BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11278
(238 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24009|BICC_DROME Protein bicaudal C OS=Drosophila melanogaster GN=BicC PE=1 SV=2
Length = 905
Score = 243 bits (620), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 120/219 (54%), Positives = 161/219 (73%), Gaps = 3/219 (1%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLER 60
MK+DVSYTDHS+IIGRGG IK++M++T H+HFPDSNRS EKSNQVS+ GSL G+ER
Sbjct: 175 MKMDVSYTDHSYIIGRGGNNIKRIMDDTHTHIHFPDSNRSNPTEKSNQVSLCGSLEGVER 234
Query: 61 ARYRVRELTPLIFCFEYPLMGST---PNANSPFVQIIQEAYNVQVMFRNRPKLQPTLVMV 117
AR VR TPL+ FE P+MG P+ +P++++I+ +NVQV+F RPKL +LV+V
Sbjct: 235 ARALVRLSTPLLISFEMPVMGPNKPQPDHETPYIKMIETKFNVQVIFSTRPKLHTSLVLV 294
Query: 118 KGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQT 177
KG EK+ +V++AT LI C S+A+Q V + MEISPQHH I++G N +NL +IM +T
Sbjct: 295 KGSEKESAQVRDATQLLINFACESIASQILVNVQMEISPQHHEIVKGKNNVNLLSIMERT 354
Query: 178 GAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLV 216
+I+FP+ +D + LKKS VT+SG ID VYLARQ L+
Sbjct: 355 QTKIIFPDLSDMNVKPLKKSQVTISGRIDDVYLARQQLL 393
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 71/136 (52%), Gaps = 5/136 (3%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPD-SNRSVNAEKSNQVSIAGSLLGLE 59
+++++S H + G+ + + +ME T + FPD S+ +V K +QV+I+G + +
Sbjct: 327 VQMEISPQHHEIVKGKNNVNLLSIMERTQTKIIFPDLSDMNVKPLKKSQVTISGRIDDVY 386
Query: 60 RARYRVRELTPLIFCFEYPLMGSTPNANSPFVQIIQEAYNVQVMFRNRPKLQPTLVMVKG 119
AR ++ P+ F++P + ++ + + Y V + R + + ++VKG
Sbjct: 387 LARQQLLGNLPVALIFDFP----DNHNDASEIMSLNTKYGVYITLRQKQRQSTLAIVVKG 442
Query: 120 CEKDVERVKEATTKLI 135
EK ++++ EA +++
Sbjct: 443 VEKFIDKIYEARQEIL 458
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 124 VERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVF 183
V++V+ A +++ + + T VIM M++S H + G N+K IM T I F
Sbjct: 152 VDQVQRAKERILSSLD---SRGTRVIMKMDVSYTDHSYIIGRGGNNIKRIMDDTHTHIHF 208
Query: 184 PEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSS 219
P++N P K + V++ G+++ V AR ++ +S+
Sbjct: 209 PDSNRS-NPTEKSNQVSLCGSLEGVERARALVRLST 243
>sp|Q5U4T7|BIC1B_XENLA Protein bicaudal C homolog 1-B OS=Xenopus laevis GN=bicc1-b PE=2
SV=1
Length = 970
Score = 232 bits (591), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 152/219 (69%), Gaps = 7/219 (3%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLER 60
+K+DVS+T+HSH+IG+GG IKKVMEETGCH+HFPDSNR+ AEKSNQVSIAG G+E
Sbjct: 133 LKMDVSHTEHSHVIGKGGNNIKKVMEETGCHIHFPDSNRNNQAEKSNQVSIAGQPAGVES 192
Query: 61 ARYRVRELTPLIFCFEYPLMG---STPNANSPFVQIIQEAYNVQVMFRNRPKLQPTLVMV 117
AR R+REL PL+ FE P+ G P+ NSP +Q I + YN+ V F+ R ++ V+V
Sbjct: 193 ARVRIRELLPLVLMFELPIAGILQPIPDPNSPTIQQISQTYNITVSFKQRSRVYGATVIV 252
Query: 118 KGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQT 177
+G + + VKE T L+EH+ GSLA+ V ++I+ QHH M G N N+K IM +T
Sbjct: 253 RGSQNNTSAVKEGTAMLLEHLAGSLASAIPVSTQLDIAAQHHLFMMGRNGCNIKHIMQRT 312
Query: 178 GAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLV 216
GAQI FP+ N+P LKKS+V + G I+SV LARQ L+
Sbjct: 313 GAQIHFPDPNNP----LKKSTVYLQGTIESVCLARQYLM 347
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 90 FVQIIQEAYNVQVMFRNRPKL-----QPTLVMVKGCEKDVERVKEATTKLIEHMCGSLAN 144
F Q I E N Q+ + ++ K+ + + V G +++V+ KE +++
Sbjct: 74 FFQKIMEETNTQIAWPSKLKIGAKSKKDPHIKVSGKKENVKEAKERIMSVLD------TK 127
Query: 145 QTSVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGN 204
V + M++S H + G N+K +M +TG I FP++N + + S
Sbjct: 128 SNRVTLKMDVSHTEHSHVIGKGGNNIKKVMEETGCHIHFPDSN-------RNNQAEKS-- 178
Query: 205 IDSVYLARQMLVVSSVRPRRRLLL 228
+ V +A Q V S R R R LL
Sbjct: 179 -NQVSIAGQPAGVESARVRIRELL 201
>sp|Q9IA00|BIC1A_XENLA Protein bicaudal C homolog 1-A OS=Xenopus laevis GN=bicc1-a PE=2
SV=1
Length = 963
Score = 230 bits (587), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 150/219 (68%), Gaps = 7/219 (3%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLER 60
+K+DV +T+HSH+IG+GG IKKVMEETGCH+HFPDSNR+ AEKSNQVSIAG G+E
Sbjct: 131 LKMDVLHTEHSHVIGKGGNNIKKVMEETGCHIHFPDSNRNNQAEKSNQVSIAGQPAGVES 190
Query: 61 ARYRVRELTPLIFCFEYPLMG---STPNANSPFVQIIQEAYNVQVMFRNRPKLQPTLVMV 117
AR R+REL PL+ FE P+ G P+ NSP +Q I + YN+ V F+ R ++ V+V
Sbjct: 191 ARVRIRELLPLVLMFELPIAGILQPIPDPNSPTIQQISQTYNLTVSFKQRSRVYGATVIV 250
Query: 118 KGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQT 177
+G + + VKE T L+EH+ GSLA V ++I+ QHH M G N N+K IM +T
Sbjct: 251 RGSQNNTSAVKEGTAMLLEHLAGSLATAIPVSTQLDIAAQHHLFMMGRNGCNIKHIMQRT 310
Query: 178 GAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLV 216
GAQI FP+ N+P LKKS+V + G IDSV LARQ L+
Sbjct: 311 GAQIHFPDPNNP----LKKSTVYLQGTIDSVCLARQYLM 345
Score = 38.1 bits (87), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 21/144 (14%)
Query: 90 FVQIIQEAYNVQVMFRNRPKL-----QPTLVMVKGCEKDVERVKEATTKLIEHMCGSLAN 144
F Q I E N Q+ + ++ K+ + + V G +++V+ KE +++ + +N
Sbjct: 72 FFQKIMEETNTQIAWPSKLKIGAKSKKDPHIKVSGKKENVKEAKERIMSVLD----TKSN 127
Query: 145 QTSVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGN 204
+ ++ M + + H I +G N N+K +M +TG I FP++N + + S
Sbjct: 128 RVTLKMDVLHTEHSHVIGKGGN--NIKKVMEETGCHIHFPDSN-------RNNQAEKS-- 176
Query: 205 IDSVYLARQMLVVSSVRPRRRLLL 228
+ V +A Q V S R R R LL
Sbjct: 177 -NQVSIAGQPAGVESARVRIRELL 199
>sp|Q9H694|BICC1_HUMAN Protein bicaudal C homolog 1 OS=Homo sapiens GN=BICC1 PE=1 SV=2
Length = 974
Score = 228 bits (581), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 151/219 (68%), Gaps = 7/219 (3%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLER 60
+K+DVS+T+HSH+IG+GG IKKVMEETGCH+HFPDSNR+ AEKSNQVSIAG G+E
Sbjct: 135 LKMDVSHTEHSHVIGKGGNNIKKVMEETGCHIHFPDSNRNNQAEKSNQVSIAGQPAGVES 194
Query: 61 ARYRVRELTPLIFCFEYPLMG---STPNANSPFVQIIQEAYNVQVMFRNRPKLQPTLVMV 117
AR R+REL PL+ FE P+ G P+ NSP +Q I + YN+ V F+ R ++ V+V
Sbjct: 195 ARVRIRELLPLVLMFELPIAGILQPVPDPNSPSIQHISQTYNISVSFKQRSRMYGATVIV 254
Query: 118 KGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQT 177
+G + + VKE T L+EH+ GSLA+ V ++I+ QHH M G N N+K IM +T
Sbjct: 255 RGSQNNTSAVKEGTAMLLEHLAGSLASAIPVSTQLDIAAQHHLFMMGRNGSNIKHIMQRT 314
Query: 178 GAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLV 216
GAQI FP+ ++P KKS+V + G I+SV LARQ L+
Sbjct: 315 GAQIHFPDPSNP----QKKSTVYLQGTIESVCLARQYLM 349
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 90 FVQIIQEAYNVQVMFRNRPKL-----QPTLVMVKGCEKDVERVKEATTKLIEHMCGSLAN 144
F Q I E N Q+ + ++ K+ + + V G ++DV+ KE +++
Sbjct: 76 FFQKIMEETNTQIAWPSKLKIGAKSKKDPHIKVSGKKEDVKEAKEMIMSVLD------TK 129
Query: 145 QTSVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGN 204
V + M++S H + G N+K +M +TG I FP++N + + S
Sbjct: 130 SNRVTLKMDVSHTEHSHVIGKGGNNIKKVMEETGCHIHFPDSN-------RNNQAEKS-- 180
Query: 205 IDSVYLARQMLVVSSVRPRRRLLL 228
+ V +A Q V S R R R LL
Sbjct: 181 -NQVSIAGQPAGVESARVRIRELL 203
>sp|Q99MQ1|BICC1_MOUSE Protein bicaudal C homolog 1 OS=Mus musculus GN=Bicc1 PE=2 SV=1
Length = 977
Score = 223 bits (569), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 111/219 (50%), Positives = 150/219 (68%), Gaps = 7/219 (3%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLER 60
+K+DVS+T+HSH+IG+GG IKKVME+TGCH+HFPDSNR+ AEKSNQVSIAG G+E
Sbjct: 137 LKMDVSHTEHSHVIGKGGNNIKKVMEDTGCHIHFPDSNRNNQAEKSNQVSIAGQPAGVES 196
Query: 61 ARYRVRELTPLIFCFEYPLMG---STPNANSPFVQIIQEAYNVQVMFRNRPKLQPTLVMV 117
AR R+REL PL+ FE P+ G P+ N+P +Q I + Y+V V F+ R ++ V V
Sbjct: 197 ARARIRELLPLVLMFELPIAGILQPVPDPNTPSIQHISQTYSVSVSFKQRSRMYGATVTV 256
Query: 118 KGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQT 177
+G + + VKE T L+EH+ GSLA+ V ++I+ QHH M G N N+K IM +T
Sbjct: 257 RGSQNNTNAVKEGTAMLLEHLAGSLASAIPVSTQLDIAAQHHLFMMGRNGSNVKHIMQRT 316
Query: 178 GAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLV 216
GAQI FP+ ++P KKS+V + G I+SV LARQ L+
Sbjct: 317 GAQIHFPDPSNP----QKKSTVYLQGTIESVCLARQYLM 351
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 21/144 (14%)
Query: 90 FVQIIQEAYNVQVMFRNRPKL-----QPTLVMVKGCEKDVERVKEATTKLIEHMCGSLAN 144
F Q I E N Q+ + ++ K+ + + V G ++DV+ KE +++
Sbjct: 78 FFQKIMEETNTQIAWPSKLKIGAKSKKDPHIKVSGKKEDVKEAKEMIMSVLD------TK 131
Query: 145 QTSVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGN 204
V + M++S H + G N+K +M TG I FP++N + + S
Sbjct: 132 SNRVTLKMDVSHTEHSHVIGKGGNNIKKVMEDTGCHIHFPDSN-------RNNQAEKS-- 182
Query: 205 IDSVYLARQMLVVSSVRPRRRLLL 228
+ V +A Q V S R R R LL
Sbjct: 183 -NQVSIAGQPAGVESARARIRELL 205
>sp|Q9Z1A6|VIGLN_RAT Vigilin OS=Rattus norvegicus GN=Hdlbp PE=1 SV=1
Length = 1268
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 89/214 (41%), Gaps = 24/214 (11%)
Query: 10 HSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRV---- 65
H +IIG+GG IKK+ EE+ + P N + S + I G E AR R+
Sbjct: 593 HKNIIGKGGANIKKIREESNTKIDLPAENSN-----SETIVITGKRANCEAARSRILSIQ 647
Query: 66 ---RELTPLIFCFEYPLMGSTPNANSPFVQ-IIQEAYNVQVMFRNRPKLQPTLVMVKGCE 121
+ + L S ++ I++E V + F T+V ++G
Sbjct: 648 KDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVV-IRGPS 706
Query: 122 KDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQI 181
DVE+ K+ L E S + + P++H + G ++ + TGA+I
Sbjct: 707 SDVEKAKKQLLHLAEE-----KQTKSFTVDIRAKPEYHKFLIGKGGGKIRKVRDSTGARI 761
Query: 182 VFPEANDPIIPVLKKSSVTVSGNIDSVYLARQML 215
+FP A D + +T+ G D+V A++ L
Sbjct: 762 IFPAAEDK-----DQDLITIIGKEDAVREAQKEL 790
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 93/227 (40%), Gaps = 30/227 (13%)
Query: 10 HSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERA-RYRVREL 68
H +IG+GG I+KV + TG + FP AE +Q I +++G E A R +EL
Sbjct: 739 HKFLIGKGGGKIRKVRDSTGARIIFP------AAEDKDQDLI--TIIGKEDAVREAQKEL 790
Query: 69 TPLIFCFE---YPLMGSTPNANSPFV--------QIIQEAYNVQVMFRNRPKLQPTLVMV 117
LI + M P + FV +I +E V V F R Q V +
Sbjct: 791 EALIQNLDNVVEDYMLVDPRHHRHFVIRRGQVLREIAEEYGGVMVSF-PRSGTQSDKVTL 849
Query: 118 KGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQT 177
KG + VE K+ ++IE + + V + I + H + GP ++ I
Sbjct: 850 KGAKDCVEAAKKRIQEIIEDL------EAQVTLECAIPQKFHRSVMGPKGSRIQQITRDY 903
Query: 178 GAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSSVRPRR 224
QI FP+ + + ++ S + N D R+ PRR
Sbjct: 904 NVQIKFPDREENPVHSVEPS---IQENGDEAGEGREAKETDPGSPRR 947
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 86/194 (44%), Gaps = 17/194 (8%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLER 60
+++++ + H H+IG+ G I ++ ++ V P ++EKSN + I G G+++
Sbjct: 438 VEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPP-----DSEKSNLIRIEGDPQGVQQ 492
Query: 61 ARYRVRELTPLI-------FCFEYPLMGSTPNANSPFVQIIQEAYNVQVMFRNRPKLQPT 113
A+ + EL + E + ++ I++ + ++ P +
Sbjct: 493 AKRELLELASRMENERTKDLIIEQRFHRTIIGQKGERIREIRDKFPEVIINFPDPAQKSE 552
Query: 114 LVMVKGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTI 173
+V ++G + +VE+ TK ++ M L + S + + I Q H + G N+K I
Sbjct: 553 IVQLRGPKNEVEKC----TKYMQKMVADLV-ENSYSISVPIFKQFHKNIIGKGGANIKKI 607
Query: 174 MAQTGAQIVFPEAN 187
++ +I P N
Sbjct: 608 REESNTKIDLPAEN 621
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 101/247 (40%), Gaps = 58/247 (23%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLER 60
++++V + H +IIG+ G I+K+M+E ++H P +S+ ++I G L+R
Sbjct: 975 IEVEVPFDLHRYIIGQKGSGIRKMMDEFEVNIHVPAPEL-----QSHTIAITGLAANLDR 1029
Query: 61 ARY----RVRELTP-----------LIFCFEYPLMGSTPNANSPFVQIIQEAYNVQVMF- 104
A+ RV+EL L + + I+ ++V + F
Sbjct: 1030 AKAGLLDRVKELQAEQEDRALRSFKLSVTVDPKYHPKIIGGKGAVITQIRLEHDVNIQFP 1089
Query: 105 ----RNRPKLQPTLVMVKGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHP 160
N+P+ Q + + G EK+ E ++A K++ G L M+ E P H
Sbjct: 1090 DKDDGNQPQDQ---ITITGYEKNTEAARDAILKIV----GELEQ-----MVSEDVPLDHR 1137
Query: 161 IME---GPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSG-------------N 204
+ G ++ IM + I FP++ P + VTV+G N
Sbjct: 1138 VHARIIGARGKAIRKIMDEFKVDIRFPQSGAP-----DPNCVTVTGLPENVEEAIDHILN 1192
Query: 205 IDSVYLA 211
++ YLA
Sbjct: 1193 LEEEYLA 1199
Score = 34.3 bits (77), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 39/229 (17%)
Query: 10 HSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELT 69
H +IG+ G ++ + +T + P + + SNQ+ I G+ G+E+AR+ V
Sbjct: 162 HRFVIGKNGEKLQDLELKTATKIQIPRPD-----DPSNQIKITGTKEGIEKARHEV---- 212
Query: 70 PLIFCFEYPLMG----STPNANSPFV---------QIIQEA---YNVQVMFRNRPKLQPT 113
L+ E A PF+ +I+QE N+ P + T
Sbjct: 213 -LLISAEQDKRAVKRLEVEKAFHPFIAGPYNRLVGEIMQETGTRINIPP-----PSVNRT 266
Query: 114 LVMVKGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTI 173
++ G + E++ +A ++ + T++ +E+ H + GP +L+ I
Sbjct: 267 EIVFTG---EKEQLAQAVARIKKIYEEKKKKTTTI--AVEVKKSQHKYVIGPKGNSLQEI 321
Query: 174 MAQTGAQIVFPEANDPIIP--VLKKSSVTVSGNIDSVYLARQMLVVSSV 220
+ +TG + P +D I +L+ + + VY VSSV
Sbjct: 322 LERTGVSVEIP-PSDSISETVILRGEPEKLGQALTEVYAKANSFTVSSV 369
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 18/160 (11%)
Query: 10 HSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERAR------- 62
H IIG G I ++ E ++ FPD + + +Q++I G E AR
Sbjct: 1064 HPKIIGGKGAVITQIRLEHDVNIQFPDKDD--GNQPQDQITITGYEKNTEAARDAILKIV 1121
Query: 63 ----YRVRELTPLIFCFEYPLMGSTPNANSPFVQIIQEAYNVQVMFRNRPKLQPTLVMVK 118
V E PL ++G+ A ++ I + + V + F P V V
Sbjct: 1122 GELEQMVSEDVPLDHRVHARIIGARGKA----IRKIMDEFKVDIRFPQSGAPDPNCVTVT 1177
Query: 119 GCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQH 158
G ++VE + L E + + ++ + M+ P H
Sbjct: 1178 GLPENVEEAIDHILNLEEEYLADVVDSEALQVYMK-PPAH 1216
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 9/151 (5%)
Query: 75 FEYPLMGSTPNANSPFVQIIQEAYNVQVMFRNRPKLQPTLVMVKGCEKDVERVKEATTKL 134
F PL + F + Q +++M R L+ +L +G V +A K
Sbjct: 80 FHVPLEERKYKDMNQFGEGEQAKICLEIMQRTGAHLELSLAKDQGLSIMVSGKLDAVMKA 139
Query: 135 IEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVL 194
+ + L Q S + I +HH + G N L+ + +T +I P +DP
Sbjct: 140 RKDIVARLQTQASA--TVPIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDP----- 192
Query: 195 KKSSVTVSGNIDSVYLAR-QMLVVSSVRPRR 224
+ + ++G + + AR ++L++S+ + +R
Sbjct: 193 -SNQIKITGTKEGIEKARHEVLLISAEQDKR 222
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/238 (16%), Positives = 90/238 (37%), Gaps = 35/238 (14%)
Query: 10 HSHIIGRGGLTIKKVMEETGCHVHFPDSNRS----------VNAEKSNQ----------- 48
H ++G G I+++ + + FPD + N +++ +
Sbjct: 885 HRSVMGPKGSRIQQITRDYNVQIKFPDREENPVHSVEPSIQENGDEAGEGREAKETDPGS 944
Query: 49 ------VSIAGSLLGLERARYRVRELTPLIFCFEYP--LMGSTPNANSPFVQIIQEAYNV 100
+ I+G E A+ + L P+ E P L ++ + + + V
Sbjct: 945 PRRCDIIVISGRKEKCEAAKEALEALVPVTIEVEVPFDLHRYIIGQKGSGIRKMMDEFEV 1004
Query: 101 QVMFRNRPKLQPTLVMVKGCEKDVERVKEATTKLIEHMCGSLANQT--SVIMMMEISPQH 158
+ P+LQ + + G +++R K ++ + ++ S + + + P++
Sbjct: 1005 NIHV-PAPELQSHTIAITGLAANLDRAKAGLLDRVKELQAEQEDRALRSFKLSVTVDPKY 1063
Query: 159 HPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLV 216
HP + G + I + I FP+ +D P + +T++G + AR ++
Sbjct: 1064 HPKIIGGKGAVITQIRLEHDVNIQFPDKDDGNQP---QDQITITGYEKNTEAARDAIL 1118
>sp|Q8VDJ3|VIGLN_MOUSE Vigilin OS=Mus musculus GN=Hdlbp PE=1 SV=1
Length = 1268
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 89/214 (41%), Gaps = 24/214 (11%)
Query: 10 HSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRV---- 65
H +IIG+GG IKK+ EE+ + P N + S + I G E AR R+
Sbjct: 593 HKNIIGKGGANIKKIREESNTKIDLPAENSN-----SETIIITGKRANCEAARSRILSIQ 647
Query: 66 ---RELTPLIFCFEYPLMGSTPNANSPFVQ-IIQEAYNVQVMFRNRPKLQPTLVMVKGCE 121
+ + L S ++ I++E V + F T+V ++G
Sbjct: 648 KDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVV-IRGPS 706
Query: 122 KDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQI 181
DVE+ K+ L E S + + P++H + G ++ + TGA+I
Sbjct: 707 SDVEKAKKQLLHLAEE-----KQTKSFTVDIRAKPEYHKFLIGKGGGKIRKVRDSTGARI 761
Query: 182 VFPEANDPIIPVLKKSSVTVSGNIDSVYLARQML 215
+FP A D + +T+ G D+V A++ L
Sbjct: 762 IFPAAEDK-----DQDLITIIGKEDAVREAQKEL 790
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 96/232 (41%), Gaps = 30/232 (12%)
Query: 10 HSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERA-RYRVREL 68
H +IG+GG I+KV + TG + FP AE +Q I +++G E A R +EL
Sbjct: 739 HKFLIGKGGGKIRKVRDSTGARIIFP------AAEDKDQDLI--TIIGKEDAVREAQKEL 790
Query: 69 TPLIFCFE---YPLMGSTPNANSPFV--------QIIQEAYNVQVMFRNRPKLQPTLVMV 117
LI E M P + FV +I +E V V F R Q V +
Sbjct: 791 EALIQNLENVVEDYMLVDPKHHRHFVIRRGQVLREIAEEYGGVMVSF-PRSGTQSDKVTL 849
Query: 118 KGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQT 177
KG + VE K+ ++IE + + V + I + H + GP ++ I
Sbjct: 850 KGAKDCVEAAKKRIQEIIEDL------EAQVTVECAIPQKFHRSVMGPKGSRIQQITRDY 903
Query: 178 GAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSSVRPRRRLLLI 229
QI FP+ + + ++ S + N D R+ PRR ++I
Sbjct: 904 NVQIKFPDREENPVHSVEPS---IQENGDEAGEGREAKETDPGSPRRCDIII 952
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 86/194 (44%), Gaps = 17/194 (8%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLER 60
+++++ + H H+IG+ G I ++ ++ V P ++EKSN + I G G+++
Sbjct: 438 VEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPP-----DSEKSNLIRIEGDPQGVQQ 492
Query: 61 ARYRVRELTPLI-------FCFEYPLMGSTPNANSPFVQIIQEAYNVQVMFRNRPKLQPT 113
A+ + EL + E + ++ I++ + ++ P +
Sbjct: 493 AKRELLELASRMENERTKDLIIEQRFHRTIIGQKGERIREIRDKFPEVIINFPDPAQKSD 552
Query: 114 LVMVKGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTI 173
+V ++G + +VE+ TK ++ M L + S + + I Q H + G N+K I
Sbjct: 553 IVQLRGPKNEVEKC----TKYMQKMVADLV-ENSYSISVPIFKQFHKNIIGKGGANIKKI 607
Query: 174 MAQTGAQIVFPEAN 187
++ +I P N
Sbjct: 608 REESNTKIDLPAEN 621
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 100/247 (40%), Gaps = 58/247 (23%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLER 60
++++V + H +IIG+ G I+K+M+E ++H P +S+ ++I G L+R
Sbjct: 975 IEVEVPFDLHRYIIGQKGSGIRKMMDEFEVNIHVPAPEL-----QSDTIAITGLAANLDR 1029
Query: 61 ARY----RVRELTP-----------LIFCFEYPLMGSTPNANSPFVQIIQEAYNVQVMF- 104
A+ RV+EL L + + I+ + V + F
Sbjct: 1030 AKAGLLDRVKELQAEQEDRALRSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHEVNIQFP 1089
Query: 105 ----RNRPKLQPTLVMVKGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHP 160
N+P+ Q + + G EK+ E ++A K++ G L M+ E P H
Sbjct: 1090 DKDDGNQPQDQ---ITITGYEKNTEAARDAILKIV----GELEQ-----MVSEDVPLDHR 1137
Query: 161 IME---GPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSG-------------N 204
+ G ++ IM + I FP++ P + VTV+G N
Sbjct: 1138 VHARIIGARGKAIRKIMDEFKVDIRFPQSGAP-----DPNCVTVTGLPENVEEAIDHILN 1192
Query: 205 IDSVYLA 211
++ YLA
Sbjct: 1193 LEEEYLA 1199
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 18/161 (11%)
Query: 10 HSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERAR------- 62
H IIGR G I ++ E ++ FPD + + +Q++I G E AR
Sbjct: 1064 HPKIIGRKGAVITQIRLEHEVNIQFPDKDDG--NQPQDQITITGYEKNTEAARDAILKIV 1121
Query: 63 ----YRVRELTPLIFCFEYPLMGSTPNANSPFVQIIQEAYNVQVMFRNRPKLQPTLVMVK 118
V E PL ++G+ A ++ I + + V + F P V V
Sbjct: 1122 GELEQMVSEDVPLDHRVHARIIGARGKA----IRKIMDEFKVDIRFPQSGAPDPNCVTVT 1177
Query: 119 GCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHH 159
G ++VE + L E + + ++ + M+ P H
Sbjct: 1178 GLPENVEEAIDHILNLEEEYLADVVDSEALQVYMK-PPAHE 1217
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 39/229 (17%)
Query: 10 HSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELT 69
H +IG+ G ++ + +T + P + + SNQ+ I G+ G+E+AR+ V
Sbjct: 162 HRFVIGKNGEKLQDLELKTATKIQIPRPD-----DPSNQIKITGTKEGIEKARHEV---- 212
Query: 70 PLIFCFEYPLMG----STPNANSPFV---------QIIQEA---YNVQVMFRNRPKLQPT 113
L+ E A PF+ +I+QE N+ P + T
Sbjct: 213 -LLISAEQDKRAVERLEVEKAFHPFIAGPYNRLVGEIMQETGTRINIPP-----PSVNRT 266
Query: 114 LVMVKGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTI 173
++ G + E++ +A ++ + T++ +E+ H + GP +L+ I
Sbjct: 267 EIVFTG---EKEQLAQAVARIKKIYEEKKKKTTTI--AVEVKKSQHKYVIGPKGNSLQEI 321
Query: 174 MAQTGAQIVFPEANDPIIP--VLKKSSVTVSGNIDSVYLARQMLVVSSV 220
+ +TG + P +D I +L+ + + VY VSSV
Sbjct: 322 LERTGVSVEIP-PSDSISETVILRGEPEKLGQALTEVYAKANSFTVSSV 369
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 9/151 (5%)
Query: 75 FEYPLMGSTPNANSPFVQIIQEAYNVQVMFRNRPKLQPTLVMVKGCEKDVERVKEATTKL 134
F PL + F + Q +++M R L+ +L +G V +A K
Sbjct: 80 FHVPLEERKYKDMNQFGEGEQAKICLEIMQRTGAHLELSLAKDQGLSIMVSGKLDAVMKA 139
Query: 135 IEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVL 194
+ + L Q S + I +HH + G N L+ + +T +I P +DP
Sbjct: 140 RKDIVARLQTQASA--TVPIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDP----- 192
Query: 195 KKSSVTVSGNIDSVYLAR-QMLVVSSVRPRR 224
+ + ++G + + AR ++L++S+ + +R
Sbjct: 193 -SNQIKITGTKEGIEKARHEVLLISAEQDKR 222
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/111 (18%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 108 PKLQPTLVMVKGCEKDVERVKEATTKLIEHMCGSLANQT--SVIMMMEISPQHHPIMEGP 165
P+LQ + + G +++R K ++ + ++ S + + + P++HP + G
Sbjct: 1011 PELQSDTIAITGLAANLDRAKAGLLDRVKELQAEQEDRALRSFKLSVTVDPKYHPKIIGR 1070
Query: 166 NAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLV 216
+ I + I FP+ +D P + +T++G + AR ++
Sbjct: 1071 KGAVITQIRLEHEVNIQFPDKDDGNQP---QDQITITGYEKNTEAARDAIL 1118
>sp|Q00341|VIGLN_HUMAN Vigilin OS=Homo sapiens GN=HDLBP PE=1 SV=2
Length = 1268
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 89/214 (41%), Gaps = 24/214 (11%)
Query: 10 HSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRV---- 65
H +IIG+GG IKK+ EE+ + P N + S + I G E AR R+
Sbjct: 593 HKNIIGKGGANIKKIREESNTKIDLPAENSN-----SETIIITGKRANCEAARSRILSIQ 647
Query: 66 ---RELTPLIFCFEYPLMGSTPNANSPFVQ-IIQEAYNVQVMFRNRPKLQPTLVMVKGCE 121
+ + L S ++ I++E V + F T+V ++G
Sbjct: 648 KDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVV-IRGPS 706
Query: 122 KDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQI 181
DVE+ K+ L E S + + P++H + G ++ + TGA++
Sbjct: 707 SDVEKAKKQLLHLAEE-----KQTKSFTVDIRAKPEYHKFLIGKGGGKIRKVRDSTGARV 761
Query: 182 VFPEANDPIIPVLKKSSVTVSGNIDSVYLARQML 215
+FP A D + +T+ G D+V A++ L
Sbjct: 762 IFPAAEDK-----DQDLITIIGKEDAVREAQKEL 790
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 95/232 (40%), Gaps = 30/232 (12%)
Query: 10 HSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERA-RYRVREL 68
H +IG+GG I+KV + TG V FP AE +Q I +++G E A R +EL
Sbjct: 739 HKFLIGKGGGKIRKVRDSTGARVIFP------AAEDKDQDLI--TIIGKEDAVREAQKEL 790
Query: 69 TPLIFCFEYPLMGS---TPNANSPFV--------QIIQEAYNVQVMFRNRPKLQPTLVMV 117
LI + + S P + FV +I +E V V F R Q V +
Sbjct: 791 EALIQNLDNVVEDSMLVDPKHHRHFVIRRGQVLREIAEEYGGVMVSF-PRSGTQSDKVTL 849
Query: 118 KGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQT 177
KG + VE K+ ++IE + + V + I + H + GP ++ I
Sbjct: 850 KGAKDCVEAAKKRIQEIIEDL------EAQVTLECAIPQKFHRSVMGPKGSRIQQITRDF 903
Query: 178 GAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSSVRPRRRLLLI 229
QI FP+ + + + V N D R+ PRR ++I
Sbjct: 904 SVQIKFPDREENAV---HSTEPVVQENGDEAGEGREAKDCDPGSPRRCDIII 952
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 86/194 (44%), Gaps = 17/194 (8%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLER 60
+++++ + H H+IG+ G I ++ ++ V P ++EKSN + I G G+++
Sbjct: 438 VEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPP-----DSEKSNLIRIEGDPQGVQQ 492
Query: 61 ARYRVRELTPLI-------FCFEYPLMGSTPNANSPFVQIIQEAYNVQVMFRNRPKLQPT 113
A+ + EL + E + ++ I++ + ++ P +
Sbjct: 493 AKRELLELASRMENERTKDLIIEQRFHRTIIGQKGERIREIRDKFPEVIINFPDPAQKSD 552
Query: 114 LVMVKGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTI 173
+V ++G + +VE+ TK ++ M L + S + + I Q H + G N+K I
Sbjct: 553 IVQLRGPKNEVEKC----TKYMQKMVADLV-ENSYSISVPIFKQFHKNIIGKGGANIKKI 607
Query: 174 MAQTGAQIVFPEAN 187
++ +I P N
Sbjct: 608 REESNTKIDLPAEN 621
Score = 37.7 bits (86), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 101/247 (40%), Gaps = 58/247 (23%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLER 60
++++V + H ++IG+ G I+K+M+E ++H P +S+ ++I G L+R
Sbjct: 975 IEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL-----QSDIIAITGLAANLDR 1029
Query: 61 ARY----RVRELTP-----------LIFCFEYPLMGSTPNANSPFVQIIQEAYNVQVMF- 104
A+ RV+EL L + + I+ ++V + F
Sbjct: 1030 AKAGLLERVKELQAEQEDRALRSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFP 1089
Query: 105 ----RNRPKLQPTLVMVKGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHP 160
N+P+ Q + + G EK+ E ++A +++ G L M+ E P H
Sbjct: 1090 DKDDGNQPQDQ---ITITGYEKNTEAARDAILRIV----GELEQ-----MVSEDVPLDHR 1137
Query: 161 IME---GPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSG-------------N 204
+ G ++ IM + I FP++ P + VTV+G N
Sbjct: 1138 VHARIIGARGKAIRKIMDEFKVDIRFPQSGAP-----DPNCVTVTGLPENVEEAIDHILN 1192
Query: 205 IDSVYLA 211
++ YLA
Sbjct: 1193 LEEEYLA 1199
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 66/168 (39%), Gaps = 19/168 (11%)
Query: 10 HSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERAR------- 62
H IIGR G I ++ E ++ FPD + + +Q++I G E AR
Sbjct: 1064 HPKIIGRKGAVITQIRLEHDVNIQFPDKDD--GNQPQDQITITGYEKNTEAARDAILRIV 1121
Query: 63 ----YRVRELTPLIFCFEYPLMGSTPNANSPFVQIIQEAYNVQVMFRNRPKLQPTLVMVK 118
V E PL ++G+ A ++ I + + V + F P V V
Sbjct: 1122 GELEQMVSEDVPLDHRVHARIIGARGKA----IRKIMDEFKVDIRFPQSGAPDPNCVTVT 1177
Query: 119 GCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPN 166
G ++VE + L E + + ++ + M+ P H + P+
Sbjct: 1178 GLPENVEEAIDHILNLEEEYLADVVDSEALQVYMK--PPAHEEAKAPS 1223
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/238 (16%), Positives = 92/238 (38%), Gaps = 35/238 (14%)
Query: 10 HSHIIGRGGLTIKKVMEETGCHVHFPDSNRSV----------NAEKSNQ----------- 48
H ++G G I+++ + + FPD + N +++ +
Sbjct: 885 HRSVMGPKGSRIQQITRDFSVQIKFPDREENAVHSTEPVVQENGDEAGEGREAKDCDPGS 944
Query: 49 ------VSIAGSLLGLERARYRVRELTPLIFCFEYP--LMGSTPNANSPFVQIIQEAYNV 100
+ I+G E A+ + L P+ E P L ++ + + + V
Sbjct: 945 PRRCDIIIISGRKEKCEAAKEALEALVPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEV 1004
Query: 101 QVMFRNRPKLQPTLVMVKGCEKDVERVKEATTKLIEHMCGSLANQT--SVIMMMEISPQH 158
+ P+LQ ++ + G +++R K + ++ + ++ S + + + P++
Sbjct: 1005 NIHV-PAPELQSDIIAITGLAANLDRAKAGLLERVKELQAEQEDRALRSFKLSVTVDPKY 1063
Query: 159 HPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLV 216
HP + G + I + I FP+ +D P + +T++G + AR ++
Sbjct: 1064 HPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQP---QDQITITGYEKNTEAARDAIL 1118
Score = 34.7 bits (78), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 39/229 (17%)
Query: 10 HSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELT 69
H +IG+ G ++ + +T + P + + SNQ+ I G+ G+E+AR+ V
Sbjct: 162 HRFVIGKNGEKLQDLELKTATKIQIPRPD-----DPSNQIKITGTKEGIEKARHEV---- 212
Query: 70 PLIFCFEYPLMG----STPNANSPFV---------QIIQEA---YNVQVMFRNRPKLQPT 113
L+ E A PF+ +I+QE N+ P + T
Sbjct: 213 -LLISAEQDKRAVERLEVEKAFHPFIAGPYNRLVGEIMQETGTRINIPP-----PSVNRT 266
Query: 114 LVMVKGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTI 173
++ G + E++ +A ++ + T++ +E+ H + GP +L+ I
Sbjct: 267 EIVFTG---EKEQLAQAVARIKKIYEEKKKKTTTI--AVEVKKSQHKYVIGPKGNSLQEI 321
Query: 174 MAQTGAQIVFPEANDPIIP--VLKKSSVTVSGNIDSVYLARQMLVVSSV 220
+ +TG + P +D I +L+ + + VY VSSV
Sbjct: 322 LERTGVSVEIP-PSDSISETVILRGEPEKLGQALTEVYAKANSFTVSSV 369
Score = 34.3 bits (77), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 9/151 (5%)
Query: 75 FEYPLMGSTPNANSPFVQIIQEAYNVQVMFRNRPKLQPTLVMVKGCEKDVERVKEATTKL 134
F PL + F + Q +++M R L+ +L +G V +A K
Sbjct: 80 FHVPLEERKYKDMNQFGEGEQAKICLEIMQRTGAHLELSLAKDQGLSIMVSGKLDAVMKA 139
Query: 135 IEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVL 194
+ + L Q S + I +HH + G N L+ + +T +I P +DP
Sbjct: 140 RKDIVARLQTQASATVA--IPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDP----- 192
Query: 195 KKSSVTVSGNIDSVYLAR-QMLVVSSVRPRR 224
+ + ++G + + AR ++L++S+ + +R
Sbjct: 193 -SNQIKITGTKEGIEKARHEVLLISAEQDKR 222
>sp|Q5R439|VIGLN_PONAB Vigilin OS=Pongo abelii GN=HDLBP PE=2 SV=1
Length = 1268
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 89/214 (41%), Gaps = 24/214 (11%)
Query: 10 HSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRV---- 65
H +IIG+GG IKK+ EE+ + P N + S + I G E AR R+
Sbjct: 593 HKNIIGKGGANIKKIREESNTKIDLPAENSN-----SETIIITGKRANCEAARSRILSIQ 647
Query: 66 ---RELTPLIFCFEYPLMGSTPNANSPFVQ-IIQEAYNVQVMFRNRPKLQPTLVMVKGCE 121
+ + L S ++ I++E V + F T+V ++G
Sbjct: 648 KDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVV-IRGPS 706
Query: 122 KDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQI 181
DVE+ K+ L E S + + P++H + G ++ + TGA++
Sbjct: 707 SDVEKAKKQLLHLAEE-----KQTKSFTVDIRAKPEYHKFLIGKGGGKIRKVRDSTGARV 761
Query: 182 VFPEANDPIIPVLKKSSVTVSGNIDSVYLARQML 215
+FP A D + +T+ G D+V A++ L
Sbjct: 762 IFPAAEDK-----DQDLITIIGKEDAVREAQKEL 790
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 96/232 (41%), Gaps = 30/232 (12%)
Query: 10 HSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERA-RYRVREL 68
H +IG+GG I+KV + TG V FP AE +Q I +++G E A R +EL
Sbjct: 739 HKFLIGKGGGKIRKVRDSTGARVIFP------AAEDKDQDLI--TIIGKEDAVREAQKEL 790
Query: 69 TPLIFCFEYPLMGS---TPNANSPFV--------QIIQEAYNVQVMFRNRPKLQPTLVMV 117
LI + + S P + FV +I +E V V F R Q V +
Sbjct: 791 EALIQNLDNVVEDSMLVDPKHHRHFVIRRGQVLREIAEEYGGVMVSF-PRSGTQSDKVTL 849
Query: 118 KGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQT 177
KG + VE K+ ++IE + + V + I + H + GP ++ I
Sbjct: 850 KGAKGCVEAAKKRIQEIIEDL------EAQVTLECAIPQKFHRSVMGPKGSRIQQITRDF 903
Query: 178 GAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSSVRPRRRLLLI 229
QI FP+ + PV + V N D R+ PRR ++I
Sbjct: 904 SVQIKFPDREEN--PV-HSTEPAVQENGDEAGEGREAKDSDPGSPRRCDIII 952
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 86/194 (44%), Gaps = 17/194 (8%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLER 60
+++++ + H H+IG+ G I ++ ++ V P ++EKSN + I G G+++
Sbjct: 438 VEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPP-----DSEKSNLIRIEGDPQGVQQ 492
Query: 61 ARYRVRELTPLI-------FCFEYPLMGSTPNANSPFVQIIQEAYNVQVMFRNRPKLQPT 113
A+ + EL + E + ++ I++ + ++ P +
Sbjct: 493 AKRELLELASRMENERTKDLIIEQRFHRTIIGQKGERIREIRDKFPEVIINFPDPAQKSD 552
Query: 114 LVMVKGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTI 173
+V ++G + +VE+ TK ++ M L + S + + I Q H + G N+K I
Sbjct: 553 IVQLRGPKNEVEKC----TKYMQKMVADLV-ENSYSISVPIFKQFHKNIIGKGGANIKKI 607
Query: 174 MAQTGAQIVFPEAN 187
++ +I P N
Sbjct: 608 REESNTKIDLPAEN 621
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 17/155 (10%)
Query: 10 HSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERAR------- 62
H IIGR G I ++ E ++ FPD + + +Q++I G E AR
Sbjct: 1064 HPKIIGRKGAVITQIRLEHDVNIQFPD--KGDGNQPQDQITITGYEKNTEAARDAILRIV 1121
Query: 63 ----YRVRELTPLIFCFEYPLMGSTPNANSPFVQIIQEAYNVQVMFRNRPKLQPTLVMVK 118
V E PL ++G+ A ++ I + + V + F P V V
Sbjct: 1122 GELEQMVSEDVPLDHRVHARIIGARGKA----IRKIMDEFKVDIRFPQSGAPDPNCVTVT 1177
Query: 119 GCEKDVERVKEATTKLIEHMCGSLANQTSVIMMME 153
G ++VE + L E + + ++ + M+
Sbjct: 1178 GLPENVEEAIDHILNLEEEYLADVVDSEALQVYMK 1212
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 95/238 (39%), Gaps = 58/238 (24%)
Query: 10 HSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARY----RV 65
H ++IG+ G I+K+M+E ++H P +S+ ++I G L+RA+ RV
Sbjct: 984 HRYVIGQKGSGIRKMMDEFEVNIHVPAPEL-----QSDIIAITGLAANLDRAKAGLLERV 1038
Query: 66 RELTP-----------LIFCFEYPLMGSTPNANSPFVQIIQEAYNVQVMF-----RNRPK 109
+EL L + + I+ ++V + F N+P+
Sbjct: 1039 KELQAEQEDRALRSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKGDGNQPQ 1098
Query: 110 LQPTLVMVKGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIME---GPN 166
Q + + G EK+ E ++A +++ G L M+ E P H + G
Sbjct: 1099 DQ---ITITGYEKNTEAARDAILRIV----GELEQ-----MVSEDVPLDHRVHARIIGAR 1146
Query: 167 AINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSG-------------NIDSVYLA 211
++ IM + I FP++ P + VTV+G N++ YLA
Sbjct: 1147 GKAIRKIMDEFKVDIRFPQSGAP-----DPNCVTVTGLPENVEEAIDHILNLEEEYLA 1199
Score = 34.3 bits (77), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 39/229 (17%)
Query: 10 HSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELT 69
H +IG+ G ++ + +T + P + + SNQ+ I G+ G+E+AR+ V
Sbjct: 162 HRFVIGKNGEKLQDLELKTATKIQIPRPD-----DPSNQIKITGTKEGIEKARHEV---- 212
Query: 70 PLIFCFEYPLMG----STPNANSPFV---------QIIQEA---YNVQVMFRNRPKLQPT 113
L+ E A PF+ +I+QE N+ P + T
Sbjct: 213 -LLISAEQDERAVERLEVEKAFHPFIAGPYNRLVGEIMQETGTRINIPP-----PSVNRT 266
Query: 114 LVMVKGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTI 173
++ G + E++ +A ++ + T++ +E+ H + GP +L+ I
Sbjct: 267 EIVFTG---EKEQLAQAVARIKKIYEEKKKKTTTI--AVEVKKSQHKYVIGPKGNSLQEI 321
Query: 174 MAQTGAQIVFPEANDPIIP--VLKKSSVTVSGNIDSVYLARQMLVVSSV 220
+ +TG + P +D I +L+ + + VY VSSV
Sbjct: 322 LERTGVSVEIP-PSDSISETVILRGEPEKLGQALTEVYAKANSFTVSSV 369
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/111 (18%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 108 PKLQPTLVMVKGCEKDVERVKEATTKLIEHMCGSLANQT--SVIMMMEISPQHHPIMEGP 165
P+LQ ++ + G +++R K + ++ + ++ S + + + P++HP + G
Sbjct: 1011 PELQSDIIAITGLAANLDRAKAGLLERVKELQAEQEDRALRSFKLSVTVDPKYHPKIIGR 1070
Query: 166 NAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLV 216
+ I + I FP+ D P + +T++G + AR ++
Sbjct: 1071 KGAVITQIRLEHDVNIQFPDKGDGNQP---QDQITITGYEKNTEAARDAIL 1118
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 9/151 (5%)
Query: 75 FEYPLMGSTPNANSPFVQIIQEAYNVQVMFRNRPKLQPTLVMVKGCEKDVERVKEATTKL 134
F PL + F + Q +++M R L+ +L +G V +A K
Sbjct: 80 FHVPLEERKYKDMNQFGEGEQAKICLEIMQRTGAHLELSLAKDQGLSIMVSGKLDAVMKA 139
Query: 135 IEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVL 194
+ + L Q S + I +HH + G N L+ + +T +I P +DP
Sbjct: 140 RKDIVARLQTQASATVA--IPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDP----- 192
Query: 195 KKSSVTVSGNIDSVYLAR-QMLVVSSVRPRR 224
+ + ++G + + AR ++L++S+ + R
Sbjct: 193 -SNQIKITGTKEGIEKARHEVLLISAEQDER 222
>sp|P81021|VIGLN_CHICK Vigilin OS=Gallus gallus GN=HDLBP PE=2 SV=1
Length = 1270
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 92/217 (42%), Gaps = 29/217 (13%)
Query: 10 HSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRV---- 65
H +IIG+GG IKK+ EE+ + P ++ Q+ G ++ R+R+
Sbjct: 592 HKNIIGKGGANIKKIREESNTKIDLPGREQATQ----RQLLSQGREQTVKLLRHRILAIQ 647
Query: 66 REL---TPLIFCFEYPLMGSTPNANSPFVQ-IIQEAYNVQVMFRNRPKLQPTLVMVKGCE 121
+EL T + L S A F++ I++E V + F T+ +
Sbjct: 648 KELANITEVEVSIPSKLHNSLIGAKGRFIRSIMEECGGVHIHFPTEGSGSATVTI----- 702
Query: 122 KDVERVKEATTKLIEHMCGSLANQ---TSVIMMMEISPQHHPIMEGPNAINLKTIMAQTG 178
R + T + C + A + S + + P++H + G N++ + TG
Sbjct: 703 ----RAQPRTWRKPRSSCCTWAEEKQTKSYTVDLRAKPEYHKFLIGKGGGNIRKVRDNTG 758
Query: 179 AQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQML 215
A+I+FP + D + +T+ G ++V A++ L
Sbjct: 759 ARIIFPTSEDK-----DQELITIMGTEEAVKEAQKEL 790
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 26/196 (13%)
Query: 10 HSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERA-RYRVREL 68
H +IG+GG I+KV + TG + FP S E +Q I +++G E A + +EL
Sbjct: 739 HKFLIGKGGGNIRKVRDNTGARIIFPTS------EDKDQELI--TIMGTEEAVKEAQKEL 790
Query: 69 TPLIFCFEYPLMGS---TPNANSPFV--------QIIQEAYNVQVMFRNRPKLQPTLVMV 117
LI + + S P + FV +I E V V Q V +
Sbjct: 791 EALIKNLDNVVEDSMVVDPKHHRHFVIRRGQVLREIADEYGGVMVRLPTVSGTQSDKVTL 850
Query: 118 KGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQT 177
KG + VE K+ ++IE + + V + I + H + GP ++ I
Sbjct: 851 KGAKDCVEAAKKRIQEIIEDL------EAQVTIECTIPQKFHRSIMGPKGSRIQQITRDY 904
Query: 178 GAQIVFPEANDPIIPV 193
G QI FP+ + PV
Sbjct: 905 GVQIKFPDREENPAPV 920
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 82/190 (43%), Gaps = 17/190 (8%)
Query: 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERA 61
+++V + H H+IG+ G I ++ + V P N EKSN + I G G+++A
Sbjct: 438 EINVDHKFHRHLIGKNGANINRIKDLYKVSVRIPPDN-----EKSNLIRIEGDPQGVQQA 492
Query: 62 RYRVRELTPLI-------FCFEYPLMGSTPNANSPFVQIIQEAYNVQVMFRNRPKLQPTL 114
+ + EL + E + ++ I+E + ++ P + +
Sbjct: 493 KKELLELASRMENERTKDLIIEQKFHRTIIGQKGERIREIREKFPEVIINFPDPAHKSDI 552
Query: 115 VMVKGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTIM 174
V ++G + +VE+ TK ++ M L + S + + I Q H + G N+K I
Sbjct: 553 VQLRGPKNEVEKC----TKYMQKMVADLV-ENSFSISVPIFKQFHKNIIGKGGANIKKIR 607
Query: 175 AQTGAQIVFP 184
++ +I P
Sbjct: 608 EESNTKIDLP 617
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 11/157 (7%)
Query: 10 HSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYR----V 65
H IIGR G I ++ E ++ FPD + A+ +Q++I G E AR V
Sbjct: 1066 HPKIIGRKGAVITQIRTEHEVNIQFPDKDDESQAQ--DQITITGYEKNAEAARDAIMKIV 1123
Query: 66 RELTPLI---FCFEYPLMGSTPNANSPFVQIIQEAYNVQVMFRNRPKLQPTLVMVKGCEK 122
EL ++ ++ + A ++ I + + V + F P V V G +
Sbjct: 1124 GELEQMVSEDVTLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPE 1183
Query: 123 DVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHH 159
+VE + L E + + + M + + P H
Sbjct: 1184 NVEEAIDHILNLEEEYLADVVDNEA--MQVYMKPSSH 1218
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 98/241 (40%), Gaps = 45/241 (18%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLER 60
++++V + H +IIG+ G I+K+M+E ++ P + + S+ ++I G L+R
Sbjct: 976 IEVEVPFDLHRYIIGQKGSGIRKMMDEFEVNIQVP----APELQSSDIITITGLAANLDR 1031
Query: 61 ARY----RVRELTP-----------LIFCFEYPLMGSTPNANSPFVQIIQEAYNVQVMF- 104
A+ RV+EL L + + I+ + V + F
Sbjct: 1032 AKAGLLERVKELQAEQEDRALRSFKLTVTVDPKYHPKIIGRKGAVITQIRTEHEVNIQFP 1091
Query: 105 -RNRPKLQPTLVMVKGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIME 163
++ + + G EK+ E ++A K++ G L S + ++ + H +
Sbjct: 1092 DKDDESQAQDQITITGYEKNAEAARDAIMKIV----GELEQMVSEDVTLD--HRVHARII 1145
Query: 164 GPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSG-------------NIDSVYL 210
G ++ IM + I FP++ P + VTV+G N++ YL
Sbjct: 1146 GARGKAIRKIMDEFKVDIRFPQSGAP-----DPNCVTVTGLPENVEEAIDHILNLEEEYL 1200
Query: 211 A 211
A
Sbjct: 1201 A 1201
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 26/38 (68%)
Query: 3 LDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRS 40
++V + H ++IGR G ++++++E+TG V P ++ S
Sbjct: 299 VEVKKSQHKYVIGRKGNSLQEILEKTGVSVEIPPTDSS 336
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 9/151 (5%)
Query: 75 FEYPLMGSTPNANSPFVQIIQEAYNVQVMFRNRPKLQPTLVMVKGCEKDVERVKEATTKL 134
F PL + F + Q + +M + L+ +L +G V EA K
Sbjct: 79 FHVPLEERKYKDMNQFGEGEQAKICLDIMQKTGAHLELSLAKDQGLSIMVSGKLEAVMKA 138
Query: 135 IEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVL 194
+ + L Q S + I +HH + G N L+ + +T +I P +DP
Sbjct: 139 RKEIVARLQTQASATVA--IPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDP----- 191
Query: 195 KKSSVTVSGNIDSVYLAR-QMLVVSSVRPRR 224
+ + ++G + + AR ++L++S+ + +R
Sbjct: 192 -SNQIKITGTKEGIEKARHEILLISAEQDKR 221
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/244 (19%), Positives = 98/244 (40%), Gaps = 46/244 (18%)
Query: 10 HSHIIGRGGLTIKKVMEETGCHVHFPD--SNRSVNAE----------------------- 44
H I+G G I+++ + G + FPD N + AE
Sbjct: 886 HRSIMGPKGSRIQQITRDYGVQIKFPDREENPAPVAEPALQENGEEGGEGKDGKDADPSS 945
Query: 45 --KSNQVSIAGSLLGLERARYRVRELTPLIFCFEYP------LMGSTPNANSPFVQIIQE 96
K + + I+G E A+ ++ L P+ E P ++G S +++ E
Sbjct: 946 PRKCDIIIISGRREKCEAAKEALQALVPVTIEVEVPFDLHRYIIG---QKGSGIRKMMDE 1002
Query: 97 -AYNVQVMFRNRPKLQPT-LVMVKGCEKDVERVKEATTKLIEHMCGSLANQT--SVIMMM 152
N+QV P+LQ + ++ + G +++R K + ++ + ++ S + +
Sbjct: 1003 FEVNIQVPA---PELQSSDIITITGLAANLDRAKAGLLERVKELQAEQEDRALRSFKLTV 1059
Query: 153 EISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLAR 212
+ P++HP + G + I + I FP+ +D + +T++G + AR
Sbjct: 1060 TVDPKYHPKIIGRKGAVITQIRTEHEVNIQFPDKDD---ESQAQDQITITGYEKNAEAAR 1116
Query: 213 QMLV 216
++
Sbjct: 1117 DAIM 1120
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 10 HSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRV 65
H +IG+ G ++ + +T + P + + SNQ+ I G+ G+E+AR+ +
Sbjct: 161 HRFVIGKNGEKLQDLELKTATKIQIPRPD-----DPSNQIKITGTKEGIEKARHEI 211
>sp|P06105|SC160_YEAST Protein SCP160 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SCP160 PE=1 SV=3
Length = 1222
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 83/188 (44%), Gaps = 18/188 (9%)
Query: 11 SHIIGRGGLTIKKVMEETGCHVHFP-DSNRSVNAEKSNQVSIAGSLLGLERAR-YRVREL 68
+ +IG G ++++ E+ C + P + N + + +K+ +V++ G L A+ Y E
Sbjct: 647 ARLIGNKGSNLQQIREKFACQIDIPNEENNNASKDKTVEVTLTGLEYNLTHAKKYLAAEA 706
Query: 69 TPLIFCFEYPLM------GSTPNANSPFVQIIQEAYNVQVMFRNRPKLQPTLVMVKGCEK 122
L+ GS + + +QE YNV F N P+ +V ++G +
Sbjct: 707 KKWADIITKELIVPVKFHGSLIGPHGTYRNRLQEKYNV---FINFPR-DNEIVTIRGPSR 762
Query: 123 DVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIV 182
V + E L++ + M++ + +H P + G N N+ I A+ G ++
Sbjct: 763 GVNKAHEELKALLDFEM-----ENGHKMVINVPAEHVPRIIGKNGDNINDIRAEYGVEMD 817
Query: 183 F-PEANDP 189
F ++ DP
Sbjct: 818 FLQKSTDP 825
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/228 (20%), Positives = 94/228 (41%), Gaps = 36/228 (15%)
Query: 13 IIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVS--IAGSLLGLERARYRVR---- 66
IIG+ G I + E G + F + A+++ +V I GS ++ A RV
Sbjct: 797 IIGKNGDNINDIRAEYGVEMDFLQKSTDPKAQETGEVELEITGSRQNIKDAAKRVESIVA 856
Query: 67 -------ELTPLIFCFEYPLMGSTPNANSPFVQIIQEAYNVQVMFRNRPKLQPTL----- 114
E+ + + ++GS +II +A ++ RN+ P
Sbjct: 857 EASDFVTEVLKIDHKYHKSIVGS---GGHILREIISKAGGEEI--RNKSVDIPNADSENK 911
Query: 115 -VMVKGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTI 173
+ V+G +K V++V E K+++ + SV ++I + + GP I + +
Sbjct: 912 DITVQGPQKFVKKVVEEINKIVKDA------ENSVTKTIDIPAERKGALIGPGGIVRRQL 965
Query: 174 MAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSSVR 221
++ + P +DP +T++G ++V A + ++ +R
Sbjct: 966 ESEFNINLFVPNKDDP------SGKITITGAPENVEKAEKKILNEIIR 1007
>sp|O59810|VGL1_SCHPO Vigilin 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vgl1 PE=1 SV=2
Length = 1291
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 77/186 (41%), Gaps = 22/186 (11%)
Query: 10 HSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKS--------NQVSIAGSLLGLERA 61
H +IG G ++++ E+ V FP + S N+ + ++V I G + A
Sbjct: 820 HRQLIGSNGKYVRRLEEKFSVRVRFPREDDSSNSTGNELMKPTSPDEVVIRGGKKSVAAA 879
Query: 62 RYRVRELTPLIFCFEYPLMGSTPNA--------NSPFVQIIQEAYNVQVMFRNRPKLQPT 113
+ + EL Y P+ N V+ I+ ++V++ + + T
Sbjct: 880 KQELLELYEYEKSIAYTSTIDIPSKAVSRVVGRNGSTVENIRTQFDVKIDIGDVSTEETT 939
Query: 114 LVMVKGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTI 173
V V+G + DVE + + + E + + V +++I ++H + GPN L+
Sbjct: 940 PVSVRGAKADVENAIKEISAIAEEV------KNLVEKVIKIDREYHRYLIGPNGSKLQNT 993
Query: 174 MAQTGA 179
+ + G
Sbjct: 994 IKECGG 999
>sp|Q7NY10|PNP_CHRVO Polyribonucleotide nucleotidyltransferase OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=pnp PE=3 SV=1
Length = 722
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 10/59 (16%)
Query: 12 HIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAG-SLLGLERARYRVRELT 69
+IG+GG TI+ + ++TGC +N E+ ++IA S G E A+ R+ E+T
Sbjct: 575 EVIGKGGETIRSITKDTGCE---------INIEEDGTITIASVSSEGAEAAKKRIEEIT 624
>sp|Q8IWZ3|ANKH1_HUMAN Ankyrin repeat and KH domain-containing protein 1 OS=Homo sapiens
GN=ANKHD1 PE=1 SV=1
Length = 2542
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERA 61
KL V + S I+GRGG I + + TG H+ D + N E+ ++I G G E
Sbjct: 1699 KLSVPASVVSRIMGRGGCNITAIQDVTGAHIDV-DKQKDKNGER--MITIRG---GTEST 1752
Query: 62 RYRVRELTPLI 72
RY V+ + LI
Sbjct: 1753 RYAVQLINALI 1763
>sp|B9MEL0|PNP_ACIET Polyribonucleotide nucleotidyltransferase OS=Acidovorax ebreus
(strain TPSY) GN=pnp PE=3 SV=1
Length = 727
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 10/58 (17%)
Query: 13 IIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLG-LERARYRVRELT 69
+IG+GG TI+ + +ETGC +N E+ ++IA + + A+ R+ E+T
Sbjct: 570 VIGKGGATIRALTDETGCQ---------INIEEDGTITIAATEAAKADEAKRRIEEIT 618
>sp|A1W4L8|PNP_ACISJ Polyribonucleotide nucleotidyltransferase OS=Acidovorax sp. (strain
JS42) GN=pnp PE=3 SV=1
Length = 727
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 10/58 (17%)
Query: 13 IIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLG-LERARYRVRELT 69
+IG+GG TI+ + +ETGC +N E+ ++IA + + A+ R+ E+T
Sbjct: 570 VIGKGGATIRALTDETGCQ---------INIEEDGTITIAATEAAKADEAKRRIEEIT 618
>sp|Q9UNW9|NOVA2_HUMAN RNA-binding protein Nova-2 OS=Homo sapiens GN=NOVA2 PE=1 SV=1
Length = 492
Score = 35.0 bits (79), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVN 42
KL V + IIG+GG T+K VME++G V +N
Sbjct: 134 KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGIN 174
>sp|B1XUJ5|PNP_POLNS Polyribonucleotide nucleotidyltransferase OS=Polynucleobacter
necessarius subsp. necessarius (strain STIR1) GN=pnp
PE=3 SV=1
Length = 722
Score = 34.3 bits (77), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 12 HIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELT 69
+IG+GG TI+ + +ETGC + D A S + G+ A+ R+ +T
Sbjct: 568 EVIGKGGATIQALTKETGCSIDIKDDGTVTIASTSAE--------GMAEAKARIEGIT 617
>sp|A4SXQ7|PNP_POLSQ Polyribonucleotide nucleotidyltransferase OS=Polynucleobacter
necessarius subsp. asymbioticus (strain DSM 18221 / CIP
109841 / QLW-P1DMWA-1) GN=pnp PE=3 SV=1
Length = 722
Score = 33.9 bits (76), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 12 HIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELT 69
+IG+GG TI+ + +ETGC + D A S + G+ A+ R+ +T
Sbjct: 568 EVIGKGGATIQALTKETGCSIDIKDDGTVTIASTSAE--------GMAEAKARIEGIT 617
>sp|Q0VSR7|PNP_ALCBS Polyribonucleotide nucleotidyltransferase OS=Alcanivorax
borkumensis (strain SK2 / ATCC 700651 / DSM 11573)
GN=pnp PE=3 SV=1
Length = 697
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 12 HIIGRGGLTIKKVMEETGCHVHFPDSN 38
+IG+GG TI+ + EETGC + D
Sbjct: 569 DVIGKGGATIRALTEETGCTIDIEDDG 595
>sp|A5D2S6|PNP_PELTS Polyribonucleotide nucleotidyltransferase OS=Pelotomaculum
thermopropionicum (strain DSM 13744 / JCM 10971 / SI)
GN=pnp PE=3 SV=1
Length = 734
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 13 IIGRGGLTIKKVMEETGCHVHFPDSNR----SVNAEKSNQ 48
+IG GG IKK++EETG + D R +V+ EK +
Sbjct: 579 VIGPGGKVIKKIVEETGAEIDIEDDGRVFIAAVDQEKGRK 618
>sp|P51513|NOVA1_HUMAN RNA-binding protein Nova-1 OS=Homo sapiens GN=NOVA1 PE=1 SV=1
Length = 510
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVN 42
+K+ V + IIG+GG T+K VME++G V +N
Sbjct: 177 VKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGIN 218
>sp|Q2SMK9|PNP_HAHCH Polyribonucleotide nucleotidyltransferase OS=Hahella chejuensis
(strain KCTC 2396) GN=pnp PE=3 SV=1
Length = 703
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 13 IIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELT 69
+IG+GG TI+ + E+TG + D N +V A S L + A YR+ E+T
Sbjct: 569 VIGKGGATIRSICEDTGASIDI-DDNGTVRI-------YAESKLAADEAIYRITEIT 617
>sp|Q65VJ3|MTLD_MANSM Mannitol-1-phosphate 5-dehydrogenase OS=Mannheimia
succiniciproducens (strain MBEL55E) GN=mtlD PE=3 SV=1
Length = 382
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 173 IMAQTGAQIVFPEANDPIIPVLK-KSSVTVSGNIDSVYLARQMLVVSSVRPRRRLLLITI 231
++A +G Q++F + ND +I +LK + S V DS+ ++ V+ V + +IT+
Sbjct: 19 LLADSGMQVIFADVNDSVIDLLKSRRSYGVKIVGDSINTVERVTQVTGVNSKDETAIITL 78
Query: 232 PNDI 235
N++
Sbjct: 79 FNEV 82
>sp|A4SG26|PNP_PROVI Polyribonucleotide nucleotidyltransferase OS=Prosthecochloris
vibrioformis (strain DSM 265) GN=pnp PE=3 SV=1
Length = 732
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 13 IIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQ 48
IIG+GG TI+ + EETG ++ D A SN+
Sbjct: 585 IIGKGGETIRSITEETGAEINIEDDGTVTIACSSNE 620
>sp|Q8UVD9|FUBP2_CHICK Far upstream element-binding protein 2 OS=Gallus gallus GN=KHSRP
PE=1 SV=1
Length = 769
Score = 33.1 bits (74), Expect = 1.8, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 13 IIGRGGLTIKKVMEETGCHVHF-PDSNRSVNAEKSNQVSIAGSLLGLERAR 62
IIGRGG I K+ +++GC V PDS VS+ GS +++A+
Sbjct: 223 IIGRGGEQINKIQQDSGCKVQISPDS----GGLPERSVSLTGSPEAVQKAK 269
>sp|Q3B2E2|PNP_PELLD Polyribonucleotide nucleotidyltransferase OS=Pelodictyon luteolum
(strain DSM 273) GN=pnp PE=3 SV=1
Length = 732
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 13 IIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIA 52
IIG+GG TI+ + EETG ++ D A SN+ + A
Sbjct: 585 IIGKGGETIRSITEETGAEINIEDDGTVTIACSSNEGTKA 624
>sp|Q9JKN6|NOVA1_MOUSE RNA-binding protein Nova-1 OS=Mus musculus GN=Nova1 PE=1 SV=2
Length = 507
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVN 42
+K+ V + IIG+GG T+K +ME++G V +N
Sbjct: 174 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGIN 215
>sp|Q2PFW9|NOVA1_MACFA RNA-binding protein Nova-1 OS=Macaca fascicularis GN=NOVA1 PE=2
SV=1
Length = 483
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVN 42
+K+ V + IIG+GG T+K +ME++G V +N
Sbjct: 150 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGIN 191
>sp|B8FR00|PNP_DESHD Polyribonucleotide nucleotidyltransferase OS=Desulfitobacterium
hafniense (strain DCB-2 / DSM 10664) GN=pnp PE=3 SV=1
Length = 723
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 12 HIIGRGGLTIKKVMEETGCHVHFPDSNR 39
+IG GG TIKK+++ETG + D R
Sbjct: 572 EVIGPGGKTIKKIIDETGVKIDIEDDGR 599
>sp|Q24UJ4|PNP_DESHY Polyribonucleotide nucleotidyltransferase OS=Desulfitobacterium
hafniense (strain Y51) GN=pnp PE=3 SV=1
Length = 727
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 12 HIIGRGGLTIKKVMEETGCHVHFPDSNR 39
+IG GG TIKK+++ETG + D R
Sbjct: 572 EVIGPGGKTIKKIIDETGVKIDIEDDGR 599
>sp|Q80WA4|NOVA1_RAT RNA-binding protein Nova-1 (Fragment) OS=Rattus norvegicus GN=Nova1
PE=2 SV=1
Length = 474
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVN 42
+K+ V + IIG+GG T+K +ME++G V +N
Sbjct: 149 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGIN 190
>sp|Q0AE53|PNP_NITEC Polyribonucleotide nucleotidyltransferase OS=Nitrosomonas eutropha
(strain C91) GN=pnp PE=3 SV=1
Length = 705
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 13 IIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELT 69
+IG+GG I+ + EETG + D A SN+ G E+A+ R+ +T
Sbjct: 568 VIGKGGAVIRALTEETGTTIDISDDGSVTIASISNE--------GGEQAKRRIENIT 616
>sp|A4J5W6|PNP_DESRM Polyribonucleotide nucleotidyltransferase OS=Desulfotomaculum
reducens (strain MI-1) GN=pnp PE=3 SV=1
Length = 740
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 13 IIGRGGLTIKKVMEETGCHVHFPDSNR----SVNAEKSNQ 48
IIG GG IKK++EETG + D R +V+ EK +
Sbjct: 578 IIGPGGKIIKKLVEETGADIDIEDDGRVFIAAVDREKGKR 617
>sp|Q21H65|PNP_SACD2 Polyribonucleotide nucleotidyltransferase OS=Saccharophagus
degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=pnp
PE=3 SV=1
Length = 722
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 13 IIGRGGLTIKKVMEETGCHVHFPDSNR-SVNAEKSNQVSIAGSLLGLERARYRVRELT 69
IIG+GG TI+ + EETG + D+ + A+ + G++ A R+ E+T
Sbjct: 580 IIGKGGATIRSITEETGASIDIDDNGTIKIYADDGD---------GMQAAIARIEEIT 628
>sp|A0LE14|PNP_MAGSM Polyribonucleotide nucleotidyltransferase OS=Magnetococcus sp.
(strain MC-1) GN=pnp PE=3 SV=1
Length = 701
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 12 HIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVS 50
+IG GG I+ + EETGC + D ++ S+Q S
Sbjct: 570 EVIGSGGKVIRSITEETGCAIDIEDDG-TIRIASSDQAS 607
>sp|Q609C6|PNP_METCA Polyribonucleotide nucleotidyltransferase OS=Methylococcus
capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath)
GN=pnp PE=3 SV=1
Length = 691
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 12 HIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELT 69
+IG+GG TI+ + EETG + D A Q GLE AR R+ ++T
Sbjct: 565 EVIGKGGATIRAITEETGTSIDISDDGVVKIASVDKQA-------GLE-ARRRIEDIT 614
>sp|Q92945|FUBP2_HUMAN Far upstream element-binding protein 2 OS=Homo sapiens GN=KHSRP
PE=1 SV=4
Length = 711
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 13 IIGRGGLTIKKVMEETGCHVHF-PDSNRSVNAEKSNQVSIAGSLLGLERAR 62
IIGRGG I K+ +++GC V PDS E+S VS+ G+ +++A+
Sbjct: 159 IIGRGGEQINKIQQDSGCKVQISPDSGGL--PERS--VSLTGAPESVQKAK 205
>sp|Q0AYI2|PNP_SYNWW Polyribonucleotide nucleotidyltransferase OS=Syntrophomonas wolfei
subsp. wolfei (strain Goettingen) GN=pnp PE=3 SV=1
Length = 703
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 12 HIIGRGGLTIKKVMEETGCHVHFPDSN 38
+IG GG TI K+++ETGC + D
Sbjct: 565 EVIGPGGKTIHKIVDETGCKIDIEDDG 591
>sp|Q2RJL9|PNP_MOOTA Polyribonucleotide nucleotidyltransferase OS=Moorella thermoacetica
(strain ATCC 39073) GN=pnp PE=3 SV=1
Length = 747
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 13 IIGRGGLTIKKVMEETGCHVHFPDSNR 39
IIG GG IKK++EETG + D R
Sbjct: 584 IIGPGGKIIKKIIEETGVEIDVEDDGR 610
>sp|Q99PF5|FUBP2_RAT Far upstream element-binding protein 2 OS=Rattus norvegicus
GN=Khsrp PE=1 SV=1
Length = 721
Score = 32.3 bits (72), Expect = 3.2, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 13 IIGRGGLTIKKVMEETGCHVHF-PDSNRSVNAEKSNQVSIAGSLLGLERAR 62
IIGRGG I K+ +++GC V PDS VS+ G+ +++A+
Sbjct: 160 IIGRGGEQINKIQQDSGCKVQISPDS----GGLPERSVSLTGAPESVQKAK 206
>sp|B0C1M5|PNP_ACAM1 Polyribonucleotide nucleotidyltransferase OS=Acaryochloris marina
(strain MBIC 11017) GN=pnp PE=3 SV=2
Length = 716
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 13 IIGRGGLTIKKVMEETGCHVHFPDSNR 39
IIG GG TIK + EETG + D R
Sbjct: 577 IIGPGGKTIKGITEETGAKIDIEDDGR 603
>sp|Q3U0V1|FUBP2_MOUSE Far upstream element-binding protein 2 OS=Mus musculus GN=Khsrp
PE=1 SV=2
Length = 748
Score = 32.0 bits (71), Expect = 3.4, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 13 IIGRGGLTIKKVMEETGCHVHF-PDSNRSVNAEKSNQVSIAGSLLGLERAR 62
IIGRGG I K+ +++GC V PDS VS+ G+ +++A+
Sbjct: 160 IIGRGGEQINKIQQDSGCKVQISPDS----GGLPERSVSLTGAPESVQKAK 206
>sp|B2SDK7|PNP_FRATM Polyribonucleotide nucleotidyltransferase OS=Francisella tularensis
subsp. mediasiatica (strain FSC147) GN=pnp PE=3 SV=1
Length = 693
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 13 IIGRGGLTIKKVMEETGCHVHFPDSN 38
++GRGG T+K ++E+TG + DS
Sbjct: 571 VVGRGGATVKGIVEKTGAQIDTSDSG 596
>sp|A4IZA6|PNP_FRATW Polyribonucleotide nucleotidyltransferase OS=Francisella tularensis
subsp. tularensis (strain WY96-3418) GN=pnp PE=3 SV=1
Length = 693
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 13 IIGRGGLTIKKVMEETGCHVHFPDSN 38
++GRGG T+K ++E+TG + DS
Sbjct: 571 VVGRGGATVKGIVEKTGAQIDTSDSG 596
>sp|A0Q5I9|PNP_FRATN Polyribonucleotide nucleotidyltransferase OS=Francisella tularensis
subsp. novicida (strain U112) GN=pnp PE=3 SV=1
Length = 693
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 13 IIGRGGLTIKKVMEETGCHVHFPDSN 38
++GRGG T+K ++E+TG + DS
Sbjct: 571 VVGRGGATVKGIVEKTGAQIDTSDSG 596
>sp|Q2A269|PNP_FRATH Polyribonucleotide nucleotidyltransferase OS=Francisella tularensis
subsp. holarctica (strain LVS) GN=pnp PE=3 SV=1
Length = 693
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 13 IIGRGGLTIKKVMEETGCHVHFPDSN 38
++GRGG T+K ++E+TG + DS
Sbjct: 571 VVGRGGATVKGIVEKTGAQIDTSDSG 596
>sp|A7NDP3|PNP_FRATF Polyribonucleotide nucleotidyltransferase OS=Francisella tularensis
subsp. holarctica (strain FTNF002-00 / FTA) GN=pnp PE=3
SV=1
Length = 693
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 13 IIGRGGLTIKKVMEETGCHVHFPDSN 38
++GRGG T+K ++E+TG + DS
Sbjct: 571 VVGRGGATVKGIVEKTGAQIDTSDSG 596
>sp|Q5NGX7|PNP_FRATT Polyribonucleotide nucleotidyltransferase OS=Francisella tularensis
subsp. tularensis (strain SCHU S4 / Schu 4) GN=pnp PE=3
SV=1
Length = 693
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 13 IIGRGGLTIKKVMEETGCHVHFPDSN 38
++GRGG T+K ++E+TG + DS
Sbjct: 571 VVGRGGATVKGIVEKTGAQIDTSDSG 596
>sp|Q0BKU1|PNP_FRATO Polyribonucleotide nucleotidyltransferase OS=Francisella tularensis
subsp. holarctica (strain OSU18) GN=pnp PE=3 SV=1
Length = 693
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 13 IIGRGGLTIKKVMEETGCHVHFPDSN 38
++GRGG T+K ++E+TG + DS
Sbjct: 571 VVGRGGATVKGIVEKTGAQIDTSDSG 596
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,374,841
Number of Sequences: 539616
Number of extensions: 2979448
Number of successful extensions: 8674
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 8473
Number of HSP's gapped (non-prelim): 186
length of query: 238
length of database: 191,569,459
effective HSP length: 114
effective length of query: 124
effective length of database: 130,053,235
effective search space: 16126601140
effective search space used: 16126601140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)