RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11276
(189 letters)
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C*
1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Length = 466
Score = 179 bits (455), Expect = 6e-55
Identities = 75/199 (37%), Positives = 109/199 (54%), Gaps = 19/199 (9%)
Query: 1 QQGFGPREQINQNSAYLDGSLIYGEHACQAKDLRSYDG-----KLNVTLMPGRKDLLPNT 55
R QIN ++++D S++YG A++LR+ +N + LLP
Sbjct: 43 GSNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFD 102
Query: 56 PTHP-ECRSR------YCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDE 108
H C CF+AGD R+SE P LT+MHT+L+REHNRLA +L +NP W+ E
Sbjct: 103 NLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGE 162
Query: 109 QLFQHARRIMVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEF 168
+L+Q AR+I+ Q I Y ++LP +LG A+ Y Y+ YND+ P I F
Sbjct: 163 RLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKYL------PTYRSYNDSVDPRIANVF 216
Query: 169 ATAAYRIGHSLLRPFIPRL 187
T A+R GH+L++PF+ RL
Sbjct: 217 -TNAFRYGHTLIQPFMFRL 234
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 177 bits (450), Expect = 3e-53
Identities = 48/191 (25%), Positives = 68/191 (35%), Gaps = 14/191 (7%)
Query: 6 PREQINQNSAYLDGSLIYGEHACQAKDLRSY-DGKLNVT------LMPGRKDLLPNTPTH 58
+D + IYGE + LR + DGKL P KD
Sbjct: 186 GPGFTRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYP 245
Query: 59 PECRSRYCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIM 118
P F G PGL TI +REHNR+ + L Q +P W DEQLFQ +R I+
Sbjct: 246 PHIPENLQFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLIL 305
Query: 119 VGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHS 178
+G+ IV +++ L G + + +N + H
Sbjct: 306 IGETIKIVIEDYVQHLSGYHFKLKFDP-------ELLFNQQFQYQNRIASEFNTLYHWHP 358
Query: 179 LLRPFIPRLGK 189
LL +
Sbjct: 359 LLPDTFNIEDQ 369
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase,
phenyl isothiocyanat iodide, PEG, edman reagent; HET:
SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A*
2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A*
3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A*
3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Length = 595
Score = 170 bits (432), Expect = 1e-50
Identities = 72/201 (35%), Positives = 99/201 (49%), Gaps = 20/201 (9%)
Query: 1 QQGFGPREQINQNSAYLDGSLIYGEHACQAKDLRSYDG-----KLNVTLMPGRKDLLPNT 55
REQIN +++LD SL+YG A LR+ +N LP
Sbjct: 171 PYQSLAREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFN 230
Query: 56 PTHP-ECRSR------YCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDE 108
P C CF+AGD RASEQ L HT+L+REHNRLA +L ++NPHWN E
Sbjct: 231 NKKPSPCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGE 290
Query: 109 QLFQHARRIMVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEF 168
+L+Q AR+I+ Q I + ++LP +LG Y+GYN++ P I F
Sbjct: 291 KLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWI-------PPYQGYNNSVDPRISNVF 343
Query: 169 ATAAYRIGHSLLRPFIPRLGK 189
T A+R GH + + RL +
Sbjct: 344 -TFAFRFGHMEVPSTVSRLDE 363
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 169 bits (429), Expect = 3e-50
Identities = 49/187 (26%), Positives = 71/187 (37%), Gaps = 16/187 (8%)
Query: 6 PREQINQNSAYLDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGRKDLLPNTPTHPECRSR 64
+D IYG++ + LR + DGKL ++ G P+ P
Sbjct: 186 GPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGE-VYPPSVEEAPVLMHY 244
Query: 65 -------YCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRI 117
G PGL TI +REHNR+ + L +P W DEQLFQ AR I
Sbjct: 245 PRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLI 304
Query: 118 MVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGH 177
++G+ IV E++ +L G + +L G + I EF H
Sbjct: 305 LIGETIKIVIEEYVQQLSGYFLQLKFDPEL-----LFGAQFQYRNRIAMEFNQ--LYHWH 357
Query: 178 SLLRPFI 184
L+
Sbjct: 358 PLMPDSF 364
>3naf_A Calcium-activated potassium channel subunit alpha; ION channel,
gating ring, rossman fold, transport, ION trans; 3.10A
{Homo sapiens}
Length = 798
Score = 33.1 bits (74), Expect = 0.045
Identities = 8/85 (9%), Positives = 23/85 (27%), Gaps = 5/85 (5%)
Query: 61 CRSRYCFVAGDGRASEQPGLTAMHTIL----MREHNRLAEQLVQINPHWNDEQLFQHARR 116
+ C + + + P I+ ++ ++ + Q+ + N L
Sbjct: 128 ESADACLILAN-KYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAHLLNIPSW 186
Query: 117 IMVGQWQHIVYNEFLPRLLGLNAVN 141
I E + + +
Sbjct: 187 NWKEGDDAICLAELKLGFIAQSCLA 211
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.22
Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 46/145 (31%)
Query: 1 QQGFGPREQINQNSAYLDGSLIYGEHA---------CQAKDLRSYDGKLNVTLMPGRKDL 51
+ + P + + L+ SL E + ++ Y K N L P K +
Sbjct: 311 YEAY-PNTSLP--PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL-PAGKQV 366
Query: 52 ---LPNTPTHPECRSRYCFV-AGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWND 107
L N + V +G ++ L ++ L + P D
Sbjct: 367 EISLVNGAKN--------LVVSGPPQS-----LYGLNLTLRKAKA----------PSGLD 403
Query: 108 EQLFQHARRIMVGQWQHIVYNEFLP 132
Q RI + + N FLP
Sbjct: 404 ----QS--RIPFSERKLKFSNRFLP 422
Score = 28.1 bits (62), Expect = 2.5
Identities = 21/133 (15%), Positives = 34/133 (25%), Gaps = 55/133 (41%)
Query: 22 IYGEHACQAKDLRSYDGKLN------VTLMPGR-KDLLPNTPTHPECRSRYCFVA-GDGR 73
+Y DLR G ++ + +P + + TH + G G
Sbjct: 459 VY--DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH--------ILDFGPGG 508
Query: 74 ASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNEFLPR 133
AS LT R G ++ +
Sbjct: 509 ASGLGVLTH---------------------------------RNKDGTGVRVI----VAG 531
Query: 134 LLGLNAVNLYGLK 146
L +N + YG K
Sbjct: 532 TLDINPDDDYGFK 544
Score = 26.2 bits (57), Expect = 8.2
Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 9/93 (9%)
Query: 3 GFGPREQINQNSAYLDGSLIYGEHACQAKDLRS-YDGKLNVTLMPGRKDLLPNTPTHPEC 61
GF + + N +L + K +R Y + T++ G+ E
Sbjct: 1658 GFSILDIVINNP----VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEH 1713
Query: 62 RSRYCFVAGDGRASE----QPGLTAMHTILMRE 90
+ Y F + G S QP LT M +
Sbjct: 1714 STSYTFRSEKGLLSATQFTQPALTLMEKAAFED 1746
>3mt5_A Potassium large conductance calcium-activated CHA subfamily M,
alpha member 1; potassium channel, membrane protein,
transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A
Length = 726
Score = 29.3 bits (64), Expect = 0.95
Identities = 8/85 (9%), Positives = 23/85 (27%), Gaps = 5/85 (5%)
Query: 61 CRSRYCFVAGDGRASEQPGLTAMHTIL----MREHNRLAEQLVQINPHWNDEQLFQHARR 116
+ C + + + P I+ ++ ++ + Q+ + N L
Sbjct: 78 ESADACLILAN-KYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAHLLNIPSW 136
Query: 117 IMVGQWQHIVYNEFLPRLLGLNAVN 141
I E + + +
Sbjct: 137 NWKEGDDAICLAELKLGFIAQSCLA 161
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 27.9 bits (62), Expect = 2.4
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 8/79 (10%)
Query: 33 LRSYDGKLNVTLMPGRKDLLPNTPTHPE--------CRSRYCFVAGDGRASEQPGLTAMH 84
L + D L +T HPE + E+ G +
Sbjct: 768 LYISWNEKRQKYEDLEHDQLDSTRIHPEDYHLATKVAADALEYDPDTIAEKEEQGTMSEF 827
Query: 85 TILMREHNRLAEQLVQINP 103
L+RE +L +N
Sbjct: 828 IELLREDPDRRAKLESLNL 846
>1tz0_A Hypothetical protein; structural genomics, protein structure
initiative, MCSG, HYP protein, PSI; 1.84A {Bacillus
cereus atcc 14579} SCOP: d.58.4.5
Length = 114
Score = 26.8 bits (59), Expect = 2.9
Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 69 AGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQ 112
G+G + G + ++ + R ++ V + W E+ ++
Sbjct: 29 TGEGIIEKFEGFIDLS--VLVKKVRRGDEEVVVMIRWESEEAWK 70
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 26.8 bits (59), Expect = 5.3
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 8/79 (10%)
Query: 33 LRSYDGKLNVTLMPGRKDLLPNTPTHPE--------CRSRYCFVAGDGRASEQPGLTAMH 84
L + D L +T HPE + E+ G +
Sbjct: 765 LYISWNEKRQKYEDLEHDQLDSTRIHPEDYHLATKVAADALEYDPDTIAEKEEQGTMSEF 824
Query: 85 TILMREHNRLAEQLVQINP 103
L+RE +L +N
Sbjct: 825 IELLREDPDRRAKLESLNL 843
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex,
transferase; HET: MSE TPP; 2.00A {Streptomyces
clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB:
1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Length = 573
Score = 26.0 bits (58), Expect = 8.6
Identities = 2/12 (16%), Positives = 8/12 (66%)
Query: 118 MVGQWQHIVYNE 129
++ +Q+I ++
Sbjct: 495 LIELYQNIGHHR 506
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.437
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,990,046
Number of extensions: 166475
Number of successful extensions: 321
Number of sequences better than 10.0: 1
Number of HSP's gapped: 311
Number of HSP's successfully gapped: 18
Length of query: 189
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,244,745
Effective search space: 428719245
Effective search space used: 428719245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.3 bits)