BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1128
         (337 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1C30|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 pdb|1C30|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 pdb|1C30|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 pdb|1C30|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 pdb|1C3O|B Chain B, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
 pdb|1C3O|D Chain D, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
 pdb|1C3O|F Chain F, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
 pdb|1C3O|H Chain H, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
          Length = 382

 Score =  115 bits (288), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/199 (35%), Positives = 106/199 (53%), Gaps = 26/199 (13%)

Query: 4   VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
           VF T M GY E +TDPSY +QI+ LTYP IGN G    D DE       ES ++   GL+
Sbjct: 31  VFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGT--NDADE-------ESSQVHAQGLV 81

Query: 64  VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
           + D+    S++ +   L  +L+ HNI A+A++DTR+LT+ +RE G  +G I+ G     A
Sbjct: 82  IRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAA 141

Query: 124 VTVEDL-VFVDPNRGNLVDQVSTKEVVTYNP-----TGSV-----------HLCVVDCGL 166
           + +E    F   N  +L  +V+T E  ++       TG +           H+   D G 
Sbjct: 142 LALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGA 201

Query: 167 KYNQLRCLIQRGAKLSVIP 185
           K N LR L+ RG +L+++P
Sbjct: 202 KRNILRMLVDRGCRLTIVP 220



 Score = 39.3 bits (90), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 23/42 (54%)

Query: 205 DGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVR 246
           DGT +GI     P FS Q HPE + GP D   LFD FI  + 
Sbjct: 334 DGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIE 375


>pdb|1CS0|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-glutamate Gamma-semialdehyde
 pdb|1CS0|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-glutamate Gamma-semialdehyde
 pdb|1CS0|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-glutamate Gamma-semialdehyde
 pdb|1CS0|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-glutamate Gamma-semialdehyde
 pdb|1KEE|B Chain B, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
 pdb|1KEE|D Chain D, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
 pdb|1KEE|F Chain F, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
 pdb|1KEE|H Chain H, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
          Length = 382

 Score =  115 bits (288), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/199 (35%), Positives = 106/199 (53%), Gaps = 26/199 (13%)

Query: 4   VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
           VF T M GY E +TDPSY +QI+ LTYP IGN G    D DE       ES ++   GL+
Sbjct: 31  VFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGT--NDADE-------ESSQVHAQGLV 81

Query: 64  VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
           + D+    S++ +   L  +L+ HNI A+A++DTR+LT+ +RE G  +G I+ G     A
Sbjct: 82  IRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAA 141

Query: 124 VTVEDL-VFVDPNRGNLVDQVSTKEVVTYNP-----TGSV-----------HLCVVDCGL 166
           + +E    F   N  +L  +V+T E  ++       TG +           H+   D G 
Sbjct: 142 LALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGA 201

Query: 167 KYNQLRCLIQRGAKLSVIP 185
           K N LR L+ RG +L+++P
Sbjct: 202 KRNILRMLVDRGCRLTIVP 220



 Score = 39.3 bits (90), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 23/42 (54%)

Query: 205 DGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVR 246
           DGT +GI     P FS Q HPE + GP D   LFD FI  + 
Sbjct: 334 DGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIE 375


>pdb|1T36|B Chain B, Crystal Structure Of E. Coli Carbamoyl Phosphate
           Synthetase Small Subunit Mutant C248d Complexed With
           Uridine 5'-Monophosphate
 pdb|1T36|D Chain D, Crystal Structure Of E. Coli Carbamoyl Phosphate
           Synthetase Small Subunit Mutant C248d Complexed With
           Uridine 5'-Monophosphate
 pdb|1T36|F Chain F, Crystal Structure Of E. Coli Carbamoyl Phosphate
           Synthetase Small Subunit Mutant C248d Complexed With
           Uridine 5'-Monophosphate
 pdb|1T36|H Chain H, Crystal Structure Of E. Coli Carbamoyl Phosphate
           Synthetase Small Subunit Mutant C248d Complexed With
           Uridine 5'-Monophosphate
          Length = 382

 Score =  115 bits (288), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/199 (35%), Positives = 106/199 (53%), Gaps = 26/199 (13%)

Query: 4   VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
           VF T M GY E +TDPSY +QI+ LTYP IGN G    D DE       ES ++   GL+
Sbjct: 31  VFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGT--NDADE-------ESSQVHAQGLV 81

Query: 64  VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
           + D+    S++ +   L  +L+ HNI A+A++DTR+LT+ +RE G  +G I+ G     A
Sbjct: 82  IRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAA 141

Query: 124 VTVEDL-VFVDPNRGNLVDQVSTKEVVTYNP-----TGSV-----------HLCVVDCGL 166
           + +E    F   N  +L  +V+T E  ++       TG +           H+   D G 
Sbjct: 142 LALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGA 201

Query: 167 KYNQLRCLIQRGAKLSVIP 185
           K N LR L+ RG +L+++P
Sbjct: 202 KRNILRMLVDRGCRLTIVP 220



 Score = 39.3 bits (90), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 23/42 (54%)

Query: 205 DGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVR 246
           DGT +GI     P FS Q HPE + GP D   LFD FI  + 
Sbjct: 334 DGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIE 375


>pdb|1A9X|B Chain B, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
 pdb|1A9X|D Chain D, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
 pdb|1A9X|F Chain F, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
 pdb|1A9X|H Chain H, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
          Length = 379

 Score =  115 bits (287), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/199 (35%), Positives = 106/199 (53%), Gaps = 26/199 (13%)

Query: 4   VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
           VF T M GY E +TDPSY +QI+ LTYP IGN G    D DE       ES ++   GL+
Sbjct: 30  VFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGT--NDADE-------ESSQVHAQGLV 80

Query: 64  VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
           + D+    S++ +   L  +L+ HNI A+A++DTR+LT+ +RE G  +G I+ G     A
Sbjct: 81  IRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAA 140

Query: 124 VTVEDL-VFVDPNRGNLVDQVSTKEVVTYNP-----TGSV-----------HLCVVDCGL 166
           + +E    F   N  +L  +V+T E  ++       TG +           H+   D G 
Sbjct: 141 LALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPQAKKEDELPFHVVAYDFGA 200

Query: 167 KYNQLRCLIQRGAKLSVIP 185
           K N LR L+ RG +L+++P
Sbjct: 201 KRNILRMLVDRGCRLTIVP 219



 Score = 36.6 bits (83), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 23/42 (54%)

Query: 205 DGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVR 246
           DGT +GI     P FS Q +PE + GP D   LFD FI  + 
Sbjct: 333 DGTLQGIHRTDKPAFSFQGNPEASPGPHDAAPLFDHFIELIE 374


>pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
 pdb|1M6V|D Chain D, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
 pdb|1M6V|F Chain F, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
 pdb|1M6V|H Chain H, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
          Length = 382

 Score =  115 bits (287), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/199 (35%), Positives = 106/199 (53%), Gaps = 26/199 (13%)

Query: 4   VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
           VF T M GY E +TDPSY +QI+ LTYP IGN G    D DE       ES ++   GL+
Sbjct: 31  VFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGT--NDADE-------ESSQVHAQGLV 81

Query: 64  VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
           + D+    S++ +   L  +L+ HNI A+A++DTR+LT+ +RE G  +G I+ G     A
Sbjct: 82  IRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAA 141

Query: 124 VTVEDL-VFVDPNRGNLVDQVSTKEVVTYNP-----TGSV-----------HLCVVDCGL 166
           + +E    F   N  +L  +V+T E  ++       TG +           H+   D G 
Sbjct: 142 LALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPQAKKEDELPFHVVAYDFGA 201

Query: 167 KYNQLRCLIQRGAKLSVIP 185
           K N LR L+ RG +L+++P
Sbjct: 202 KRNILRMLVDRGCRLTIVP 220



 Score = 35.4 bits (80), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 22/42 (52%)

Query: 205 DGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVR 246
           DGT +GI     P FS Q HPE +  P D   LFD FI  + 
Sbjct: 334 DGTLQGIHRTDKPAFSFQGHPEASPFPHDAAPLFDHFIELIE 375


>pdb|1JDB|C Chain C, Carbamoyl Phosphate Synthetase From Escherichia Coli
 pdb|1JDB|F Chain F, Carbamoyl Phosphate Synthetase From Escherichia Coli
 pdb|1JDB|I Chain I, Carbamoyl Phosphate Synthetase From Escherichia Coli
 pdb|1JDB|L Chain L, Carbamoyl Phosphate Synthetase From Escherichia Coli
 pdb|1BXR|B Chain B, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 pdb|1BXR|D Chain D, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 pdb|1BXR|F Chain F, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 pdb|1BXR|H Chain H, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 pdb|1CE8|B Chain B, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
 pdb|1CE8|D Chain D, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
 pdb|1CE8|F Chain F, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
 pdb|1CE8|H Chain H, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
          Length = 382

 Score =  115 bits (287), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/199 (35%), Positives = 106/199 (53%), Gaps = 26/199 (13%)

Query: 4   VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
           VF T M GY E +TDPSY +QI+ LTYP IGN G    D DE       ES ++   GL+
Sbjct: 31  VFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGT--NDADE-------ESSQVHAQGLV 81

Query: 64  VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
           + D+    S++ +   L  +L+ HNI A+A++DTR+LT+ +RE G  +G I+ G     A
Sbjct: 82  IRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAA 141

Query: 124 VTVEDL-VFVDPNRGNLVDQVSTKEVVTYNP-----TGSV-----------HLCVVDCGL 166
           + +E    F   N  +L  +V+T E  ++       TG +           H+   D G 
Sbjct: 142 LALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPQAKKEDELPFHVVAYDFGA 201

Query: 167 KYNQLRCLIQRGAKLSVIP 185
           K N LR L+ RG +L+++P
Sbjct: 202 KRNILRMLVDRGCRLTIVP 220



 Score = 39.3 bits (90), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 23/42 (54%)

Query: 205 DGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVR 246
           DGT +GI     P FS Q HPE + GP D   LFD FI  + 
Sbjct: 334 DGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIE 375


>pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli
 pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli
 pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli
 pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli
 pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
 pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
 pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
 pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
 pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-glutamate Gamma-semialdehyde
 pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-glutamate Gamma-semialdehyde
 pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-glutamate Gamma-semialdehyde
 pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-glutamate Gamma-semialdehyde
 pdb|1KEE|A Chain A, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
 pdb|1KEE|C Chain C, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
 pdb|1KEE|E Chain E, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
 pdb|1KEE|G Chain G, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
 pdb|1T36|A Chain A, Crystal Structure Of E. Coli Carbamoyl Phosphate
           Synthetase Small Subunit Mutant C248d Complexed With
           Uridine 5'-Monophosphate
 pdb|1T36|C Chain C, Crystal Structure Of E. Coli Carbamoyl Phosphate
           Synthetase Small Subunit Mutant C248d Complexed With
           Uridine 5'-Monophosphate
 pdb|1T36|E Chain E, Crystal Structure Of E. Coli Carbamoyl Phosphate
           Synthetase Small Subunit Mutant C248d Complexed With
           Uridine 5'-Monophosphate
 pdb|1T36|G Chain G, Crystal Structure Of E. Coli Carbamoyl Phosphate
           Synthetase Small Subunit Mutant C248d Complexed With
           Uridine 5'-Monophosphate
          Length = 1073

 Score = 37.4 bits (85), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 281 KKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTYN 320
           ++  +RK+R+   + P  K++DT AAE    T Y+Y TY 
Sbjct: 509 REAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYE 548


>pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
 pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
 pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
 pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
 pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
 pdb|1M6V|C Chain C, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
 pdb|1M6V|E Chain E, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
 pdb|1M6V|G Chain G, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
          Length = 1073

 Score = 37.4 bits (85), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 281 KKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTYN 320
           ++  +RK+R+   + P  K++DT AAE    T Y+Y TY 
Sbjct: 509 REAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYE 548


>pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
 pdb|1A9X|C Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
 pdb|1A9X|E Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
 pdb|1A9X|G Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
          Length = 1073

 Score = 37.4 bits (85), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 281 KKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTYN 320
           ++  +RK+R+   + P  K++DT AAE    T Y+Y TY 
Sbjct: 509 REAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYE 548


>pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From
           Sulfolobus Solfataricus
          Length = 195

 Score = 34.7 bits (78), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 188 HPIKVPQGWQPLFTNA---NDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINA 244
           H + V +  +PL  +A    D     I HE  P + VQFHPE        ++L++ F+N 
Sbjct: 136 HSLVVDEVHRPLIVDAISAEDNEIMAIHHEEYPIYGVQFHPESVGTSLGYKILYN-FLNR 194

Query: 245 V 245
           V
Sbjct: 195 V 195


>pdb|1WU8|A Chain A, Crystal Structure Of Project Ph0463 From Pyrococcus
           Horikoshii Ot3
 pdb|1WU8|B Chain B, Crystal Structure Of Project Ph0463 From Pyrococcus
           Horikoshii Ot3
 pdb|1WU8|C Chain C, Crystal Structure Of Project Ph0463 From Pyrococcus
           Horikoshii Ot3
          Length = 256

 Score = 32.7 bits (73), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 146 KEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKLSVIPWNHPIKVP 193
           ++VV Y+P G+VH+ V+D G+   + R ++  G +  V+P N    +P
Sbjct: 51  EQVVKYSPKGTVHVGVIDPGVG-TERRAIVIEGDQYLVVPDNGLATLP 97


>pdb|2WR8|A Chain A, Structure Of Pyrococcus Horikoshii Sam Hydroxide
           Adenosyltransferase In Complex With Sah
          Length = 259

 Score = 32.3 bits (72), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 146 KEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKLSVIPWNHPIKVP 193
           ++VV Y+P G+VH+ V+D G+   + R ++  G +  V+P N    +P
Sbjct: 54  EQVVKYSPKGTVHVGVIDPGVG-TERRAIVIEGDQYLVVPDNGLATLP 100


>pdb|1S1M|A Chain A, Crystal Structure Of E. Coli Ctp Synthetase
 pdb|1S1M|B Chain B, Crystal Structure Of E. Coli Ctp Synthetase
 pdb|2AD5|A Chain A, Mechanisms Of Feedback Regulation And Drug Resistance Of
           Ctp Synthetases: Structure Of The E. Coli Ctps/ctp
           Complex At 2.8- Angstrom Resolution.
 pdb|2AD5|B Chain B, Mechanisms Of Feedback Regulation And Drug Resistance Of
           Ctp Synthetases: Structure Of The E. Coli Ctps/ctp
           Complex At 2.8- Angstrom Resolution
          Length = 545

 Score = 31.6 bits (70), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 218 FFSVQFHPEHTAGPADLELLFDIFINAVRDSKTR 251
           F + QFHPE T+ P D   LF  F+ A  + + R
Sbjct: 509 FVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKR 542


>pdb|3B2A|A Chain A, Crystal Structure Of The Archaeal Heat-Like Repeats
           Protein Ton_1937 From Thermococcus Onnurineus Na1
 pdb|3B2A|B Chain B, Crystal Structure Of The Archaeal Heat-Like Repeats
           Protein Ton_1937 From Thermococcus Onnurineus Na1
          Length = 265

 Score = 30.0 bits (66), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 238 FDIFINAVRDSKTRTPVPPIRKTIYDTLVPKDEALIAKSFQTPKKTSVRKMRE-DNGIRP 296
            D+FINA+     +  +  +R   Y   + KD  + +K+F    KT V  +   D+ +R 
Sbjct: 77  LDVFINALSQENEKVTIKALRALGY---LVKDVPMGSKTFLKAAKTLVSLLESPDDMMRI 133

Query: 297 YNKQIDTLAAEHPAQTNYLYLTY 319
             + ID L+   P + + L  TY
Sbjct: 134 --ETIDVLSKLQPLEDSKLVRTY 154


>pdb|2D7J|A Chain A, Crystal Structure Analysis Of Glutamine Amidotransferase
           From Pyrococcus Horikoshii Ot3
          Length = 209

 Score = 29.6 bits (65), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 209 EGIVHESLPFFSVQFHPE 226
           E + HE LP + VQFHPE
Sbjct: 171 EAMKHEELPIYGVQFHPE 188


>pdb|1WL8|A Chain A, Crystal Structure Of Ph1346 Protein From Pyrococcus
           Horikoshii
          Length = 189

 Score = 29.6 bits (65), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 209 EGIVHESLPFFSVQFHPE 226
           E + HE LP + VQFHPE
Sbjct: 151 EAMKHEELPIYGVQFHPE 168


>pdb|1WUO|A Chain A, Crystal Structure Of Metallo-beta-lactamase Imp-1 Mutant
           (d81a)
 pdb|1WUO|B Chain B, Crystal Structure Of Metallo-beta-lactamase Imp-1 Mutant
           (d81a)
 pdb|1WUO|C Chain C, Crystal Structure Of Metallo-beta-lactamase Imp-1 Mutant
           (d81a)
 pdb|1WUO|D Chain D, Crystal Structure Of Metallo-beta-lactamase Imp-1 Mutant
           (d81a)
          Length = 228

 Score = 29.3 bits (64), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 39  PPQDKDEHGILKYFESHRIWISGLIVGDMCDTPSHWNSASTLG-EWLRAHNIPALANVDT 97
           P   KD   ++ +F      I G I        SH++SAST G EWL + +IP  A+  T
Sbjct: 50  PFTAKDTEKLVTWFVERGYKIKGSI-------SSHFHSASTGGIEWLNSRSIPTYASELT 102

Query: 98  RRLTK 102
             L K
Sbjct: 103 NELLK 107


>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
           Complex With
           Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
          Length = 1023

 Score = 28.1 bits (61), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 15/64 (23%), Positives = 33/64 (51%)

Query: 256 PIRKTIYDTLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYL 315
           P++K IY+ +  +   +I ++   P++  V +  E   +R + K+ DT+      +   +
Sbjct: 379 PLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV 438

Query: 316 YLTY 319
           YLT+
Sbjct: 439 YLTH 442


>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
           Complex With Crm1(k548e,k579q)-ran-ranbp1
          Length = 1023

 Score = 28.1 bits (61), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 15/64 (23%), Positives = 33/64 (51%)

Query: 256 PIRKTIYDTLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYL 315
           P++K IY+ +  +   +I ++   P++  V +  E   +R + K+ DT+      +   +
Sbjct: 379 PLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV 438

Query: 316 YLTY 319
           YLT+
Sbjct: 439 YLTH 442


>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
           Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
          Length = 1023

 Score = 28.1 bits (61), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 15/64 (23%), Positives = 33/64 (51%)

Query: 256 PIRKTIYDTLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYL 315
           P++K IY+ +  +   +I ++   P++  V +  E   +R + K+ DT+      +   +
Sbjct: 379 PLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV 438

Query: 316 YLTY 319
           YLT+
Sbjct: 439 YLTH 442


>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1
          Length = 1023

 Score = 28.1 bits (61), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 15/64 (23%), Positives = 33/64 (51%)

Query: 256 PIRKTIYDTLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYL 315
           P++K IY+ +  +   +I ++   P++  V +  E   +R + K+ DT+      +   +
Sbjct: 379 PLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV 438

Query: 316 YLTY 319
           YLT+
Sbjct: 439 YLTH 442


>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
           Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
          Length = 1023

 Score = 28.1 bits (61), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 15/64 (23%), Positives = 33/64 (51%)

Query: 256 PIRKTIYDTLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYL 315
           P++K IY+ +  +   +I ++   P++  V +  E   +R + K+ DT+      +   +
Sbjct: 379 PLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV 438

Query: 316 YLTY 319
           YLT+
Sbjct: 439 YLTH 442


>pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
           Complex With Crm1- Ran-ranbp1
 pdb|4HAU|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
           With Crm1- Ran-ranbp1
 pdb|4HAV|C Chain C, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
           Complex With Crm1-ran-ranbp1
          Length = 1023

 Score = 28.1 bits (61), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 15/64 (23%), Positives = 33/64 (51%)

Query: 256 PIRKTIYDTLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYL 315
           P++K IY+ +  +   +I ++   P++  V +  E   +R + K+ DT+      +   +
Sbjct: 379 PLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV 438

Query: 316 YLTY 319
           YLT+
Sbjct: 439 YLTH 442


>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
           With Crm1(k579a)-ran-ranbp1
          Length = 1023

 Score = 28.1 bits (61), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 15/64 (23%), Positives = 33/64 (51%)

Query: 256 PIRKTIYDTLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYL 315
           P++K IY+ +  +   +I ++   P++  V +  E   +R + K+ DT+      +   +
Sbjct: 379 PLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV 438

Query: 316 YLTY 319
           YLT+
Sbjct: 439 YLTH 442


>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
           Complex With Crm1(k548a)-ran-ranbp1
          Length = 1023

 Score = 28.1 bits (61), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 15/64 (23%), Positives = 33/64 (51%)

Query: 256 PIRKTIYDTLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYL 315
           P++K IY+ +  +   +I ++   P++  V +  E   +R + K+ DT+      +   +
Sbjct: 379 PLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV 438

Query: 316 YLTY 319
           YLT+
Sbjct: 439 YLTH 442


>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
           Excess Crm1 Inhibitor Leptomycin B
          Length = 1023

 Score = 27.7 bits (60), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 15/64 (23%), Positives = 33/64 (51%)

Query: 256 PIRKTIYDTLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYL 315
           P++K IY+ +  +   +I ++   P++  V +  E   +R + K+ DT+      +   +
Sbjct: 379 PLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV 438

Query: 316 YLTY 319
           YLT+
Sbjct: 439 YLTH 442


>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With
           Crm1-ran-ranbp1
 pdb|4GMX|C Chain C, Crystal Structure Of Kpt185 In Complex With
           Crm1-Ran-Ranbp1
          Length = 1060

 Score = 27.7 bits (60), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 15/64 (23%), Positives = 33/64 (51%)

Query: 256 PIRKTIYDTLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYL 315
           P++K IY+ +  +   +I ++   P++  V +  E   +R + K+ DT+      +   +
Sbjct: 416 PLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV 475

Query: 316 YLTY 319
           YLT+
Sbjct: 476 YLTH 479


>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
           Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
          Length = 1049

 Score = 27.7 bits (60), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 15/64 (23%), Positives = 33/64 (51%)

Query: 256 PIRKTIYDTLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYL 315
           P++K IY+ +  +   +I ++   P++  V +  E   +R + K+ DT+      +   +
Sbjct: 379 PLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV 438

Query: 316 YLTY 319
           YLT+
Sbjct: 439 YLTH 442


>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae
           Crm1 (Xpo1p)
          Length = 1033

 Score = 27.7 bits (60), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 15/64 (23%), Positives = 33/64 (51%)

Query: 256 PIRKTIYDTLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYL 315
           P++K IY+ +  +   +I ++   P++  V +  E   +R + K+ DT+      +   +
Sbjct: 377 PLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV 436

Query: 316 YLTY 319
           YLT+
Sbjct: 437 YLTH 440


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,797,725
Number of Sequences: 62578
Number of extensions: 460599
Number of successful extensions: 954
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 911
Number of HSP's gapped (non-prelim): 39
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)