 1 QLNARTPYLDGSSIYGSNPDVARALRTFKGGLLKTNEVKGPSYGTELLPFNNPNPSMGTI 60
Query: 65 -----YCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMV 119
CF+AGD R +E L A+HT+ +REHNRLA++L + +P W+DE+L+Q AR I++
Sbjct: 61 GLPPTRCFIAGDPRVNENLLLLAVHTLFLREHNRLADRLKKEHPEWDDERLYQEARLIVI 120
Query: 120 GQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHSL 179
Q+Q I YNE+LP +LG L + + P +++EF TAAYR GHSL
Sbjct: 121 AQYQLITYNEYLPAILGKFTDPRDDL------VLLFPDPDVVPYVLSEFFTAAYRFGHSL 174
Query: 180 LRPFIPR 186
+ + R
Sbjct: 175 VPEGVDR 181
>gnl|CDD|188657 cd09825, thyroid_peroxidase, Thyroid peroxidase (TPO). TPO is a
member of the animal heme peroxidase family, which is
expressed in the thyroid and involved in the processing
of iodine and iodine compounds. Specifically, TPO
oxidizes iodide via hydrogen peroxide to form active
iodine, which is then, for example, incorporated into
the tyrosine residues of thyroglobulin to yield mono-
and di-iodotyrosines.
Length = 565
Score = 168 bits (428), Expect = 9e-50
Identities = 80/195 (41%), Positives = 111/195 (56%), Gaps = 19/195 (9%)
Query: 6 PREQINQNSAYLDGSLIYGEH---ACQAKDLRSYDGKLNVTLM--PGRKDLLPNTPTHPE 60
PREQIN ++++D S +YG A +DL S DG L V +D LP P
Sbjct: 147 PREQINGLTSFIDASTVYGSTLALARSLRDLSSDDGLLRVNSKFDDSGRDYLPFQPEEVS 206
Query: 61 CRSRY--------CFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQ 112
+ CF+AGDGRASE LTA HT+ +REHNRLA L INPHW+ EQ++Q
Sbjct: 207 SCNPDPNGGERVPCFLAGDGRASEVLTLTASHTLWLREHNRLARALKSINPHWDGEQIYQ 266
Query: 113 HARRIMVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAA 172
AR+I+ Q I + +++P++LG A + YG GYY+GY+ P + F+TAA
Sbjct: 267 EARKIVGALHQIITFRDYIPKILGPEAFDQYG------GYYEGYDPTVNPTVSNVFSTAA 320
Query: 173 YRIGHSLLRPFIPRL 187
+R GH+ + P + RL
Sbjct: 321 FRFGHATIHPTVRRL 335
>gnl|CDD|188656 cd09824, myeloperoxidase_like, Myeloperoxidases, eosinophil
peroxidases, and lactoperoxidases. This well conserved
family of animal heme peroxidases contains members with
somewhat diverse functions. Myeloperoxidases are
lysosomal proteins found in azurophilic granules of
neutrophils and the lysosomes of monocytes. They are
involved in the formation of microbicidal agents upon
activation of activated neutrophils (neutrophils
undergoing respiratory bursts as a result of
phagocytosis), by catalyzing the conversion of hydrogen
peroxide to hypochlorous acid. As a heme protein,
myeloperoxidase is responsible for the greenish tint of
pus, which is rich in neutrophils. Eosinophil
peroxidases are haloperoxidases as well, preferring
bromide over chloride. Expressed by eosinophil
granulocytes, they are involved in attacking
multicellular parasites and play roles in various
inflammatory diseases such as asthma. The haloperoxidase
lactoperoxidase is secreted from mucosal glands and
provides antibacterial activity by oxidizing a variety
of substrates such as bromide or chloride in the
presence of hydrogen peroxide.
Length = 411
Score = 154 bits (392), Expect = 9e-46
Identities = 80/194 (41%), Positives = 114/194 (58%), Gaps = 20/194 (10%)
Query: 7 REQINQNSAYLDGSLIYGEHACQAKDLRSYDGKLN-VTLMPGRKD----LLPNTPTHPE- 60
REQIN ++++D S++YG AK LR+ +L + + D LLP H +
Sbjct: 12 REQINALTSFVDASMVYGSEPSLAKXLRNLTNQLGLLAVNQRFTDNGLALLPFENLHNDP 71
Query: 61 CRSRY------CFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHA 114
C R CF+AGD R SE PGL A+HT+L+REHNRLA +L ++NPHW+ E L+Q A
Sbjct: 72 CALRNTSANIPCFLAGDTRVSENPGLAALHTLLLREHNRLARELHRLNPHWDGETLYQEA 131
Query: 115 RRIMVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYR 174
R+I+ Q I Y ++LP +LG +A +L P Y+GYN++ P I F TA R
Sbjct: 132 RKIVGAMVQIITYRDYLPLILGEDAAA----RLPP---YRGYNESVDPRIANVFTTAFRR 184
Query: 175 IGHSLLRPFIPRLG 188
GH+ ++PF+ RL
Sbjct: 185 -GHTTVQPFVFRLD 197
>gnl|CDD|188652 cd09820, dual_peroxidase_like, Dual oxidase and related animal heme
peroxidases. Animal heme peroxidases of the
dual-oxidase like subfamily play vital roles in the
innate mucosal immunity of gut epithelia. They provide
reactive oxygen species which help control infection.
Length = 558
Score = 129 bits (326), Expect = 3e-35
Identities = 64/187 (34%), Positives = 96/187 (51%), Gaps = 21/187 (11%)
Query: 6 PREQINQNSAYLDGSLIYGEHACQAKDLRSY-DGKL--NVTLMPGRKD----LLPNTP-- 56
PREQ+N+ ++++DGS IYG + LRS+ G+L R++ L N P
Sbjct: 130 PREQLNEVTSWIDGSSIYGSSKAWSDALRSFSGGRLASGDDGGFPRRNTNRLPLANPPPP 189
Query: 57 -THPECRSRYCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHAR 115
H F G+ R +E P L + R HN LA+++ + +P W+DE +FQ AR
Sbjct: 190 SYHGTRGPERLFKLGNPRGNENPFLLTFGILWFRYHNYLAQRIAREHPDWSDEDIFQEAR 249
Query: 116 RIMVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRI 175
+ ++ +Q+IV+ E+LP LLG N Y GY + P I EF AA+R
Sbjct: 250 KWVIATYQNIVFYEWLPALLGTNVPP-----------YTGYKPHVDPGISHEFQAAAFRF 298
Query: 176 GHSLLRP 182
GH+L+ P
Sbjct: 299 GHTLVPP 305
>gnl|CDD|188653 cd09821, An_peroxidase_bacterial_2, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 570
Score = 117 bits (296), Expect = 4e-31
Identities = 71/238 (29%), Positives = 94/238 (39%), Gaps = 64/238 (26%)
Query: 5 GPREQINQNSAYLDGSLIYGEHACQAKDLRSYDGKLNVT--------------------- 43
G E N + ++D + YG HA LR YDG T
Sbjct: 79 GEGEHTNVTTPFVDQNQTYGSHASHQVFLREYDGDGVATGRLLEGATGGSARTGHAFLDD 138
Query: 44 -------------LMPGRKDLLPNTPTH----PECRSRYCFVAGDGRASEQPGLTAMHTI 86
L + P E + FVAGDGR +E GLTA+HT+
Sbjct: 139 IAHNAAPKGGLGSLRDNPTEDPPGPGAPGSYDNELLDAH-FVAGDGRVNENIGLTAVHTV 197
Query: 87 LMREHNRLAEQLVQI----------------NPHWNDEQLFQHARRIMVGQWQHIVYNEF 130
REHNRL +Q+ N W+ E+LFQ AR Q+QH+V+ EF
Sbjct: 198 FHREHNRLVDQIKDTLLQSADLAFANEAGGNNLAWDGERLFQAARFANEMQYQHLVFEEF 257
Query: 131 LPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHSLLRPFIPRLG 188
R+ + G + GYN P+I EFA A YR GHS+L + R+G
Sbjct: 258 ARRIQPG---------IDGFGSFNGYNPEINPSISAEFAHAVYRFGHSMLTETVTRIG 306
>gnl|CDD|188648 cd09816, prostaglandin_endoperoxide_synthase, Animal prostaglandin
endoperoxide synthase and related bacterial proteins.
Animal prostaglandin endoperoxide synthases, including
prostaglandin H2 synthase and a set of similar bacterial
proteins which may function as cyclooxygenases.
Prostaglandin H2 synthase catalyzes the synthesis of
prostaglandin H2 from arachidonic acid. In two reaction
steps, arachidonic acid is converted to Prostaglandin
G2, a peroxide (cyclooxygenase activity) and
subsequently converted to the end product via the
enzyme's peroxidase activity. Prostaglandin H2 synthase
is the target of aspirin and other non-steroid
anti-inflammatory drugs such as ibuprofen, which block
the substrate's access to the active site and may
acetylate a conserved serine residue. In humans and
other mammals, prostaglandin H2 synthase (PGHS), also
called cyclooxygenase (COX) is present as at least two
isozymes, PGHS-1 (or COX-1) and PGHS-2 (or COX-2),
respectively. PGHS-1 is expressed constitutively in most
mammalian cells, while the expression of PGHS-2 is
induced via inflammation response in endothelial cells,
activated macrophages, and others. COX-3 is a splice
variant of COX-1.
Length = 490
Score = 78.5 bits (194), Expect = 3e-17
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 18/131 (13%)
Query: 18 DGSLIYGEHACQAKDLRSY-DGKLNVTLMPG-----------------RKDLLPNTPTHP 59
D S IYG + LR + DGKL ++ G + P
Sbjct: 132 DLSQIYGLTEARTHALRLFKDGKLKSQMINGEEYPPYLFEDGGVKMEFPPLVPPLGDELT 191
Query: 60 ECRSRYCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMV 119
R F G R + PGL ++TI +REHNR+ + L + +P W+DE+LFQ AR I++
Sbjct: 192 PEREAKLFAVGHERFNLTPGLFMLNTIWLREHNRVCDILKKEHPDWDDERLFQTARNILI 251
Query: 120 GQWQHIVYNEF 130
G+ IV ++
Sbjct: 252 GELIKIVIEDY 262
>gnl|CDD|188650 cd09818, PIOX_like, Animal heme oxidases similar to plant
pathogen-inducible oxygenases. This is a diverse family
of oxygenases related to the animal heme peroxidases,
with members from plants, animals, and bacteria. The
plant pathogen-inducible oxygenases (PIOX) oxygenate
fatty acids into 2R-hydroperoxides. They may be involved
in the hypersensitive reaction, rapid and localized cell
death induced by infection with pathogens, and the
rapidly induced expression of PIOX may be caused by the
oxidative burst that occurs in the process of cell
death.
Length = 484
Score = 74.6 bits (184), Expect = 5e-16
Identities = 47/152 (30%), Positives = 66/152 (43%), Gaps = 25/152 (16%)
Query: 5 GPREQINQNSAYLDGSLIYGEHACQAKDLRSY--DGKLNVTLMPGRKDLLPNTP---THP 59
GP IN N+ + DGS IYG K LR++ DGKL + LLP
Sbjct: 82 GPPTYINTNTHWWDGSQIYGSTEEAQKRLRTFPPDGKLKLD----ADGLLPVDEHTGLPL 137
Query: 60 ECRSRYCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMV 119
+ +V GL+ +HT+ +REHN + + L + P W+DEQLF AR +
Sbjct: 138 TGFNDNWWV----------GLSLLHTLFVREHNAICDALRKEYPDWSDEQLFDKARLVNA 187
Query: 120 GQWQHIVYNEFLPRLLGLNA------VNLYGL 145
I E+ P +L N +GL
Sbjct: 188 ALMAKIHTVEWTPAILAHPTLEIAMRANWWGL 219
>gnl|CDD|188651 cd09819, An_peroxidase_bacterial_1, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 465
Score = 72.4 bits (178), Expect = 3e-15
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 68 VAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVY 127
+ GD R E + +H +R HN + + L ++ LF+ ARR++ +Q +V
Sbjct: 145 LIGDPRNDENLIVAQLHLAFLRFHNAVVDALRAHGTPGDE--LFEEARRLVRWHYQWLVL 202
Query: 128 NEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHSLLRPF 183
N+FLPR+ + V+ + +Y+ + + KP + EF+ AAYR GHS++R
Sbjct: 203 NDFLPRICDPDVVDDV--LANGRRFYRFFREG-KPFMPVEFSVAAYRFGHSMVRAS 255
>gnl|CDD|177921 PLN02283, PLN02283, alpha-dioxygenase.
Length = 633
Score = 57.1 bits (138), Expect = 7e-10
Identities = 53/196 (27%), Positives = 93/196 (47%), Gaps = 41/196 (20%)
Query: 10 INQNSAYLDGSLIYGEHACQAKDLRSY-DGKLNVT---LMPGRKDLLPNTPTHPECRSRY 65
+N + + DGS+IYG + + +R++ DGKL ++ L+ +D +P
Sbjct: 207 LNIRTPWWDGSVIYGSNEKGLRRVRTFKDGKLKISEDGLLLHDEDGIP------------ 254
Query: 66 CFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHI 125
++GD R S G++ + + ++EHN + + L + P ++DE+L++HAR + I
Sbjct: 255 --ISGDVRNS-WAGVSLLQALFVKEHNAVCDALKEEYPDFDDEELYRHARLVTSAVIAKI 311
Query: 126 VYNEFLPRLLGLNA------VNLYGL---KLSPT-GYYKGY-----------NDNCKPNI 164
++ LL + N YGL K T G+ G N++ P
Sbjct: 312 HTIDWTVELLKTDTLLAGMRANWYGLLGKKFKDTFGHIGGPILSGLVGLKKPNNHGVPYS 371
Query: 165 MTEFATAAYRIGHSLL 180
+TE T+ YR+ HSLL
Sbjct: 372 LTEEFTSVYRM-HSLL 386
>gnl|CDD|188649 cd09817, linoleate_diol_synthase_like, Linoleate (8R)-dioxygenase
and related enzymes. These fungal enzymes, related to
animal heme peroxidases, catalyze the oxygenation of
linoleate and similar targets. Linoleate
(8R)-dioxygenase, also called linoleate:oxygen
7S,8S-oxidoreductase, generates
(9Z,12Z)-(7S,8S)-dihydroxyoctadeca-9,12-dienoate as a
product. Other members are 5,8-linoleate dioxygenase
(LDS, ppoA) and linoleate 10R-dioxygenase (ppoC),
involved in the biosynthesis of oxylipins.
Length = 550
Score = 47.7 bits (114), Expect = 1e-06
Identities = 46/151 (30%), Positives = 61/151 (40%), Gaps = 43/151 (28%)
Query: 10 INQNSAYLDGSLIYGE-HACQAKDLRSYDGKLNVTLMPGRKDLLPNTPTHPECRSRYCFV 68
IN S+YLD S +YG Q K DGKL P+ S
Sbjct: 117 INNTSSYLDLSPLYGSNQEEQNKVRTMKDGKL-----------------KPDTFS----- 154
Query: 69 AGDGRASEQ-PGLTAMHTILMREHNRLAEQLVQIN-----------------PHWNDEQL 110
D R Q PG+ A+ + R HN + EQL QIN DE L
Sbjct: 155 --DKRLLGQPPGVCALLVMFNRFHNYVVEQLAQINEGGRFTPPGDKLDSSAKEEKLDEDL 212
Query: 111 FQHARRIMVGQWQHIVYNEFLPRLLGLNAVN 141
FQ AR I G + +IV ++++ +L LN +
Sbjct: 213 FQTARLITCGLYINIVLHDYVRAILNLNRTD 243
>gnl|CDD|149587 pfam08586, Rsc14, RSC complex, Rsc14/Ldb7 subunit. RSC is an
ATP-dependent chromatin remodelling complex found in
yeast. The RSC components Rsc7/Npl6 and Rsc14/Ldb7
interact physically and/or functionally with Rsc3,
Rsc30, and Htl1 to form a module important for a broad
range of RSC functions.
Length = 101
Score = 28.2 bits (63), Expect = 0.95
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 165 MTEFATAAYRIGHSLLRPFIPR 186
+ + AAY + H+LL ++PR
Sbjct: 68 LKDAEEAAYDLDHTLLGGYVPR 89
>gnl|CDD|179337 PRK01810, PRK01810, DNA polymerase IV; Validated.
Length = 407
Score = 28.8 bits (65), Expect = 1.9
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 102 NPHWNDEQLFQHARRIMVGQWQHIVYNEFLPRLLGLNAVNL 142
NP W +FQ A R+ W N RLLG+ A +L
Sbjct: 309 NPIWEKRDIFQAASRLFKQHW-----NGDPVRLLGVTATDL 344
>gnl|CDD|205497 pfam13317, DUF4088, Protein of unknown function (DUF4088). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 258 and 300 amino
acids in length.
Length = 229
Score = 27.9 bits (62), Expect = 2.5
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 86 ILMREHNRLAEQLVQINPHWNDEQLFQHAR 115
LMR+ R L + W EQ +HAR
Sbjct: 71 ALMRDAQRFGFGLA-VQSDWTPEQRAEHAR 99
>gnl|CDD|217741 pfam03806, ABG_transport, AbgT putative transporter family.
Length = 502
Score = 28.1 bits (63), Expect = 3.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 167 EFATAAYRIGHSLLRPFIP 185
EF AAYRIG S+ P
Sbjct: 423 EFTQAAYRIGDSITNIITP 441
>gnl|CDD|178511 PLN02923, PLN02923, xylose isomerase.
Length = 478
Score = 27.1 bits (60), Expect = 7.0
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 13/59 (22%)
Query: 64 RYCF----VAGDGRASEQPGLTAMHTILMREHNRLAEQLVQ---INPHWNDEQLFQHAR 115
R+CF +A DG+ E+ + E LA++L + I P W QLF+H R
Sbjct: 139 RWCFHDRDIAPDGKTLEESNAN------LDEVVALAKELQEGTKIRPLWGTAQLFKHPR 191
>gnl|CDD|163630 cd07387, MPP_PolD2_C, PolD2 (DNA polymerase delta, subunit 2),
C-terminal domain. PolD2 (DNA polymerase delta, subunit
2) is an auxiliary subunit of the eukaryotic DNA
polymerase delta (PolD) complex thought to play a
regulatory role and to serve as a scaffold for PolD
assembly by interacting simultaneously with all of the
other three subunits. PolD2 is catalytically inactive
and lacks the active site residues required for
phosphoesterase activity in other members of this
superfamily. PolD2 is also involved in the recruitment
of several proteins regulating DNA metabolism, including
p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists
of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3),
and p12(PolD4). PolD is one of three major replicases
in eukaryotes. PolD also plays an essential role in
translesion DNA synthesis, homologous recombination, and
DNA repair. Within the PolD complex, PolD2 tightly
associates with PolD3. PolD2 belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but share a conserved domain with
an active site consisting of two metal ions (usually
manganese, iron, or zinc) coordinated with octahedral
geometry by a cage of histidine, aspartate, and
asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 257
Score = 26.4 bits (59), Expect = 8.2
Identities = 10/24 (41%), Positives = 11/24 (45%), Gaps = 4/24 (16%)
Query: 40 LNVTLMPGRKD----LLPNTPTHP 59
+ V LMPG D LP P H
Sbjct: 95 VPVDLMPGEFDPANHSLPQQPLHR 118
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.437
Gapped
Lambda K H
0.267 0.0598 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,774,051
Number of extensions: 882899
Number of successful extensions: 702
Number of sequences better than 10.0: 1
Number of HSP's gapped: 677
Number of HSP's successfully gapped: 24
Length of query: 189
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 98
Effective length of database: 6,901,388
Effective search space: 676336024
Effective search space used: 676336024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.6 bits)