RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11277
(66 letters)
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 67.8 bits (165), Expect = 1e-15
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 28 FAAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIM 66
TI +REHNR+ + L Q +P W DEQLFQ +R I+
Sbjct: 267 LMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLIL 305
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 64.7 bits (157), Expect = 2e-14
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 29 AAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIM 66
TI +REHNR+ + L +P W DEQLFQ AR I+
Sbjct: 268 MLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLIL 305
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C*
1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Length = 466
Score = 64.1 bits (155), Expect = 2e-14
Identities = 21/39 (53%), Positives = 31/39 (79%)
Query: 28 FAAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIM 66
+MHT+L+REHNRLA +L +NP W+ E+L+Q AR+I+
Sbjct: 134 LTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIV 172
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase,
phenyl isothiocyanat iodide, PEG, edman reagent; HET:
SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A*
2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A*
3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A*
3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Length = 595
Score = 63.1 bits (152), Expect = 7e-14
Identities = 23/39 (58%), Positives = 32/39 (82%)
Query: 28 FAAMHTILMREHNRLAEQLVQINPHWNDEQLFQHARRIM 66
A HT+L+REHNRLA +L ++NPHWN E+L+Q AR+I+
Sbjct: 262 LATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKIL 300
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.058
Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 3/18 (16%)
Query: 1 MEGLQNSLAL---QSSPG 15
++ LQ SL L S+P
Sbjct: 22 LKKLQASLKLYADDSAPA 39
>1ji6_A Pesticidial crystal protein CRY3BB; toxin; 2.40A {Bacillus
thuringiensis} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Length = 589
Score = 26.0 bits (56), Expect = 1.0
Identities = 5/44 (11%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 16 GNRTHNLMLFSMFAAMHTILMREHNRLAEQL----VQINPHWND 55
L ++ A H +L+++ E+ + ++
Sbjct: 126 KFEVLFLPTYAQAANTHLLLLKDAQVFGEEWGYSSEDVAEFYHR 169
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.6 bits (55), Expect = 1.4
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 4/44 (9%)
Query: 7 SLALQSSPGGNRTHNLMLFSMFAAMHTILMREHNRLAEQLVQIN 50
Q P T N S+ A +R+ + +N
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAES----IRDGLATWDNWKHVN 351
>1ciy_A Cryia(A); toxin, ICP; 2.25A {Bacillus thuringiensis} SCOP: b.18.1.3
b.77.2.1 f.1.3.1
Length = 590
Score = 25.6 bits (55), Expect = 1.5
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 16 GNRTHNLMLFSMFAAMHTILMRE----HNRLAEQLVQINPHWND 55
+ L ++ A +H ++R+ R IN +ND
Sbjct: 124 NYQVPLLSVYVQAANLHLSVLRDVSVFGQRWGFDAATINSRYND 167
>1dlc_A Delta-endotoxin CRYIIIA; 2.50A {Bacillus thuringiensis} SCOP:
b.18.1.3 b.77.2.1 f.1.3.1
Length = 584
Score = 25.2 bits (54), Expect = 1.6
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 16 GNRTHNLMLFSMFAAMHTILMRE 38
G L ++ A H L+++
Sbjct: 128 GYEVLFLTTYAQAANTHLFLLKD 150
>1i5p_A Pesticidial crystal protein CRY2AA; helical bundle, beta prism,
lectin-like beta sandwich, jelly roll, toxin; 2.20A
{Bacillus thuringiensis serovarkurstaki} SCOP: b.18.1.3
b.77.2.1 f.1.3.1
Length = 633
Score = 24.5 bits (52), Expect = 3.1
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 16 GNRTHNLMLFSMFAAMHTILMREH 39
G + L LF+ A MH +R+
Sbjct: 168 GYQLLLLPLFAQAANMHLSFIRDV 191
>2qkg_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus
thuringiensis} PDB: 3eb7_A
Length = 589
Score = 24.4 bits (52), Expect = 3.4
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 16 GNRTHNLMLFSMFAAMHTILMRE 38
G L +++ A +H +L+++
Sbjct: 127 GYEVPLLSVYAQAANLHLLLLKD 149
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical
bundle, transport protein; HET: RBF; 3.60A
{Staphylococcus aureus}
Length = 189
Score = 23.3 bits (50), Expect = 6.3
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 17 NRTHNLMLFSMFAAMHTILM 36
+ L+ SM +A+ +L
Sbjct: 10 QQNKRLITISMLSAIAFVLT 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.132 0.395
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 956,423
Number of extensions: 41322
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 12
Length of query: 66
Length of database: 6,701,793
Length adjustment: 37
Effective length of query: 29
Effective length of database: 5,668,716
Effective search space: 164392764
Effective search space used: 164392764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.2 bits)