RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11278
(238 letters)
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 56.3 bits (136), Expect = 2e-11
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLER 60
+ + H +IG+ G ++ + +T + P + + SNQ+ I G+ G+E+
Sbjct: 12 ATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-----DPSNQIKITGTKEGIEK 66
Query: 61 ARYRVRELT 69
AR+ V ++
Sbjct: 67 ARHEVLLIS 75
Score = 47.4 bits (113), Expect = 3e-08
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 145 QTSVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGN 204
QT + I +HH + G N L+ + +T +I P +DP + + ++G
Sbjct: 7 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDP------SNQIKITGT 60
Query: 205 IDSVYLARQML 215
+ + AR +
Sbjct: 61 KEGIEKARHEV 71
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 84
Score = 55.2 bits (133), Expect = 4e-11
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLER 60
+ + V H IIGR G I ++ E ++ FPD + + +Q++I G E
Sbjct: 12 LSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDG--NQPQDQITITGYEKNTEA 69
Query: 61 ARYRVRELT 69
AR + +
Sbjct: 70 ARDAILRIV 78
Score = 45.2 bits (107), Expect = 2e-07
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 147 SVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNID 206
S + + + P++HP + G + I + I FP+ +D P + +T++G
Sbjct: 9 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQP---QDQITITGYEK 65
Query: 207 SVYLARQML 215
+ AR +
Sbjct: 66 NTEAARDAI 74
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 54.8 bits (132), Expect = 7e-11
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLER 60
++++V + H ++IG+ G I+K+M+E ++H P +S+ ++I G L+R
Sbjct: 12 IEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-----LQSDIIAITGLAANLDR 66
Query: 61 ARYRVRELT 69
A+ + E
Sbjct: 67 AKAGLLERV 75
Score = 48.3 bits (115), Expect = 2e-08
Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 6/75 (8%)
Query: 141 SLANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVT 200
+L V + +E+ H + G ++ +M + I P +
Sbjct: 3 ALEALVPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQ------SDIIA 56
Query: 201 VSGNIDSVYLARQML 215
++G ++ A+ L
Sbjct: 57 ITGLAANLDRAKAGL 71
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 71
Score = 54.0 bits (130), Expect = 1e-10
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERA 61
++++ + H H+IG+ G I ++ ++ V P + EKSN + I G G+++A
Sbjct: 8 EINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-----EKSNLIRIEGDPQGVQQA 62
Query: 62 RYRVRELT 69
+ + EL
Sbjct: 63 KRELLELA 70
Score = 45.5 bits (108), Expect = 1e-07
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 152 MEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLA 211
+ I + H + G + N+ I Q + P ++ + + + G+ V A
Sbjct: 9 INIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEK------SNLIRIEGDPQGVQQA 62
Query: 212 RQML 215
++ L
Sbjct: 63 KREL 66
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 51.7 bits (124), Expect = 8e-10
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLER 60
+ + + H+ IIG G I+K+M+E + FP S N V++ G +E
Sbjct: 12 EDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA----PDPNCVTVTGLPENVEE 67
Query: 61 ARYRVRELT 69
A + L
Sbjct: 68 AIDHILNLE 76
Score = 44.4 bits (105), Expect = 4e-07
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 145 QTSVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGN 204
+ V + + + H + G ++ IM + I FP++ P + VTV+G
Sbjct: 7 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAP-----DPNCVTVTGL 61
Query: 205 IDSVYLARQML 215
++V A +
Sbjct: 62 PENVEEAIDHI 72
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2,
nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 48.3 bits (115), Expect = 1e-08
Identities = 15/68 (22%), Positives = 32/68 (47%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLER 60
+++ V I+G+GG T+ + E TG + + ++ +V+I GS +
Sbjct: 5 VEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQA 64
Query: 61 ARYRVREL 68
A+Y + +
Sbjct: 65 AQYLISQR 72
Score = 37.1 bits (86), Expect = 2e-04
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 149 IMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSV 208
++ M + + G L TGA+I + + +P + VT++G+ +
Sbjct: 4 LVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF-LPGTRNRRVTITGSPAAT 62
Query: 209 YLARQML 215
A+ ++
Sbjct: 63 QAAQYLI 69
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein,
Tdrkh {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 48.8 bits (116), Expect = 2e-08
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLER 60
+L V IIGRGG TI+ + + +G + + S + I+G+ +
Sbjct: 17 EQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTL-LLSRLIKISGTQKEVAA 75
Query: 61 ARYRVRELT 69
A++ + E
Sbjct: 76 AKHLILEKV 84
Score = 48.4 bits (115), Expect = 3e-08
Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 140 GSLANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSV 199
G L T V + + + + G +++I +GA+I + ++ +L +
Sbjct: 7 GILTENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEG--TLLLSRLI 64
Query: 200 TVSGNIDSVYLARQML 215
+SG V A+ ++
Sbjct: 65 KISGTQKEVAAAKHLI 80
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 79
Score = 47.9 bits (114), Expect = 2e-08
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERA 61
+ V IIGRGG I ++ +E+GC + + + G+ ++ A
Sbjct: 11 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGG---LPERSCMLTGTPESVQSA 67
Query: 62 RYRVREL 68
+ + ++
Sbjct: 68 KRLLDQI 74
Score = 35.2 bits (81), Expect = 9e-04
Identities = 11/71 (15%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 145 QTSVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGN 204
++ + ++ + G + I ++G +I + L + S ++G
Sbjct: 5 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGG----LPERSCMLTGT 60
Query: 205 IDSVYLARQML 215
+SV A+++L
Sbjct: 61 PESVQSAKRLL 71
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 81
Score = 47.3 bits (112), Expect = 4e-08
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLER 60
++ + + +IG+GG TIK++ E G + N + I G +++
Sbjct: 10 QEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDG-PQNTGADKPLRITGDPYKVQQ 68
Query: 61 ARYRVRELT 69
A+ V EL
Sbjct: 69 AKEMVLELI 77
Score = 36.8 bits (85), Expect = 2e-04
Identities = 9/69 (13%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 147 SVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNID 206
+ + + I ++ G +K + + G ++V + + ++G+
Sbjct: 7 NAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQ--NTGADKPLRITGDPY 64
Query: 207 SVYLARQML 215
V A++M+
Sbjct: 65 KVQQAKEMV 73
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 45.3 bits (107), Expect = 1e-07
Identities = 15/68 (22%), Positives = 27/68 (39%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLER 60
V IIG+GG TIK + +++G + + +I G+ ++
Sbjct: 3 FNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDY 62
Query: 61 ARYRVREL 68
AR + E
Sbjct: 63 ARQLIEEK 70
Score = 32.9 bits (75), Expect = 0.004
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 152 MEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLA 211
+ ++ G +K+I Q+GA+I P K T+ G + A
Sbjct: 5 FIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMK-LFTIRGTPQQIDYA 63
Query: 212 RQML 215
RQ++
Sbjct: 64 RQLI 67
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 44.8 bits (106), Expect = 2e-07
Identities = 14/68 (20%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLER 60
++L + + IIG+ G ++KK+ EE+G ++ + N +++AG + +
Sbjct: 6 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-----CPERIITLAGPTNAIFK 60
Query: 61 ARYRVREL 68
A + +
Sbjct: 61 AFAMIIDK 68
Score = 33.6 bits (77), Expect = 0.002
Identities = 12/70 (17%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 147 SVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNID 206
++ + + + + + G ++K + ++GA+I E N P + +T++G +
Sbjct: 3 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCP------ERIITLAGPTN 56
Query: 207 SVYLARQMLV 216
+++ A M++
Sbjct: 57 AIFKAFAMII 66
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 82
Score = 44.1 bits (104), Expect = 6e-07
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEE-TGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLE 59
+++ + H+ +IG G I+ +MEE G H+HFP S+ V I G +E
Sbjct: 12 VEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGS-----GSDTVVIRGPSSDVE 66
Query: 60 RARYRVRELT 69
+A+ ++ L
Sbjct: 67 KAKKQLLHLA 76
Score = 37.5 bits (87), Expect = 1e-04
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 9/75 (12%)
Query: 142 LANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQ-TGAQIVFPEANDPIIPVLKKSSVT 200
LAN V + I + H + G +++IM + G I FP +V
Sbjct: 6 LANIAEVEV--SIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSG------SDTVV 57
Query: 201 VSGNIDSVYLARQML 215
+ G V A++ L
Sbjct: 58 IRGPSSDVEKAKKQL 72
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 43.3 bits (102), Expect = 7e-07
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLER 60
+ + + +IGR G IKK+ + G + F + + I G +
Sbjct: 5 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERI---AQITGPPDRAQH 61
Query: 61 ARYRVREL 68
A + +L
Sbjct: 62 AAEIITDL 69
Score = 32.9 bits (75), Expect = 0.004
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 147 SVIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNID 206
S ++ + I I+ G N +K I G +I F + + ++G D
Sbjct: 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGT----TPERIAQITGPPD 57
Query: 207 SVYLARQML 215
A +++
Sbjct: 58 RAQHAAEII 66
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 90
Score = 42.5 bits (100), Expect = 2e-06
Identities = 10/69 (14%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
Query: 2 KLDVSYTDHSHIIGRGGLTIKKVMEE-TGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLER 60
+ H IIG+ G + K+ ++ H+ F + +++++ G +
Sbjct: 24 SVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE--------GEDKITLEGPTEDVSV 75
Query: 61 ARYRVRELT 69
A+ ++ +
Sbjct: 76 AQEQIEGMV 84
Score = 36.4 bits (84), Expect = 3e-04
Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 16/94 (17%)
Query: 123 DVERVKEATTKLIEHMCGSLANQTSVIMMMEISPQHHPIMEGPNAINLKTIMAQ-TGAQI 181
+ E++ +A T++ + + + H + G NL I Q I
Sbjct: 2 EPEKLGQALTEVYAKA------NSFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHI 55
Query: 182 VFPEANDPIIPVLKKSSVTVSGNIDSVYLARQML 215
F E D I + G + V +A++ +
Sbjct: 56 EFTEGEDKIT---------LEGPTEDVSVAQEQI 80
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 70
Score = 41.4 bits (97), Expect = 4e-06
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERA 61
+L + IIGR G I ++ + +G + + + + V+I GS + A
Sbjct: 5 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQ---VTITGSAASISLA 61
Query: 62 RYRVRE 67
+Y +
Sbjct: 62 QYLINA 67
Score = 32.9 bits (75), Expect = 0.004
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 152 MEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLA 211
+ I + G N+ I +GAQI + VT++G+ S+ LA
Sbjct: 6 LTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEG----SSGRQVTITGSAASISLA 61
Query: 212 RQML 215
+ ++
Sbjct: 62 QYLI 65
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein
1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 84
Score = 40.5 bits (95), Expect = 1e-05
Identities = 8/67 (11%), Positives = 21/67 (31%), Gaps = 9/67 (13%)
Query: 3 LDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERAR 62
+ ++ +IG+ G IK + E + + + + G + A
Sbjct: 5 VAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQNGL---------IWVNGDRRKVSIAE 55
Query: 63 YRVRELT 69
+ +
Sbjct: 56 EAIYLIE 62
Score = 36.3 bits (84), Expect = 3e-04
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 10/65 (15%)
Query: 151 MMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYL 210
++ I+P P + G +K + ++ QIV + + V+G+ V +
Sbjct: 4 IVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ----------NGLIWVNGDRRKVSI 53
Query: 211 ARQML 215
A + +
Sbjct: 54 AEEAI 58
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 75
Score = 39.9 bits (93), Expect = 2e-05
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERA 61
++ + IIG+GG IK++ E+G + + ++I G+ ++ A
Sbjct: 7 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSE---DRIITITGTQDQIQNA 63
Query: 62 RYRVREL 68
+Y ++
Sbjct: 64 QYLLQNS 70
Score = 31.8 bits (72), Expect = 0.012
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 152 MEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLA 211
+ I + G +K I ++GA I E + +T++G D + A
Sbjct: 8 VTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPL----EGSEDRIITITGTQDQIQNA 63
Query: 212 RQML 215
+ +L
Sbjct: 64 QYLL 67
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 84
Score = 37.8 bits (88), Expect = 8e-05
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 1 MKLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLER 60
+ + V +IG G ++M TG + N V E + + L +
Sbjct: 5 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVE---PEAEGIPPVNLMK 61
Query: 61 ARYRVRELT 69
A V+ ++
Sbjct: 62 AAEVVKAIS 70
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754
{Aeropyrum pernix [TaxId: 56636]}
Length = 104
Score = 35.5 bits (82), Expect = 9e-04
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 10/59 (16%)
Query: 11 SHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLLGLERARYRVRELT 69
IIG GG + + E T +++ + +V+I G A+ + L
Sbjct: 25 GRIIGEGGRARRTIEEMTDTYINVGE----------YEVAIIGDYERAMAAKQAIEMLA 73
Score = 24.7 bits (54), Expect = 5.7
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 11/52 (21%)
Query: 164 GPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQML 215
G +TI T I + + V + G+ + A+Q +
Sbjct: 29 GEGGRARRTIEEMTDTYI-----------NVGEYEVAIIGDYERAMAAKQAI 69
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein
1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Length = 69
Score = 33.2 bits (76), Expect = 0.003
Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 10/68 (14%)
Query: 3 LDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAG-SLLGLERA 61
+D+ +IG+ + + ++GC + ++ R + S E
Sbjct: 5 IDIMPVKVPRVIGKNKSMYETLTSKSGCSIFVANNGR---------IWATCPSRFSEEIL 55
Query: 62 RYRVRELT 69
+R++
Sbjct: 56 IEAIRKIE 63
Score = 30.1 bits (68), Expect = 0.040
Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 11/66 (16%)
Query: 151 MMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSG-NIDSVY 209
+++I P P + G N +T+ +++G I + + + S
Sbjct: 4 VIDIMPVKVPRVIGKNKSMYETLTSKSGCSIFVAN----------NGRIWATCPSRFSEE 53
Query: 210 LARQML 215
+ + +
Sbjct: 54 ILIEAI 59
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide
phosphorylase/guanosine pentaphosphate synthase
(PNPase/GPSI), domain 6 {Streptomyces antibioticus
[TaxId: 1890]}
Length = 54
Score = 31.2 bits (71), Expect = 0.011
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 13 IIGRGGLTIKKVMEETGCHV 32
+IG I ++ E+TG +
Sbjct: 17 VIGPKRQMINQIQEDTGAEI 36
Score = 26.2 bits (58), Expect = 0.65
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 148 VIMMMEISPQHHPIMEGPNAINLKTIMAQTGAQI 181
I+ ++I + GP + I TGA+I
Sbjct: 3 RIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEI 36
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein
1, ECR1 {Aeropyrum pernix [TaxId: 56636]}
Length = 87
Score = 31.6 bits (72), Expect = 0.014
Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 10/68 (14%)
Query: 3 LDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAG-SLLGLERA 61
+++S +IGR +K + E+T C + + R + + + A
Sbjct: 5 VEISPAKVPRVIGRKMSMLKTLEEKTECKIFVARNGR---------IHLECPNEDLEAIA 55
Query: 62 RYRVRELT 69
++ +
Sbjct: 56 VMAIKIID 63
Score = 28.9 bits (65), Expect = 0.16
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 11/66 (16%)
Query: 151 MMEISPQHHPIMEGPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSG-NIDSVY 209
++EISP P + G LKT+ +T +I V + + + N D
Sbjct: 4 IVEISPAKVPRVIGRKMSMLKTLEEKTECKIF----------VARNGRIHLECPNEDLEA 53
Query: 210 LARQML 215
+A +
Sbjct: 54 IAVMAI 59
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African
clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 134
Score = 31.3 bits (71), Expect = 0.046
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 13 IIGRGGLTIKKVMEETGCHV 32
I+G GLT K++ ETGC +
Sbjct: 22 ILGPRGLTAKQLEAETGCKI 41
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 122
Score = 29.8 bits (67), Expect = 0.12
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 13 IIGRGGLTIKKVMEETGCHV 32
+IG G T+K + +E +
Sbjct: 23 LIGPRGNTLKNIEKECNAKI 42
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation
syndrome related protein 1, FXR1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 78
Score = 27.2 bits (60), Expect = 0.60
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 8/69 (11%)
Query: 2 KLDVSYTDHSHIIGRGGLTIKKVMEETGCHVHFPDSNRSVNAEKSNQVSIAGSLL-GLER 60
+ V IG G I++ + G E + I G +++
Sbjct: 11 EFVVREDLMGLAIGTHGSNIQQARKVPGVTA-------IELDEDTGTFRIYGESADAVKK 63
Query: 61 ARYRVRELT 69
AR + +
Sbjct: 64 ARGFLEFVE 72
Score = 26.4 bits (58), Expect = 0.86
Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 7/52 (13%)
Query: 164 GPNAINLKTIMAQTGAQIVFPEANDPIIPVLKKSSVTVSGNIDSVYLARQML 215
G + N++ G + + + + + D+V AR L
Sbjct: 24 GTHGSNIQQARKVPGVTAIELDEDTGTFRI-------YGESADAVKKARGFL 68
>d1nd6a_ c.60.1.2 (A:) Prostatic acid phosphatase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 342
Score = 27.9 bits (61), Expect = 1.0
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 98 YNVQVMFRNRPKLQPTLVMVKGCEKD------VERVKEATTKLIEHMCGS 141
Y V++ +RN + +P +M+ GC E V + C +
Sbjct: 293 YFVEMYYRNETQHEPYPLMLPGCSPSCPLERFAELVGPVIPQDWSTECMT 342
>d3buxb1 a.39.1.7 (B:178-263) Cbl {Human (Homo sapiens) [TaxId:
9606]}
Length = 86
Score = 26.0 bits (57), Expect = 1.6
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 157 QHHPIMEGPNAINLKTIMAQTGAQIV 182
+ HPI G A+ LK+ + T +
Sbjct: 34 EVHPISSGLEAMALKSTIDLTCNDYI 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.382
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 832,775
Number of extensions: 35643
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 54
Length of query: 238
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 155
Effective length of database: 1,268,006
Effective search space: 196540930
Effective search space used: 196540930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)