Query psy11277
Match_columns 66
No_of_seqs 126 out of 614
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 22:45:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11277.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11277hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d2v_C Myeloperoxidase; heme-p 99.9 1.3E-24 4.3E-29 162.8 6.3 55 10-66 118-172 (466)
2 1q4g_A Prostaglandin G/H synth 99.9 3.1E-24 1.1E-28 163.3 6.9 56 9-66 250-305 (553)
3 3q9k_A Lactoperoxidase, LPO; b 99.9 2.4E-24 8.3E-29 165.6 6.3 55 10-66 246-300 (595)
4 3nt1_A Prostaglandin-endoperox 99.9 5.2E-24 1.8E-28 163.7 5.5 56 9-66 250-305 (587)
5 3lqv_P Splicing factor 3B subu 59.0 8.7 0.0003 20.1 2.5 18 41-58 11-28 (39)
6 1u7k_A GAG polyprotein; capsid 58.9 6.5 0.00022 25.3 2.4 22 45-66 44-79 (131)
7 2atm_A Hyaluronoglucosaminidas 45.3 15 0.00053 26.6 2.9 21 44-64 131-151 (331)
8 1fcq_A Hyaluronoglucosaminidas 43.6 17 0.00058 26.7 2.9 20 45-64 136-155 (350)
9 2pe4_A Hyaluronidase-1; hyalur 38.9 21 0.00072 26.8 2.8 20 45-64 135-154 (424)
10 3sjr_A Uncharacterized protein 26.0 47 0.0016 22.3 2.5 25 27-58 96-120 (175)
11 3vta_A Cucumisin; subtilisin-l 25.2 42 0.0014 25.3 2.4 19 41-59 423-441 (621)
12 3h8k_B Autocrine motility fact 22.0 41 0.0014 16.1 1.2 9 56-64 15-23 (28)
13 1p3q_Q VPS9P, vacuolar protein 20.4 1.2E+02 0.0039 16.5 3.0 27 34-60 7-33 (54)
No 1
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Probab=99.90 E-value=1.3e-24 Score=162.78 Aligned_cols=55 Identities=42% Similarity=0.791 Sum_probs=52.9
Q ss_pred CCCcCCCcccchhhhhHHHHHHHHHHHHhhHHHHHHHHhhCCCCChHHHHHHHhhcC
Q psy11277 10 LQSSPGGNRTHNLMLFSMFAAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIM 66 (66)
Q Consensus 10 ~~~~~~gd~~~~~n~~p~L~~~htlf~ReHNriA~~L~~~nP~W~De~lfqeARkIv 66 (66)
.+||.+||.|+||| |+|+++||+|+|||||||++|++.||+|+||+||||||+||
T Consensus 118 ~~cf~~GD~R~ne~--p~l~~lhtlflReHNria~~L~~~nP~W~DE~LFqeAR~Iv 172 (466)
T 1d2v_C 118 IPCFLAGDTRSSEM--PELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIV 172 (466)
T ss_dssp CCCBCCSSTTTTSS--HHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred cchhcccCcccccC--HHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 46999999999996 99999999999999999999999999999999999999986
No 2
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=99.90 E-value=3.1e-24 Score=163.32 Aligned_cols=56 Identities=38% Similarity=0.589 Sum_probs=53.4
Q ss_pred cCCCcCCCcccchhhhhHHHHHHHHHHHHhhHHHHHHHHhhCCCCChHHHHHHHhhcC
Q psy11277 9 ALQSSPGGNRTHNLMLFSMFAAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIM 66 (66)
Q Consensus 9 ~~~~~~~gd~~~~~n~~p~L~~~htlf~ReHNriA~~L~~~nP~W~De~lfqeARkIv 66 (66)
..+||.+||.|+||+ |+|+++||||+|||||||++|++.||+|+||+|||||||||
T Consensus 250 ~~~cf~~GD~R~ne~--p~L~~lhtlflReHNria~~L~~~nP~W~DE~LFQeAR~Iv 305 (553)
T 1q4g_A 250 PQSQMAVGQEVFGLL--PGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLIL 305 (553)
T ss_dssp GGGSBCCSSTTGGGC--HHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred chhccccCccccCcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 356999999999996 99999999999999999999999999999999999999996
No 3
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Probab=99.90 E-value=2.4e-24 Score=165.65 Aligned_cols=55 Identities=44% Similarity=0.785 Sum_probs=52.9
Q ss_pred CCCcCCCcccchhhhhHHHHHHHHHHHHhhHHHHHHHHhhCCCCChHHHHHHHhhcC
Q psy11277 10 LQSSPGGNRTHNLMLFSMFAAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIM 66 (66)
Q Consensus 10 ~~~~~~gd~~~~~n~~p~L~~~htlf~ReHNriA~~L~~~nP~W~De~lfqeARkIv 66 (66)
.+||.+||.|+||+ |+|+++||||+|||||||++|++.||+|+||+|||||||||
T Consensus 246 ~~cf~aGD~R~ne~--p~L~~lhtlflREHNria~~L~~~nP~W~dE~LfQeAR~Iv 300 (595)
T 3q9k_A 246 VPCFLAGDFRASEQ--ILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKIL 300 (595)
T ss_dssp CCCBCCSSTTTTSB--HHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred CcccccCCcccccc--HHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Confidence 45999999999996 99999999999999999999999999999999999999996
No 4
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=99.89 E-value=5.2e-24 Score=163.71 Aligned_cols=56 Identities=38% Similarity=0.568 Sum_probs=52.4
Q ss_pred cCCCcCCCcccchhhhhHHHHHHHHHHHHhhHHHHHHHHhhCCCCChHHHHHHHhhcC
Q psy11277 9 ALQSSPGGNRTHNLMLFSMFAAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIM 66 (66)
Q Consensus 9 ~~~~~~~gd~~~~~n~~p~L~~~htlf~ReHNriA~~L~~~nP~W~De~lfqeARkIv 66 (66)
..+||.+||.|+||+ |+|+++||||+|||||||++|++.||+|+||+|||||||||
T Consensus 250 ~~~cf~~GD~R~ne~--pgL~alhtlflREHNriA~~L~~~nP~W~DE~LFQeAR~Iv 305 (587)
T 3nt1_A 250 ENLQFAVGQEVFGLV--PGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLIL 305 (587)
T ss_dssp GGGCBCCSSTTTTSC--HHHHHHHHHHHHHHHHHHHHHHC-CTTCCHHHHHHHHHHHH
T ss_pred cccccccCCcccccC--hHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 457999999999996 99999999999999999999999999999999999999996
No 5
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=59.04 E-value=8.7 Score=20.07 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.3
Q ss_pred HHHHHHHhhCCCCChHHH
Q psy11277 41 RLAEQLVQINPHWNDEQL 58 (66)
Q Consensus 41 riA~~L~~~nP~W~De~l 58 (66)
++...+..+|--|+||+|
T Consensus 11 ~~~~ei~~RNrpltDEeL 28 (39)
T 3lqv_P 11 RWEREIDERNRPLSDEEL 28 (39)
T ss_dssp HHHHHHHHTTCCCCHHHH
T ss_pred HhhccchhhcCCCCHHHH
Confidence 566778889999999987
No 6
>1u7k_A GAG polyprotein; capsid, viral protein; 1.85A {Endogenous} SCOP: a.73.1.1 PDB: 2y4z_A 3bp9_A
Probab=58.87 E-value=6.5 Score=25.34 Aligned_cols=22 Identities=27% Similarity=0.694 Sum_probs=16.2
Q ss_pred HHHhhCCCCCh--------------HHHHHHHhhcC
Q psy11277 45 QLVQINPHWND--------------EQLFQHARRIM 66 (66)
Q Consensus 45 ~L~~~nP~W~D--------------e~lfqeARkIv 66 (66)
.+..-+|.|+| +++..||||-|
T Consensus 44 i~~th~pTW~D~qqLL~tLlT~EEr~ril~eArk~v 79 (131)
T 1u7k_A 44 VLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAV 79 (131)
T ss_dssp HHHHTCCCHHHHHHHHHHHSCHHHHHHHHHHHHHTC
T ss_pred HHHhcCCCHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 34445799988 67889999854
No 7
>2atm_A Hyaluronoglucosaminidase; beta-alpha-barrels, hydrolase; HET: MES; 2.00A {Vespula vulgaris}
Probab=45.33 E-value=15 Score=26.64 Aligned_cols=21 Identities=19% Similarity=0.472 Sum_probs=16.9
Q ss_pred HHHHhhCCCCChHHHHHHHhh
Q psy11277 44 EQLVQINPHWNDEQLFQHARR 64 (66)
Q Consensus 44 ~~L~~~nP~W~De~lfqeARk 64 (66)
+..++.||.|+++++-.+|++
T Consensus 131 ~lv~~~hp~ws~~~v~~~A~~ 151 (331)
T 2atm_A 131 DLVRNEHPTWNKKXIELEASK 151 (331)
T ss_dssp HHHHHHCTTSCHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHH
Confidence 334678999999999988875
No 8
>1fcq_A Hyaluronoglucosaminidase; 7-stranded (beta/alpha) TIM barrel, glycosidase family 56, allergen, hydrolase; 1.60A {Apis mellifera} SCOP: c.1.8.9 PDB: 1fcu_A 1fcv_A* 2j88_A
Probab=43.58 E-value=17 Score=26.67 Aligned_cols=20 Identities=30% Similarity=0.682 Sum_probs=16.5
Q ss_pred HHHhhCCCCChHHHHHHHhh
Q psy11277 45 QLVQINPHWNDEQLFQHARR 64 (66)
Q Consensus 45 ~L~~~nP~W~De~lfqeARk 64 (66)
..++.||.|+.+++-.+|++
T Consensus 136 Lv~~~hp~ws~~~v~~~A~~ 155 (350)
T 1fcq_A 136 VVRREHPFWDDQRVEQEAKR 155 (350)
T ss_dssp HHHHHCTTSCHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHH
Confidence 34678999999999988875
No 9
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG BMA MAN; 2.00A {Homo sapiens}
Probab=38.94 E-value=21 Score=26.82 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=16.4
Q ss_pred HHHhhCCCCChHHHHHHHhh
Q psy11277 45 QLVQINPHWNDEQLFQHARR 64 (66)
Q Consensus 45 ~L~~~nP~W~De~lfqeARk 64 (66)
..++.||.|+++++-.+|++
T Consensus 135 Lv~~~hp~ws~~~v~~~A~~ 154 (424)
T 2pe4_A 135 LVQAQHPDWPAPQVEAVAQD 154 (424)
T ss_dssp HHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHH
Confidence 34578999999999988875
No 10
>3sjr_A Uncharacterized protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; 2.94A {Chromobacterium violaceum}
Probab=26.00 E-value=47 Score=22.26 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhCCCCChHHH
Q psy11277 27 MFAAMHTILMREHNRLAEQLVQINPHWNDEQL 58 (66)
Q Consensus 27 ~L~~~htlf~ReHNriA~~L~~~nP~W~De~l 58 (66)
.+.++-|.|+-- -+..||.|+.|.+
T Consensus 96 RIVsfaT~FF~~-------yq~qhPd~~~ee~ 120 (175)
T 3sjr_A 96 HLLLGMEILMEL-------YRQQHPDWTAPAI 120 (175)
T ss_dssp HHHHHHHHHHHH-------HHHTCSSSCHHHH
T ss_pred HHHHHHHHHHHH-------HHHhCCCCCHHHH
Confidence 345555555543 3578999998543
No 11
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=25.16 E-value=42 Score=25.25 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=15.8
Q ss_pred HHHHHHHhhCCCCChHHHH
Q psy11277 41 RLAEQLVQINPHWNDEQLF 59 (66)
Q Consensus 41 riA~~L~~~nP~W~De~lf 59 (66)
=+|+.|++.||+|+.++|-
T Consensus 423 GvaALl~q~~P~~spa~Ik 441 (621)
T 3vta_A 423 GIATYVKTYNPTWSPAAIK 441 (621)
T ss_dssp HHHHHHHHHCTTCCHHHHH
T ss_pred hHHHHHHHHCCCCCHHHHH
Confidence 4778888999999998864
No 12
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=21.99 E-value=41 Score=16.12 Aligned_cols=9 Identities=44% Similarity=0.892 Sum_probs=6.5
Q ss_pred HHHHHHHhh
Q psy11277 56 EQLFQHARR 64 (66)
Q Consensus 56 e~lfqeARk 64 (66)
++++++||+
T Consensus 15 ~~mi~~ARr 23 (28)
T 3h8k_B 15 DELLQQARK 23 (28)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 567777876
No 13
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=20.37 E-value=1.2e+02 Score=16.46 Aligned_cols=27 Identities=15% Similarity=0.152 Sum_probs=22.7
Q ss_pred HHHHhhHHHHHHHHhhCCCCChHHHHH
Q psy11277 34 ILMREHNRLAEQLVQINPHWNDEQLFQ 60 (66)
Q Consensus 34 lf~ReHNriA~~L~~~nP~W~De~lfq 60 (66)
+--+||+.--..|+...|..+.|-|=.
T Consensus 7 i~~~e~~~~~~~L~~MFP~lD~evI~~ 33 (54)
T 1p3q_Q 7 IEENERKDTLNTLQNMFPDMDPSLIED 33 (54)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccCCHHHHHH
Confidence 445899999999999999999887643
Done!