RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11276
         (189 letters)



>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 511

 Score =  188 bits (478), Expect = 3e-58
 Identities = 45/195 (23%), Positives = 68/195 (34%), Gaps = 16/195 (8%)

Query: 3   GFGPREQINQNSAYLDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGRKDLLPNTPT---- 57
                         +D + IYGE   +   LR + DGKL    + G +   P        
Sbjct: 142 HKRGPGFTRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQ-VIGGEVYPPTVKDTQVE 200

Query: 58  ---HPECRSRYCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHA 114
               P       F  G       PGL    TI +REH R+ + L Q +P W DEQLFQ +
Sbjct: 201 MIYPPHIPENLQFAVGQEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTS 260

Query: 115 RRIMVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYR 174
           + I++G+   IV  +++  L G +    +            +N   +             
Sbjct: 261 KLILIGETIKIVIEDYVQHLSGYHFKLKFDP-------ELLFNQQFQYQNRIASEFNTLY 313

Query: 175 IGHSLLRPFIPRLGK 189
             H LL        +
Sbjct: 314 HWHPLLPDTFNIEDQ 328


>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 570

 Score =  185 bits (470), Expect = 1e-56
 Identities = 74/199 (37%), Positives = 108/199 (54%), Gaps = 19/199 (9%)

Query: 1   QQGFGPREQINQNSAYLDGSLIYGEHACQAKDLRSYDG-----KLNVTLMPGRKDLLPNT 55
                 R QIN  ++++D S++YG     A++LR+         +N       + LLP  
Sbjct: 147 GSNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFD 206

Query: 56  PTHP-------ECRSRYCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDE 108
             H              CF+AGD R+SE P LT+MHT+L+REHNRLA +L  +NP W+ E
Sbjct: 207 NLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGE 266

Query: 109 QLFQHARRIMVGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEF 168
           +L+Q AR+I+    Q I Y ++LP +LG  A+  Y         Y+ YND+  P I   F
Sbjct: 267 RLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKYL------PTYRSYNDSVDPRIANVF 320

Query: 169 ATAAYRIGHSLLRPFIPRL 187
            T A+R GH+L++PF+ RL
Sbjct: 321 -TNAFRYGHTLIQPFMFRL 338


>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis
           aries) [TaxId: 9940]}
          Length = 511

 Score =  176 bits (448), Expect = 7e-54
 Identities = 44/191 (23%), Positives = 68/191 (35%), Gaps = 14/191 (7%)

Query: 6   PREQINQNSAYLDGSLIYGEHACQAKDLRSY-DGKLNVTLMPGRKDLLPNTPTHPECR-- 62
                      +D   IYG++  +   LR + DGKL   ++ G                 
Sbjct: 144 GPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYP 203

Query: 63  ----SRYCFVAGDGRASEQPGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIM 118
                +     G       PGL    TI +REHNR+ + L   +P W DEQLFQ AR I+
Sbjct: 204 RGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLIL 263

Query: 119 VGQWQHIVYNEFLPRLLGLNAVNLYGLKLSPTGYYKGYNDNCKPNIMTEFATAAYRIGHS 178
           +G+   IV  E++ +L G      +  +L     ++  N                   H 
Sbjct: 264 IGETIKIVIEEYVQQLSGYFLQLKFDPELLFGAQFQYRNRI-------AMEFNQLYHWHP 316

Query: 179 LLRPFIPRLGK 189
           L+        +
Sbjct: 317 LMPDSFRVGPQ 327


>d1xfka_ c.42.1.1 (A:) Formimidoylglutamase HutG {Vibrio cholerae
           [TaxId: 666]}
          Length = 324

 Score = 27.1 bits (59), Expect = 1.5
 Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 1/106 (0%)

Query: 24  GEHACQAKDLRSYDGKLNVTLMPGRKDLLPNTPTHPECRSRYCFVAGDGRASEQPGLTAM 83
           G H       +        T +   +  + N   H + R+    +A    +S  P    +
Sbjct: 116 GGHEIAWATFQGLAQHFLATGVKQPRIGIINFDAHFDLRTFESELAPVRPSSGTP-FNQI 174

Query: 84  HTILMREHNRLAEQLVQINPHWNDEQLFQHARRIMVGQWQHIVYNE 129
           H    ++        + ++   N   LF+ A ++ V   +   ++ 
Sbjct: 175 HHFCQQQGWDFHYACLGVSRASNTPALFERADKLGVWYVEDKAFSP 220


>d1cc1s_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit
           {Desulfomicrobium baculatum [TaxId: 899]}
          Length = 278

 Score = 25.0 bits (54), Expect = 7.0
 Identities = 11/76 (14%), Positives = 20/76 (26%), Gaps = 6/76 (7%)

Query: 2   QGFGPREQINQNSAYLDGSLIYGEHACQAK------DLRSYDGKLNVTLMPGRKDLLPNT 55
           + F   E+I +    + G   + +             L   +  L      GR  L    
Sbjct: 141 RDFFADEKIEKLLVNVPGCPPHPDWMVGTLVAAWSHVLNPTEHPLPELDDDGRPLLFFGD 200

Query: 56  PTHPECRSRYCFVAGD 71
             H  C     +   +
Sbjct: 201 NIHENCPYLDKYDNSE 216


>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 281

 Score = 24.4 bits (52), Expect = 9.4
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 78  PGLTAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIM---VGQWQHIVYNEFLPRL 134
           PGLT  + ++ R+     +    +  H   +   Q  R I+   V   Q  +      +L
Sbjct: 187 PGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVREIITNAVRIEQEFLTEALPVKL 246

Query: 135 LGLNA 139
           +G+N 
Sbjct: 247 IGMNC 251


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.139    0.437 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 737,579
Number of extensions: 32714
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 7
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.5 bits)