Query psy11278
Match_columns 238
No_of_seqs 129 out of 1454
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 22:46:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11278.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11278hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n89_A Defective in GERM LINE 100.0 1.2E-43 4E-48 304.5 16.7 231 1-236 32-272 (376)
2 3krm_A Insulin-like growth fac 99.9 3.4E-25 1.2E-29 172.0 12.3 151 1-220 5-155 (163)
3 2anr_A Neuro-oncological ventr 99.9 3.5E-25 1.2E-29 174.4 8.3 167 1-220 8-174 (178)
4 2jvz_A KH type-splicing, FAR u 99.9 2.1E-24 7E-29 167.8 11.6 154 2-219 5-158 (164)
5 2jzx_A Poly(RC)-binding protei 99.9 1.3E-24 4.4E-29 168.3 8.8 151 1-219 7-157 (160)
6 1j4w_A FUSE binding protein; s 99.9 1.2E-24 4.1E-29 170.8 7.9 170 1-219 5-174 (174)
7 2qnd_A FMR1 protein; KH domain 99.8 6.1E-19 2.1E-23 133.7 6.6 131 2-219 7-140 (144)
8 2e3u_A PH-DIM2P, hypothetical 99.7 2E-16 6.7E-21 127.3 9.4 150 2-221 37-191 (219)
9 1dtj_A RNA-binding neurooncolo 99.6 1.4E-15 4.7E-20 102.7 6.5 70 1-70 5-74 (76)
10 1vig_A Vigilin; RNA-binding pr 99.6 1.9E-15 6.6E-20 100.5 6.0 63 2-69 8-70 (71)
11 1vig_A Vigilin; RNA-binding pr 99.6 6E-15 2E-19 98.1 6.4 65 149-219 6-70 (71)
12 2axy_A Poly(RC)-binding protei 99.5 1.9E-15 6.5E-20 101.1 3.1 64 1-69 7-70 (73)
13 2dgr_A Ring finger and KH doma 99.5 3E-15 1E-19 102.3 4.0 62 2-69 13-74 (83)
14 3n89_A Defective in GERM LINE 99.5 1.7E-15 5.9E-20 130.1 3.4 139 1-139 188-340 (376)
15 2hh2_A KH-type splicing regula 99.5 1.4E-14 4.9E-19 104.0 7.4 72 1-72 9-80 (107)
16 1ec6_A RNA-binding protein NOV 99.5 5.3E-15 1.8E-19 102.4 4.2 70 1-70 5-74 (87)
17 2ctl_A Vigilin; K homology typ 99.5 1.8E-14 6.1E-19 101.6 6.9 68 1-70 19-86 (97)
18 2ctf_A Vigilin; K homology typ 99.5 3.3E-16 1.1E-20 111.4 -2.2 86 116-219 4-90 (102)
19 1zzk_A Heterogeneous nuclear r 99.5 1.7E-14 6E-19 98.7 6.3 68 148-219 7-74 (82)
20 1zzk_A Heterogeneous nuclear r 99.5 1.9E-14 6.4E-19 98.5 6.3 67 1-70 9-75 (82)
21 2cte_A Vigilin; K homology typ 99.5 1.3E-14 4.3E-19 101.9 5.5 64 2-70 20-83 (94)
22 1dtj_A RNA-binding neurooncolo 99.5 2.9E-14 9.9E-19 96.2 7.1 70 149-219 4-73 (76)
23 1wvn_A Poly(RC)-binding protei 99.5 1.5E-14 5E-19 99.0 5.3 69 1-72 8-76 (82)
24 2dgr_A Ring finger and KH doma 99.5 7.8E-15 2.7E-19 100.3 3.9 65 148-219 10-74 (83)
25 2p2r_A Poly(RC)-binding protei 99.5 7.9E-15 2.7E-19 98.9 3.7 66 2-70 8-73 (76)
26 2axy_A Poly(RC)-binding protei 99.5 9.8E-15 3.4E-19 97.6 4.0 66 148-219 5-70 (73)
27 2ctl_A Vigilin; K homology typ 99.5 3E-14 1E-18 100.4 6.5 69 148-219 17-85 (97)
28 2opv_A KHSRP protein; KH domai 99.5 3.2E-14 1.1E-18 98.0 6.5 68 2-70 17-84 (85)
29 2p2r_A Poly(RC)-binding protei 99.5 1.3E-14 4.6E-19 97.8 4.3 68 148-219 5-72 (76)
30 1wvn_A Poly(RC)-binding protei 99.5 2.8E-14 9.4E-19 97.7 5.7 70 148-221 6-75 (82)
31 2ctm_A Vigilin; K homology typ 99.5 4.4E-14 1.5E-18 99.1 6.5 65 2-70 20-84 (95)
32 2ctm_A Vigilin; K homology typ 99.5 5.2E-14 1.8E-18 98.8 6.6 67 148-219 17-83 (95)
33 2cte_A Vigilin; K homology typ 99.5 3.1E-14 1.1E-18 99.9 5.3 66 148-219 17-82 (94)
34 2ctk_A Vigilin; K homology typ 99.5 5.2E-14 1.8E-18 100.4 5.5 64 2-70 20-83 (104)
35 1x4n_A FAR upstream element bi 99.5 5.1E-14 1.7E-18 98.4 4.8 71 147-221 14-84 (92)
36 1j5k_A Heterogeneous nuclear r 99.4 3.8E-14 1.3E-18 98.5 3.9 66 2-70 17-82 (89)
37 1j5k_A Heterogeneous nuclear r 99.4 4.6E-14 1.6E-18 98.0 3.9 69 147-219 13-81 (89)
38 1x4m_A FAR upstream element bi 99.4 5.5E-14 1.9E-18 98.6 4.3 69 2-71 18-86 (94)
39 1x4n_A FAR upstream element bi 99.4 6.4E-14 2.2E-18 97.9 4.6 66 2-70 18-83 (92)
40 1ec6_A RNA-binding protein NOV 99.4 6.2E-14 2.1E-18 97.0 4.2 70 149-219 4-73 (87)
41 2ctk_A Vigilin; K homology typ 99.4 1.1E-13 3.6E-18 98.8 5.5 68 146-219 15-82 (104)
42 2hh3_A KH-type splicing regula 99.4 1.1E-13 3.7E-18 99.0 5.4 68 1-71 13-80 (106)
43 2hh2_A KH-type splicing regula 99.4 2E-13 6.9E-18 98.0 6.8 72 150-222 9-80 (107)
44 2ctf_A Vigilin; K homology typ 99.4 2.4E-13 8.1E-18 96.6 6.2 61 2-70 30-91 (102)
45 1we8_A Tudor and KH domain con 99.4 1.9E-13 6.4E-18 97.7 5.7 68 2-70 18-85 (104)
46 1tua_A Hypothetical protein AP 99.4 1.8E-13 6.2E-18 107.5 6.1 121 2-136 7-159 (191)
47 2opv_A KHSRP protein; KH domai 99.4 3.5E-13 1.2E-17 92.7 6.4 70 148-219 14-83 (85)
48 2hh3_A KH-type splicing regula 99.4 2.1E-13 7.1E-18 97.6 5.4 66 150-219 13-78 (106)
49 1x4m_A FAR upstream element bi 99.4 2.1E-13 7.1E-18 95.6 5.2 72 148-221 15-86 (94)
50 1we8_A Tudor and KH domain con 99.4 4.8E-13 1.6E-17 95.6 7.1 73 145-219 12-84 (104)
51 2ctj_A Vigilin; K homology typ 99.4 2E-13 6.9E-18 95.6 4.7 71 141-219 12-83 (95)
52 2ctj_A Vigilin; K homology typ 99.4 2.4E-13 8.2E-18 95.2 5.1 64 2-70 20-84 (95)
53 3krm_A Insulin-like growth fac 99.3 1.8E-12 6.3E-17 100.0 6.1 84 149-235 4-95 (163)
54 1j4w_A FUSE binding protein; s 99.3 2.3E-12 7.9E-17 100.5 5.5 67 2-68 107-173 (174)
55 2jzx_A Poly(RC)-binding protei 99.3 3.6E-12 1.2E-16 98.0 5.4 82 147-234 4-98 (160)
56 2jvz_A KH type-splicing, FAR u 99.2 1.3E-11 4.3E-16 95.3 7.0 71 149-221 3-73 (164)
57 2anr_A Neuro-oncological ventr 99.2 1.6E-11 5.5E-16 96.0 5.6 73 148-221 6-78 (178)
58 1tua_A Hypothetical protein AP 99.1 1.1E-10 3.7E-15 91.7 8.0 132 74-221 7-160 (191)
59 2qnd_A FMR1 protein; KH domain 99.1 2.6E-11 8.8E-16 91.6 4.2 68 2-69 70-140 (144)
60 2cpq_A FragIle X mental retard 99.1 2.6E-11 9E-16 83.4 3.4 61 2-70 18-80 (91)
61 2cpq_A FragIle X mental retard 99.0 2.3E-10 7.8E-15 78.8 2.5 66 147-221 14-81 (91)
62 1k1g_A SF1-BO isoform; splicin 98.8 6E-09 2.1E-13 77.0 5.6 70 2-71 10-99 (131)
63 2yqr_A KIAA0907 protein; struc 98.7 1.6E-08 5.5E-13 73.2 6.3 63 8-70 28-98 (119)
64 1k1g_A SF1-BO isoform; splicin 98.6 6.6E-08 2.3E-12 71.3 6.0 76 148-223 7-101 (131)
65 2e3u_A PH-DIM2P, hypothetical 98.4 1.5E-07 5.1E-12 75.5 4.4 52 9-70 139-190 (219)
66 2bl5_A MGC83862 protein, quaki 98.4 2.1E-07 7.3E-12 69.1 4.8 69 2-70 5-100 (140)
67 2yqr_A KIAA0907 protein; struc 98.4 4.8E-07 1.6E-11 65.5 6.3 72 148-219 12-97 (119)
68 3u1k_A Polyribonucleotide nucl 98.2 5.5E-07 1.9E-11 82.7 3.3 59 2-69 570-629 (630)
69 3v69_A Protein filia; RNA-bind 98.2 2.8E-06 9.6E-11 61.9 5.4 68 150-222 58-125 (140)
70 3u1k_A Polyribonucleotide nucl 98.1 3.7E-06 1.3E-10 77.2 5.7 85 125-219 537-629 (630)
71 2bl5_A MGC83862 protein, quaki 97.9 8.1E-06 2.8E-10 60.5 4.2 71 150-220 4-100 (140)
72 3v69_A Protein filia; RNA-bind 97.9 1.6E-05 5.6E-10 57.9 5.5 64 2-69 59-122 (140)
73 4aid_A Polyribonucleotide nucl 97.6 8.6E-06 2.9E-10 75.7 0.7 86 2-106 573-659 (726)
74 4aid_A Polyribonucleotide nucl 97.5 6.8E-05 2.3E-09 69.8 3.8 88 124-221 539-634 (726)
75 3cdi_A Polynucleotide phosphor 95.6 0.0022 7.4E-08 59.9 0.0 59 2-69 563-622 (723)
76 3cdi_A Polynucleotide phosphor 95.2 0.0076 2.6E-07 56.3 2.5 85 125-219 530-622 (723)
77 1e3p_A Guanosine pentaphosphat 95.0 0.0011 3.6E-08 62.3 -3.9 59 2-69 601-660 (757)
78 1e3p_A Guanosine pentaphosphat 93.9 0.0051 1.7E-07 57.7 -2.1 85 125-219 569-660 (757)
79 2cxc_A NUSA; transcription ter 92.4 0.043 1.5E-06 40.7 1.4 36 2-37 39-74 (144)
80 2cxc_A NUSA; transcription ter 85.4 0.33 1.1E-05 35.9 1.6 36 150-185 38-73 (144)
81 2asb_A Transcription elongatio 85.1 0.27 9.1E-06 39.7 1.1 37 2-38 187-223 (251)
82 2asb_A Transcription elongatio 77.3 0.72 2.4E-05 37.2 1.0 38 150-187 186-223 (251)
83 2pt7_G HP1451, hypothetical pr 76.8 0.61 2.1E-05 34.7 0.5 28 2-29 36-63 (152)
84 1hh2_P NUSA, N utilization sub 74.1 1.2 3.9E-05 37.8 1.5 36 150-185 305-340 (344)
85 1wh9_A 40S ribosomal protein S 72.2 0.92 3.2E-05 30.7 0.4 26 2-27 38-63 (92)
86 1k0r_A NUSA; two component arr 69.9 1.3 4.5E-05 37.7 1.0 38 150-187 309-346 (366)
87 4hhu_A OR280; engineered prote 54.5 53 0.0018 23.0 14.0 36 169-212 104-139 (170)
88 2pt7_G HP1451, hypothetical pr 50.3 2.9 0.0001 31.0 -0.3 32 150-181 35-66 (152)
89 1k0r_A NUSA; two component arr 49.4 4.6 0.00016 34.4 0.7 79 9-106 250-344 (366)
90 2ba0_A Archeal exosome RNA bin 46.9 20 0.00068 28.3 4.0 57 150-216 138-194 (229)
91 2ba0_A Archeal exosome RNA bin 45.3 32 0.0011 27.1 5.0 57 3-68 140-196 (229)
92 3j20_C 30S ribosomal protein S 44.3 7.2 0.00025 30.5 1.0 26 2-27 43-68 (210)
93 3u5c_D RP13, YS3, 40S ribosoma 43.6 8 0.00027 30.8 1.2 27 2-28 47-73 (240)
94 3iev_A GTP-binding protein ERA 43.6 6.9 0.00024 32.2 0.9 23 4-26 245-268 (308)
95 3gku_A Probable RNA-binding pr 42.8 3.3 0.00011 32.8 -1.1 32 3-34 96-127 (225)
96 2kl8_A OR15; structural genomi 42.2 35 0.0012 21.1 3.7 17 197-213 42-58 (85)
97 3eik_A Tata-box-binding protei 41.5 1.2E+02 0.0042 23.6 9.7 24 45-68 95-120 (218)
98 1ytb_A Protein (tata binding p 40.5 1.2E+02 0.0039 22.9 9.7 83 45-136 57-172 (180)
99 2xzm_C KH domain containing pr 39.8 8.7 0.0003 30.7 0.9 28 2-29 50-77 (243)
100 3bbn_C Ribosomal protein S3; s 39.1 9.1 0.00031 30.1 0.9 26 3-28 74-99 (218)
101 3iz6_B 40S ribosomal protein S 38.3 7.8 0.00027 30.7 0.4 26 3-28 48-73 (227)
102 2vqe_C 30S ribosomal protein S 37.2 11 0.00038 30.0 1.2 25 3-27 66-90 (239)
103 3r8n_C 30S ribosomal protein S 36.4 6.8 0.00023 30.5 -0.2 25 3-27 65-89 (206)
104 2z0s_A Probable exosome comple 35.0 83 0.0028 24.7 6.0 57 3-68 152-209 (235)
105 3i1m_C 30S ribosomal protein S 33.1 8.1 0.00028 30.7 -0.3 25 3-27 66-90 (233)
106 2zkq_c 40S ribosomal protein S 31.7 7.8 0.00027 31.0 -0.6 27 3-29 48-74 (243)
107 1wf3_A GTP-binding protein; GT 30.7 7 0.00024 32.1 -1.1 17 9-25 241-257 (301)
108 1rm1_A Tata-box binding protei 29.6 2.1E+02 0.0071 22.6 9.2 83 45-136 117-232 (240)
109 4hhu_A OR280; engineered prote 28.9 58 0.002 22.8 3.5 39 196-234 42-80 (170)
110 1hh2_P NUSA, N utilization sub 28.9 21 0.00072 30.1 1.6 79 9-106 246-340 (344)
111 3dhx_A Methionine import ATP-b 27.9 56 0.0019 22.1 3.4 52 18-69 35-89 (106)
112 3u5c_D RP13, YS3, 40S ribosoma 26.8 16 0.00055 29.1 0.4 28 150-177 46-73 (240)
113 2z0s_A Probable exosome comple 26.3 76 0.0026 24.9 4.4 58 150-217 150-208 (235)
114 2xzm_C KH domain containing pr 25.0 17 0.00057 29.1 0.2 28 150-177 49-76 (243)
115 3iz6_B 40S ribosomal protein S 22.8 17 0.00058 28.7 -0.1 27 150-176 46-72 (227)
116 3sbm_A DISD protein, DSZD; tra 22.7 24 0.00081 28.5 0.7 65 161-232 125-193 (281)
117 4e9j_A General secretion pathw 22.3 2.8E+02 0.0095 21.5 8.9 23 46-68 148-170 (246)
118 2ja9_A Exosome complex exonucl 20.2 1.2E+02 0.0041 22.6 4.2 56 3-67 95-152 (175)
No 1
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=100.00 E-value=1.2e-43 Score=304.51 Aligned_cols=231 Identities=20% Similarity=0.240 Sum_probs=187.5
Q ss_pred CEEEecCCccceeeccCC--ccHHHHHHHcCCEEEecCCC--CCCCCCCCCeEEEEeCHHHHHHHHHHHHhhCCceEEEe
Q psy11278 1 MKLDVSYTDHSHIIGRGG--LTIKKVMEETGCHVHFPDSN--RSVNAEKSNQVSIAGSLLGLERARYRVRELTPLIFCFE 76 (238)
Q Consensus 1 ~~i~ip~~~~g~IIGk~G--~~I~~I~~~t~~~I~i~~~~--~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~~~~~~~~ 76 (238)
++++||+.+|++||||+| +||++||++|||+|+||+.+ ..++...++.|+|+|.+++|++|+.+|+++.|....|+
T Consensus 32 l~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l~Pl~i~~e 111 (376)
T 3n89_A 32 LNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNCHFTVFMA 111 (376)
T ss_dssp EEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHSCEEEEEEE
T ss_pred EEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhcCCceEEEE
Confidence 478999999999999999 99999999999999999987 33344567899999999999999999999999999999
Q ss_pred ecCcCCCCCCCChHHHHHHHHhCceEEeeCCCCCC---CcEEEEEccccchHHHHHHHHHHHHHhhcc-ccccceEEEEE
Q psy11278 77 YPLMGSTPNANSPFVQIIQEAYNVQVMFRNRPKLQ---PTLVMVKGCEKDVERVKEATTKLIEHMCGS-LANQTSVIMMM 152 (238)
Q Consensus 77 ~p~~~~~~~~~g~~i~~i~~~~gv~I~~~~~~~~~---~~~v~I~G~~~~v~~a~~ai~~~~~~~~~~-~~~~~~~~~~v 152 (238)
+|.........+.+|.+ ++.|||+|.|++.++.. ++.|+|+|++++++.|++|+..+++++.+. ..+..+++.++
T Consensus 112 lp~~~i~~~~l~~~I~q-q~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~~nv~~akeA~~~Ll~~l~~~e~~~~~~~s~~v 190 (376)
T 3n89_A 112 LSKMKMPLHELQAHVRQ-NPIQNVEMSFVDAPEKNGIVTTYLRITAREKNQHELIEAAKRLNEILFRESPAPENNFTLHF 190 (376)
T ss_dssp CTTCSSCHHHHHHHHHH-CCCTTCEEEEEEEC-----CEEEEEEEEEGGGHHHHHHHHHHHHHHHCC--CCCSSCEEEEE
T ss_pred ccccccCcchhhhhhcc-ceeCceEEEeCCcccccCCCCCEEEEEcChhhHHHHHHHHHHHHHHHHhhhcccccceEEEE
Confidence 98754321111234444 45689999998765432 578999999999999999999999887665 33334678999
Q ss_pred EeCCCeeeEEecCCC--chHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhcCCCCceEEEEe
Q psy11278 153 EISPQHHPIMEGPNA--INLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSSVRPRRRLLLIT 230 (238)
Q Consensus 153 ~i~~~~~~~iIG~~G--~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~~p~~~~~~ 230 (238)
.|++.+|.+|||++| ..|++|+++|||+|.||+.++++....+...|+|+|++++|..|+++|+++| |++|.||
T Consensus 191 ~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~e~V~~Ark~I~~lL----Pv~l~Fd 266 (376)
T 3n89_A 191 TLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNIDNVLKARRYIMDLL----PISMCFN 266 (376)
T ss_dssp EEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCHHHHHHHHHHHHHTS----EEEEEEE
T ss_pred EeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCHHHHHHHHHHHHhhC----CEEEEEe
Confidence 999999999999998 5569999999999999987664332335789999999999999999999999 9999999
Q ss_pred ecCCcc
Q psy11278 231 IPNDII 236 (238)
Q Consensus 231 ~~~~~~ 236 (238)
+++++.
T Consensus 267 ~~~~d~ 272 (376)
T 3n89_A 267 IKNTDM 272 (376)
T ss_dssp EEGGGB
T ss_pred cCCccc
Confidence 999865
No 2
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.92 E-value=3.4e-25 Score=172.05 Aligned_cols=151 Identities=17% Similarity=0.191 Sum_probs=121.8
Q ss_pred CEEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhCCceEEEeecCc
Q psy11278 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELTPLIFCFEYPLM 80 (238)
Q Consensus 1 ~~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~p~~ 80 (238)
++|.||.+.+|.||||+|++|++|+++|||+|++++... +...++.|+|+|+++++..|+.+|.+++.+
T Consensus 5 ~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~--~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e--------- 73 (163)
T 3krm_A 5 VQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPET--PDSKVRMVIITGPPEAQFKAQGRIYGKLKE--------- 73 (163)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSS--TTCSEEEEEEEECHHHHHHHHHHHHHHHHH---------
T ss_pred EEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCC--CCCCceEEEEEcCHHHHHHHHHHHHHHHhc---------
Confidence 478999999999999999999999999999999987542 334568999999999999999999655221
Q ss_pred CCCCCCCChHHHHHHHHhCceEEeeCCCCCCCcEEEEEccccchHHHHHHHHHHHHHhhccccccceEEEEEEeCCCeee
Q psy11278 81 GSTPNANSPFVQIIQEAYNVQVMFRNRPKLQPTLVMVKGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHP 160 (238)
Q Consensus 81 ~~~~~~~g~~i~~i~~~~gv~I~~~~~~~~~~~~v~I~G~~~~v~~a~~ai~~~~~~~~~~~~~~~~~~~~v~i~~~~~~ 160 (238)
.+ +. .|. .. ..++.++.||..+++
T Consensus 74 -----------------~~----~~-~~~------------------------------~~----~~~~~~i~vp~~~~g 97 (163)
T 3krm_A 74 -----------------EN----FF-GPK------------------------------EE----VKLETHIRVPASAAG 97 (163)
T ss_dssp -----------------TT----SS-CSS------------------------------CC----CCEEEEEEEETTTHH
T ss_pred -----------------cc----cc-ccc------------------------------cC----CceEEEEEcChhhee
Confidence 10 00 010 01 124478999999999
Q ss_pred EEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhcC
Q psy11278 161 IMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSSV 220 (238)
Q Consensus 161 ~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~ 220 (238)
+|||++|++|++|+++|||+|.+++...++. .+.+.|+|+|++++|..|+.+|.+++.
T Consensus 98 ~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~--~~~~~v~I~G~~~~v~~A~~~I~~~i~ 155 (163)
T 3krm_A 98 RVIGKGGKTVNELQNLTAAEVVVPRDQTPDE--NDQVIVKIIGHFYASQMAQRKIRDILA 155 (163)
T ss_dssp HHHCGGGHHHHHHHHHHCCEEECCTTCCCCT--TSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred eEEcCCChHHHHHHHHhCCeEEECCCCCCCC--CCceEEEEEeCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987654432 134589999999999999999999883
No 3
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.92 E-value=3.5e-25 Score=174.44 Aligned_cols=167 Identities=21% Similarity=0.264 Sum_probs=123.6
Q ss_pred CEEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhCCceEEEeecCc
Q psy11278 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELTPLIFCFEYPLM 80 (238)
Q Consensus 1 ~~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~p~~ 80 (238)
+++.||.+.+|.||||+|++|++|+++|||+|++++..+..+...++.|+|+|++++|.+|+.+|.+++... |..
T Consensus 8 ~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~-----~~~ 82 (178)
T 2anr_A 8 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREM-----PQN 82 (178)
T ss_dssp EEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCC-----CCC
T ss_pred EEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhcc-----CCc
Confidence 478999999999999999999999999999999987654334456789999999999999999998875432 100
Q ss_pred CCCCCCCChHHHHHHHHhCceEEeeCCCCCCCcEEEEEccccchHHHHHHHHHHHHHhhccccccceEEEEEEeCCCeee
Q psy11278 81 GSTPNANSPFVQIIQEAYNVQVMFRNRPKLQPTLVMVKGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHP 160 (238)
Q Consensus 81 ~~~~~~~g~~i~~i~~~~gv~I~~~~~~~~~~~~v~I~G~~~~v~~a~~ai~~~~~~~~~~~~~~~~~~~~v~i~~~~~~ 160 (238)
.... ..+.+.++.... +... ..+..+.||..+++
T Consensus 83 ----~~~~------------------------~~~~~~~~~~~~----------------~~~~--~~~~~i~Vp~~~vg 116 (178)
T 2anr_A 83 ----VAKT------------------------EPVSILQPQTTV----------------NPDR--ANQVKIIVPNSTAG 116 (178)
T ss_dssp -------------------------------------------------------------CGG--GGEEEEEEEHHHHH
T ss_pred ----cccC------------------------CcccccCCccCC----------------CCCC--ceEEEEEEchhhee
Confidence 0000 000000100000 0001 12378999999999
Q ss_pred EEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhcC
Q psy11278 161 IMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSSV 220 (238)
Q Consensus 161 ~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~ 220 (238)
+|||++|++|++|+++|||+|.++...+. ....++.|+|+|++++|.+|+.+|.+++.
T Consensus 117 ~iIGkgG~~Ik~i~~~tga~I~i~~~~~~--~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 174 (178)
T 2anr_A 117 LIIGKGGATVKAIMEQSGAWVQLSQKPDG--INLQNRVVTVSGEPEQNRKAVELIIQKIQ 174 (178)
T ss_dssp HHHCGGGHHHHHHHHHSSCEEEECCCC------CCEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred eeECCCcHHHHHHHHHHCCEEEEeCCCCC--CCCCceEEEEEcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999875421 11246899999999999999999999984
No 4
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.91 E-value=2.1e-24 Score=167.76 Aligned_cols=154 Identities=17% Similarity=0.237 Sum_probs=120.8
Q ss_pred EEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhCCceEEEeecCcC
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELTPLIFCFEYPLMG 81 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~p~~~ 81 (238)
+|.||.+++|.||||+|++|++|+++|||+|++++... .+...++.|+|+|++++|.+|+.+|.+++.+..
T Consensus 5 ~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~-~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~-------- 75 (164)
T 2jvz_A 5 EIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGS-QNTNVDKPLRIIGDPYKVQQACEMVMDILRERD-------- 75 (164)
T ss_dssp EEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTT-SSSSSCEEEEEEECHHHHHHHHHHHHHHTTCSS--------
T ss_pred EEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCC-CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhcc--------
Confidence 78999999999999999999999999999999976432 122356799999999999999999998865431
Q ss_pred CCCCCCChHHHHHHHHhCceEEeeCCCCCCCcEEEEEccccchHHHHHHHHHHHHHhhccccccceEEEEEEeCCCeeeE
Q psy11278 82 STPNANSPFVQIIQEAYNVQVMFRNRPKLQPTLVMVKGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPI 161 (238)
Q Consensus 82 ~~~~~~g~~i~~i~~~~gv~I~~~~~~~~~~~~v~I~G~~~~v~~a~~ai~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~ 161 (238)
. .+ +.+.++. |.. . .++..+.||..++++
T Consensus 76 -~---~~---------------~~~~~~~--------~~~--------------------~----~~~~~i~vp~~~~g~ 104 (164)
T 2jvz_A 76 -Q---GG---------------FGDRNEY--------GSR--------------------I----GGGIDVPVPRHSVGV 104 (164)
T ss_dssp -S---CC---------------CSSCSSC--------TTS--------------------C----SSSBCCEEETTTHHH
T ss_pred -C---CC---------------CCCcccc--------CCC--------------------C----CceEEEEEChhhccc
Confidence 0 00 0000000 000 0 012567899999999
Q ss_pred EecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhc
Q psy11278 162 MEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSS 219 (238)
Q Consensus 162 iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l 219 (238)
|||++|.+|++|+++|||+|.+++..+.. .++.|+|+|+++++..|+.+|.+++
T Consensus 105 iIGk~G~~I~~i~~~tg~~I~i~~~~~~~----~~~~v~I~G~~~~v~~A~~~I~~~i 158 (164)
T 2jvz_A 105 VIGRSGEMIKKIQNDAGVRIQFKQDDGTG----PEKIAHIMGPPDRCEHAARIINDLL 158 (164)
T ss_dssp HHCSSSHHHHHHHHHTCCEEEECCCCTTS----SEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred cCCCCcHhHHHHHHHHCCeEEEeCCCCCC----CcEEEEEEcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999998754321 3689999999999999999999987
No 5
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.91 E-value=1.3e-24 Score=168.29 Aligned_cols=151 Identities=18% Similarity=0.258 Sum_probs=120.2
Q ss_pred CEEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhCCceEEEeecCc
Q psy11278 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELTPLIFCFEYPLM 80 (238)
Q Consensus 1 ~~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~p~~ 80 (238)
+++.||.+.+|.||||+|++|++|+++|||+|++++.+. .++.|+|+|++++|.+|+.+|.+.+.+. ++
T Consensus 7 ~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~-----~~r~v~I~G~~~~v~~A~~~I~~~i~e~----~~-- 75 (160)
T 2jzx_A 7 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNC-----PERIITLAGPTNAIFKAFAMIIDKLEED----IS-- 75 (160)
T ss_dssp EEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTT-----TEEEEEEEEEHHHHHHHHHHHHHHHHHH----HT--
T ss_pred EEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCCCC-----CceEEEEEeCHHHHHHHHHHHHHHHHhh----cc--
Confidence 478999999999999999999999999999999988543 4689999999999999999997552211 00
Q ss_pred CCCCCCCChHHHHHHHHhCceEEeeCCCCCCCcEEEEEccccchHHHHHHHHHHHHHhhccccccceEEEEEEeCCCeee
Q psy11278 81 GSTPNANSPFVQIIQEAYNVQVMFRNRPKLQPTLVMVKGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHP 160 (238)
Q Consensus 81 ~~~~~~~g~~i~~i~~~~gv~I~~~~~~~~~~~~v~I~G~~~~v~~a~~ai~~~~~~~~~~~~~~~~~~~~v~i~~~~~~ 160 (238)
. ..+.+. . . ....++.++.||..+++
T Consensus 76 ------------------~------~~~~~~--------~--------------------~--~~~~~~~~i~vp~~~~g 101 (160)
T 2jzx_A 76 ------------------S------SMTNST--------A--------------------A--SRPPVTLRLVVPASQCG 101 (160)
T ss_dssp ------------------S------CCCSSS--------C--------------------C--CCCSEEEEEEEEHHHHH
T ss_pred ------------------c------cCCCCc--------c--------------------C--CCCCEEEEEEEChhhee
Confidence 0 000000 0 0 00124588999999999
Q ss_pred EEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhc
Q psy11278 161 IMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSS 219 (238)
Q Consensus 161 ~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l 219 (238)
+|||++|.+|++|+++|||+|.++....++ .+++.|+|+|++++|.+|+.+|.+++
T Consensus 102 ~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~---~~~~~v~I~G~~~~v~~A~~~I~~~i 157 (160)
T 2jzx_A 102 SLIGKGGCKIKEIRESTGAQVQVAGDMLPN---STERAITIAGIPQSIIECVKQICVVM 157 (160)
T ss_dssp HHHCGGGHHHHHHHHHHSSEECCCCCCSTT---CCEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred eEECCCCHHHHHHHHHhCCeEEECCCCCCC---CCceEEEEEcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999998643332 24799999999999999999999876
No 6
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.91 E-value=1.2e-24 Score=170.75 Aligned_cols=170 Identities=18% Similarity=0.249 Sum_probs=120.1
Q ss_pred CEEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhCCceEEEeecCc
Q psy11278 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELTPLIFCFEYPLM 80 (238)
Q Consensus 1 ~~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~p~~ 80 (238)
++|.||.+.+|.||||+|++|++|+++|||+|+|++... ...++.|+|+|++++|.+|+.+|.+++.....- ++
T Consensus 5 ~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~---~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~--~~- 78 (174)
T 1j4w_A 5 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDG---TTPERIAQITGPPDRAQHAAEIITDLLRSVQAG--NP- 78 (174)
T ss_dssp EEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTT---SCSEEEEEEEECHHHHHHHHHHHHHHHHHHC-------
T ss_pred EEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCC---CCCccEEEEEeCHHHHHHHHHHHHHHHHhcccC--CC-
Confidence 478999999999999999999999999999999976432 224689999999999999999998775432100 00
Q ss_pred CCCCCCCChHHHHHHHHhCceEEeeCCCCCCCcEEEEEccccchHHHHHHHHHHHHHhhccccccceEEEEEEeCCCeee
Q psy11278 81 GSTPNANSPFVQIIQEAYNVQVMFRNRPKLQPTLVMVKGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHP 160 (238)
Q Consensus 81 ~~~~~~~g~~i~~i~~~~gv~I~~~~~~~~~~~~v~I~G~~~~v~~a~~ai~~~~~~~~~~~~~~~~~~~~v~i~~~~~~ 160 (238)
+ .++..+. .++ ++. .+.. ...... ..+.++.||..+++
T Consensus 79 ~-~~~p~~~-------~~~------------------~~~-~~~~-------------~~~~~~--~~~~~i~vp~~~~g 116 (174)
T 1j4w_A 79 G-GPGPGGR-------GRG------------------RGQ-GNWN-------------MGPPGG--LQEFNFIVPTGKTG 116 (174)
T ss_dssp -------------------------------------------------------------------CEEEEEEETTTHH
T ss_pred C-CCCCCCC-------CCC------------------CCC-Cccc-------------cCCCCC--cEEEEEEEChHHcC
Confidence 0 0000000 000 000 0000 000001 12378999999999
Q ss_pred EEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhc
Q psy11278 161 IMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSS 219 (238)
Q Consensus 161 ~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l 219 (238)
+|||++|.+|++|+++|||+|.+++...++ ....++.|+|+|++++|..|+.+|.+++
T Consensus 117 ~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~-~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 117 LIIGKGGETIKSISQQSGARIELQRNPPPN-ADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp HHHCGGGHHHHHHHHHHCCEEEEECCCTTT-SCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred eeECCCchHHHHHHHHHCCEEEECCCCCCC-CCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 999999999999999999999998754321 1124689999999999999999999875
No 7
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.76 E-value=6.1e-19 Score=133.68 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=99.1
Q ss_pred EEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEe-CHHHHHHHHHHHHhhCCceEEEeecCc
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAG-SLLGLERARYRVRELTPLIFCFEYPLM 80 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~~~~~~~~~~p~~ 80 (238)
++.||.+.+|.+||++|++|+.|++++| |++...++ +...+.+.| +|+.|..|+.++.
T Consensus 7 ~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~~-----~~~~~i~~~~~p~~v~~~~~~l~-------------- 65 (144)
T 2qnd_A 7 QFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLDE-----DTCTFHIYGEDQDAVKKARSFLE-------------- 65 (144)
T ss_dssp EEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEET-----TTTEEEEEESSHHHHHHHHHHHC--------------
T ss_pred EEEECCcceeeEECCChhHHHHHHHHHC--CeEeccCC-----CchheeeccCCHHHHHHHHHhhh--------------
Confidence 6899999999999999999999999999 55433221 223455554 5777777765330
Q ss_pred CCCCCCCChHHHHHHHHhCceEEeeCCCCCCCcEEEEEccccchHHHHHHHHHHHHHhhccccccceEEEEEEeCCCeee
Q psy11278 81 GSTPNANSPFVQIIQEAYNVQVMFRNRPKLQPTLVMVKGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHP 160 (238)
Q Consensus 81 ~~~~~~~g~~i~~i~~~~gv~I~~~~~~~~~~~~v~I~G~~~~v~~a~~ai~~~~~~~~~~~~~~~~~~~~v~i~~~~~~ 160 (238)
+. ..++.+|.++++
T Consensus 66 -----------------------~~-------------------------------------------e~~v~Vp~~~~g 79 (144)
T 2qnd_A 66 -----------------------FA-------------------------------------------EDVIQVPRNLVG 79 (144)
T ss_dssp -----------------------EE-------------------------------------------EEEEEEEGGGHH
T ss_pred -----------------------cc-------------------------------------------eEEEEECHHHcC
Confidence 00 046778999999
Q ss_pred EEecCCCchHHHHHHHhCC-eEEccCCCCCCCCCC-cceEEEEEcCHHHHHHHHHHHHhhc
Q psy11278 161 IMEGPNAINLKTIMAQTGA-QIVFPEANDPIIPVL-KKSSVTVSGNIDSVYLARQMLVVSS 219 (238)
Q Consensus 161 ~iIG~~G~~I~~I~~~tga-~I~~p~~~~~~~~~~-~~~~v~I~G~~~~v~~A~~~I~~~l 219 (238)
++|||+|.+|+.+++.||| +|.|+...+...+.. ....|+|+|++++|+.|+.+|+.+|
T Consensus 80 ~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l 140 (144)
T 2qnd_A 80 KVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHL 140 (144)
T ss_dssp HHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred eeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHH
Confidence 9999999999999999997 899986543321111 1246999999999999999999987
No 8
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.67 E-value=2e-16 Score=127.34 Aligned_cols=150 Identities=15% Similarity=0.158 Sum_probs=105.1
Q ss_pred EEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeC-----HHHHHHHHHHHHhhCCceEEEe
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGS-----LLGLERARYRVRELTPLIFCFE 76 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~-----~~~v~~A~~~I~~~~~~~~~~~ 76 (238)
++.||.+.++.|||++|++|+.|+++|||+|++.. +++.|+|.|+ ++++.+|+.+|..+.... +
T Consensus 37 ~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~--------~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~---~ 105 (219)
T 2e3u_A 37 YVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS--------ETGEVWITSTKETEDPLAVWKARDIVLAIGRGF---S 105 (219)
T ss_dssp EEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT--------TTCEEEEEECTTCCSHHHHHHHHHHHHHHHTTC---C
T ss_pred EEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc--------CCCEEEEecCCCCCCHHHHHHHHHHHHHHhccC---C
Confidence 68899999999999999999999999999999975 2468999875 799999999998874210 0
Q ss_pred ecCcCCCCCCCChHHHHHHHHhCceEEeeCCCCCCCcEEEEEccccchHHHHHHHHHHHHHhhccccccceEEEEEEeCC
Q psy11278 77 YPLMGSTPNANSPFVQIIQEAYNVQVMFRNRPKLQPTLVMVKGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISP 156 (238)
Q Consensus 77 ~p~~~~~~~~~g~~i~~i~~~~gv~I~~~~~~~~~~~~v~I~G~~~~v~~a~~ai~~~~~~~~~~~~~~~~~~~~v~i~~ 156 (238)
. .. |..+ +.++ ... ..+.|... +.. ... ...+
T Consensus 106 ~-e~-------g~~l--l~dd--~~~----------e~i~i~~~---~v~--------------~~~---------~~~~ 137 (219)
T 2e3u_A 106 P-ER-------AFRL--LNEG--EYL----------EIINLTDI---IIG--------------NEK---------NALP 137 (219)
T ss_dssp H-HH-------HGGG--GSTT--CEE----------EEEEGGGC---C-----------------------------CHH
T ss_pred c-cc-------ccee--ccCC--ccc----------eeEEcccc---ccc--------------CCc---------hhhh
Confidence 0 00 0000 0000 000 00100000 000 000 0011
Q ss_pred CeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhcCC
Q psy11278 157 QHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSSVR 221 (238)
Q Consensus 157 ~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~ 221 (238)
...|+|||++|.+|+.|++.|||+|.++. +.|+|.|++++++.|+.+|.+++..
T Consensus 138 r~~GriIGk~G~tik~ie~~Tg~~I~v~~-----------~~v~i~G~~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 138 RVRGRIIGRKGRTRQIIEEMSGASVSVYG-----------KTVAIIGNPIQIEIAKTAIEKLARG 191 (219)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHCCEEEEET-----------TEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred hhhheeECCCchHHHHHHHHhCceEEECC-----------eEEEEEeCHHHHHHHHHHHHHHHcC
Confidence 24678999999999999999999999963 4699999999999999999999954
No 9
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.60 E-value=1.4e-15 Score=102.74 Aligned_cols=70 Identities=21% Similarity=0.380 Sum_probs=61.7
Q ss_pred CEEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhCC
Q psy11278 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELTP 70 (238)
Q Consensus 1 ~~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~~ 70 (238)
+++.||.+.+|.||||+|++|++|+++|||+|++++.++..+...++.|+|+|+++++..|+.+|.+++.
T Consensus 5 ~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 5 VEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVT 74 (76)
T ss_dssp EEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC
T ss_pred EEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHh
Confidence 3689999999999999999999999999999999986543344456899999999999999999998764
No 10
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.58 E-value=1.9e-15 Score=100.50 Aligned_cols=63 Identities=27% Similarity=0.542 Sum_probs=57.8
Q ss_pred EEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhC
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELT 69 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~ 69 (238)
++.||.+.|+.|||++|++|++|+++|||+|+|++..+ .++.|+|+|+++++++|+.+|+++.
T Consensus 8 ~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~-----~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 8 EINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSE-----KSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp EEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCS-----SSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred EEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCCC-----cccEEEEEcCHHHHHHHHHHHHHHh
Confidence 68899999999999999999999999999999998543 4579999999999999999998874
No 11
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.56 E-value=6e-15 Score=98.11 Aligned_cols=65 Identities=17% Similarity=0.301 Sum_probs=60.2
Q ss_pred EEEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhc
Q psy11278 149 IMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSS 219 (238)
Q Consensus 149 ~~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l 219 (238)
+..+.||+.+|+.|||++|++|++|+++|||+|.||++.++ .+.|+|+|+++++.+|+.+|.+++
T Consensus 6 ~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~------~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 6 YVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEK------SNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp EEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCSS------SEEEEEEESSHHHHHHHHHHHHTC
T ss_pred EEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCCCc------ccEEEEEcCHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999999986643 589999999999999999999876
No 12
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.54 E-value=1.9e-15 Score=101.10 Aligned_cols=64 Identities=22% Similarity=0.362 Sum_probs=58.2
Q ss_pred CEEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhC
Q psy11278 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELT 69 (238)
Q Consensus 1 ~~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~ 69 (238)
+++.||.+.+|.||||+|++|++|+++|||+|++++.+. .++.|+|+|+++++..|+.+|.+++
T Consensus 7 ~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~-----~er~v~I~G~~~~v~~A~~~I~~~l 70 (73)
T 2axy_A 7 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNC-----PERIITLAGPTNAIFKAFAMIIDKL 70 (73)
T ss_dssp EEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSCC-----SEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred EEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecCCC-----CcEEEEEEeCHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999988532 4689999999999999999998764
No 13
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=3e-15 Score=102.35 Aligned_cols=62 Identities=23% Similarity=0.373 Sum_probs=56.9
Q ss_pred EEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhC
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELT 69 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~ 69 (238)
+|.||.+.+|+||||+|++|++|+++|||+|++++.+ +++.++|+|+++++++|+.+|.++.
T Consensus 13 ~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~------~~~~v~ItG~~e~v~~A~~~I~~~i 74 (83)
T 2dgr_A 13 QVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD------KEPVFAVTGMPENVDRAREEIEAHI 74 (83)
T ss_dssp EEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS------SCCEEEEEECTTTHHHHHHHHHHHH
T ss_pred EEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC------CCCeEEEEcCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999998743 3579999999999999999998763
No 14
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.54 E-value=1.7e-15 Score=130.07 Aligned_cols=139 Identities=12% Similarity=0.225 Sum_probs=102.1
Q ss_pred CEEEecCCccceeeccCCc--cHHHHHHHcCCEEEecCCCCCC-CCCCCCeEEEEeCHHHHHHHHHHHHhhCCceEEEee
Q psy11278 1 MKLDVSYTDHSHIIGRGGL--TIKKVMEETGCHVHFPDSNRSV-NAEKSNQVSIAGSLLGLERARYRVRELTPLIFCFEY 77 (238)
Q Consensus 1 ~~i~ip~~~~g~IIGk~G~--~I~~I~~~t~~~I~i~~~~~~~-~~~~~~~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~ 77 (238)
+++.||.++|+.|||++|+ .|++|+++|||+|+||+.++.. +..+...|+|+|+.++|..|++.|++++|....|++
T Consensus 188 ~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~e~V~~Ark~I~~lLPv~l~Fd~ 267 (376)
T 3n89_A 188 LHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNIDNVLKARRYIMDLLPISMCFNI 267 (376)
T ss_dssp EEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCHHHHHHHHHHHHHTSEEEEEEEE
T ss_pred EEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCHHHHHHHHHHHHhhCCEEEEEec
Confidence 3689999999999999995 4599999999999999865421 111346899999999999999999999999999999
Q ss_pred cCcCC--CCCCCChHHHHHHHHhCceEEeeCCCCCC---------CcEEEEEccccchHHHHHHHHHHHHHhh
Q psy11278 78 PLMGS--TPNANSPFVQIIQEAYNVQVMFRNRPKLQ---------PTLVMVKGCEKDVERVKEATTKLIEHMC 139 (238)
Q Consensus 78 p~~~~--~~~~~g~~i~~i~~~~gv~I~~~~~~~~~---------~~~v~I~G~~~~v~~a~~ai~~~~~~~~ 139 (238)
+.... +.......+..++++++|.+++.+.+..+ ...+++++.+.|..++.+|.+.++..-.
T Consensus 268 ~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~e~n~~~~y~~~~~~l~~~~ 340 (376)
T 3n89_A 268 KNTDMAEPSRVSDRNIHMIIDESGIILKMTPSVYEPADLLSGEVPLNCASLRSKEFNIKKLYTAYQKVLSKKF 340 (376)
T ss_dssp EGGGBC--------CBEEEECTTSCEEEEEEEEECCSSSSCCCEEEEEEEEEEEGGGHHHHHHHHHHHBCGGG
T ss_pred CCcccccccccchhHHHHHHHhcCeEEEEeecCCCchhhcccccccceEEEEEEeccHHHHHHHHHHHhCCcc
Confidence 85321 11111222344677889999886643222 1579999999999999999888876543
No 15
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=104.02 Aligned_cols=72 Identities=21% Similarity=0.284 Sum_probs=62.8
Q ss_pred CEEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhCCce
Q psy11278 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELTPLI 72 (238)
Q Consensus 1 ~~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~~~~ 72 (238)
++|.||.+.++.||||+|++|++|+++|||+|+|++..+..+...++.|+|+|++++|++|+.+|.+++.+.
T Consensus 9 ~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 9 MTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp EEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred EEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 378999999999999999999999999999999988654222234689999999999999999999998764
No 16
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.52 E-value=5.3e-15 Score=102.43 Aligned_cols=70 Identities=21% Similarity=0.380 Sum_probs=61.3
Q ss_pred CEEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhCC
Q psy11278 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELTP 70 (238)
Q Consensus 1 ~~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~~ 70 (238)
+++.||.+.+|.||||+|++|++|+++|||+|++++.++..++..++.|+|+|+++++..|+.+|.+++.
T Consensus 5 ~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~ 74 (87)
T 1ec6_A 5 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVT 74 (87)
T ss_dssp EEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred EEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHh
Confidence 3689999999999999999999999999999999986543344466899999999999999999987743
No 17
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.52 E-value=1.8e-14 Score=101.60 Aligned_cols=68 Identities=26% Similarity=0.449 Sum_probs=59.7
Q ss_pred CEEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhCC
Q psy11278 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELTP 70 (238)
Q Consensus 1 ~~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~~ 70 (238)
++|.||.+.|+.|||++|++|++|+++|||+|+|++..+ +...++.|+|+|+++++++|+.+|+.+..
T Consensus 19 ~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~--~~~~~~~V~I~G~~e~v~~A~~~I~~iv~ 86 (97)
T 2ctl_A 19 LSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD--GNQPQDQITITGYEKNTEAARDAILRIVG 86 (97)
T ss_dssp EEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT--CSSCSSEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC--CCCCccEEEEEeCHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999998653 22246899999999999999999987743
No 18
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.52 E-value=3.3e-16 Score=111.37 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=70.8
Q ss_pred EEEccccchHHHHHHHHHHHHHhhccccccceEEEEEEeCCCeeeEEecCCCchHHHHHHH-hCCeEEccCCCCCCCCCC
Q psy11278 116 MVKGCEKDVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQ-TGAQIVFPEANDPIIPVL 194 (238)
Q Consensus 116 ~I~G~~~~v~~a~~ai~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~iIG~~G~~I~~I~~~-tga~I~~p~~~~~~~~~~ 194 (238)
.|+|+++++.+|+..+.+++ +.. ++.++.+|+.||++|||++|++|++|+++ ++++|.||+.
T Consensus 4 ~i~G~~~~V~~A~~~i~~~~--------~~~-~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~~-------- 66 (102)
T 2ctf_A 4 GSSGEPEKLGQALTEVYAKA--------NSF-TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEG-------- 66 (102)
T ss_dssp CCCCCCCCCCCSCCCCCCCC--------CCC-EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECSS--------
T ss_pred ccCcCHHHHHHHHHHHHHHh--------cCe-EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCCC--------
Confidence 36788888887764432211 111 45899999999999999999999999997 5999999982
Q ss_pred cceEEEEEcCHHHHHHHHHHHHhhc
Q psy11278 195 KKSSVTVSGNIDSVYLARQMLVVSS 219 (238)
Q Consensus 195 ~~~~v~I~G~~~~v~~A~~~I~~~l 219 (238)
++.|+|+|++++|.+|+.+|+.++
T Consensus 67 -~~~ItI~G~~~~V~~a~~~I~~~v 90 (102)
T 2ctf_A 67 -EDKITLEGPTEDVSVAQEQIEGMV 90 (102)
T ss_dssp -SCEEEEEECHHHHHHHHHHHHHHH
T ss_pred -CCEEEEECCHHHHHHHHHHHHHHH
Confidence 368999999999999999999887
No 19
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.52 E-value=1.7e-14 Score=98.65 Aligned_cols=68 Identities=21% Similarity=0.263 Sum_probs=60.9
Q ss_pred EEEEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhc
Q psy11278 148 VIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSS 219 (238)
Q Consensus 148 ~~~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l 219 (238)
++.++.||..++++|||++|++|++|+++|||+|.+++.... ..++.|+|+|+++++.+|+.+|.+++
T Consensus 7 ~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~----~~~~~v~I~G~~~~v~~A~~~I~~~i 74 (82)
T 1zzk_A 7 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEG----SEDRIITITGTQDQIQNAQYLLQNSV 74 (82)
T ss_dssp EEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSC----SSEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCC----CCceEEEEEeCHHHHHHHHHHHHHHH
Confidence 558999999999999999999999999999999999864321 14689999999999999999999987
No 20
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.51 E-value=1.9e-14 Score=98.50 Aligned_cols=67 Identities=19% Similarity=0.412 Sum_probs=58.9
Q ss_pred CEEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhCC
Q psy11278 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELTP 70 (238)
Q Consensus 1 ~~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~~ 70 (238)
+++.||.+.+|.||||+|++|++|+++|||+|++++... ...++.|+|+|++++|++|+.+|.+++.
T Consensus 9 ~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 75 (82)
T 1zzk_A 9 TQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLE---GSEDRIITITGTQDQIQNAQYLLQNSVK 75 (82)
T ss_dssp EEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTS---CSSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred EEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCC---CCCceEEEEEeCHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999987432 2356899999999999999999987643
No 21
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.51 E-value=1.3e-14 Score=101.88 Aligned_cols=64 Identities=25% Similarity=0.489 Sum_probs=58.2
Q ss_pred EEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhCC
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELTP 70 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~~ 70 (238)
++.||.+.||.|||++|++|++|+++|||+|+|++.++ .++.|+|+|+++++++|+.+|++++.
T Consensus 20 ~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~-----~~~~V~I~G~~e~v~~A~~~I~~i~~ 83 (94)
T 2cte_A 20 TVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDD-----PSNQIKITGTKEGIEKARHEVLLISA 83 (94)
T ss_dssp EEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTS-----SCCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred EEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCCC-----CCCeEEEEECHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999999999999997543 35799999999999999999988754
No 22
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.51 E-value=2.9e-14 Score=96.16 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=61.2
Q ss_pred EEEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhc
Q psy11278 149 IMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSS 219 (238)
Q Consensus 149 ~~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l 219 (238)
+.++.||..++|+|||++|++|++|+++|||+|.+++..++. +....+.|+|+|+++++..|+.+|.+++
T Consensus 4 ~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~-~~~~~~~v~I~G~~~~v~~A~~~I~~~i 73 (76)
T 1dtj_A 4 LVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL-PGTRNRRVTITGSPAATQAAQYLISQRV 73 (76)
T ss_dssp EEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS-TTCCEEEEEEEESHHHHHHHHHHHHHHC
T ss_pred EEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCC-CCCceeEEEEEeCHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999754321 1124689999999999999999999987
No 23
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.51 E-value=1.5e-14 Score=99.05 Aligned_cols=69 Identities=22% Similarity=0.352 Sum_probs=59.9
Q ss_pred CEEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhCCce
Q psy11278 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELTPLI 72 (238)
Q Consensus 1 ~~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~~~~ 72 (238)
+++.||.+.+|.||||+|++|++|+++|||+|++++..+ ...++.|+|+|+++++.+|+.+|.+++.+.
T Consensus 8 ~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~---~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 8 HELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVE---GSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCT---TCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred EEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCC---CCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 368999999999999999999999999999999987432 235689999999999999999999987643
No 24
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=7.8e-15 Score=100.25 Aligned_cols=65 Identities=20% Similarity=0.293 Sum_probs=59.8
Q ss_pred EEEEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhc
Q psy11278 148 VIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSS 219 (238)
Q Consensus 148 ~~~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l 219 (238)
++.+|.||.+++++|||++|++|++|+++|||+|.+|..++ ++.|+|+|+++++++|+.+|.+++
T Consensus 10 ~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~-------~~~v~ItG~~e~v~~A~~~I~~~i 74 (83)
T 2dgr_A 10 TTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDK-------EPVFAVTGMPENVDRAREEIEAHI 74 (83)
T ss_dssp EEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSSS-------CCEEEEEECTTTHHHHHHHHHHHH
T ss_pred eEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCCC-------CCeEEEEcCHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999997543 478999999999999999999986
No 25
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.50 E-value=7.9e-15 Score=98.93 Aligned_cols=66 Identities=23% Similarity=0.388 Sum_probs=59.1
Q ss_pred EEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhCC
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELTP 70 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~~ 70 (238)
++.||.+.+|.||||+|++|++|+++|||+|++++.. +...++.|+|+|+++++..|+.+|.+++.
T Consensus 8 ~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~---~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 8 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV---EGSTDRQVTITGSAASISLAQYLINVRLS 73 (76)
T ss_dssp EEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCC---TTCSEEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred EEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCC---CCCCeEEEEEEeCHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999998743 23356899999999999999999988754
No 26
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.50 E-value=9.8e-15 Score=97.61 Aligned_cols=66 Identities=17% Similarity=0.294 Sum_probs=61.0
Q ss_pred EEEEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhc
Q psy11278 148 VIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSS 219 (238)
Q Consensus 148 ~~~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l 219 (238)
++..+.||++.+|.|||++|++|++|+++|||+|.+++... .++.|+|+|+++++.+|+.+|.++|
T Consensus 5 ~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~------~er~v~I~G~~~~v~~A~~~I~~~l 70 (73)
T 2axy_A 5 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNC------PERIITLAGPTNAIFKAFAMIIDKL 70 (73)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSCC------SEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecCCC------CcEEEEEEeCHHHHHHHHHHHHHHH
Confidence 55899999999999999999999999999999999997643 3689999999999999999999987
No 27
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.50 E-value=3e-14 Score=100.44 Aligned_cols=69 Identities=19% Similarity=0.350 Sum_probs=62.0
Q ss_pred EEEEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhc
Q psy11278 148 VIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSS 219 (238)
Q Consensus 148 ~~~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l 219 (238)
++..|.||+.+|+.|||++|++|++|+++|||+|.||+..+++ ...+.|+|+|+++++.+|+.+|..++
T Consensus 17 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~---~~~~~V~I~G~~e~v~~A~~~I~~iv 85 (97)
T 2ctl_A 17 FKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGN---QPQDQITITGYEKNTEAARDAILRIV 85 (97)
T ss_dssp CEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCS---SCSSEEEEESCHHHHHHHHHHHHHHH
T ss_pred eeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCC---CCccEEEEEeCHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999866432 13689999999999999999999887
No 28
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.50 E-value=3.2e-14 Score=98.00 Aligned_cols=68 Identities=21% Similarity=0.334 Sum_probs=59.1
Q ss_pred EEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhCC
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELTP 70 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~~ 70 (238)
++.||.+.+|.||||+|++|++|+++|||+|++++... .+...++.|+|+|++++++.|+.+|.+++.
T Consensus 17 ~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~-~~~~~er~v~I~G~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 17 EIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGS-QNTNVDKPLRIIGDPYKVQQACEMVMDILR 84 (85)
T ss_dssp EEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSC-SSTTSCEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred EEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCC-CCCCCceEEEEEeCHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999987432 123356789999999999999999988753
No 29
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.50 E-value=1.3e-14 Score=97.80 Aligned_cols=68 Identities=21% Similarity=0.261 Sum_probs=61.1
Q ss_pred EEEEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhc
Q psy11278 148 VIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSS 219 (238)
Q Consensus 148 ~~~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l 219 (238)
++.++.||..++|+|||++|++|++|+++|||+|.+++.... ..++.|+|+|+++++.+|+.+|.+++
T Consensus 5 ~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~----~~~~~v~I~G~~~~v~~A~~~I~~~i 72 (76)
T 2p2r_A 5 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEG----STDRQVTITGSAASISLAQYLINVRL 72 (76)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTT----CSEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCC----CCeEEEEEEeCHHHHHHHHHHHHHHH
Confidence 558999999999999999999999999999999999874221 14799999999999999999999987
No 30
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.49 E-value=2.8e-14 Score=97.66 Aligned_cols=70 Identities=20% Similarity=0.244 Sum_probs=61.7
Q ss_pred EEEEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhcCC
Q psy11278 148 VIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSSVR 221 (238)
Q Consensus 148 ~~~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~ 221 (238)
++.+|.||.+++++|||++|++|++|+++|||+|.+++.... ..++.|+|+|+++++.+|+.+|.+++..
T Consensus 6 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~----~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 75 (82)
T 1wvn_A 6 TTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEG----SSGRQVTITGSAASISLAQYLINARLSS 75 (82)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTT----CSEEEEEEEECHHHHHHHHHHHHHHTC-
T ss_pred EEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCC----CCceEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 458999999999999999999999999999999999874321 1478999999999999999999999843
No 31
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.49 E-value=4.4e-14 Score=99.13 Aligned_cols=65 Identities=28% Similarity=0.443 Sum_probs=58.1
Q ss_pred EEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhCC
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELTP 70 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~~ 70 (238)
++.||.+.|+.|||++|++|++|+++|||+|+|++..+. .++.|+|+|.+++|++|+.+|+.+..
T Consensus 20 ~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~----~~~~V~I~G~~e~v~~A~~~I~~i~~ 84 (95)
T 2ctm_A 20 DVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAP----DPNCVTVTGLPENVEEAIDHILNLEE 84 (95)
T ss_dssp EEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCS----CTTEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCCC----CCcEEEEEcCHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999875431 35799999999999999999988754
No 32
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.48 E-value=5.2e-14 Score=98.78 Aligned_cols=67 Identities=22% Similarity=0.314 Sum_probs=61.0
Q ss_pred EEEEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhc
Q psy11278 148 VIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSS 219 (238)
Q Consensus 148 ~~~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l 219 (238)
++..+.||+.+|+.|||++|++|++|+++|||+|.||+..+. ..+.|+|+|+++++++|+.+|..++
T Consensus 17 vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~-----~~~~V~I~G~~e~v~~A~~~I~~i~ 83 (95)
T 2ctm_A 17 VSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAP-----DPNCVTVTGLPENVEEAIDHILNLE 83 (95)
T ss_dssp CCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCS-----CTTEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCCC-----CCcEEEEEcCHHHHHHHHHHHHHHH
Confidence 448999999999999999999999999999999999986543 2578999999999999999999987
No 33
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.48 E-value=3.1e-14 Score=99.89 Aligned_cols=66 Identities=23% Similarity=0.451 Sum_probs=60.8
Q ss_pred EEEEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhc
Q psy11278 148 VIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSS 219 (238)
Q Consensus 148 ~~~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l 219 (238)
++..|.||+.+|++|||++|.+|++|+++|||+|.+|+..++ .+.|+|+|+++++.+|+.+|.+++
T Consensus 17 ~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~------~~~V~I~G~~e~v~~A~~~I~~i~ 82 (94)
T 2cte_A 17 ASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDP------SNQIKITGTKEGIEKARHEVLLIS 82 (94)
T ss_dssp EEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTSS------CCEEEEEECHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCCCC------CCeEEEEECHHHHHHHHHHHHHHh
Confidence 558999999999999999999999999999999999976543 378999999999999999999988
No 34
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.46 E-value=5.2e-14 Score=100.42 Aligned_cols=64 Identities=28% Similarity=0.504 Sum_probs=58.1
Q ss_pred EEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhCC
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELTP 70 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~~ 70 (238)
++.||.+.|+.|||++|++|++|+++|||+|+|++..+ .++.|+|+|+.+++++|+.+|..+..
T Consensus 20 ~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~-----~~~~V~I~G~~e~v~~A~~~I~~i~~ 83 (104)
T 2ctk_A 20 EVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL-----QSDIIAITGLAANLDRAKAGLLERVK 83 (104)
T ss_dssp EEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT-----TCCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred EEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCC-----CcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 68899999999999999999999999999999998543 34699999999999999999988754
No 35
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.45 E-value=5.1e-14 Score=98.40 Aligned_cols=71 Identities=14% Similarity=0.204 Sum_probs=62.8
Q ss_pred eEEEEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhcCC
Q psy11278 147 SVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSSVR 221 (238)
Q Consensus 147 ~~~~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~ 221 (238)
.++.+|.||..++++|||++|.+|++|+++|||+|.+++..+.. .++.|+|+|++++|.+|+.+|.+++..
T Consensus 14 ~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~----~~r~v~I~G~~e~v~~A~~~I~~~i~~ 84 (92)
T 1x4n_A 14 VMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGL----PERSCMLTGTPESVQSAKRLLDQIVEK 84 (92)
T ss_dssp CEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTC----SEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCC----CccEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 35689999999999999999999999999999999998754221 478999999999999999999999843
No 36
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.45 E-value=3.8e-14 Score=98.46 Aligned_cols=66 Identities=20% Similarity=0.423 Sum_probs=58.7
Q ss_pred EEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhCC
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELTP 70 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~~ 70 (238)
++.||.+.+|.||||+|++|++|+++|||+|++++.. +...++.|+|+|++++|++|+.+|.+++.
T Consensus 17 ~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~---~~~~~~~v~I~G~~e~v~~A~~~I~~~i~ 82 (89)
T 1j5k_A 17 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPL---EGSEDRIITITGTQDQIQNAQYLLQNSVK 82 (89)
T ss_dssp EEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCC---SSSSEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred EEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCC---CCCCccEEEEEcCHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999998743 23356899999999999999999987743
No 37
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.44 E-value=4.6e-14 Score=98.02 Aligned_cols=69 Identities=20% Similarity=0.251 Sum_probs=61.4
Q ss_pred eEEEEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhc
Q psy11278 147 SVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSS 219 (238)
Q Consensus 147 ~~~~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l 219 (238)
.++.++.||..+++.|||++|++|++|+++|||+|.+++.... ..++.|+|+|+++++.+|+.+|.+++
T Consensus 13 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~----~~~~~v~I~G~~e~v~~A~~~I~~~i 81 (89)
T 1j5k_A 13 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEG----SEDRIITITGTQDQIQNAQYLLQNSV 81 (89)
T ss_dssp EEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSS----SSEEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCC----CCccEEEEEcCHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999864211 14799999999999999999999987
No 38
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.44 E-value=5.5e-14 Score=98.64 Aligned_cols=69 Identities=22% Similarity=0.337 Sum_probs=60.4
Q ss_pred EEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhCCc
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELTPL 71 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~~~ 71 (238)
+|.||.+.++.||||+|++|++|+++|||+|+|++..... ...++.|+|+|++++|+.|+.+|.+++.+
T Consensus 18 ~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 18 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN-TGADKPLRITGDPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp EEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS-SCSCEEEEEEECTTTHHHHHHHHHHHHCC
T ss_pred EEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC-CCCceEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999998754321 22568999999999999999999988654
No 39
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.44 E-value=6.4e-14 Score=97.88 Aligned_cols=66 Identities=20% Similarity=0.402 Sum_probs=58.8
Q ss_pred EEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhCC
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELTP 70 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~~ 70 (238)
+|.||.+.+|.||||+|++|++|+++|||+|+|++..+ ...++.|+|+|++++|.+|+.+|.+++.
T Consensus 18 ~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~---g~~~r~v~I~G~~e~v~~A~~~I~~~i~ 83 (92)
T 1x4n_A 18 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSG---GLPERSCMLTGTPESVQSAKRLLDQIVE 83 (92)
T ss_dssp EEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCT---TCSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred EEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCC---CCCccEEEEEeCHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999987542 2246899999999999999999988754
No 40
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.44 E-value=6.2e-14 Score=96.99 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=60.9
Q ss_pred EEEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhc
Q psy11278 149 IMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSS 219 (238)
Q Consensus 149 ~~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l 219 (238)
+.+|.||..++|+|||++|++|++|+++|||+|.+++..++. +....+.|+|+|+++++..|+.+|.+++
T Consensus 4 t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-~g~~~r~v~I~G~~~~v~~A~~~I~~~i 73 (87)
T 1ec6_A 4 LVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL-PGTRNRRVTITGSPAATQAAQYLISQRV 73 (87)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS-TTSCEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCC-CCCCceEEEEEcCHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999754310 1124689999999999999999999987
No 41
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.43 E-value=1.1e-13 Score=98.82 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=62.0
Q ss_pred ceEEEEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhc
Q psy11278 146 TSVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSS 219 (238)
Q Consensus 146 ~~~~~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l 219 (238)
.+++..|.||+.+|+.|||++|++|++|+++|||+|.+|+..+. .+.|+|+|+++++.+|+.+|.+++
T Consensus 15 ap~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~------~~~V~I~G~~e~v~~A~~~I~~i~ 82 (104)
T 2ctk_A 15 VPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQ------SDIIAITGLAANLDRAKAGLLERV 82 (104)
T ss_dssp SCEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTT------CCEEEEEECHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCCC------cceEEEEcCHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999986542 469999999999999999999987
No 42
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=1.1e-13 Score=99.03 Aligned_cols=68 Identities=22% Similarity=0.344 Sum_probs=59.5
Q ss_pred CEEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhCCc
Q psy11278 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELTPL 71 (238)
Q Consensus 1 ~~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~~~ 71 (238)
++|.||.+.++.||||+|++|++|+++|+|+|+|++... ...++.|+|+|++++|++|+.+|.+++.+
T Consensus 13 ~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~---~~~er~V~I~G~~e~v~~A~~~I~~ii~~ 80 (106)
T 2hh3_A 13 IDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG---TGPEKIAHIMGPPDRCEHAARIINDLLQS 80 (106)
T ss_dssp EEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCS---SSSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred EEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCC---CCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 378999999999999999999999999999999986432 22457999999999999999999988654
No 43
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=2e-13 Score=97.98 Aligned_cols=72 Identities=21% Similarity=0.216 Sum_probs=62.8
Q ss_pred EEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhcCCC
Q psy11278 150 MMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSSVRP 222 (238)
Q Consensus 150 ~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~ 222 (238)
.+|.||.+++++|||++|++|++|+++|||+|.+++..+++. ...++.|+|+|++++|.+|+.+|.+++...
T Consensus 9 ~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~-~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 9 MTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNG-DPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp EEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTC-CTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred EEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCC-CCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 789999999999999999999999999999999987653321 114689999999999999999999999654
No 44
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.42 E-value=2.4e-13 Score=96.56 Aligned_cols=61 Identities=16% Similarity=0.384 Sum_probs=55.6
Q ss_pred EEEecCCccceeeccCCccHHHHHHHc-CCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhCC
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEET-GCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELTP 70 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t-~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~~ 70 (238)
+|.||+.+|++|||++|++|++|++++ +++|+||+ .++.|+|+|+++.|++|+.+|..++.
T Consensus 30 ~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~--------~~~~ItI~G~~~~V~~a~~~I~~~v~ 91 (102)
T 2ctf_A 30 SVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE--------GEDKITLEGPTEDVSVAQEQIEGMVK 91 (102)
T ss_dssp EEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS--------SSCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred EEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC--------CCCEEEEECCHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999975 99999998 24699999999999999999987743
No 45
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.42 E-value=1.9e-13 Score=97.68 Aligned_cols=68 Identities=24% Similarity=0.365 Sum_probs=59.1
Q ss_pred EEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhCC
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELTP 70 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~~ 70 (238)
+|.||.+.+|.||||+|++|++|+++|||+|+|++..... ...++.|+|+|+.+++++|+.+|.+++.
T Consensus 18 ~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-~~~~~~V~I~G~~~~v~~A~~~I~~~i~ 85 (104)
T 1we8_A 18 QLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGT-LLLSRLIKISGTQKEVAAAKHLILEKVS 85 (104)
T ss_dssp EEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS-SSSEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred EEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCC-CCCcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999998754321 1246899999999999999999988753
No 46
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.42 E-value=1.8e-13 Score=107.46 Aligned_cols=121 Identities=17% Similarity=0.179 Sum_probs=101.6
Q ss_pred EEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEE-----eCHHHHHHHHHHHHhhC-------
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIA-----GSLLGLERARYRVRELT------- 69 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~-----G~~~~v~~A~~~I~~~~------- 69 (238)
++.||.+.+|.|||++|++++.|++++|++|++.. .++.|+|. |++..+.+|++.|..+.
T Consensus 7 ~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~--------~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~ 78 (191)
T 1tua_A 7 YVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT--------ENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEK 78 (191)
T ss_dssp EEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET--------TTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHH
T ss_pred EEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc--------CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHH
Confidence 68999999999999999999999999999999965 35788998 99999999999995542
Q ss_pred -----Cc---eEEEeecCc------------CCCCCCCChHHHHHHHHhCceEEeeCCCCCCCcEEEEEccccchHHHHH
Q psy11278 70 -----PL---IFCFEYPLM------------GSTPNANSPFVQIIQEAYNVQVMFRNRPKLQPTLVMVKGCEKDVERVKE 129 (238)
Q Consensus 70 -----~~---~~~~~~p~~------------~~~~~~~g~~i~~i~~~~gv~I~~~~~~~~~~~~v~I~G~~~~v~~a~~ 129 (238)
.. ...|+++.. +..+|++|.+++.|+..+|++|.++. ..+.|.|..+++..|+.
T Consensus 79 A~~Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~------~~v~i~G~~~~i~~Ar~ 152 (191)
T 1tua_A 79 AFRLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGE------YEVAIIGDYERAMAAKQ 152 (191)
T ss_dssp HGGGGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECS------SEEEEEEEHHHHHHHHH
T ss_pred hhhcccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcC------CEEEEEeChHHHHHHHH
Confidence 11 245555532 22468899999999999999999974 48999999999999998
Q ss_pred HHHHHHH
Q psy11278 130 ATTKLIE 136 (238)
Q Consensus 130 ai~~~~~ 136 (238)
++.+++.
T Consensus 153 ~i~~li~ 159 (191)
T 1tua_A 153 AIEMLAE 159 (191)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 8888774
No 47
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.41 E-value=3.5e-13 Score=92.74 Aligned_cols=70 Identities=11% Similarity=0.178 Sum_probs=61.0
Q ss_pred EEEEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhc
Q psy11278 148 VIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSS 219 (238)
Q Consensus 148 ~~~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l 219 (238)
....|.||+..++.|||++|++|++|+++|||+|.+++..... ...++.|+|+|+++++.+|+.+|.+++
T Consensus 14 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~--~~~er~v~I~G~~~~v~~A~~~I~~i~ 83 (85)
T 2opv_A 14 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN--TNVDKPLRIIGDPYKVQQACEMVMDIL 83 (85)
T ss_dssp EEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSS--TTSCEEEEEEECHHHHHHHHHHHHHHH
T ss_pred EEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCC--CCCceEEEEEeCHHHHHHHHHHHHHHh
Confidence 4478999999999999999999999999999999998754311 124678999999999999999999987
No 48
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.41 E-value=2.1e-13 Score=97.55 Aligned_cols=66 Identities=14% Similarity=0.175 Sum_probs=59.7
Q ss_pred EEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhc
Q psy11278 150 MMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSS 219 (238)
Q Consensus 150 ~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l 219 (238)
.+|.||.++++.|||++|++|++|+++|||+|.++++.... .++.|+|+|+++++++|+.+|++++
T Consensus 13 ~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~----~er~V~I~G~~e~v~~A~~~I~~ii 78 (106)
T 2hh3_A 13 IDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTG----PEKIAHIMGPPDRCEHAARIINDLL 78 (106)
T ss_dssp EEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSS----SEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCC----ceeEEEEEeCHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999998644221 3689999999999999999999988
No 49
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.40 E-value=2.1e-13 Score=95.65 Aligned_cols=72 Identities=13% Similarity=0.205 Sum_probs=63.1
Q ss_pred EEEEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhcCC
Q psy11278 148 VIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSSVR 221 (238)
Q Consensus 148 ~~~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~ 221 (238)
++.+|.||..++++|||++|++|++|+++|||+|.+++...+. ...++.|+|+|+++++.+|+.+|.+++..
T Consensus 15 ~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 15 AVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN--TGADKPLRITGDPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp EEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS--SCSCEEEEEEECTTTHHHHHHHHHHHHCC
T ss_pred EEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC--CCCceEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 5589999999999999999999999999999999998764321 11468999999999999999999999954
No 50
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.40 E-value=4.8e-13 Score=95.55 Aligned_cols=73 Identities=16% Similarity=0.295 Sum_probs=63.3
Q ss_pred cceEEEEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhc
Q psy11278 145 QTSVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSS 219 (238)
Q Consensus 145 ~~~~~~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l 219 (238)
..+.+..|.||..+++.|||++|++|++|+++|||+|.+++..+.. ...++.|+|+|+++++.+|+.+|.+++
T Consensus 12 ~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--~~~~~~V~I~G~~~~v~~A~~~I~~~i 84 (104)
T 1we8_A 12 NTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGT--LLLSRLIKISGTQKEVAAAKHLILEKV 84 (104)
T ss_dssp SCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS--SSSEEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCC--CCCcceEEEEcCHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999998754321 113689999999999999999999988
No 51
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.40 E-value=2e-13 Score=95.61 Aligned_cols=71 Identities=24% Similarity=0.363 Sum_probs=62.6
Q ss_pred cccccceEEEEEEeCCCeeeEEecCCCchHHHHHHHh-CCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhc
Q psy11278 141 SLANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQT-GAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSS 219 (238)
Q Consensus 141 ~~~~~~~~~~~v~i~~~~~~~iIG~~G~~I~~I~~~t-ga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l 219 (238)
++.+.. +..|.||+.+|+.|||++|.+|++|+++| ||+|.||++.+. .+.|+|.|+.+++.+|+++|++++
T Consensus 12 e~~~~v--t~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~------~~~V~I~G~~~~v~~A~~~I~~iv 83 (95)
T 2ctj_A 12 DLANIA--EVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSG------SDTVVIRGPSSDVEKAKKQLLHLA 83 (95)
T ss_dssp CCCSSC--CEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTT------CCEEEEESCHHHHHHHHHHHHHHH
T ss_pred HHhhcE--EEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCC------cceEEEEcCHHHHHHHHHHHHHHH
Confidence 344443 48899999999999999999999999999 999999986543 579999999999999999999987
No 52
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.40 E-value=2.4e-13 Score=95.23 Aligned_cols=64 Identities=31% Similarity=0.554 Sum_probs=58.2
Q ss_pred EEEecCCccceeeccCCccHHHHHHHc-CCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhCC
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEET-GCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELTP 70 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t-~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~~ 70 (238)
.|.||.++|+.|||++|++|++|+++| ||+|+||+... .++.|+|.|+.++|++|+.+|+++..
T Consensus 20 ~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~-----~~~~V~I~G~~~~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 20 EVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGS-----GSDTVVIRGPSSDVEKAKKQLLHLAE 84 (95)
T ss_dssp EEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTT-----TCCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCC-----CcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999 99999998543 45799999999999999999988754
No 53
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.32 E-value=1.8e-12 Score=99.99 Aligned_cols=84 Identities=15% Similarity=0.166 Sum_probs=70.9
Q ss_pred EEEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhcCCC------
Q psy11278 149 IMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSSVRP------ 222 (238)
Q Consensus 149 ~~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~------ 222 (238)
+..|.||..++|.|||++|++|++|+++|||+|.+++...++. .++.|+|+|+++++.+|+.+|.+++...
T Consensus 4 ~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~---~~r~v~I~G~~e~v~~A~~~I~~~~~e~~~~~~~ 80 (163)
T 3krm_A 4 MVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDS---KVRMVIITGPPEAQFKAQGRIYGKLKEENFFGPK 80 (163)
T ss_dssp EEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTC---SEEEEEEEECHHHHHHHHHHHHHHHHHTTSSCSS
T ss_pred EEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCC---CceEEEEEcCHHHHHHHHHHHHHHHhcccccccc
Confidence 4789999999999999999999999999999999988643322 4789999999999999999999887432
Q ss_pred --CceEEEEeecCCc
Q psy11278 223 --RRRLLLITIPNDI 235 (238)
Q Consensus 223 --~p~~~~~~~~~~~ 235 (238)
.+..+.+.+|++-
T Consensus 81 ~~~~~~~~i~vp~~~ 95 (163)
T 3krm_A 81 EEVKLETHIRVPASA 95 (163)
T ss_dssp CCCCEEEEEEEETTT
T ss_pred cCCceEEEEEcChhh
Confidence 3456788888763
No 54
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.29 E-value=2.3e-12 Score=100.53 Aligned_cols=67 Identities=22% Similarity=0.351 Sum_probs=59.0
Q ss_pred EEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhh
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVREL 68 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~ 68 (238)
++.||.+.+|.||||+|++|++|+++|||+|++++..+..+...++.|+|+|++++|..|+.+|.++
T Consensus 107 ~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~ 173 (174)
T 1j4w_A 107 NFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEK 173 (174)
T ss_dssp EEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEECCHHHHHHHHHHHHHH
T ss_pred EEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEECCHHHHHHHHHHHHHh
Confidence 6889999999999999999999999999999998864432233568999999999999999999876
No 55
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.27 E-value=3.6e-12 Score=98.03 Aligned_cols=82 Identities=17% Similarity=0.309 Sum_probs=71.2
Q ss_pred eEEEEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhcCC-----
Q psy11278 147 SVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSSVR----- 221 (238)
Q Consensus 147 ~~~~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~----- 221 (238)
+++.++.||..+++.|||++|++|++|+++|||+|.+++...+ ++.|+|+|+++++.+|+.+|.+.+..
T Consensus 4 ~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~------~r~v~I~G~~~~v~~A~~~I~~~i~e~~~~~ 77 (160)
T 2jzx_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCP------ERIITLAGPTNAIFKAFAMIIDKLEEDISSS 77 (160)
T ss_dssp EEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTTT------EEEEEEEEEHHHHHHHHHHHHHHHHHHHTSC
T ss_pred cEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCCCCC------ceEEEEEeCHHHHHHHHHHHHHHHHhhcccc
Confidence 4668999999999999999999999999999999999986433 68999999999999999999877632
Q ss_pred --------CCceEEEEeecCC
Q psy11278 222 --------PRRRLLLITIPND 234 (238)
Q Consensus 222 --------~~p~~~~~~~~~~ 234 (238)
+.|..+.+.+|++
T Consensus 78 ~~~~~~~~~~~~~~~i~vp~~ 98 (160)
T 2jzx_A 78 MTNSTAASRPPVTLRLVVPAS 98 (160)
T ss_dssp CCSSSCCCCCSEEEEEEEEHH
T ss_pred CCCCccCCCCCEEEEEEEChh
Confidence 2478888888865
No 56
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.24 E-value=1.3e-11 Score=95.28 Aligned_cols=71 Identities=11% Similarity=0.177 Sum_probs=61.1
Q ss_pred EEEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhcCC
Q psy11278 149 IMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSSVR 221 (238)
Q Consensus 149 ~~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~ 221 (238)
+.+|.||..++++|||++|++|++|+++|||+|.++.+... ....++.|+|+|++++|.+|+.+|.+++..
T Consensus 3 ~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~--~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e 73 (164)
T 2jvz_A 3 VQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQ--NTNVDKPLRIIGDPYKVQQACEMVMDILRE 73 (164)
T ss_dssp EEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTS--SSSSCEEEEEEECHHHHHHHHHHHHHHTTC
T ss_pred EEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCC--CCCCceEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999999764311 011367999999999999999999999964
No 57
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.19 E-value=1.6e-11 Score=96.05 Aligned_cols=73 Identities=14% Similarity=0.209 Sum_probs=62.5
Q ss_pred EEEEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhcCC
Q psy11278 148 VIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSSVR 221 (238)
Q Consensus 148 ~~~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~ 221 (238)
++.+|.||.+++|.|||++|++|++|+++|||+|.+++..+.. ....++.|+|+|+++++.+|+.+|.+++..
T Consensus 6 ~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~-~~~~er~v~I~G~~~~v~~A~~~I~~~~~~ 78 (178)
T 2anr_A 6 YFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFY-PGTTERVCLIQGTIEALNAVHGFIAEKIRE 78 (178)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBC-TTSSEEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCC-CCCCCceEEEEeCHHHHHHHHHHHHHHHhc
Confidence 4589999999999999999999999999999999998654210 112478999999999999999999998854
No 58
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.14 E-value=1.1e-10 Score=91.69 Aligned_cols=132 Identities=12% Similarity=0.143 Sum_probs=98.6
Q ss_pred EEeecC--cCCCCCCCChHHHHHHHHhCceEEeeCCCCCCCcEEEEE-----ccccchHHHHHHHHHHHHHhh----cc-
Q psy11278 74 CFEYPL--MGSTPNANSPFVQIIQEAYNVQVMFRNRPKLQPTLVMVK-----GCEKDVERVKEATTKLIEHMC----GS- 141 (238)
Q Consensus 74 ~~~~p~--~~~~~~~~g~~i~~i~~~~gv~I~~~~~~~~~~~~v~I~-----G~~~~v~~a~~ai~~~~~~~~----~~- 141 (238)
.+.+|. ++..+++.|..++.|++.+++++.+... .+.+.|+ |++..+.+|++.++.+..-+. -.
T Consensus 7 ~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~----~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~A~~L 82 (191)
T 1tua_A 7 YVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTE----NSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAFRL 82 (191)
T ss_dssp EEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETT----TTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHHGGG
T ss_pred EEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcC----CCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHhhhc
Confidence 344553 3335678899999999999999999753 4688888 777778888877766654221 11
Q ss_pred ccccceEEEEEEeCC----------CeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHH
Q psy11278 142 LANQTSVIMMMEISP----------QHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLA 211 (238)
Q Consensus 142 ~~~~~~~~~~v~i~~----------~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A 211 (238)
+.++ .+...+.++. ...|.|||++|.+++.|+..|||+|.+.. ..+.|.|++++++.|
T Consensus 83 l~Dd-~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~-----------~~v~i~G~~~~i~~A 150 (191)
T 1tua_A 83 LEED-QILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGE-----------YEVAIIGDYERAMAA 150 (191)
T ss_dssp GSTT-EEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECS-----------SEEEEEEEHHHHHHH
T ss_pred ccCc-ceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcC-----------CEEEEEeChHHHHHH
Confidence 1122 1223444542 24699999999999999999999999963 479999999999999
Q ss_pred HHHHHhhcCC
Q psy11278 212 RQMLVVSSVR 221 (238)
Q Consensus 212 ~~~I~~~l~~ 221 (238)
+..|+.++..
T Consensus 151 r~~i~~li~g 160 (191)
T 1tua_A 151 KQAIEMLAEG 160 (191)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 9999999865
No 59
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.14 E-value=2.6e-11 Score=91.59 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=56.6
Q ss_pred EEEecCCccceeeccCCccHHHHHHHcCC-EEEecCCCCCCCCCCCC--eEEEEeCHHHHHHHHHHHHhhC
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGC-HVHFPDSNRSVNAEKSN--QVSIAGSLLGLERARYRVRELT 69 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t~~-~I~i~~~~~~~~~~~~~--~v~I~G~~~~v~~A~~~I~~~~ 69 (238)
.+.||.+++|.+|||+|.||+.+++.||+ +|+|++.++......++ .|+|+|++++|+.|+.+|...+
T Consensus 70 ~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l 140 (144)
T 2qnd_A 70 VIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHL 140 (144)
T ss_dssp EEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred EEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999997 99998755432111223 5899999999999999998764
No 60
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.12 E-value=2.6e-11 Score=83.43 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=55.1
Q ss_pred EEEecCCccceeeccCCccHHHHHHHcCCE-EEecCCCCCCCCCCCCeEEEEe-CHHHHHHHHHHHHhhCC
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCH-VHFPDSNRSVNAEKSNQVSIAG-SLLGLERARYRVRELTP 70 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~-I~i~~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~~~ 70 (238)
.+.||.+.++.+||++|++|++|+++||++ |++.+ +++.|+|.| +.+++++|+.+|..+..
T Consensus 18 ~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e--------ddG~V~I~g~~~ea~~~A~~~I~~ie~ 80 (91)
T 2cpq_A 18 EFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE--------DTGTFRIYGESADAVKKARGFLEFVED 80 (91)
T ss_dssp EEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET--------TTTEEEEEESSHHHHHHHHHHHSCCCC
T ss_pred EEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc--------CCCEEEEEECCHHHHHHHHHHHHhhhe
Confidence 578999999999999999999999999998 99965 247999999 89999999999987644
No 61
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.95 E-value=2.3e-10 Score=78.76 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=58.5
Q ss_pred eEEEEEEeCCCeeeEEecCCCchHHHHHHHhCCe-EEccCCCCCCCCCCcceEEEEEc-CHHHHHHHHHHHHhhcCC
Q psy11278 147 SVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQ-IVFPEANDPIIPVLKKSSVTVSG-NIDSVYLARQMLVVSSVR 221 (238)
Q Consensus 147 ~~~~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~-I~~p~~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~l~~ 221 (238)
++...|.||++.++.+||++|.+|++|+++|||. |.+.++ ...|+|.| +.+++++|+.+|+.+-..
T Consensus 14 ~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~ed---------dG~V~I~g~~~ea~~~A~~~I~~ie~~ 81 (91)
T 2cpq_A 14 AFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDED---------TGTFRIYGESADAVKKARGFLEFVEDF 81 (91)
T ss_dssp SEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETT---------TTEEEEEESSHHHHHHHHHHHSCCCCC
T ss_pred ceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcC---------CCEEEEEECCHHHHHHHHHHHHhhheE
Confidence 3568999999999999999999999999999998 999642 36899999 799999999999887744
No 62
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.80 E-value=6e-09 Score=76.96 Aligned_cols=70 Identities=13% Similarity=0.224 Sum_probs=55.9
Q ss_pred EEEecCC------ccceeeccCCccHHHHHHHcCCEEEecCCCCCC-------------CCCCCCeEEEEe-CHHHHHHH
Q psy11278 2 KLDVSYT------DHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSV-------------NAEKSNQVSIAG-SLLGLERA 61 (238)
Q Consensus 2 ~i~ip~~------~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~-------------~~~~~~~v~I~G-~~~~v~~A 61 (238)
+|.||.+ ++|.|||++|.+||+|+++|||+|.|....... ..+++..|.|++ +.+.+.+|
T Consensus 10 kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~~~~A 89 (131)
T 1k1g_A 10 KVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKA 89 (131)
T ss_dssp EEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHHHHHH
T ss_pred EEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHHHHHH
Confidence 6788988 667999999999999999999999997632110 012356899999 68999999
Q ss_pred HHHHHhhCCc
Q psy11278 62 RYRVRELTPL 71 (238)
Q Consensus 62 ~~~I~~~~~~ 71 (238)
+++|+.++..
T Consensus 90 ~~~I~~ll~~ 99 (131)
T 1k1g_A 90 VEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 9999998643
No 63
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=1.6e-08 Score=73.24 Aligned_cols=63 Identities=19% Similarity=0.196 Sum_probs=49.3
Q ss_pred CccceeeccCCccHHHHHHHcCCEEEecCCCCC------CC-CCCCCeEEEEe-CHHHHHHHHHHHHhhCC
Q psy11278 8 TDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRS------VN-AEKSNQVSIAG-SLLGLERARYRVRELTP 70 (238)
Q Consensus 8 ~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~------~~-~~~~~~v~I~G-~~~~v~~A~~~I~~~~~ 70 (238)
+.++.|||++|.+|++|+++|||+|.|...... .. .+++..|.|++ +.+++++|+.+|++++.
T Consensus 28 n~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~~Ie~Ll~ 98 (119)
T 2yqr_A 28 NVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQ 98 (119)
T ss_dssp CHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 367899999999999999999999999743211 00 11345888887 68999999999988754
No 64
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.60 E-value=6.6e-08 Score=71.35 Aligned_cols=76 Identities=16% Similarity=0.111 Sum_probs=58.6
Q ss_pred EEEEEEeCCC------eeeEEecCCCchHHHHHHHhCCeEEccCCCCC------------CCCCCcceEEEEEc-CHHHH
Q psy11278 148 VIMMMEISPQ------HHPIMEGPNAINLKTIMAQTGAQIVFPEANDP------------IIPVLKKSSVTVSG-NIDSV 208 (238)
Q Consensus 148 ~~~~v~i~~~------~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~------------~~~~~~~~~v~I~G-~~~~v 208 (238)
++..|.||.. ++|.|||.+|.+|++|+++|||+|.+-....- .....+.-.|.|++ +.+.+
T Consensus 7 ~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~~ 86 (131)
T 1k1g_A 7 VSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENV 86 (131)
T ss_dssp EEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHHH
T ss_pred EEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHHH
Confidence 5578899888 77899999999999999999999998542110 00011246788999 59999
Q ss_pred HHHHHHHHhhcCCCC
Q psy11278 209 YLARQMLVVSSVRPR 223 (238)
Q Consensus 209 ~~A~~~I~~~l~~~~ 223 (238)
.+|..+|+.++....
T Consensus 87 ~~A~~~I~~ll~~~~ 101 (131)
T 1k1g_A 87 KKAVEQIRNILKQGI 101 (131)
T ss_dssp HHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999996533
No 65
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.43 E-value=1.5e-07 Score=75.50 Aligned_cols=52 Identities=29% Similarity=0.403 Sum_probs=47.9
Q ss_pred ccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhCC
Q psy11278 9 DHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELTP 70 (238)
Q Consensus 9 ~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~~ 70 (238)
..|.||||+|+|++.|++.|||+|.|++ +.|.|.|++++++.|+..|.+++.
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~----------~~v~i~G~~~~i~~A~~~i~~li~ 190 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYG----------KTVAIIGNPIQIEIAKTAIEKLAR 190 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEET----------TEEEEEECHHHHHHHHHHHHHHHT
T ss_pred hhheeECCCchHHHHHHHHhCceEEECC----------eEEEEEeCHHHHHHHHHHHHHHHc
Confidence 5788999999999999999999999964 589999999999999999998854
No 66
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.43 E-value=2.1e-07 Score=69.05 Aligned_cols=69 Identities=29% Similarity=0.358 Sum_probs=52.7
Q ss_pred EEEecCCc------cceeeccCCccHHHHHHHcCCEEEecCCCCCC-----------C----CCCCCeEEEEeC-HH---
Q psy11278 2 KLDVSYTD------HSHIIGRGGLTIKKVMEETGCHVHFPDSNRSV-----------N----AEKSNQVSIAGS-LL--- 56 (238)
Q Consensus 2 ~i~ip~~~------~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~-----------~----~~~~~~v~I~G~-~~--- 56 (238)
+|.||-+. +|.|||++|.++|+|+++|||+|.|......- + .++.-.|.|++. ++
T Consensus 5 Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~~~ 84 (140)
T 2bl5_A 5 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRA 84 (140)
T ss_dssp EEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHH
T ss_pred EEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchhhH
Confidence 56777655 78999999999999999999999998754211 0 112348889984 43
Q ss_pred --HHHHHHHHHHhhCC
Q psy11278 57 --GLERARYRVRELTP 70 (238)
Q Consensus 57 --~v~~A~~~I~~~~~ 70 (238)
.+.+|++.|++++.
T Consensus 85 ~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 85 ELKLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHCC
Confidence 79999999998853
No 67
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.41 E-value=4.8e-07 Score=65.47 Aligned_cols=72 Identities=15% Similarity=0.154 Sum_probs=52.6
Q ss_pred EEEEEEeCCC-------eeeEEecCCCchHHHHHHHhCCeEEccCCCCC------CCCCCcceEEEEEc-CHHHHHHHHH
Q psy11278 148 VIMMMEISPQ-------HHPIMEGPNAINLKTIMAQTGAQIVFPEANDP------IIPVLKKSSVTVSG-NIDSVYLARQ 213 (238)
Q Consensus 148 ~~~~v~i~~~-------~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~------~~~~~~~~~v~I~G-~~~~v~~A~~ 213 (238)
++..+.||-. +++.|||++|.+|++|+++|||+|.+-...+. .....+.-.|.|.+ +++++++|+.
T Consensus 12 ~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~ 91 (119)
T 2yqr_A 12 VQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKK 91 (119)
T ss_dssp EEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHH
T ss_pred EEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHH
Confidence 3455655543 67889999999999999999999999532110 00011234688887 5999999999
Q ss_pred HHHhhc
Q psy11278 214 MLVVSS 219 (238)
Q Consensus 214 ~I~~~l 219 (238)
+|++++
T Consensus 92 ~Ie~Ll 97 (119)
T 2yqr_A 92 LCENLL 97 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999998
No 68
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.21 E-value=5.5e-07 Score=82.73 Aligned_cols=59 Identities=24% Similarity=0.423 Sum_probs=51.9
Q ss_pred EEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeC-HHHHHHHHHHHHhhC
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGS-LLGLERARYRVRELT 69 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~~ 69 (238)
.+.||.+.++.+||++|++|+.|+++|||+|++.+ +..|.|.|. .+.+++|+++|..+.
T Consensus 570 ~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d---------~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 570 TVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD---------EETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS---------SSEEEEEESSHHHHHHHHHHTTC--
T ss_pred EEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC---------CcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999974 369999985 789999999997763
No 69
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=98.15 E-value=2.8e-06 Score=61.92 Aligned_cols=68 Identities=12% Similarity=0.041 Sum_probs=60.1
Q ss_pred EEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhcCCC
Q psy11278 150 MMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSSVRP 222 (238)
Q Consensus 150 ~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~ 222 (238)
..|.+.+..++.|||++|+.|+.|+..|+|.|.+..-+.. +...|+|.|++..-..|+.+|+.+...+
T Consensus 58 lVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~-----g~tEVtIfG~~~~Q~rak~MI~sLA~~h 125 (140)
T 3v69_A 58 KRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPE-----RRAEIWIFGPPPFRRDVDRMLTDLAHYC 125 (140)
T ss_dssp EEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCTT-----SCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCCC-----CcEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999765433 4789999999999999999999887443
No 70
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.06 E-value=3.7e-06 Score=77.22 Aligned_cols=85 Identities=18% Similarity=0.297 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHhhccc-------cccceEEEEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcce
Q psy11278 125 ERVKEATTKLIEHMCGSL-------ANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKS 197 (238)
Q Consensus 125 ~~a~~ai~~~~~~~~~~~-------~~~~~~~~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~ 197 (238)
+.|+++...+++.+.+.+ ....+....+.||+..++.+||++|++|++|.++|||.|.+.+ ..
T Consensus 537 ~~A~~g~~~I~~~m~~al~~~~~~~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d----------~G 606 (630)
T 3u1k_A 537 QQASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD----------EE 606 (630)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSSCCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS----------SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC----------Cc
Confidence 455555566665554322 2223456889999999999999999999999999999999863 25
Q ss_pred EEEEEcC-HHHHHHHHHHHHhhc
Q psy11278 198 SVTVSGN-IDSVYLARQMLVVSS 219 (238)
Q Consensus 198 ~v~I~G~-~~~v~~A~~~I~~~l 219 (238)
.|+|.|+ .++..+|+.+|.+++
T Consensus 607 ~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 607 TFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEEEEESSHHHHHHHHHHTTC--
T ss_pred EEEEEeCCHHHHHHHHHHHHHHh
Confidence 8999997 788999999998765
No 71
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.92 E-value=8.1e-06 Score=60.52 Aligned_cols=71 Identities=14% Similarity=0.104 Sum_probs=51.0
Q ss_pred EEEEeCC------CeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCC--------------CCCcceEEEEEcC-HH--
Q psy11278 150 MMMEISP------QHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPII--------------PVLKKSSVTVSGN-ID-- 206 (238)
Q Consensus 150 ~~v~i~~------~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~--------------~~~~~~~v~I~G~-~~-- 206 (238)
..|.||- +++|.|||.+|.++|+|+++|||+|.+-...+-.. ...+.=-|.|++. ++
T Consensus 4 ~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~~ 83 (140)
T 2bl5_A 4 EKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNR 83 (140)
T ss_dssp EEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHH
T ss_pred eEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchhh
Confidence 5566654 34889999999999999999999998865432100 0001126788884 43
Q ss_pred ---HHHHHHHHHHhhcC
Q psy11278 207 ---SVYLARQMLVVSSV 220 (238)
Q Consensus 207 ---~v~~A~~~I~~~l~ 220 (238)
.+.+|..+|+.+|.
T Consensus 84 ~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 84 AELKLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHCC
Confidence 79999999999993
No 72
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.91 E-value=1.6e-05 Score=57.90 Aligned_cols=64 Identities=14% Similarity=0.091 Sum_probs=55.2
Q ss_pred EEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhC
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELT 69 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~ 69 (238)
.+.+.....+.|+|++|+.|+.|+..|++.|++..-+.. ....|+|.|++..=.+|+.+|..+.
T Consensus 59 VF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~----g~tEVtIfG~~~~Q~rak~MI~sLA 122 (140)
T 3v69_A 59 RLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPE----RRAEIWIFGPPPFRRDVDRMLTDLA 122 (140)
T ss_dssp EEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCTT----SCEEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCCC----CcEEEEEECCHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999775321 3569999999999999999997663
No 73
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.65 E-value=8.6e-06 Score=75.75 Aligned_cols=86 Identities=20% Similarity=0.328 Sum_probs=11.6
Q ss_pred EEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEe-CHHHHHHHHHHHHhhCCceEEEeecCc
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAG-SLLGLERARYRVRELTPLIFCFEYPLM 80 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~~~~~~~~~~p~~ 80 (238)
.+.||.+.++.+||+||++|+.|+++||++|++.+ +..|.|.+ +.+.+++|+..|..+.... + .
T Consensus 573 ~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d---------dG~v~I~~~~~~~~~~A~~~i~~i~~~~---~---v 637 (726)
T 4aid_A 573 TINIPTDKIREVIGSGGKVIREIVATTGAKVDIND---------DGVVKVSASDGAKIKAAIDWIKSITDEA---E---V 637 (726)
T ss_dssp --------------------------------------------------CCSCHHHHHHHHHC----------------
T ss_pred EEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC---------CceEEEEeCCHHHHHHHHHHHHHHhhhh---c---C
Confidence 46799999999999999999999999999999964 35788876 5899999999998875422 1 1
Q ss_pred CCCCCCCChHHHHHHHHhCceEEeeC
Q psy11278 81 GSTPNANSPFVQIIQEAYNVQVMFRN 106 (238)
Q Consensus 81 ~~~~~~~g~~i~~i~~~~gv~I~~~~ 106 (238)
+- -+.| .+..+. .||+.+.+.+
T Consensus 638 G~--v~~G-~V~~I~-~fGaFVel~~ 659 (726)
T 4aid_A 638 GK--IYDG-KVVKVV-DFGAFVNFFG 659 (726)
T ss_dssp --------------------------
T ss_pred Cc--EEEE-EEEEEe-ccEEEEEECC
Confidence 10 0122 345554 6777777653
No 74
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.45 E-value=6.8e-05 Score=69.78 Aligned_cols=88 Identities=17% Similarity=0.231 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHhhcccc-------ccceEEEEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcc
Q psy11278 124 VERVKEATTKLIEHMCGSLA-------NQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKK 196 (238)
Q Consensus 124 v~~a~~ai~~~~~~~~~~~~-------~~~~~~~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~ 196 (238)
.+.|+++...+++.+.+.+. ...+....+.||+...+.+||++|.+|++|.++||+.|.+.+ .
T Consensus 539 L~~A~~g~~~I~~~m~~al~~~r~~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d----------d 608 (726)
T 4aid_A 539 LAQAKEGRAHILGEMNKAMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND----------D 608 (726)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCSSCCSSCCC------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC----------C
Confidence 34555566666665544332 122344788999999999999999999999999999998863 2
Q ss_pred eEEEEEcC-HHHHHHHHHHHHhhcCC
Q psy11278 197 SSVTVSGN-IDSVYLARQMLVVSSVR 221 (238)
Q Consensus 197 ~~v~I~G~-~~~v~~A~~~I~~~l~~ 221 (238)
..|.|.++ .++.++|+.+|..++..
T Consensus 609 G~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 609 GVVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp -----CCSCHHHHHHHHHC-------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 56788886 88999999999988743
No 75
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=95.56 E-value=0.0022 Score=59.92 Aligned_cols=59 Identities=29% Similarity=0.463 Sum_probs=0.0
Q ss_pred EEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEe-CHHHHHHHHHHHHhhC
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAG-SLLGLERARYRVRELT 69 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~~ 69 (238)
.+.||.+.++.+||++|.+|+.|.++||+.|++.+ +..|.|.+ +.+.+++|++.|..+.
T Consensus 563 ~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~---------dg~v~I~~~~~~~~~~a~~~i~~i~ 622 (723)
T 3cdi_A 563 TIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED---------DGTVKIAATDGEKAKHAIRRIEEIT 622 (723)
T ss_dssp ---------------------------------------------------------------------
T ss_pred EEEECHHHhcccccccceeeeeeehhhCceEEecC---------CccEEEecCCHHHHHHHHHHHHHHh
Confidence 46799999999999999999999999999998865 25677766 5678888888887664
No 76
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=95.23 E-value=0.0076 Score=56.29 Aligned_cols=85 Identities=14% Similarity=0.215 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhhcccc-------ccceEEEEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcce
Q psy11278 125 ERVKEATTKLIEHMCGSLA-------NQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKS 197 (238)
Q Consensus 125 ~~a~~ai~~~~~~~~~~~~-------~~~~~~~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~ 197 (238)
+.|+++...+++.+.+.+. ...+....+.||+...+.+||++|.+|+.|.+++|+.|.+.. ..
T Consensus 530 ~~A~~~~~~I~~~m~~al~~~~~~~~~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~----------dg 599 (723)
T 3cdi_A 530 NQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED----------DG 599 (723)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhccccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC----------Cc
Confidence 4455555555555443222 122344778899999999999999999999999999997764 14
Q ss_pred EEEEEcC-HHHHHHHHHHHHhhc
Q psy11278 198 SVTVSGN-IDSVYLARQMLVVSS 219 (238)
Q Consensus 198 ~v~I~G~-~~~v~~A~~~I~~~l 219 (238)
.+.|.+. .+...+|+.+|..+.
T Consensus 600 ~v~I~~~~~~~~~~a~~~i~~i~ 622 (723)
T 3cdi_A 600 TVKIAATDGEKAKHAIRRIEEIT 622 (723)
T ss_dssp -----------------------
T ss_pred cEEEecCCHHHHHHHHHHHHHHh
Confidence 5666664 667777887777665
No 77
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=95.03 E-value=0.0011 Score=62.27 Aligned_cols=59 Identities=19% Similarity=0.335 Sum_probs=19.7
Q ss_pred EEEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEe-CHHHHHHHHHHHHhhC
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAG-SLLGLERARYRVRELT 69 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~~ 69 (238)
.+.||.+.++.+||++|++|+.|.++||+.|++.+ ++.|.|++ +....++|++.|..+.
T Consensus 601 ~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~---------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 601 TVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED---------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CC------------------CTTCCCCCSCC-----------------CCCBSSHHHHCC---------
T ss_pred EEEEChHHeehcccccceeeehhhHhhCCEEEecC---------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 46799999999999999999999999999999974 25677766 5677778887776654
No 78
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=93.87 E-value=0.0051 Score=57.69 Aligned_cols=85 Identities=15% Similarity=0.263 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhhcccc------ccceEEEEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceE
Q psy11278 125 ERVKEATTKLIEHMCGSLA------NQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSS 198 (238)
Q Consensus 125 ~~a~~ai~~~~~~~~~~~~------~~~~~~~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~ 198 (238)
+.|+++...+++.+.+.+. ...+....+.||+...+.+||++|..|++|.+++|+.|.+.. ...
T Consensus 569 ~~A~~~~~~I~~~m~~al~~~~~~~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~----------dG~ 638 (757)
T 1e3p_A 569 KQARDARLHILDVMMEAIDTPDEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED----------DGT 638 (757)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCCCCTTSCBCCCC------------------CTTCCCCCSCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC----------Cce
Confidence 5555555556555433221 112333678899999999999999999999999999998864 145
Q ss_pred EEEEcC-HHHHHHHHHHHHhhc
Q psy11278 199 VTVSGN-IDSVYLARQMLVVSS 219 (238)
Q Consensus 199 v~I~G~-~~~v~~A~~~I~~~l 219 (238)
|.|.+. .+...+|+.+|..+.
T Consensus 639 v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 639 IYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp -CCCBSSHHHHCC---------
T ss_pred EEEecCCHHHHHHHHHHHHHhc
Confidence 777765 566666776766654
No 79
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=92.37 E-value=0.043 Score=40.65 Aligned_cols=36 Identities=31% Similarity=0.371 Sum_probs=32.5
Q ss_pred EEEecCCccceeeccCCccHHHHHHHcCCEEEecCC
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDS 37 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~ 37 (238)
.+.|+...+|..||++|++++.|++++|-+|++-.-
T Consensus 39 i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~ 74 (144)
T 2cxc_A 39 IFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEY 74 (144)
T ss_dssp EEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEEC
T ss_pred EEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEc
Confidence 467888999999999999999999999999998664
No 80
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=85.37 E-value=0.33 Score=35.88 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=32.4
Q ss_pred EEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccC
Q psy11278 150 MMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPE 185 (238)
Q Consensus 150 ~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~ 185 (238)
+-+.+++..+|..||++|++|+.++++.|-+|.+-.
T Consensus 38 ~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~ 73 (144)
T 2cxc_A 38 LIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVE 73 (144)
T ss_dssp EEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEE
T ss_pred EEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEE
Confidence 678888999999999999999999999999996644
No 81
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=85.12 E-value=0.27 Score=39.72 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=33.6
Q ss_pred EEEecCCccceeeccCCccHHHHHHHcCCEEEecCCC
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSN 38 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~ 38 (238)
.+.||.++.+.-|||+|.|++--.+-||.+|+|.+..
T Consensus 187 ~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 223 (251)
T 2asb_A 187 RVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 223 (251)
T ss_dssp EEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESS
T ss_pred EEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHH
Confidence 4678999999999999999999999999999996644
No 82
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=77.25 E-value=0.72 Score=37.22 Aligned_cols=38 Identities=13% Similarity=0.083 Sum_probs=34.5
Q ss_pred EEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCC
Q psy11278 150 MMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEAN 187 (238)
Q Consensus 150 ~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~ 187 (238)
+.+.+|....+.-|||+|++++--++-||.+|.+-...
T Consensus 186 a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 223 (251)
T 2asb_A 186 ARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 223 (251)
T ss_dssp EEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESS
T ss_pred EEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHH
Confidence 78899999999999999999999999999999885443
No 83
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=76.80 E-value=0.61 Score=34.73 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=23.6
Q ss_pred EEEecCCccceeeccCCccHHHHHHHcC
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEETG 29 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t~ 29 (238)
.+.+..+..|.+|||.|.|+..||--+.
T Consensus 36 ~i~i~ged~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 36 LIDIDGEDSALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp EEEEEEGGGTTTTCGGGHHHHHHHHHHH
T ss_pred EEEEecCCcceEECCCCcchHHHHHHHH
Confidence 3566778889999999999999997763
No 84
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=74.05 E-value=1.2 Score=37.82 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=33.4
Q ss_pred EEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccC
Q psy11278 150 MMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPE 185 (238)
Q Consensus 150 ~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~ 185 (238)
+.+.+|....+.-|||+|++++--++-||.+|.+-.
T Consensus 305 ~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 305 ARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp EEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred EEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 789999999999999999999999999999998753
No 85
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=72.20 E-value=0.92 Score=30.70 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=21.0
Q ss_pred EEEecCCccceeeccCCccHHHHHHH
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEE 27 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~ 27 (238)
++.|-...-|.+||++|+.|++|+++
T Consensus 38 ~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 38 EIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp EEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 46666777799999999999888764
No 86
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=69.92 E-value=1.3 Score=37.70 Aligned_cols=38 Identities=13% Similarity=0.083 Sum_probs=34.6
Q ss_pred EEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCC
Q psy11278 150 MMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEAN 187 (238)
Q Consensus 150 ~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~ 187 (238)
+.+.+|....+.-|||+|++++-.++-||.+|.+-...
T Consensus 309 a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 309 ARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp EEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred EEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 78899999999999999999999999999999885443
No 87
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=54.52 E-value=53 Score=23.02 Aligned_cols=36 Identities=8% Similarity=0.164 Sum_probs=23.2
Q ss_pred hHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHH
Q psy11278 169 NLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLAR 212 (238)
Q Consensus 169 ~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~ 212 (238)
.|++-++..|+.. +.-+. +.-.+.|+|-|++|.+-.
T Consensus 104 mirqarkfagtvt-ytl~g-------n~l~i~itgvpeqvrkel 139 (170)
T 4hhu_A 104 MIRQARKFAGTVT-YTLSG-------NRLVIVITGVPEQVRKEL 139 (170)
T ss_dssp HHHHHHHTTCEEE-EEECS-------SEEEEEEESCCHHHHHHH
T ss_pred HHHHHHhhcceEE-EEEeC-------CEEEEEEeCCcHHHHHHH
Confidence 4566666666653 32222 246899999999997633
No 88
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=50.34 E-value=2.9 Score=30.98 Aligned_cols=32 Identities=13% Similarity=0.228 Sum_probs=25.4
Q ss_pred EEEEeCCCeeeEEecCCCchHHHHHHHhCCeE
Q psy11278 150 MMMEISPQHHPIMEGPNAINLKTIMAQTGAQI 181 (238)
Q Consensus 150 ~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I 181 (238)
..+.+...-.|.+||+.|++++.|+--+...+
T Consensus 35 i~i~i~ged~glLIGK~G~TL~ALQyL~~~~v 66 (152)
T 2pt7_G 35 LLIDIDGEDSALLIGEKGYRYKALSYLLFNWI 66 (152)
T ss_dssp EEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHH
T ss_pred EEEEEecCCcceEECCCCcchHHHHHHHHHHh
Confidence 55667777889999999999999987765444
No 89
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=49.42 E-value=4.6 Score=34.37 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=50.8
Q ss_pred ccceeeccCCccHHHHHHHc-CCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhCCce-------------EE
Q psy11278 9 DHSHIIGRGGLTIKKVMEET-GCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELTPLI-------------FC 74 (238)
Q Consensus 9 ~~g~IIGk~G~~I~~I~~~t-~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~~~~-------------~~ 74 (238)
-+|..||++|++|+.|.++. |=+|+|-.-++. + +......+.|.. ..
T Consensus 250 pvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d--------------p-----~~fi~nalsPA~V~~V~~~~~~~~~a~ 310 (366)
T 1k0r_A 250 AKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD--------------P-----ARFVANALSPAKVVSVSVIDQTARAAR 310 (366)
T ss_dssp HHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS--------------H-----HHHHHHHTTTSCCSEEEEEETTTTEEE
T ss_pred CcccccCCcchHHHHHHHHhCCCeEEEEEcCCC--------------H-----HHHHHHhcCCcceeEEEEEcCCCcEEE
Confidence 46889999999999999999 999988653321 1 111112222211 11
Q ss_pred EeecC--cCCCCCCCChHHHHHHHHhCceEEeeC
Q psy11278 75 FEYPL--MGSTPNANSPFVQIIQEAYNVQVMFRN 106 (238)
Q Consensus 75 ~~~p~--~~~~~~~~g~~i~~i~~~~gv~I~~~~ 106 (238)
+-+|. .+..+|++|.+++-..+-+|-+|.+.+
T Consensus 311 V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 344 (366)
T 1k0r_A 311 VVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG 344 (366)
T ss_dssp EEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEE
T ss_pred EEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeE
Confidence 22222 112467899999988888898888765
No 90
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=46.86 E-value=20 Score=28.28 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=43.8
Q ss_pred EEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHH
Q psy11278 150 MMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLV 216 (238)
Q Consensus 150 ~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~ 216 (238)
.-+.+++..+..++|+++..++.|.+.+++.|.+-.. ..|-|.++......+...|.
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~N----------G~IWi~~~~~~~~~~~~ai~ 194 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQN----------GLIWVNGDRRKVSIAEEAIY 194 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECTT----------SEEEEESCHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEECC----------cEEEEeCCchhHHHHHHHHH
Confidence 3467888999999999999999999999999998542 45678888765554444443
No 91
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=45.28 E-value=32 Score=27.07 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=44.5
Q ss_pred EEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhh
Q psy11278 3 LDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVREL 68 (238)
Q Consensus 3 i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~ 68 (238)
+.++...+..++|+++..++.|.+.+++.|-+-. | ..|-|.+.......+...|+.+
T Consensus 140 ~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~-N--------G~IWi~~~~~~~~~~~~ai~~~ 196 (229)
T 2ba0_A 140 VAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ-N--------GLIWVNGDRRKVSIAEEAIYLI 196 (229)
T ss_dssp EECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT-T--------SEEEEESCHHHHHHHHHHHHHH
T ss_pred EEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC-C--------cEEEEeCCchhHHHHHHHHHHH
Confidence 4677788888999999999999999999999843 2 5788998877666666666544
No 92
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=44.29 E-value=7.2 Score=30.49 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=20.3
Q ss_pred EEEecCCccceeeccCCccHHHHHHH
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEE 27 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~ 27 (238)
++.|-...-|.+||++|+.|++|+++
T Consensus 43 ~I~I~t~rPg~vIG~~G~~I~~L~~~ 68 (210)
T 3j20_C 43 KVIIFAANPGYVIGRGGRRIRELTRI 68 (210)
T ss_dssp EEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEeCCCceEEcCCchhHHHHHHH
Confidence 45566666689999999999987653
No 93
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=43.60 E-value=8 Score=30.83 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=21.2
Q ss_pred EEEecCCccceeeccCCccHHHHHHHc
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEET 28 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t 28 (238)
++.|-...-|.+||++|..|++|++..
T Consensus 47 ~I~I~t~rPg~VIGkkG~~I~~L~~~l 73 (240)
T 3u5c_D 47 EVIIRATRTQDVLGENGRRINELTLLV 73 (240)
T ss_dssp EEEEEESCHHHHHTTTTCTHHHHHHHH
T ss_pred EEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 455666667899999999999887654
No 94
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=43.58 E-value=6.9 Score=32.15 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=17.8
Q ss_pred EecCC-ccceeeccCCccHHHHHH
Q psy11278 4 DVSYT-DHSHIIGRGGLTIKKVME 26 (238)
Q Consensus 4 ~ip~~-~~g~IIGk~G~~I~~I~~ 26 (238)
.+..+ +.+.||||+|+.|++|..
T Consensus 245 ~ve~~~~k~i~ig~~g~~ik~i~~ 268 (308)
T 3iev_A 245 IVDRENLKPIIIGKKGQRLKEIGK 268 (308)
T ss_dssp EESSGGGHHHHHCGGGHHHHHHHH
T ss_pred EEccCCcceEEEcCCcHHHHHHHH
Confidence 34444 558899999999999983
No 95
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=42.77 E-value=3.3 Score=32.79 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=25.4
Q ss_pred EEecCCccceeeccCCccHHHHHHHcCCEEEe
Q psy11278 3 LDVSYTDHSHIIGRGGLTIKKVMEETGCHVHF 34 (238)
Q Consensus 3 i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i 34 (238)
+.|.....|.+|||.|.++..||.-++.-++-
T Consensus 96 i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~ 127 (225)
T 3gku_A 96 VNLKGDDMGILIGKRGQTLDSLQYLVSLVVNK 127 (225)
T ss_dssp EEEECHHHHHCSTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCccceeecCCCeEhHHHHHHHHHHHHh
Confidence 45666678999999999999999988744443
No 96
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=42.21 E-value=35 Score=21.09 Aligned_cols=17 Identities=12% Similarity=0.147 Sum_probs=13.6
Q ss_pred eEEEEEcCHHHHHHHHH
Q psy11278 197 SSVTVSGNIDSVYLARQ 213 (238)
Q Consensus 197 ~~v~I~G~~~~v~~A~~ 213 (238)
-.+.|+|-|++|.+-..
T Consensus 42 leiritgvpeqvrkela 58 (85)
T 2kl8_A 42 LEIRITGVPEQVRKELA 58 (85)
T ss_dssp EEEEEESCCHHHHHHHH
T ss_pred eEEEEecChHHHHHHHH
Confidence 67999999999976433
No 97
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=41.52 E-value=1.2e+02 Score=23.56 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=17.7
Q ss_pred CCCeEEEEe--CHHHHHHHHHHHHhh
Q psy11278 45 KSNQVSIAG--SLLGLERARYRVREL 68 (238)
Q Consensus 45 ~~~~v~I~G--~~~~v~~A~~~I~~~ 68 (238)
.+..+.++| +.+.+..|.+.+..+
T Consensus 95 ~SGKiV~TGAkS~e~a~~A~~ki~~~ 120 (218)
T 3eik_A 95 ASGKMVITGAKSEKSSRMAAQRYAKI 120 (218)
T ss_dssp TTSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 457999998 478888877766543
No 98
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=40.54 E-value=1.2e+02 Score=22.91 Aligned_cols=83 Identities=11% Similarity=0.129 Sum_probs=46.5
Q ss_pred CCCeEEEEe--CHHHHHHHHHHHHhhCC------c---------eEEEeecCcCCCCCCCChHHHHHHHHhCceEEeeC-
Q psy11278 45 KSNQVSIAG--SLLGLERARYRVRELTP------L---------IFCFEYPLMGSTPNANSPFVQIIQEAYNVQVMFRN- 106 (238)
Q Consensus 45 ~~~~v~I~G--~~~~v~~A~~~I~~~~~------~---------~~~~~~p~~~~~~~~~g~~i~~i~~~~gv~I~~~~- 106 (238)
.++.+.++| +.+.+..|.+.+..++. . ..++++|+- -.+..+...++....+.+
T Consensus 57 ~SGKiv~TGaks~e~~~~a~~~i~~~L~~lg~~~~~~~~~i~NIvas~dl~~~--------I~Le~la~~~~~~~~YEPE 128 (180)
T 1ytb_A 57 ASGKMVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFP--------IRLEGLAFSHGTFSSYEPE 128 (180)
T ss_dssp TTSEEEEEEESSHHHHHHHHHHHHHHHHHHTCCCCCEEEEEEEEEEEEECSSC--------BCHHHHHHHTTTTEECCTT
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEECCCc--------cCHHHHHHhcccceEECCc
Confidence 468999999 67888888887644321 1 134455542 224555545443333322
Q ss_pred ----------CCCC-----CCcEEEEEccccchHHHHHHHHHHHH
Q psy11278 107 ----------RPKL-----QPTLVMVKGCEKDVERVKEATTKLIE 136 (238)
Q Consensus 107 ----------~~~~-----~~~~v~I~G~~~~v~~a~~ai~~~~~ 136 (238)
.|+. .+..|+++|... .+.+++|+..+..
T Consensus 129 ~fPGliyR~~~pkv~~lIF~SGkivitGak~-~~~~~~a~~~i~p 172 (180)
T 1ytb_A 129 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQ-REEIYQAFEAIYP 172 (180)
T ss_dssp TCSSEEEECSSSCCEEEECTTSEEEEEEESS-HHHHHHHHHHHHH
T ss_pred cCCcEEEEeCCCcEEEEEecCCeEEEEecCC-HHHHHHHHHHHHH
Confidence 1221 357899999864 3344555555444
No 99
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=39.78 E-value=8.7 Score=30.72 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=22.3
Q ss_pred EEEecCCccceeeccCCccHHHHHHHcC
Q psy11278 2 KLDVSYTDHSHIIGRGGLTIKKVMEETG 29 (238)
Q Consensus 2 ~i~ip~~~~g~IIGk~G~~I~~I~~~t~ 29 (238)
++.|-...-|.+||++|+.|++|++...
T Consensus 50 ~I~I~tarPg~vIGkkG~~I~~L~~~L~ 77 (243)
T 2xzm_C 50 EIRIKATKPQQVIGVEGKKHKELTQFLQ 77 (243)
T ss_dssp EEEEEESCHHHHHCSSSHHHHHHHHHHH
T ss_pred EEEEEcCCCceEECCCchHHHHHHHHHH
Confidence 4566667778999999999999887543
No 100
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=39.15 E-value=9.1 Score=30.10 Aligned_cols=26 Identities=4% Similarity=-0.041 Sum_probs=20.1
Q ss_pred EEecCCccceeeccCCccHHHHHHHc
Q psy11278 3 LDVSYTDHSHIIGRGGLTIKKVMEET 28 (238)
Q Consensus 3 i~ip~~~~g~IIGk~G~~I~~I~~~t 28 (238)
+.|-...-+.+||++|+.|++|+++.
T Consensus 74 I~I~~~rPg~vIGk~g~~i~~L~~~l 99 (218)
T 3bbn_C 74 VIIHMGFPKLLIENRPQGVEDLKINV 99 (218)
T ss_dssp CEEEESCTTTTSCSSSCTTHHHHHHH
T ss_pred EEEEecCCCcEecCCcHHHHHHHHHH
Confidence 45556667889999999998887654
No 101
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=38.34 E-value=7.8 Score=30.66 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=19.9
Q ss_pred EEecCCccceeeccCCccHHHHHHHc
Q psy11278 3 LDVSYTDHSHIIGRGGLTIKKVMEET 28 (238)
Q Consensus 3 i~ip~~~~g~IIGk~G~~I~~I~~~t 28 (238)
+.|-...=|.+||++|+.|++|+++.
T Consensus 48 I~I~tarPg~vIGkkG~~I~~L~~~l 73 (227)
T 3iz6_B 48 IIIRATRTQNVLGEKGRRIRELTSVV 73 (227)
T ss_dssp CEEECTTHHHHHCSSSSHHHHHHHHH
T ss_pred EEEEeCCCceEEcCCchhHHHHHHHH
Confidence 44555566889999999999887653
No 102
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=37.17 E-value=11 Score=30.01 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=20.0
Q ss_pred EEecCCccceeeccCCccHHHHHHH
Q psy11278 3 LDVSYTDHSHIIGRGGLTIKKVMEE 27 (238)
Q Consensus 3 i~ip~~~~g~IIGk~G~~I~~I~~~ 27 (238)
+.|-...-|.+||++|+.|++|+++
T Consensus 66 I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 66 VTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp CEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred EEEEeCCCcceecCCchHHHHHHHH
Confidence 4555666789999999999988765
No 103
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=36.37 E-value=6.8 Score=30.54 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=19.0
Q ss_pred EEecCCccceeeccCCccHHHHHHH
Q psy11278 3 LDVSYTDHSHIIGRGGLTIKKVMEE 27 (238)
Q Consensus 3 i~ip~~~~g~IIGk~G~~I~~I~~~ 27 (238)
+.|-...-|.+||++|+.|++|+++
T Consensus 65 I~I~~~rpg~viGk~G~~i~~L~~~ 89 (206)
T 3r8n_C 65 VTIHTARPGIVIGKKGEDVEKLRKV 89 (206)
T ss_dssp CEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEECCCCccccCcchHHHHHHHH
Confidence 4455556688999999999887753
No 104
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=34.98 E-value=83 Score=24.67 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=44.5
Q ss_pred EEecCCccceeeccCCccHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEe-CHHHHHHHHHHHHhh
Q psy11278 3 LDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAG-SLLGLERARYRVREL 68 (238)
Q Consensus 3 i~ip~~~~g~IIGk~G~~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~ 68 (238)
+.++...+..++|++|..++.|.+.+++.|-+-. | ..|-|.+ ++.....+...|+.+
T Consensus 152 v~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~-N--------G~IWi~~~~~~~~~~~~~ai~~~ 209 (235)
T 2z0s_A 152 VEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR-N--------GRIHLECPNEDLEAIAVMAIKII 209 (235)
T ss_dssp EECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET-T--------TEEEEECSCHHHHHHHHHHHHHH
T ss_pred EEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC-C--------CEEEEecCCHHHHHHHHHHHHHH
Confidence 5678888999999999999999989999999854 2 5778885 566666666666544
No 105
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=33.15 E-value=8.1 Score=30.70 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=19.3
Q ss_pred EEecCCccceeeccCCccHHHHHHH
Q psy11278 3 LDVSYTDHSHIIGRGGLTIKKVMEE 27 (238)
Q Consensus 3 i~ip~~~~g~IIGk~G~~I~~I~~~ 27 (238)
+.|-...-|.+||++|+.|++|+++
T Consensus 66 I~I~t~rPg~vIGkkG~~I~~L~~~ 90 (233)
T 3i1m_C 66 VTIHTARPGIVIGKKGEDVEKLRKV 90 (233)
T ss_dssp CEEEESCHHHHHCSTTHHHHHHHHH
T ss_pred EEEEECCCCccccCcchHHHHHHHH
Confidence 4455566688999999999888764
No 106
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=31.67 E-value=7.8 Score=30.99 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=21.0
Q ss_pred EEecCCccceeeccCCccHHHHHHHcC
Q psy11278 3 LDVSYTDHSHIIGRGGLTIKKVMEETG 29 (238)
Q Consensus 3 i~ip~~~~g~IIGk~G~~I~~I~~~t~ 29 (238)
+.|-...-|.+||++|+.|++|+++..
T Consensus 48 I~I~tarPg~vIGkkG~~I~~L~~~L~ 74 (243)
T 2zkq_c 48 IIILATRTQNVLGEKGRRIRELTAVVQ 74 (243)
T ss_dssp CEEEESCHHHHHCGGGHHHHHHHHHHH
T ss_pred EEEEeCCCceEEcCCchHHHHHHHHHH
Confidence 445556678899999999999887643
No 107
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=30.74 E-value=7 Score=32.11 Aligned_cols=17 Identities=35% Similarity=0.659 Sum_probs=14.7
Q ss_pred ccceeeccCCccHHHHH
Q psy11278 9 DHSHIIGRGGLTIKKVM 25 (238)
Q Consensus 9 ~~g~IIGk~G~~I~~I~ 25 (238)
+.+.|||++|+.||+|.
T Consensus 241 ~k~iiig~~g~~lk~i~ 257 (301)
T 1wf3_A 241 QKAIVIGEGGRKIKEIG 257 (301)
T ss_dssp HHHHHHCGGGHHHHHHH
T ss_pred ceEEEEeCCchHHHHHH
Confidence 44889999999999876
No 108
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=29.55 E-value=2.1e+02 Score=22.60 Aligned_cols=83 Identities=11% Similarity=0.149 Sum_probs=46.3
Q ss_pred CCCeEEEEe--CHHHHHHHHHHHHhhCC---------------ceEEEeecCcCCCCCCCChHHHHHHHHhCceEEeeC-
Q psy11278 45 KSNQVSIAG--SLLGLERARYRVRELTP---------------LIFCFEYPLMGSTPNANSPFVQIIQEAYNVQVMFRN- 106 (238)
Q Consensus 45 ~~~~v~I~G--~~~~v~~A~~~I~~~~~---------------~~~~~~~p~~~~~~~~~g~~i~~i~~~~gv~I~~~~- 106 (238)
.++.+.++| +.+.+..|.+.+..++. ...++++|+- -.+..+...++-...+.+
T Consensus 117 ~SGKiV~TGaks~e~a~~A~~~i~~~L~~lg~~~~~~~f~IqNIVas~dl~f~--------I~Le~la~~~~~~~~YEPE 188 (240)
T 1rm1_A 117 ASGKMVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFP--------IRLEGLAFSHGTFSSYEPE 188 (240)
T ss_dssp TTSEEEEEEESSHHHHHHHHHHHHHHHHHHTCCCCCEEEEEEEEEEEEECSSC--------BCHHHHHHHTTTTEEEETT
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHHHHHHcCCCcccCcceEEEEEEEEeCCCc--------cCHHHHHHhchhccEECCc
Confidence 457999999 67888888777644321 1134455542 235555555543333322
Q ss_pred ----------CCCC-----CCcEEEEEccccchHHHHHHHHHHHH
Q psy11278 107 ----------RPKL-----QPTLVMVKGCEKDVERVKEATTKLIE 136 (238)
Q Consensus 107 ----------~~~~-----~~~~v~I~G~~~~v~~a~~ai~~~~~ 136 (238)
.|+. .+..|+|+|... .+.+++|+..+..
T Consensus 189 ~fPGLiyR~~~pkvvllIF~SGKIviTGaK~-~~~~~~Ai~~i~p 232 (240)
T 1rm1_A 189 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQ-REEIYQAFEAIYP 232 (240)
T ss_dssp TEEEEEEEETTTTEEEEECTTSEEEEEEESS-HHHHHHHHHHHHH
T ss_pred cCCceEEEeCCCcEEEEEecCCEEEEEecCC-HHHHHHHHHHHHH
Confidence 1211 357899999864 3344555555444
No 109
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=28.94 E-value=58 Score=22.80 Aligned_cols=39 Identities=8% Similarity=-0.068 Sum_probs=20.9
Q ss_pred ceEEEEEcCHHHHHHHHHHHHhhcCCCCceEEEEeecCC
Q psy11278 196 KSSVTVSGNIDSVYLARQMLVVSSVRPRRRLLLITIPND 234 (238)
Q Consensus 196 ~~~v~I~G~~~~v~~A~~~I~~~l~~~~p~~~~~~~~~~ 234 (238)
.-.+.|+|-|++|.+-...-.+.|..---+-++|.++-+
T Consensus 42 ~l~i~itgvpeqvrkelakeaerl~~efni~v~y~imgs 80 (170)
T 4hhu_A 42 RLVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIMGS 80 (170)
T ss_dssp EEEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEECT
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEEeC
Confidence 357888999988875333222322221234555555443
No 110
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=28.86 E-value=21 Score=30.06 Aligned_cols=79 Identities=13% Similarity=0.158 Sum_probs=49.2
Q ss_pred ccceeeccCCccHHHHHHHc-CCEEEecCCCCCCCCCCCCeEEEEeCHHHHHHHHHHHHhhCCc-------------eEE
Q psy11278 9 DHSHIIGRGGLTIKKVMEET-GCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELTPL-------------IFC 74 (238)
Q Consensus 9 ~~g~IIGk~G~~I~~I~~~t-~~~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~~~~-------------~~~ 74 (238)
-+|..||.+|++|+.+.++. |=+|++-.-++. + +......+.|. ...
T Consensus 246 pvGacvg~~G~ri~~i~~el~ge~Idii~~s~d--------------~-----~~fi~nal~Pa~v~~v~~~d~~~~~~~ 306 (344)
T 1hh2_P 246 PIGACIGEGGSRIAAILKELKGEKLDVLKWSDD--------------P-----KQLIANALAPATVIEVEILDKENKAAR 306 (344)
T ss_dssp HHHHHHCTTSTTHHHHHHHTTTCEEEEEECCSS--------------H-----HHHHHHHTCSSCCSEEEEEETTTTEEE
T ss_pred ccceeeccCCcEeHHHHHHhCCCeeeEEecCCC--------------H-----HHHHHHhcCccEEEEEEEEcCCCCEEE
Confidence 35889999999999999999 888888653321 1 11111222221 122
Q ss_pred EeecC--cCCCCCCCChHHHHHHHHhCceEEeeC
Q psy11278 75 FEYPL--MGSTPNANSPFVQIIQEAYNVQVMFRN 106 (238)
Q Consensus 75 ~~~p~--~~~~~~~~g~~i~~i~~~~gv~I~~~~ 106 (238)
+-+|. .+..+|++|.+++--.+-+|-++.+.+
T Consensus 307 v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 307 VLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp EEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred EEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 22332 112467889999887877888877654
No 111
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=27.89 E-value=56 Score=22.06 Aligned_cols=52 Identities=6% Similarity=-0.011 Sum_probs=36.5
Q ss_pred CccHHHHHHHcCCEEEecCCCCCC-CCC--CCCeEEEEeCHHHHHHHHHHHHhhC
Q psy11278 18 GLTIKKVMEETGCHVHFPDSNRSV-NAE--KSNQVSIAGSLLGLERARYRVRELT 69 (238)
Q Consensus 18 G~~I~~I~~~t~~~I~i~~~~~~~-~~~--~~~~v~I~G~~~~v~~A~~~I~~~~ 69 (238)
..-|.++-.++|+.++|-..+-.. .+. ..=.+.+.|+.+++++|...+++.-
T Consensus 35 ~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~ 89 (106)
T 3dhx_A 35 APLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHH 89 (106)
T ss_dssp CCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCC
Confidence 346889999999999886633100 000 1126778999999999999998763
No 112
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=26.82 E-value=16 Score=29.10 Aligned_cols=28 Identities=11% Similarity=0.082 Sum_probs=21.6
Q ss_pred EEEEeCCCeeeEEecCCCchHHHHHHHh
Q psy11278 150 MMMEISPQHHPIMEGPNAINLKTIMAQT 177 (238)
Q Consensus 150 ~~v~i~~~~~~~iIG~~G~~I~~I~~~t 177 (238)
.++.|....-+.+||++|..|++|+..-
T Consensus 46 i~I~I~t~rPg~VIGkkG~~I~~L~~~l 73 (240)
T 3u5c_D 46 TEVIIRATRTQDVLGENGRRINELTLLV 73 (240)
T ss_dssp EEEEEEESCHHHHHTTTTCTHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 4566666666789999999999887654
No 113
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=26.32 E-value=76 Score=24.90 Aligned_cols=58 Identities=24% Similarity=0.306 Sum_probs=43.8
Q ss_pred EEEEeCCCeeeEEecCCCchHHHHHHHhCCeEEccCCCCCCCCCCcceEEEEEc-CHHHHHHHHHHHHh
Q psy11278 150 MMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSG-NIDSVYLARQMLVV 217 (238)
Q Consensus 150 ~~v~i~~~~~~~iIG~~G~~I~~I~~~tga~I~~p~~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~ 217 (238)
.-+.+++..+..++|++|..++.|.+++++.|.+-.. ..|-|.+ +++.+..+...|..
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~N----------G~IWi~~~~~~~~~~~~~ai~~ 208 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVARN----------GRIHLECPNEDLEAIAVMAIKI 208 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEETT----------TEEEEECSCHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeCC----------CEEEEecCCHHHHHHHHHHHHH
Confidence 4568888999999999999999999999999988652 4567776 45555555444443
No 114
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=24.97 E-value=17 Score=29.06 Aligned_cols=28 Identities=11% Similarity=0.064 Sum_probs=22.7
Q ss_pred EEEEeCCCeeeEEecCCCchHHHHHHHh
Q psy11278 150 MMMEISPQHHPIMEGPNAINLKTIMAQT 177 (238)
Q Consensus 150 ~~v~i~~~~~~~iIG~~G~~I~~I~~~t 177 (238)
.++.|....-+.+||++|..|++|+..-
T Consensus 49 i~I~I~tarPg~vIGkkG~~I~~L~~~L 76 (243)
T 2xzm_C 49 TEIRIKATKPQQVIGVEGKKHKELTQFL 76 (243)
T ss_dssp EEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCceEECCCchHHHHHHHHH
Confidence 5667766777889999999999988763
No 115
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.85 E-value=17 Score=28.72 Aligned_cols=27 Identities=7% Similarity=0.124 Sum_probs=21.9
Q ss_pred EEEEeCCCeeeEEecCCCchHHHHHHH
Q psy11278 150 MMMEISPQHHPIMEGPNAINLKTIMAQ 176 (238)
Q Consensus 150 ~~v~i~~~~~~~iIG~~G~~I~~I~~~ 176 (238)
.++.|....-+.+||++|..|++++..
T Consensus 46 i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp ECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 566676677788999999999987765
No 116
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium cellulosum} PDB: 3rgi_A
Probab=22.68 E-value=24 Score=28.48 Aligned_cols=65 Identities=18% Similarity=0.232 Sum_probs=42.2
Q ss_pred EEecCCCchHHHHHHHhCC-eEEccCCCCCCCCCCcceEEEEEcCHHHHHHHHHHHHhhc---CCCCceEEEEeec
Q psy11278 161 IMEGPNAINLKTIMAQTGA-QIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQMLVVSS---VRPRRRLLLITIP 232 (238)
Q Consensus 161 ~iIG~~G~~I~~I~~~tga-~I~~p~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l---~~~~p~~~~~~~~ 232 (238)
.++|..-..++++....+. .+.+-..+.| +.++|.|+.+++..+...+.+.- .+..|+..-|+.|
T Consensus 125 av~~~~~~~v~~~l~~~~~~~v~iA~~Nsp-------~~~visG~~~al~~~~~~l~~~~~~~~~~L~v~~afHS~ 193 (281)
T 3sbm_A 125 AVIGLDEERVRELLDQNGATAVDIANLNSP-------SQVVISGAKDEIARLQVPFEAAGAKKYTVLRVSAAFHSR 193 (281)
T ss_dssp EEESCCHHHHHHHHHHTTCTTEEEEEEEET-------TEEEEEECHHHHHHTHHHHHHHTCSEEEECCCSBCTTSG
T ss_pred EEeCCCHHHHHHHHHHcCCCCEEEEEEcCc-------cCEEEeCCHHHHHHHHHHHHhcCCceEEECCCCCCcchH
Confidence 4567777788888777542 3444433333 67999999999999988888731 1234555555443
No 117
>4e9j_A General secretion pathway protein D; homodimer, XCPQ, periplasmic domain, structural protein, PER space, outer membrane; 2.03A {Pseudomonas aeruginosa} PDB: 4ec5_A
Probab=22.29 E-value=2.8e+02 Score=21.54 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.9
Q ss_pred CCeEEEEeCHHHHHHHHHHHHhh
Q psy11278 46 SNQVSIAGSLLGLERARYRVREL 68 (238)
Q Consensus 46 ~~~v~I~G~~~~v~~A~~~I~~~ 68 (238)
.+.+.|+|+++.++++++.|..+
T Consensus 148 tN~Liv~g~~~~i~~i~~li~~l 170 (246)
T 4e9j_A 148 ANALIISDRSANIARIEDVIRQL 170 (246)
T ss_dssp GTEEEEEECHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCHHHHHHHHHHHHHh
Confidence 46999999999999999999876
No 118
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=20.19 E-value=1.2e+02 Score=22.65 Aligned_cols=56 Identities=14% Similarity=0.123 Sum_probs=41.4
Q ss_pred EEecCCccceeeccCCc-cHHHHHHHcCCEEEecCCCCCCCCCCCCeEEEEe-CHHHHHHHHHHHHh
Q psy11278 3 LDVSYTDHSHIIGRGGL-TIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAG-SLLGLERARYRVRE 67 (238)
Q Consensus 3 i~ip~~~~g~IIGk~G~-~I~~I~~~t~~~I~i~~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~ 67 (238)
+.||...+..++|+.|. .++.|.+.+++.|-+-. | ..|-|.+ ++.....+...|+.
T Consensus 95 ~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~-N--------G~IWi~~~~~~~~~~v~~aI~~ 152 (175)
T 2ja9_A 95 IDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGL-N--------GKIWVKCEELSNTLACYRTIME 152 (175)
T ss_dssp EECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEET-T--------TEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEcHHHhhHHhcCCCcchHHhhhccCCeEEEEEC-C--------cEEEEecCCHHHHHHHHHHHHH
Confidence 57888888899998888 88889989999998854 2 4777875 55555444455554
Done!