RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11277
(66 letters)
>gnl|CDD|188655 cd09823, peroxinectin_like, peroxinectin_like animal heme
peroxidases. Peroxinectin is an arthropod protein that
plays a role in invertebrate immunity mechanisms.
Specifically, peroxinectins are secreted as
cell-adhesive and opsonic peroxidases. The immunity
mechanism appears to involve an interaction between
peroxinectin and a transmembrane receptor of the
integrin family. Human myeloperoxidase, which is
included in this wider family, has also been reported to
interact with integrins.
Length = 378
Score = 81.5 bits (202), Expect = 3e-20
Identities = 22/38 (57%), Positives = 34/38 (89%)
Query: 29 AAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIM 66
+MHT+ +REHNR+A++L ++NPHW+DE+LFQ AR+I+
Sbjct: 80 TSMHTLFLREHNRIADELKKLNPHWDDERLFQEARKIV 117
>gnl|CDD|217366 pfam03098, An_peroxidase, Animal haem peroxidase.
Length = 521
Score = 78.5 bits (194), Expect = 3e-19
Identities = 22/39 (56%), Positives = 32/39 (82%)
Query: 28 FAAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIM 66
A+HT+ +REHNR+A++L +NPHW+DE+LFQ AR I+
Sbjct: 216 LTALHTLFLREHNRIADELKALNPHWSDEKLFQEARLIV 254
>gnl|CDD|188647 cd05396, An_peroxidase_like, Animal heme peroxidases and related
proteins. A diverse family of enzymes, which includes
prostaglandin G/H synthase, thyroid peroxidase,
myeloperoxidase, linoleate diol synthase,
lactoperoxidase, peroxinectin, peroxidasin, and others.
Despite its name, this family is not restricted to
metazoans: members are found in fungi, plants, and
bacteria as well.
Length = 370
Score = 67.8 bits (166), Expect = 2e-15
Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Query: 15 GGNRTHNLMLFSMFAAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIM 66
G R N L A+HT+ +REHNRLA++L + +P W+DE+L+Q AR I+
Sbjct: 71 GDPRV-NENLL--LLAVHTLFLREHNRLADRLKKEHPEWDDERLYQEARLIV 119
>gnl|CDD|188658 cd09826, peroxidasin_like, Animal heme peroxidase domain of
peroxidasin and related proteins. Peroxidasin is a
secreted heme peroxidase which is involved in hydrogen
peroxide metabolism and peroxidative reactions in the
cardiovascular system. The domain co-occurs with
extracellular matrix domains and may play a role in the
formation of the extracellular matrix.
Length = 440
Score = 64.6 bits (158), Expect = 3e-14
Identities = 17/36 (47%), Positives = 29/36 (80%)
Query: 30 AMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRI 65
+MHT+ +REHNR+A +L+++NPHW+ E ++ R+I
Sbjct: 123 SMHTLWLREHNRIASELLELNPHWDGETIYHETRKI 158
>gnl|CDD|188654 cd09822, peroxinectin_like_bacterial, Uncharacterized family of
heme peroxidases, mostly bacterial. Animal heme
peroxidases are diverse family of enzymes which are not
restricted to animals. Members are also found in
metazoans, fungi, and plants, and also in bacteria -
like most members of this family of uncharacterized
proteins.
Length = 420
Score = 62.7 bits (153), Expect = 1e-13
Identities = 19/36 (52%), Positives = 29/36 (80%)
Query: 30 AMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRI 65
A+HT+ +REHNRLA++L + NP +DE+++Q AR I
Sbjct: 128 ALHTLFVREHNRLADELARRNPSLSDEEIYQAARAI 163
>gnl|CDD|188648 cd09816, prostaglandin_endoperoxide_synthase, Animal prostaglandin
endoperoxide synthase and related bacterial proteins.
Animal prostaglandin endoperoxide synthases, including
prostaglandin H2 synthase and a set of similar bacterial
proteins which may function as cyclooxygenases.
Prostaglandin H2 synthase catalyzes the synthesis of
prostaglandin H2 from arachidonic acid. In two reaction
steps, arachidonic acid is converted to Prostaglandin
G2, a peroxide (cyclooxygenase activity) and
subsequently converted to the end product via the
enzyme's peroxidase activity. Prostaglandin H2 synthase
is the target of aspirin and other non-steroid
anti-inflammatory drugs such as ibuprofen, which block
the substrate's access to the active site and may
acetylate a conserved serine residue. In humans and
other mammals, prostaglandin H2 synthase (PGHS), also
called cyclooxygenase (COX) is present as at least two
isozymes, PGHS-1 (or COX-1) and PGHS-2 (or COX-2),
respectively. PGHS-1 is expressed constitutively in most
mammalian cells, while the expression of PGHS-2 is
induced via inflammation response in endothelial cells,
activated macrophages, and others. COX-3 is a splice
variant of COX-1.
Length = 490
Score = 61.9 bits (151), Expect = 2e-13
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 28 FAAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIM 66
++TI +REHNR+ + L + +P W+DE+LFQ AR I+
Sbjct: 212 LFMLNTIWLREHNRVCDILKKEHPDWDDERLFQTARNIL 250
>gnl|CDD|188657 cd09825, thyroid_peroxidase, Thyroid peroxidase (TPO). TPO is a
member of the animal heme peroxidase family, which is
expressed in the thyroid and involved in the processing
of iodine and iodine compounds. Specifically, TPO
oxidizes iodide via hydrogen peroxide to form active
iodine, which is then, for example, incorporated into
the tyrosine residues of thyroglobulin to yield mono-
and di-iodotyrosines.
Length = 565
Score = 60.9 bits (148), Expect = 6e-13
Identities = 22/39 (56%), Positives = 28/39 (71%)
Query: 27 MFAAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRI 65
A HT+ +REHNRLA L INPHW+ EQ++Q AR+I
Sbjct: 233 TLTASHTLWLREHNRLARALKSINPHWDGEQIYQEARKI 271
>gnl|CDD|188656 cd09824, myeloperoxidase_like, Myeloperoxidases, eosinophil
peroxidases, and lactoperoxidases. This well conserved
family of animal heme peroxidases contains members with
somewhat diverse functions. Myeloperoxidases are
lysosomal proteins found in azurophilic granules of
neutrophils and the lysosomes of monocytes. They are
involved in the formation of microbicidal agents upon
activation of activated neutrophils (neutrophils
undergoing respiratory bursts as a result of
phagocytosis), by catalyzing the conversion of hydrogen
peroxide to hypochlorous acid. As a heme protein,
myeloperoxidase is responsible for the greenish tint of
pus, which is rich in neutrophils. Eosinophil
peroxidases are haloperoxidases as well, preferring
bromide over chloride. Expressed by eosinophil
granulocytes, they are involved in attacking
multicellular parasites and play roles in various
inflammatory diseases such as asthma. The haloperoxidase
lactoperoxidase is secreted from mucosal glands and
provides antibacterial activity by oxidizing a variety
of substrates such as bromide or chloride in the
presence of hydrogen peroxide.
Length = 411
Score = 60.5 bits (147), Expect = 8e-13
Identities = 23/38 (60%), Positives = 33/38 (86%)
Query: 29 AAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIM 66
AA+HT+L+REHNRLA +L ++NPHW+ E L+Q AR+I+
Sbjct: 98 AALHTLLLREHNRLARELHRLNPHWDGETLYQEARKIV 135
>gnl|CDD|188650 cd09818, PIOX_like, Animal heme oxidases similar to plant
pathogen-inducible oxygenases. This is a diverse family
of oxygenases related to the animal heme peroxidases,
with members from plants, animals, and bacteria. The
plant pathogen-inducible oxygenases (PIOX) oxygenate
fatty acids into 2R-hydroperoxides. They may be involved
in the hypersensitive reaction, rapid and localized cell
death induced by infection with pathogens, and the
rapidly induced expression of PIOX may be caused by the
oxidative burst that occurs in the process of cell
death.
Length = 484
Score = 48.8 bits (117), Expect = 1e-08
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 29 AAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRI 65
+ +HT+ +REHN + + L + P W+DEQLF AR +
Sbjct: 149 SLLHTLFVREHNAICDALRKEYPDWSDEQLFDKARLV 185
>gnl|CDD|188652 cd09820, dual_peroxidase_like, Dual oxidase and related animal heme
peroxidases. Animal heme peroxidases of the
dual-oxidase like subfamily play vital roles in the
innate mucosal immunity of gut epithelia. They provide
reactive oxygen species which help control infection.
Length = 558
Score = 47.3 bits (113), Expect = 4e-08
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 16 GNRTHNLMLFSMFAAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRI 65
GN N F + + R HN LA+++ + +P W+DE +FQ AR+
Sbjct: 204 GNPRGNENPFLL--TFGILWFRYHNYLAQRIAREHPDWSDEDIFQEARKW 251
>gnl|CDD|177921 PLN02283, PLN02283, alpha-dioxygenase.
Length = 633
Score = 36.7 bits (85), Expect = 2e-04
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 28 FAAMHTILMREHNRLAEQLVQINPHWNDEQLFQHAR 63
+ + + ++EHN + + L + P ++DE+L++HAR
Sbjct: 266 VSLLQALFVKEHNAVCDALKEEYPDFDDEELYRHAR 301
>gnl|CDD|188653 cd09821, An_peroxidase_bacterial_2, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 570
Score = 35.1 bits (81), Expect = 7e-04
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 16/50 (32%)
Query: 30 AMHTILMREHNRLAEQLVQI----------------NPHWNDEQLFQHAR 63
A+HT+ REHNRL +Q+ N W+ E+LFQ AR
Sbjct: 193 AVHTVFHREHNRLVDQIKDTLLQSADLAFANEAGGNNLAWDGERLFQAAR 242
>gnl|CDD|188651 cd09819, An_peroxidase_bacterial_1, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 465
Score = 30.4 bits (69), Expect = 0.031
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 29 AAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRI 65
A +H +R HN + + L ++ LF+ ARR+
Sbjct: 158 AQLHLAFLRFHNAVVDALRAHGTPGDE--LFEEARRL 192
>gnl|CDD|188649 cd09817, linoleate_diol_synthase_like, Linoleate (8R)-dioxygenase
and related enzymes. These fungal enzymes, related to
animal heme peroxidases, catalyze the oxygenation of
linoleate and similar targets. Linoleate
(8R)-dioxygenase, also called linoleate:oxygen
7S,8S-oxidoreductase, generates
(9Z,12Z)-(7S,8S)-dihydroxyoctadeca-9,12-dienoate as a
product. Other members are 5,8-linoleate dioxygenase
(LDS, ppoA) and linoleate 10R-dioxygenase (ppoC),
involved in the biosynthesis of oxylipins.
Length = 550
Score = 28.8 bits (65), Expect = 0.12
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 17/46 (36%)
Query: 37 REHNRLAEQLVQIN-----------------PHWNDEQLFQHARRI 65
R HN + EQL QIN DE LFQ AR I
Sbjct: 174 RFHNYVVEQLAQINEGGRFTPPGDKLDSSAKEEKLDEDLFQTARLI 219
>gnl|CDD|205497 pfam13317, DUF4088, Protein of unknown function (DUF4088). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are typically between 258 and 300 amino
acids in length.
Length = 229
Score = 26.4 bits (58), Expect = 0.85
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 34 ILMREHNRLAEQLVQINPHWNDEQLFQHAR 63
LMR+ R L + W EQ +HAR
Sbjct: 71 ALMRDAQRFGFGLA-VQSDWTPEQRAEHAR 99
>gnl|CDD|180750 PRK06921, PRK06921, hypothetical protein; Provisional.
Length = 266
Score = 25.9 bits (57), Expect = 1.4
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 5 QNSLALQSSPGGNRTHNLMLFSMFAAMHTILMREH 39
+NS+AL PG +TH L AA + ++ ++
Sbjct: 117 KNSIALLGQPGSGKTHLLT-----AAANELMRKKG 146
>gnl|CDD|239161 cd02760, MopB_Phenylacetyl-CoA-OR, The MopB_Phenylacetyl-CoA-OR CD
contains the phenylacetyl-CoA:acceptor oxidoreductase,
large subunit (PadB2), and other related proteins. The
phenylacetyl-CoA:acceptor oxidoreductase has been
characterized as a membrane-bound molybdenum-iron-sulfur
enzyme involved in anaerobic metabolism of phenylalanine
in the denitrifying bacterium Thauera aromatica. Members
of this CD belong to the molybdopterin_binding (MopB)
superfamily of proteins.
Length = 760
Score = 25.3 bits (55), Expect = 2.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 35 LMREHNRLAEQLVQINPHWNDEQLFQHA 62
L+R L +L + HW DEQL ++
Sbjct: 717 LLRIGRELGNRLHEFLMHWWDEQLSEYR 744
>gnl|CDD|183489 PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase;
Provisional.
Length = 259
Score = 25.0 bits (55), Expect = 2.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 3 GLQNSLALQSSPGGNRTHNLML 24
GL SLAL + G H+LML
Sbjct: 163 GLTQSLALDLAEYGITVHSLML 184
>gnl|CDD|178511 PLN02923, PLN02923, xylose isomerase.
Length = 478
Score = 24.8 bits (54), Expect = 3.5
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 42 LAEQLVQ---INPHWNDEQLFQHAR 63
LA++L + I P W QLF+H R
Sbjct: 167 LAKELQEGTKIRPLWGTAQLFKHPR 191
>gnl|CDD|225636 COG3094, COG3094, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 129
Score = 24.7 bits (54), Expect = 3.9
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 26 SMFAAMHTILMREHNRLAEQLVQINPHWNDEQLF 59
S+F + ++ + ++I PH ND L
Sbjct: 19 SLFVIRFFLQLKGKAWREAKWLKILPHLNDTLLL 52
>gnl|CDD|220739 pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein
DNA-binding domain. The plasmid conjugative coupling
protein TrwB forms hexamers from six structurally very
similar protomers. This hexamer contains a central
channel running from the cytosolic pole (made up by the
AADs) to the membrane pole ending at the transmembrane
pore shaped by 12 transmembrane helices, rendering an
overall mushroom-like structure. The TrwB_AAD (all-alpha
domain) domain appears to be the DNA-binding domain of
the structure. TrwB, a basic integral inner-membrane
nucleoside-triphosphate-binding protein, is the
structural prototype for the type IV secretion system
coupling proteins, a family of proteins essential for
macromolecular transport between cells and export.
Length = 386
Score = 23.7 bits (52), Expect = 8.8
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 18 RTHNLMLFSMFAAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIM 66
R+ N +S F T + +RLAE L+ + +D AR +
Sbjct: 74 RSPN---WSPFNECETPY--DFDRLAESLIPESGGGSDPFWADAARTVF 117
>gnl|CDD|182609 PRK10640, rhaB, rhamnulokinase; Provisional.
Length = 471
Score = 23.5 bits (51), Expect = 9.2
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 23 MLFSMFAAMHTILMREHNRLAEQLVQINPH--WNDEQLFQHARR 64
ML ++ +RE +R L + W+ + L R
Sbjct: 1 MLARYERECRSLTLREIHRFNNGLHSQDGFDTWDVDSLESAIRL 44
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.132 0.395
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,290,740
Number of extensions: 234916
Number of successful extensions: 393
Number of sequences better than 10.0: 1
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 27
Length of query: 66
Length of database: 10,937,602
Length adjustment: 37
Effective length of query: 29
Effective length of database: 9,296,504
Effective search space: 269598616
Effective search space used: 269598616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.0 bits)