BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1128
(337 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P27708|PYR1_HUMAN CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3
Length = 2225
Score = 227 bits (579), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 108/203 (53%), Positives = 139/203 (68%), Gaps = 6/203 (2%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VFQTGMVGYPEA+TDPSY QILVLTYPLIGNYG+PP + DE G+ K+FES I ++ L+
Sbjct: 28 VFQTGMVGYPEALTDPSYKAQILVLTYPLIGNYGIPPDEMDEFGLCKWFESSGIHVAALV 87
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
VG+ C TPSHW++ TL EWL+ H IP L VDTR LTK +RE G + GK+V P
Sbjct: 88 VGECCPTPSHWSATRTLHEWLQQHGIPGLQGVDTRELTKKLREQGSLLGKLVQNGTEP-- 145
Query: 124 VTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKLSV 183
L F+DPN LV +VS K +N G+ + +DCGLKYNQ+RCL QRGA+++V
Sbjct: 146 ---SSLPFLDPNARPLVPEVSIKTPRVFNTGGAPRILALDCGLKYNQIRCLCQRGAEVTV 202
Query: 184 IPWNHPIKVPQGWQPLFTNANDG 206
+PW+H + Q ++ LF + G
Sbjct: 203 VPWDHALD-SQEYEGLFLSNGPG 224
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 65/101 (64%), Gaps = 6/101 (5%)
Query: 173 CLIQRGAKLSVIPWNHPIKV-----PQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEH 227
CL+ + + NH V P W PLFTNANDG+NEGIVH SLPFFSVQFHPEH
Sbjct: 280 CLLVGSGRCFLTSQNHGFAVETDSLPADWAPLFTNANDGSNEGIVHNSLPFFSVQFHPEH 339
Query: 228 TAGPADLELLFDIFINAVRDSKTRTP-VPPIRKTIYDTLVP 267
AGP+D+ELLFDIF+ V+++ P +R+ + + L P
Sbjct: 340 QAGPSDMELLFDIFLETVKEATAGNPGGQTVRERLTERLCP 380
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 253 PVPPIRKTIYDTLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQT 312
P+PP L D+ + T + +VRK+R++ GI P KQIDT+AAE PAQT
Sbjct: 857 PLPPDLLQQAKCLGFSDKQIALAVLST--ELAVRKLRQELGICPAVKQIDTVAAEWPAQT 914
Query: 313 NYLYLTYNATAHDLAVK 329
NYLYLTY T HDL +
Sbjct: 915 NYLYLTYWGTTHDLTFR 931
>sp|P08955|PYR1_MESAU CAD protein OS=Mesocricetus auratus GN=CAD PE=1 SV=4
Length = 2225
Score = 225 bits (574), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 108/203 (53%), Positives = 137/203 (67%), Gaps = 6/203 (2%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VFQTGMVGYPEA+TDPSY QILVLTYPLIGNYG+P ++DE G+ K+FES ++GL+
Sbjct: 28 VFQTGMVGYPEALTDPSYKAQILVLTYPLIGNYGIPSDEEDEFGLSKWFESSENHVAGLV 87
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
VG+ C TPSHW++ TL EWL+ H IP L VDTR LTK +RE G + GK+V P
Sbjct: 88 VGECCPTPSHWSATCTLHEWLQQHGIPGLQGVDTRELTKKLREQGSLLGKLVQSGTEP-- 145
Query: 124 VTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKLSV 183
L FVDPN L +VS K +N G+ +C +DCGLKYNQ+RCL Q GA+++V
Sbjct: 146 ---STLPFVDPNARPLAPEVSIKTPRVFNAGGAPRICALDCGLKYNQIRCLCQLGAEVTV 202
Query: 184 IPWNHPIKVPQGWQPLFTNANDG 206
+PWNH + Q + LF + G
Sbjct: 203 VPWNHELD-SQKYDGLFLSNGPG 224
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 70/119 (58%), Gaps = 6/119 (5%)
Query: 173 CLIQRGAKLSVIPWNHPIKV-----PQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEH 227
CL+ + + NH V P GW PLFTNAND +NEGIVH+SLPFFSVQFHPEH
Sbjct: 280 CLLVGTGRCFLTSQNHGFAVDADSLPAGWTPLFTNANDCSNEGIVHDSLPFFSVQFHPEH 339
Query: 228 TAGPADLELLFDIFINAVRDSKTRTP-VPPIRKTIYDTLVPKDEALIAKSFQTPKKTSV 285
AGP+D+ELLFD+F+ VR++ P +++ + L P + P+K +
Sbjct: 340 RAGPSDMELLFDVFLETVREAVAGNPGGQTVKERLVQRLCPPGLLIPGSGLPPPRKVLI 398
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%)
Query: 284 SVRKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTYNATAHDL 326
+VRK+R++ GI P KQIDT+AAE PAQTNYLYLTY HDL
Sbjct: 886 AVRKLRQELGICPAVKQIDTVAAEWPAQTNYLYLTYWGNTHDL 928
>sp|Q91437|PYR1_SQUAC CAD protein OS=Squalus acanthias GN=CAD PE=2 SV=1
Length = 2242
Score = 209 bits (533), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 98/185 (52%), Positives = 132/185 (71%), Gaps = 5/185 (2%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VFQTGMVGYPEA+TDPSY QILVLTYPLIGNYG+P ++DEHG+ K+FES +I + L+
Sbjct: 28 VFQTGMVGYPEALTDPSYLSQILVLTYPLIGNYGIPKDEEDEHGLSKWFESAKIHAAALV 87
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
+G+ PSHW+S +L + L+ H IPAL +DTR LTK IRE G + GK+V
Sbjct: 88 IGENSQNPSHWSSVRSLDQRLKEHGIPALEGIDTRSLTKKIREKGTLLGKLVIDGTDE-- 145
Query: 124 VTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKLSV 183
L + DPN+ +LV +VS KE Y+P+G+V + VDCG+KYNQ+R L +RGA ++V
Sbjct: 146 ---NSLPYDDPNKRHLVKEVSIKEPKVYHPSGNVKIMAVDCGMKYNQIRSLCKRGAAVTV 202
Query: 184 IPWNH 188
+PW++
Sbjct: 203 VPWDY 207
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 44/62 (70%)
Query: 188 HPIKVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRD 247
P +P+ W LFTNAND +NEGI+H S P FSVQFHPEH AGP DL LFDIF+ RD
Sbjct: 300 EPCSLPRDWSVLFTNANDQSNEGIIHNSKPLFSVQFHPEHKAGPTDLVDLFDIFLECARD 359
Query: 248 SK 249
K
Sbjct: 360 VK 361
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
Query: 273 IAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTYNATAHDL 326
IA + Q+ + +VR++R++ I P KQIDT+AAE PAQTNYLYLTYN HDL
Sbjct: 881 IAMAIQS-TELAVRRLRQEWKILPVVKQIDTVAAEWPAQTNYLYLTYNGEGHDL 933
>sp|P22572|CARA_NEUCR Carbamoyl-phosphate synthase arginine-specific small chain,
mitochondrial OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cpa-1
PE=3 SV=2
Length = 453
Score = 189 bits (479), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 95/205 (46%), Positives = 130/205 (63%), Gaps = 5/205 (2%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF T +VGYPE+MTDPSY QILV T PLIGNYGVP ++DE +LKYFES I +G++
Sbjct: 81 VFTTSLVGYPESMTDPSYRGQILVFTQPLIGNYGVPSNERDEFNLLKYFESPHIQCAGIV 140
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
V D+ SHW + +LGEW + IPA++ VDTR + ++RE G +I S+
Sbjct: 141 VSDVATQYSHWTAVQSLGEWCASEGIPAISGVDTRAIVTYLREQGSSLARI---SIGDEY 197
Query: 124 VTVEDLVFVDPNRGNLVDQVSTKE-VVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKLS 182
ED F+DP + NLV +VSTK V NP H+ ++DCG+K N LR L+ RGA ++
Sbjct: 198 DADEDEGFIDPGQINLVKRVSTKAPFVVTNPNAKFHVALIDCGVKENILRSLVSRGASVT 257
Query: 183 VIPWNHPI-KVPQGWQPLFTNANDG 206
V P+N+PI KV + + +F + G
Sbjct: 258 VFPYNYPIHKVAENFDGVFISNGPG 282
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSKTR 251
+P ++ F N NDG+NEG++H++ P FS QFHPE GP D LFD ++ V K+
Sbjct: 361 LPSDFKEYFVNLNDGSNEGMMHKTRPIFSTQFHPEAKGGPMDSSYLFDKYMENVELFKSN 420
Query: 252 TPV 254
+ V
Sbjct: 421 SQV 423
>sp|Q2H132|CARA_CHAGB Carbamoyl-phosphate synthase arginine-specific small chain
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=CPA1 PE=3 SV=1
Length = 461
Score = 189 bits (479), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 94/205 (45%), Positives = 128/205 (62%), Gaps = 5/205 (2%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF T +VGYPE+MTDPSY QILV T PLIGNYGVP +DE+G+LKYFES I +G++
Sbjct: 88 VFTTSLVGYPESMTDPSYRGQILVFTQPLIGNYGVPSNQRDEYGLLKYFESPHIQCAGVV 147
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
V D+ + SHW + +L EW +P ++ VDTR + H+RE G +I S+
Sbjct: 148 VADVAEKYSHWTAVESLSEWCAREGVPVISGVDTRAIVTHLREQGSSLARI---SIGDEY 204
Query: 124 VTVEDLVFVDPNRGNLVDQVSTKE-VVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKLS 182
ED F+DP NLV +VSTK V NP + H+ ++DCG+K N LR L+ RGA ++
Sbjct: 205 DADEDEGFIDPGAINLVKRVSTKAPFVVSNPNATFHVALIDCGVKENILRSLVSRGASVT 264
Query: 183 VIPWNHPI-KVPQGWQPLFTNANDG 206
V P+N+PI KV + +F + G
Sbjct: 265 VFPYNYPIHKVADNFDGVFISNGPG 289
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSKTR 251
+P ++ F N NDG+NEG++H++ P FS QFHPE GP D LFD ++ V+ K
Sbjct: 368 LPSEFKEYFVNLNDGSNEGMMHKTRPIFSTQFHPEAKGGPMDSSYLFDKYLENVQMYKDN 427
Query: 252 TPV 254
+ V
Sbjct: 428 SKV 430
>sp|P05990|PYR1_DROME CAD protein OS=Drosophila melanogaster GN=r PE=1 SV=3
Length = 2224
Score = 187 bits (474), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 134/214 (62%), Gaps = 15/214 (7%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISG-- 61
VFQTGMVGY EA+TD SY QILVLTYPLIGNYGVP D+DEHG+ +FE W+ G
Sbjct: 39 VFQTGMVGYTEALTDRSYSGQILVLTYPLIGNYGVPAPDEDEHGLPLHFE----WMKGVV 94
Query: 62 ----LIVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHG 117
L+VG++ + HW TL +WL+ H +P + ++DTR LTK +RE G + GKIV+
Sbjct: 95 QATALVVGEVAEEAFHWRKWKTLPDWLKQHKVPGIQDIDTRALTKKLREQGSMLGKIVYE 154
Query: 118 SVAPLAVTVEDLVFVDPNRGNLVDQVSTKEVVTY-NPTGSV-HLCVVDCGLKYNQLRCLI 175
P + FVDPN NL + S KE Y NP G + ++DCGLK NQLRCL+
Sbjct: 155 K--PPVEGLPKSSFVDPNVRNLAKECSVKERQVYGNPNGKGPRIAILDCGLKLNQLRCLL 212
Query: 176 QRGAKLSVIPWNHPIKVPQGWQPLFTNANDGTNE 209
QRGA ++++PW+ ++ Q + LF + G E
Sbjct: 213 QRGASVTLLPWSARLEDEQ-FDALFLSNGPGNPE 245
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 72/149 (48%), Gaps = 21/149 (14%)
Query: 165 GLKYNQLRCLIQRGAKLSVIPWNHPIKV-----PQGWQPLFTNANDGTNEGIVHESLPFF 219
G + + L CL + + + NH V P GW LF NANDGTNEGIVH S P+F
Sbjct: 289 GNRGHNLPCLHRATGRCLMTSQNHGYAVDLEQLPDGWSELFVNANDGTNEGIVHASKPYF 348
Query: 220 SVQFHPEHTAGPADLELLFDIFINAVRDSKTRTP------VPPIRKTIYDTLVPKDEALI 273
SVQFHPEH AGP D E LFD+F+ +++ P + P I V + LI
Sbjct: 349 SVQFHPEHHAGPQDTEFLFDVFMESIQQKDLTIPQLIEQRLRPTTPAIDSAPVMPRKVLI 408
Query: 274 ----------AKSFQTPKKTSVRKMREDN 292
A F +++ MRE N
Sbjct: 409 LGSGGLSIGQAGEFDYSGSQAIKAMRESN 437
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 273 IAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTYNATAHDLAVKETV 332
IAK ++ + +VR R++ GIRP+ KQIDT+A E PA TNYLY TYN + HD+
Sbjct: 890 IAKYIKS-TELAVRHQRQEFGIRPHVKQIDTVAGEWPASTNYLYHTYNGSEHDVDFPGGH 948
Query: 333 SIIKG 337
+I+ G
Sbjct: 949 TIVVG 953
>sp|P87183|CARA_HYPVI Carbamoyl-phosphate synthase arginine-specific small chain
OS=Hypocrea virens GN=cpa1 PE=3 SV=1
Length = 453
Score = 175 bits (443), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 124/205 (60%), Gaps = 5/205 (2%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF T +VGYPE+MTDPSY QILV T PLIGNYGVP ++DE+ +LKYFES I +G++
Sbjct: 81 VFTTSLVGYPESMTDPSYRGQILVFTQPLIGNYGVPSNERDEYNLLKYFESPHIQCAGVV 140
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
V D+ SHW + +L EW P DTR + H+RE G +I S+
Sbjct: 141 VSDVALNYSHWTAVESLSEWCAREASPPSPASDTRAIVTHLREQGSSLARI---SIGDEY 197
Query: 124 VTVEDLVFVDPNRGNLVDQVSTKE-VVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKLS 182
ED FVDP + NLV +VSTK V +P +H+ ++DCG+K N LR L+ RGA L+
Sbjct: 198 DADEDESFVDPGQINLVKRVSTKAPFVIESPGADLHVALIDCGVKENILRQLVSRGASLT 257
Query: 183 VIPWNHPI-KVPQGWQPLFTNANDG 206
V P+N+PI KV + +F + G
Sbjct: 258 VFPYNYPIHKVADHFDGVFISNGPG 282
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSKT 250
+P ++ F N NDG+NEG++H + P FS QFHPE GP D LF+ ++ VR +K+
Sbjct: 361 LPNDFKEYFVNLNDGSNEGMMHRTRPIFSTQFHPEAKGGPMDSSYLFEKYLENVRAAKS 419
>sp|Q6C9Y4|CARA_YARLI Carbamoyl-phosphate synthase arginine-specific small chain
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CPA1
PE=3 SV=1
Length = 448
Score = 174 bits (442), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 90/192 (46%), Positives = 119/192 (61%), Gaps = 8/192 (4%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPP-QDKDEHGILKYFESHRIWISGL 62
VF TGMVGYPE+MTDPSY QILV T PLIGNYGVP ++ D G++KYFES I G+
Sbjct: 68 VFSTGMVGYPESMTDPSYRGQILVFTQPLIGNYGVPSGKETDPFGLIKYFESPHIQCIGI 127
Query: 63 IVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPL 122
+V D SHW + +LGEW + + A++ VDTR + ++RE G G+I +V
Sbjct: 128 VVADAALKYSHWTAVESLGEWCKREGVAAISGVDTRAIVTYLREQGSSLGRI---TVGEE 184
Query: 123 AVTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSV----HLCVVDCGLKYNQLRCLIQRG 178
ED FVDP NLV +VSTK+ + V H+ V+DCG+K N LR L+ RG
Sbjct: 185 YDAEEDAAFVDPGEINLVRRVSTKQPFHVSAAADVENPLHIAVIDCGVKENILRSLVSRG 244
Query: 179 AKLSVIPWNHPI 190
A ++V P+ +PI
Sbjct: 245 ASITVFPYEYPI 256
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAV 245
+P ++P F N ND +NEG++H P FS QFHPE GP D +LFD ++ V
Sbjct: 356 LPAEFKPYFINLNDQSNEGMIHTEKPIFSTQFHPEAKGGPLDTSILFDKYLGQV 409
>sp|P07259|PYR1_YEAST Protein URA2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=URA2 PE=1 SV=5
Length = 2214
Score = 174 bits (441), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 135/231 (58%), Gaps = 31/231 (13%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPP---QDKDEHGILKYFESHRIWIS 60
VFQTGMVGYPE++TDPSY QILV+TYPL+GNYGVP +D+ + +YFES+RI I+
Sbjct: 48 VFQTGMVGYPESVTDPSYEGQILVITYPLVGNYGVPDMHLRDELVEELPRYFESNRIHIA 107
Query: 61 GLIVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGK------- 113
GL++ D SH+ + S+LG+WL+ IPA+ VDTR LTKH+R+ G + G+
Sbjct: 108 GLVISHYTDEYSHYLAKSSLGKWLQNEGIPAVYGVDTRSLTKHLRDAGSMLGRLSLEKSG 167
Query: 114 ----IVHGSVAPLAVTVEDLVFVDPNRGNLVDQVSTKEVVTY-------------NPTGS 156
I S A V + +VDPN NLV +VS E Y P G
Sbjct: 168 SDRTISRSSSWRSAFDVPE--WVDPNVQNLVSKVSINEPKLYVPPADNKHIELQTGPDGK 225
Query: 157 V-HLCVVDCGLKYNQLRCLIQRGAKLSVIPWNHPIKVPQGWQPLFTNANDG 206
V + +D G+KYNQ+RC I+RG +L V+PWN+ + + LF + G
Sbjct: 226 VLRILAIDVGMKYNQIRCFIKRGVELKVVPWNYDF-TKEDYDGLFISNGPG 275
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 56/98 (57%), Gaps = 5/98 (5%)
Query: 165 GLKYNQLRCLIQRGAKLSVIPWNHPIKV-----PQGWQPLFTNANDGTNEGIVHESLPFF 219
G + + + C + + NH V GW+PLF NAND +NEGI H LP+F
Sbjct: 322 GNRGHNIPCTSTISGRCYITSQNHGFAVDVDTLTSGWKPLFVNANDDSNEGIYHSELPYF 381
Query: 220 SVQFHPEHTAGPADLELLFDIFINAVRDSKTRTPVPPI 257
SVQFHPE T GP D E LFD+FI AV++ K + PI
Sbjct: 382 SVQFHPESTPGPRDTEFLFDVFIQAVKEFKYTQVLKPI 419
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Query: 269 DEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTYNATAHDLA 327
D+ IA+ F + ++R++R++ GI P+ KQIDT+AAE PA TNYLY+TYNA +HDL+
Sbjct: 919 DDRQIAR-FLDSNEVAIRRLRKEYGITPFVKQIDTVAAEFPAYTNYLYMTYNADSHDLS 976
>sp|Q0U5H7|CARA_PHANO Carbamoyl-phosphate synthase arginine-specific small chain
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=CPA1 PE=3 SV=1
Length = 476
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 89/205 (43%), Positives = 126/205 (61%), Gaps = 5/205 (2%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF T +VGYPE+MTDPSY QILV T PLIGNYGVP +DEHG+L+YFES I SG++
Sbjct: 76 VFTTSLVGYPESMTDPSYRGQILVFTQPLIGNYGVPSSARDEHGLLRYFESPNIQASGIV 135
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
V D SHW + +L +W +PA++ VDTR + ++RE G +I +V
Sbjct: 136 VQDYALKHSHWTAVESLAQWCAREGVPAISGVDTREVVTYLREQGSSLARI---TVGEEY 192
Query: 124 VTVEDLVFVDPNRGNLVDQVSTKEVVTYNPT-GSVHLCVVDCGLKYNQLRCLIQRGAKLS 182
ED ++DP NLV +VSTK + + G +H+ ++DCG+K N LR L+ RGA ++
Sbjct: 193 DADEDEAYIDPEAINLVRRVSTKAPFHVSSSLGDMHVALIDCGVKENILRSLVSRGASVT 252
Query: 183 VIPWNHPI-KVPQGWQPLFTNANDG 206
P+++PI KV + +F + G
Sbjct: 253 CFPFDYPIHKVAHHFDGVFISNGPG 277
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 179 AKLSVIPWNH-----PIKVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPAD 233
K + NH P + W+ FTN ND +NEG++H S P FS QFHPE GP D
Sbjct: 338 GKCHITSQNHGYAVDPTTLTSEWKEYFTNLNDQSNEGLIHASRPIFSAQFHPEAKGGPMD 397
Query: 234 LELLFDIFINAVRDSK 249
LFD +I V+ K
Sbjct: 398 SSYLFDKYIQNVQRYK 413
>sp|Q91293|CPSM_LITCT Carbamoyl-phosphate synthase [ammonia], mitochondrial OS=Lithobates
catesbeiana PE=2 SV=1
Length = 1496
Score = 170 bits (431), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/187 (45%), Positives = 117/187 (62%), Gaps = 10/187 (5%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVP-PQDKDEHGILKYFESHRIWISGL 62
+F TG+ GY EA+TDPSYH QIL LT P+IGN G P + +D +G++KY ES I SGL
Sbjct: 67 IFNTGLGGYVEAVTDPSYHGQILTLTNPIIGNGGAPDTKARDAYGLMKYIESENIQASGL 126
Query: 63 IVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIREC-GVVSGKIVHGSVAP 121
+V D SHW + +L EWL +PAL +DTR L K IR+ G V GKI
Sbjct: 127 LVLDYSHEYSHWGAVKSLSEWLHEEKVPALCGIDTRMLAKKIRDNKGAVLGKIEFEG--- 183
Query: 122 LAVTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKL 181
+ + F+DPN+ NL+ +VSTKE + V + VDCG+K+N +R L++RGA++
Sbjct: 184 -----QPVEFIDPNKRNLIAEVSTKETKVFGKGNPVRIVAVDCGVKHNIIRQLVKRGAEV 238
Query: 182 SVIPWNH 188
++PWNH
Sbjct: 239 HLVPWNH 245
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 61/112 (54%), Gaps = 11/112 (9%)
Query: 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSKTR 251
+P GW+PLF N ND +NEGI+HE+ P F+ QFHPE GP D E LFD++++ ++ K
Sbjct: 342 LPAGWKPLFVNINDQSNEGIMHETKPIFTSQFHPEANPGPVDTEFLFDVYMSLIKKGKGT 401
Query: 252 T-----PVPPI---RKTIYDTLVPKDEALI---AKSFQTPKKTSVRKMREDN 292
T P P + R + L+ L A F +V+ M+E+N
Sbjct: 402 TLTSVMPKPALQSKRIDVAKVLILGSGGLSIGQAGEFDYSGSQAVKAMKEEN 453
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 35/45 (77%)
Query: 282 KTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTYNATAHDL 326
+T R++R + ++P+ KQIDTLAAE+PA TNYLYLTYN HD+
Sbjct: 922 ETQTRELRLNKNVKPWVKQIDTLAAEYPAITNYLYLTYNGQEHDI 966
>sp|Q1DUF5|CARA_COCIM Carbamoyl-phosphate synthase arginine-specific small chain
OS=Coccidioides immitis (strain RS) GN=CPA1 PE=3 SV=1
Length = 468
Score = 169 bits (427), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/205 (45%), Positives = 128/205 (62%), Gaps = 5/205 (2%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF T +VGYPE+++DPSY QILV T PLIGNYGVP +KDE+G+LKYFES + G++
Sbjct: 73 VFTTSLVGYPESLSDPSYRGQILVFTQPLIGNYGVPSAEKDENGLLKYFESPSLQAVGVV 132
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
V D+ + SHW + +L EW +PA++ VDTR + ++RE G KI SV
Sbjct: 133 VADVAEKYSHWTAVESLSEWCIREGVPAISGVDTRAIVTYLREQGSSLAKI---SVGEEY 189
Query: 124 VTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGS-VHLCVVDCGLKYNQLRCLIQRGAKLS 182
+D FVDP + NLV +VSTK NP S H+ V+DCG+K N LR L+ RGA ++
Sbjct: 190 DADQDEAFVDPEQINLVAKVSTKAPFHINPGNSNAHVAVIDCGVKENILRSLVHRGASIT 249
Query: 183 VIPWNHPI-KVPQGWQPLFTNANDG 206
V P++ PI KV + +F + G
Sbjct: 250 VFPYDFPIQKVAHHFDGVFISNGPG 274
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 40/58 (68%)
Query: 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSK 249
+P W+P F N ND +NEG++H++ P FS QFHPE GP D LFDI++++V+ K
Sbjct: 353 LPSDWKPYFVNLNDSSNEGMIHKTRPIFSTQFHPEAKGGPLDSSYLFDIYLDSVQKYK 410
>sp|Q09794|PYR1_SCHPO Protein ura1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ura1 PE=1 SV=1
Length = 2244
Score = 168 bits (426), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 128/210 (60%), Gaps = 25/210 (11%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQD-KDE-HGILKYFESHRIWISG 61
VFQTGMVGYPE++TDPSY QILV T+P +GNYGVP + DE G+ KYFES++I ++
Sbjct: 85 VFQTGMVGYPESLTDPSYRGQILVFTFPTVGNYGVPDRRILDEISGLPKYFESNQIHVAA 144
Query: 62 LIVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIV----HG 117
+I+ SH+ + S+LGEWL+ IP + +DTR LTK IR+ G + G+++
Sbjct: 145 IIISSYSQNYSHFLAHSSLGEWLKEQGIPGIFGIDTRALTKKIRDQGSMLGRLLIQKDES 204
Query: 118 SVAPLAVT---------VEDLVFVDPNRGNLVDQVSTKEVVTYNPTGS----------VH 158
+ P ++T ED+ + +PN NL QVS KE Y P + +
Sbjct: 205 PINPSSITGLGKDWSTAFEDIPWKNPNTENLTSQVSIKEPKLYEPHPTTAIKKADGKIIR 264
Query: 159 LCVVDCGLKYNQLRCLIQRGAKLSVIPWNH 188
+ V+D G+KYNQ+RC + RG +L V+PW++
Sbjct: 265 ILVIDVGMKYNQIRCFLNRGVELLVVPWDY 294
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 165 GLKYNQLRCLIQRGAKLSVIPWNHPIKV-----PQGWQPLFTNANDGTNEGIVHESLPFF 219
G + + + C + + NH V GW+ LF NANDG+NEGI + PFF
Sbjct: 358 GNRGHNIPCTCMISGRCYITSQNHGYAVDASSLSNGWKELFVNANDGSNEGIYNTEYPFF 417
Query: 220 SVQFHPEHTAGPADLELLFDIFINAVRDSKTRTPVPPIR 258
SVQFHPE T GP D E LFD+FI+ V+ S + P +
Sbjct: 418 SVQFHPESTPGPRDTEFLFDVFIDVVKRSADAKSLQPFK 456
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 42/62 (67%)
Query: 276 SFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTYNATAHDLAVKETVSII 335
+F + +VR++R + GIRP+ KQIDT+AAE PA TNYLY TYNA HD+ + ++
Sbjct: 959 AFMNSTELAVRRIRTEAGIRPFVKQIDTVAAEFPAFTNYLYTTYNAVEHDIHFNDKGVMV 1018
Query: 336 KG 337
G
Sbjct: 1019 LG 1020
>sp|P20054|PYR1_DICDI Protein PYR1-3 OS=Dictyostelium discoideum GN=pyr1-3 PE=1 SV=3
Length = 2225
Score = 167 bits (424), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 121/199 (60%), Gaps = 17/199 (8%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPP-QDKD-EHGILKYFESHRIWISG 61
VF TGMVGY E+++DPSY QILV ++PLIGNYGVP +++D E G+ FES + +
Sbjct: 35 VFSTGMVGYNESISDPSYTGQILVFSFPLIGNYGVPSFRERDPESGLAVNFESDKAHVQA 94
Query: 62 LIVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAP 121
+I + CD SHW + +L EWL+ NIP L +DTR L IRE G + GK++ G
Sbjct: 95 IICSEYCDEYSHWAAEKSLSEWLKESNIPGLYGIDTRALITKIREKGSLKGKVIIGDFDE 154
Query: 122 LAVTVEDLVFVDPNRGNLVDQVSTKEVVTYNP------TG----SVHLCVVDCGLKYNQL 171
+ ED+ N NLV +VSTKE+ Y TG + + V+DCG+K NQ+
Sbjct: 155 SKLEFEDI-----NLRNLVAEVSTKEIKEYKAAENNKKTGEKRKNKKVIVLDCGIKNNQI 209
Query: 172 RCLIQRGAKLSVIPWNHPI 190
RCL+ RG L V+PW++ +
Sbjct: 210 RCLLNRGVDLKVVPWDYDV 228
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
Query: 173 CLIQRGAKLSVIPWNHPIKVPQ-------GWQPLFTNANDGTNEGIVHESLPFFSVQFHP 225
C+ Q + + NH + GW+ F NAND +NEGI HES P+FSVQFHP
Sbjct: 303 CVDQISGRCHITSQNHGFVIDSNSLPAGSGWKTYFINANDASNEGIYHESKPWFSVQFHP 362
Query: 226 EHTAGPADLELLFDIFINAV 245
E AGP D E LFD F++ V
Sbjct: 363 EAMAGPTDTEYLFDNFVDNV 382
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 273 IAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTYNATAHDLAVKETV 332
IA++ T + +VR R+ GI P K IDT+AAE PAQ NYLY+TYN +D+ + E
Sbjct: 890 IARAVGTTE-LNVRDYRKKMGIIPCTKHIDTVAAEFPAQNNYLYMTYNGETNDVNINEKS 948
Query: 333 SIIKG 337
I G
Sbjct: 949 YITLG 953
>sp|Q2U913|CARA_ASPOR Carbamoyl-phosphate synthase arginine-specific small chain
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=cpa1 PE=3 SV=1
Length = 450
Score = 167 bits (424), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 93/207 (44%), Positives = 131/207 (63%), Gaps = 9/207 (4%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF T +VGYPE++TDPSY QILV T PLIGNYGVP +KD+HG+LKYFES + +G++
Sbjct: 68 VFTTSLVGYPESLTDPSYRGQILVFTQPLIGNYGVPSAEKDQHGLLKYFESPHLQAAGVV 127
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
V D+ + SHW + +LGEW +PA++ VDTR + ++RE G +I +V
Sbjct: 128 VADVAEQYSHWTAVQSLGEWCAREGVPAISGVDTRAIVTYLREQGSSLARI---TVGEEY 184
Query: 124 VTVEDLVFVDPNRGNLVDQVSTK---EVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAK 180
+D FVDP + +LV QVSTK V +P H+ V+DCG+K N LR L+ RGA
Sbjct: 185 DADQDEAFVDPEQIHLVRQVSTKAPFHVSAADP--QCHVAVIDCGVKENILRSLVSRGAS 242
Query: 181 LSVIPWNHPI-KVPQGWQPLFTNANDG 206
++V P+++PI KV + +F + G
Sbjct: 243 ITVFPYDYPIHKVAHHFDGVFISNGPG 269
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSK-T 250
+P W+P F N ND +NEG++H++ P FS QFHPE GP D LFDI++++VR K +
Sbjct: 348 LPSDWKPYFVNLNDSSNEGMIHKTRPIFSTQFHPEAKGGPLDSSYLFDIYLDSVRKYKAS 407
Query: 251 RTPVPPIRKTI 261
++ P R ++
Sbjct: 408 QSAFHPTRDSL 418
>sp|P31327|CPSM_HUMAN Carbamoyl-phosphate synthase [ammonia], mitochondrial OS=Homo
sapiens GN=CPS1 PE=1 SV=2
Length = 1500
Score = 167 bits (424), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 117/186 (62%), Gaps = 9/186 (4%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDK-DEHGILKYFESHRIWISGL 62
VF TG+ GYPEA+TDP+Y QIL + P+IGN G P DE G+ KY ES+ I +SGL
Sbjct: 72 VFNTGLGGYPEAITDPAYKGQILTMANPIIGNGGAPDTTALDELGLSKYLESNGIKVSGL 131
Query: 63 IVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPL 122
+V D +HW + +LG+WL+ +PA+ VDTR LTK IR+ G + GKI
Sbjct: 132 LVLDYSKDYNHWLATKSLGQWLQEEKVPAIYGVDTRMLTKIIRDKGTMLGKIEFEG---- 187
Query: 123 AVTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKLS 182
+ + FVDPN+ NL+ +VSTK+V Y + VDCG+K N +R L++RGA++
Sbjct: 188 ----QPVDFVDPNKQNLIAEVSTKDVKVYGKGNPTKVVAVDCGIKNNVIRLLVKRGAEVH 243
Query: 183 VIPWNH 188
++PWNH
Sbjct: 244 LVPWNH 249
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 62/112 (55%), Gaps = 11/112 (9%)
Query: 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSKTR 251
+P GW+PLF N ND TNEGI+HES PFF+VQFHPE T GP D E LFD F + ++ K
Sbjct: 345 LPAGWKPLFVNVNDQTNEGIMHESKPFFAVQFHPEVTPGPIDTEYLFDSFFSLIKKGKAT 404
Query: 252 T-----PVPPI---RKTIYDTLVPKDEALI---AKSFQTPKKTSVRKMREDN 292
T P P + R + L+ L A F +V+ M+E+N
Sbjct: 405 TITSVLPKPALVASRVEVSKVLILGSGGLSIGQAGEFDYSGSQAVKAMKEEN 456
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 282 KTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTYNATAHDL 326
+ R++R I P+ KQIDTLAAE+P+ TNYLY+TYN HD+
Sbjct: 925 EAQTRELRLKKNIHPWVKQIDTLAAEYPSVTNYLYVTYNGQEHDV 969
>sp|A2R9B9|CARA_ASPNC Carbamoyl-phosphate synthase arginine-specific small chain
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=cpa1 PE=3 SV=1
Length = 453
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 131/207 (63%), Gaps = 9/207 (4%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF T +VGYPE++TDPSY QILV T PLIGNYGVP ++D+HG+LKYFES + +G++
Sbjct: 67 VFTTSLVGYPESLTDPSYRGQILVFTQPLIGNYGVPSAERDQHGLLKYFESPNLQAAGVV 126
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
V D+ + SHW + +LGEW +PA++ VDTR + ++RE G +I +V
Sbjct: 127 VADVAEQYSHWTAVESLGEWCAREGVPAISGVDTRAIVTYLREQGSSLARI---TVGEEY 183
Query: 124 VTVEDLVFVDPNRGNLVDQVSTK---EVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAK 180
+D FVDP + +LV QVSTK V +P H+ V+DCG+K N LR L+ RGA
Sbjct: 184 DADQDEAFVDPEQIHLVRQVSTKAPFHVSAADP--QCHVAVIDCGVKENILRSLVSRGAS 241
Query: 181 LSVIPWNHPI-KVPQGWQPLFTNANDG 206
++V P+++PI KV + +F + G
Sbjct: 242 ITVFPFDYPIHKVAHHFDGVFISNGPG 268
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%)
Query: 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAV 245
+P W+P F N ND +NEG++H++ P FS QFHPE GP D LFDI++++V
Sbjct: 347 LPSDWKPYFVNLNDSSNEGMIHKTRPIFSTQFHPEAKGGPLDSSYLFDIYLDSV 400
>sp|Q4WU09|CARA_ASPFU Carbamoyl-phosphate synthase arginine-specific small chain
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=cpa1 PE=3 SV=1
Length = 453
Score = 166 bits (419), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 130/207 (62%), Gaps = 9/207 (4%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF T +VGYPE++TDPSY QILV T PLIGNYGVP ++DEHG+LKYFES + +G++
Sbjct: 67 VFTTSLVGYPESLTDPSYRGQILVFTQPLIGNYGVPSAERDEHGLLKYFESPNLQAAGVV 126
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
V D+ + SHW + +LGEW +PA++ VDTR + ++RE G +I +V
Sbjct: 127 VADVAEQYSHWTAVESLGEWCAREGVPAISGVDTRAIVTYLRERGSSLARI---TVGEEY 183
Query: 124 VTVEDLVFVDPNRGNLVDQVSTK---EVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAK 180
+D F DP + +LV QVSTK V +P H+ V+DCG+K N LR L+ RGA
Sbjct: 184 DADQDEAFTDPEQIHLVRQVSTKAPFHVSAADP--QCHVAVIDCGVKENILRSLVSRGAG 241
Query: 181 LSVIPWNHPI-KVPQGWQPLFTNANDG 206
++V P+++PI KV + +F + G
Sbjct: 242 ITVFPFDYPIHKVAHHFDGVFISNGPG 268
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%)
Query: 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSKT 250
+P W+P F N ND +NEG++H+S P FS QFHPE GP D LFDI+I++V+ K
Sbjct: 347 LPSDWKPYFVNLNDSSNEGMIHKSRPIFSTQFHPEAKGGPLDSSYLFDIYIDSVKKYKA 405
>sp|Q8C196|CPSM_MOUSE Carbamoyl-phosphate synthase [ammonia], mitochondrial OS=Mus
musculus GN=Cps1 PE=1 SV=2
Length = 1500
Score = 165 bits (418), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 118/186 (63%), Gaps = 9/186 (4%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQD-KDEHGILKYFESHRIWISGL 62
VF TG+ GYPEA+TDP+Y QIL + P+IGN G P +DE G+ KY ES I ++GL
Sbjct: 72 VFNTGLGGYPEALTDPAYKGQILTMANPIIGNGGAPDTTARDELGLNKYMESDGIKVAGL 131
Query: 63 IVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPL 122
+V + + +HW + +LG+WL+ +PA+ VDTR LTK IR+ G + GKI
Sbjct: 132 LVLNYSNDYNHWLATKSLGQWLQEEKVPAIYGVDTRMLTKIIRDKGTMLGKIEFEG---- 187
Query: 123 AVTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKLS 182
+ + FVDPN+ NL+ +VSTK+V + + VDCG+K N +R L++RGA++
Sbjct: 188 ----QSVDFVDPNKQNLIAEVSTKDVKVFGKGNPTKVVAVDCGIKNNVIRLLVKRGAEVH 243
Query: 183 VIPWNH 188
++PWNH
Sbjct: 244 LVPWNH 249
Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 62/112 (55%), Gaps = 11/112 (9%)
Query: 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSKTR 251
+P GW+PLF N ND TNEGI+HES PFF+VQFHPE + GP D E LFD F + ++ K
Sbjct: 345 LPAGWKPLFVNVNDQTNEGIMHESKPFFAVQFHPEVSPGPTDTEYLFDSFFSLIKKGKGT 404
Query: 252 T-----PVPPI---RKTIYDTLVPKDEALI---AKSFQTPKKTSVRKMREDN 292
T P P + R + L+ L A F +V+ M+E+N
Sbjct: 405 TITSVLPKPALVASRVEVSKVLILGSGGLSIGQAGEFDYSGSQAVKAMKEEN 456
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 282 KTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTYNATAHDLAVKE 330
+ R++R I P+ KQIDTLAAE+P+ TNYLY+TYN HD+ E
Sbjct: 925 EAQTRELRLKKNIHPWVKQIDTLAAEYPSVTNYLYVTYNGQEHDIKFDE 973
>sp|A1CZ92|CARA_NEOFI Carbamoyl-phosphate synthase arginine-specific small chain
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=cpa1 PE=3 SV=1
Length = 453
Score = 165 bits (418), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 91/207 (43%), Positives = 130/207 (62%), Gaps = 9/207 (4%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF T +VGYPE++TDPSY QILV T PLIGNYGVP ++D+HG+LKYFES + +G++
Sbjct: 67 VFTTSLVGYPESLTDPSYRGQILVFTQPLIGNYGVPSAERDQHGLLKYFESPNLQAAGVV 126
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
V D+ + SHW + +LGEW +PA++ VDTR + ++RE G +I +V
Sbjct: 127 VADVAEQYSHWTAVESLGEWCAREGVPAISGVDTRAIVTYLREQGSSLARI---TVGEEY 183
Query: 124 VTVEDLVFVDPNRGNLVDQVSTK---EVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAK 180
+D F DP + +LV QVSTK V +P H+ V+DCG+K N LR L+ RGA
Sbjct: 184 DADQDEAFTDPEQIHLVRQVSTKAPFHVSAADP--QCHVAVIDCGVKENILRSLVSRGAS 241
Query: 181 LSVIPWNHPI-KVPQGWQPLFTNANDG 206
++V P+++PI KV + +F + G
Sbjct: 242 ITVFPFDYPIHKVAHHFDGVFISNGPG 268
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSK 249
+P W+P F N ND +NEG++H+S P FS QFHPE GP D LFDI+I++V+ K
Sbjct: 347 LPSDWKPYFVNLNDSSNEGMIHKSRPIFSTQFHPEAKGGPLDSSYLFDIYIDSVKKYK 404
>sp|O93937|PYR1_EMENI Protein pyrABCN OS=Emericella nidulans (strain FGSC A4 / ATCC 38163
/ CBS 112.46 / NRRL 194 / M139) GN=pyrABCN PE=3 SV=2
Length = 2275
Score = 165 bits (417), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 96/230 (41%), Positives = 139/230 (60%), Gaps = 27/230 (11%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDK-DE--HGILKYFESHRIWIS 60
VFQTGMVGYPE++TDPSY QILV+T+PL+GNYGVP ++ DE + K+FES I I+
Sbjct: 86 VFQTGMVGYPESITDPSYRGQILVITFPLVGNYGVPSRETMDELLKTLPKHFESTEIHIA 145
Query: 61 GLIVGDMC-DTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKI----- 114
L+V + SH+ + S+LG+WL+ +PA+ VDTR LTK IR+ G + G++
Sbjct: 146 ALVVATYAGENYSHFLAESSLGQWLKEQGVPAIHGVDTRALTKRIRQKGSMLGRLLLHKA 205
Query: 115 -VHGSVAPLA-----VTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHL--------- 159
V + A LA + E + +VDPN NLV +VS +E ++P +V L
Sbjct: 206 DVAETDAALAQDTWKSSFEQIDWVDPNTKNLVSEVSIREPKLFSPPENVALKHPSSRPIR 265
Query: 160 -CVVDCGLKYNQLRCLIQRGAKLSVIPWNH--PIKVPQGWQPLFTNANDG 206
+D GLK+NQLRCL+ RG ++ V+PW++ P + + LF + G
Sbjct: 266 VLCLDVGLKFNQLRCLVARGVEVLVVPWDYDFPTLAGKDYDGLFVSNGPG 315
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 45/57 (78%)
Query: 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDS 248
+P WQ LF NANDG+NEGI H S P+FSVQFHPE T GP D E LFD+FINA++D+
Sbjct: 394 LPSDWQELFVNANDGSNEGIRHVSRPYFSVQFHPESTPGPRDTEYLFDVFINAIKDT 450
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 42/61 (68%)
Query: 277 FQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTYNATAHDLAVKETVSIIK 336
F + + ++R++R + GI P KQIDT+AAE P+ TNYLYLTYNA+ HD+ + ++
Sbjct: 966 FLSSNELAIRRLRVEAGIIPIVKQIDTVAAEFPSVTNYLYLTYNASEHDVRFDDNGIMVL 1025
Query: 337 G 337
G
Sbjct: 1026 G 1026
>sp|A1CA18|CARA_ASPCL Carbamoyl-phosphate synthase arginine-specific small chain
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=cpa1 PE=3 SV=1
Length = 455
Score = 164 bits (415), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 91/207 (43%), Positives = 130/207 (62%), Gaps = 9/207 (4%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF T +VGYPE++TDPSY QILV T PLIGNYGVP ++D+HG+LKYFES + +G++
Sbjct: 67 VFTTSLVGYPESLTDPSYRGQILVFTQPLIGNYGVPSAERDQHGLLKYFESPHLQAAGVV 126
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
V D+ + SHW + +LGEW +PA++ VDTR + ++RE G +I +V
Sbjct: 127 VADVAEQYSHWTAVESLGEWCAREGVPAISGVDTRAIVTYLREQGSSLARI---TVGEEY 183
Query: 124 VTVEDLVFVDPNRGNLVDQVSTK---EVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAK 180
+D F DP + +LV QVSTK V +P H+ V+DCG+K N LR L+ RGA
Sbjct: 184 DADQDEAFTDPEQIHLVRQVSTKAPFHVSAADP--QCHVAVIDCGVKENILRSLVSRGAS 241
Query: 181 LSVIPWNHPI-KVPQGWQPLFTNANDG 206
++V P+++PI KV + +F + G
Sbjct: 242 ITVFPFDYPIHKVAHHFDGVFISNGPG 268
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 40/59 (67%)
Query: 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSKT 250
+P W+P F N ND +NEG++H+S P FS QFHPE GP D LFDI+I++VR K
Sbjct: 347 LPSDWKPYFVNLNDSSNEGMIHKSRPIFSTQFHPEAKGGPLDSSYLFDIYIDSVRKYKA 405
>sp|Q5BB37|CARA_EMENI Carbamoyl-phosphate synthase arginine-specific small chain
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=cpa-1 PE=2 SV=2
Length = 454
Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/207 (43%), Positives = 129/207 (62%), Gaps = 9/207 (4%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF T +VGYPE++TDPSY QILV T PLIGNYGVP ++D HG+LKYFES + +G++
Sbjct: 67 VFTTSLVGYPESLTDPSYRGQILVFTQPLIGNYGVPSTERDRHGLLKYFESPNLQAAGVV 126
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
V D+ + SHW + +LGEW +PA++ VDTR + ++RE G +I +V
Sbjct: 127 VADVAEQYSHWTAVQSLGEWCAREGVPAISGVDTRAIVTYLREQGSSLARI---TVGEEY 183
Query: 124 VTVEDLVFVDPNRGNLVDQVSTK---EVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAK 180
+D F DP + +LV QVSTK V +P H+ V+DCG+K N LR L+ RGA
Sbjct: 184 DADQDEAFTDPEQIHLVRQVSTKAPFHVSAADP--QCHVAVLDCGVKENILRSLVSRGAS 241
Query: 181 LSVIPWNHPI-KVPQGWQPLFTNANDG 206
++V P+++PI KV + +F + G
Sbjct: 242 ITVFPFDYPIHKVAHHFDGVFISNGPG 268
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
Query: 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSK-T 250
+P W+P F N ND +NEG++H+S P FS QFHPE GP D LFDI+I++V+ K +
Sbjct: 347 LPSDWKPYFVNLNDSSNEGMIHKSRPIFSTQFHPEAKGGPLDSSYLFDIYIDSVKKYKNS 406
Query: 251 RTPVPPIRKTIYD----TLVPKDEALIA 274
+ P R+TI L+PK+ +A
Sbjct: 407 QLAFHPSRETIPSPLLVDLLPKERVDVA 434
>sp|Q6BJG4|CARA_DEBHA Carbamoyl-phosphate synthase arginine-specific small chain
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=CPA1 PE=3 SV=1
Length = 429
Score = 162 bits (409), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 121/209 (57%), Gaps = 9/209 (4%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQD-KDEHGILKYFESHRIWISGL 62
VF T +VGYPE+MTDPSY QIL T PLIGNYGVP KDE +LK+ ES + G+
Sbjct: 62 VFTTSLVGYPESMTDPSYKGQILCFTQPLIGNYGVPSSTLKDEFNLLKHMESPSVQCIGI 121
Query: 63 IVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPL 122
+V D+ SHW + +L +W + + A++ VDTR+L ++RE G KI G
Sbjct: 122 VVADVALEYSHWTAVESLQQWCQRSGVAAISGVDTRQLVSYLREKGSSLAKITIGEEYD- 180
Query: 123 AVTVEDLVFVDPNRGNLVDQVSTKEVVTYNP----TGSVHLCVVDCGLKYNQLRCLIQRG 178
ED F DP NLV +VSTK + +H+ V+DCG K N LRCL++RG
Sbjct: 181 --ADEDAAFEDPGSVNLVHKVSTKAPFHISCPEKYAKGLHIAVLDCGAKENILRCLVERG 238
Query: 179 AKLSVIPWNHPI-KVPQGWQPLFTNANDG 206
A L+V P+N+PI K+ + +F + G
Sbjct: 239 ASLTVFPYNYPIDKIANKFDGIFISNGPG 267
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 32/51 (62%)
Query: 196 WQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVR 246
W+P FTN ND +NEG+ H+S P FS QFHPE GP D LFD F +
Sbjct: 351 WEPYFTNLNDLSNEGMKHKSRPIFSTQFHPEAKGGPLDTAFLFDKFFENIE 401
>sp|O60060|CARA_SCHPO Carbamoyl-phosphate synthase arginine-specific small chain
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=arg5 PE=3 SV=1
Length = 415
Score = 161 bits (408), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 83/190 (43%), Positives = 118/190 (62%), Gaps = 5/190 (2%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPP-QDKDEHGILKYFESHRIWISGL 62
VF T VGY E++TDPSY QQIL+ T PLIGNYGVP + +DE+G+L++FES I +G+
Sbjct: 72 VFTTSPVGYVESLTDPSYKQQILIFTQPLIGNYGVPDCKKRDENGLLRHFESPHIQCAGV 131
Query: 63 IVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPL 122
+V D SHW + +LGEW + A+ VDTR + +RE G KI S+
Sbjct: 132 VVNDYATKYSHWTAVESLGEWCAREGVAAITGVDTRAIVTFLREQGSSLAKI---SIGEE 188
Query: 123 AVTVEDLVFVDPNRGNLVDQVSTKE-VVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKL 181
+D F++P NLV QVST+E G +++ V+DCG+K N LR L+ RGA +
Sbjct: 189 YDANDDEAFINPEEVNLVSQVSTREPFFVSGGDGMLNIAVIDCGVKENILRSLVSRGASV 248
Query: 182 SVIPWNHPIK 191
+V P+++PI+
Sbjct: 249 TVFPFDYPIQ 258
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFIN-AVRDSKT 250
+P W+ +TN ND +NEGI H S P SVQFHPE GP D LFD +I A++ K+
Sbjct: 353 LPAEWKATWTNLNDQSNEGIAHVSRPISSVQFHPEARGGPMDTFYLFDNYIKEAIKYQKS 412
Query: 251 RT 252
RT
Sbjct: 413 RT 414
>sp|P07756|CPSM_RAT Carbamoyl-phosphate synthase [ammonia], mitochondrial OS=Rattus
norvegicus GN=Cps1 PE=1 SV=1
Length = 1500
Score = 161 bits (407), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 116/186 (62%), Gaps = 9/186 (4%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQD-KDEHGILKYFESHRIWISGL 62
VF TG+ GY EA+TDP+Y QIL + P+IGN G P +DE G+ KY ES I ++GL
Sbjct: 72 VFNTGLGGYSEALTDPAYKGQILTMANPIIGNGGAPDTTARDELGLNKYMESDGIKVAGL 131
Query: 63 IVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPL 122
+V + +HW + +LG+WL+ +PA+ VDTR LTK IR+ G + GKI
Sbjct: 132 LVLNYSHDYNHWLATKSLGQWLQEEKVPAIYGVDTRMLTKIIRDKGTMLGKIEFEG---- 187
Query: 123 AVTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKLS 182
+ + FVDPN+ NL+ +VSTK+V + + VDCG+K N +R L++RGA++
Sbjct: 188 ----QSVDFVDPNKQNLIAEVSTKDVKVFGKGNPTKVVAVDCGIKNNVIRLLVKRGAEVH 243
Query: 183 VIPWNH 188
++PWNH
Sbjct: 244 LVPWNH 249
Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 62/112 (55%), Gaps = 11/112 (9%)
Query: 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSKTR 251
+P GW+PLF N ND TNEGI+HES PFF+VQFHPE + GP D E LFD F + ++ K
Sbjct: 345 LPAGWKPLFVNVNDQTNEGIMHESKPFFAVQFHPEVSPGPTDTEYLFDSFFSLIKKGKGT 404
Query: 252 T-----PVPPI---RKTIYDTLVPKDEALI---AKSFQTPKKTSVRKMREDN 292
T P P + R + L+ L A F +V+ M+E+N
Sbjct: 405 TITSVLPKPALVASRVEVSKVLILGSGGLSIGQAGEFDYSGSQAVKAMKEEN 456
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 282 KTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTYNATAHDLAVKE 330
+ R++R I P+ KQIDTLAAE+P+ TNYLY+TYN HD+ E
Sbjct: 925 EAQTRELRLKKNIHPWVKQIDTLAAEYPSVTNYLYVTYNGQEHDIKFDE 973
>sp|Q5AML6|CARA_CANAL Carbamoyl-phosphate synthase arginine-specific small chain
OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
GN=CPA1 PE=3 SV=1
Length = 430
Score = 160 bits (406), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 86/209 (41%), Positives = 121/209 (57%), Gaps = 9/209 (4%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQD-KDEHGILKYFESHRIWISGL 62
VF T +VGYPE+MTDPSY QIL T PLIGNYGVP KD+ +LKY ES ++ G+
Sbjct: 63 VFTTSLVGYPESMTDPSYRGQILCFTQPLIGNYGVPSSTAKDQFNLLKYMESPKVQCIGI 122
Query: 63 IVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPL 122
+V D SHW + +L +W + + A+ VDTR+L ++R+ G G+I G
Sbjct: 123 VVADAALEYSHWTAVESLQQWCKRSGVAAITGVDTRQLVSYLRDKGSSLGRITIGEEYDA 182
Query: 123 AVTVEDLVFVDPNRGNLVDQVSTKE----VVTYNPTGSVHLCVVDCGLKYNQLRCLIQRG 178
ED F DP NLV +V+TK + +H+ V+DCG K N LRCL++RG
Sbjct: 183 D---EDAAFEDPGAINLVHKVTTKAPFHIACPPQYSKGIHIAVLDCGAKENILRCLVERG 239
Query: 179 AKLSVIPWNHPI-KVPQGWQPLFTNANDG 206
A L+V P+++PI K+ + +F + G
Sbjct: 240 ASLTVFPYDYPIDKIANKFDGIFISNGPG 268
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSKTR 251
+ + WQP FTN ND +NEG++H+ P FS QFHPE GP D LFD F + + K
Sbjct: 348 LSENWQPYFTNLNDLSNEGMIHKYQPIFSTQFHPEAKGGPLDTSFLFDKFFDNINVYKKS 407
Query: 252 TP--VPPIRKTIYDTLVPKDE 270
+PP+ ++ ++PK+
Sbjct: 408 NGLNLPPVENSLLVDILPKER 428
>sp|P07258|CARA_YEAST Carbamoyl-phosphate synthase arginine-specific small chain
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=CPA1 PE=1 SV=1
Length = 411
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 127/211 (60%), Gaps = 12/211 (5%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPP-QDKDEHGILKYFESHRIWISGL 62
VF T +VGYPE+MTDPSY QILV T PLIGNYGVP + +DE+ +LKYFES I + G+
Sbjct: 34 VFTTSLVGYPESMTDPSYRGQILVFTQPLIGNYGVPSGEARDEYNLLKYFESPHIHVVGI 93
Query: 63 IVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPL 122
+V + SHW + +L +W + + A+ VDTR L +++RE G G+I P+
Sbjct: 94 VVAEYAYQYSHWTAVESLAQWCQREGVAAITGVDTRELVQYLREQGSSLGRITLADHDPV 153
Query: 123 AVTVEDLVFVDPNRGNLVDQVSTKE---VVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGA 179
+V+P + NLV QV+TK+ V ++ ++DCG+K N +RCL++RGA
Sbjct: 154 P-------YVNPMKTNLVAQVTTKKPFHVSALPGKAKANVALIDCGVKENIIRCLVKRGA 206
Query: 180 KLSVIPWNHPIK-VPQGWQPLFTNANDGTNE 209
++V P+++ I+ V + +F + G E
Sbjct: 207 NVTVFPYDYRIQDVASEFDGIFLSNGPGNPE 237
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 196 WQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSKTRT 252
W+P F N ND +NEG++H P FS QFHPE GP D +LFD F + + + ++
Sbjct: 321 WKPYFVNLNDKSNEGMIHLQRPIFSTQFHPEAKGGPLDTAILFDKFFDNIEKYQLQS 377
>sp|Q6FQ30|CARA_CANGA Carbamoyl-phosphate synthase arginine-specific small chain
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=CPA1 PE=3 SV=1
Length = 392
Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 126/218 (57%), Gaps = 15/218 (6%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQD-KDEHGILKYFESHRIWISGL 62
VF T +VGYPE+MTDPSY QILV T PLIGNYGVP + +DE+ +LK+FES I ++G+
Sbjct: 30 VFTTSLVGYPESMTDPSYRGQILVFTQPLIGNYGVPSMEARDEYNLLKHFESSHIQVAGI 89
Query: 63 IVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKI-VHGSVAP 121
+V D SHW + +LG+W + + A+ VDTR + +++RE G +I V GS P
Sbjct: 90 VVADYAAQYSHWTAVESLGDWCKREGVAAITGVDTREIVQYLREQGSSQSRILVEGSDTP 149
Query: 122 LAVTVEDLVFVDPNRGNLVDQVSTKEVV---TYNPTGSVHLCVVDCGLKYNQLRCLIQRG 178
F D +LV +VSTKE + NP ++ V+DCG+K N +R L+ RG
Sbjct: 150 --------KFYDSMATHLVAEVSTKETLYVPAKNPVANI--AVIDCGVKVNIIRSLVARG 199
Query: 179 AKLSVIPWNHPIKVPQGWQPLFTNANDGTNEGIVHESL 216
A +++ P N I+ G +N N HE++
Sbjct: 200 ANVTIFPHNARIQDVAGQFDGVFLSNGPGNPETCHETI 237
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 189 PIKVPQG-WQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRD 247
P +PQ W+P F N ND +NEG++H + P FS QFHPE GP D LFD F N +
Sbjct: 307 PQTLPQEEWKPYFINLNDQSNEGMIHTTRPIFSTQFHPEAKGGPLDTMPLFDKFFNNIEC 366
Query: 248 SKT 250
KT
Sbjct: 367 YKT 369
>sp|Q752N9|CARA_ASHGO Carbamoyl-phosphate synthase arginine-specific small chain
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=CPA1 PE=3 SV=1
Length = 399
Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 122/192 (63%), Gaps = 12/192 (6%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQD-KDEHGILKYFESHRIWISGL 62
VF T +VGYP++MTDPSY QILV T PLIGNYGVP +D++G+LKY ES ++ +S +
Sbjct: 35 VFTTSLVGYPDSMTDPSYKGQILVFTQPLIGNYGVPDGSVRDQYGLLKYMESSKVHVSAI 94
Query: 63 IVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKI-VHGSVAP 121
+V + SHW + +LG+W R + A+ +DTR + +++RE G G++ V G+ A
Sbjct: 95 VVAEYAWEYSHWTAVQSLGDWCRKEGVAAIGGIDTRAVVQYLRESGSTMGRVDVEGAAAS 154
Query: 122 LAVTVEDLVFVDPNRGNLVDQVSTKE--VVTYNPTG-SVHLCVVDCGLKYNQLRCLIQRG 178
V VDP++ NLV QVSTK + P+ + + +VDCG+K N LRCL+ RG
Sbjct: 155 ARV-------VDPSKVNLVAQVSTKSPFYIPGKPSRVNYDVALVDCGVKENILRCLVVRG 207
Query: 179 AKLSVIPWNHPI 190
++V P+++ +
Sbjct: 208 VNVTVFPYDYDV 219
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 32/49 (65%)
Query: 198 PLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVR 246
PLF N ND +NEGI+H S P +S QFHPE GP D LFD ++ +R
Sbjct: 326 PLFVNLNDKSNEGIIHVSRPIYSTQFHPEGKGGPMDCSFLFDEYVERMR 374
>sp|Q6CIQ1|CARA_KLULA Carbamoyl-phosphate synthase arginine-specific small chain
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=CPA1 PE=3
SV=1
Length = 409
Score = 147 bits (372), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 115/193 (59%), Gaps = 15/193 (7%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPP-QDKDEHGILKYFESHRIWISGL 62
VF T +VGYPE+MTDPSY QILV T PLIGNYGVP +++D+ +LKY ES I + G+
Sbjct: 46 VFTTSLVGYPESMTDPSYKGQILVFTQPLIGNYGVPSGEERDDFNLLKYLESPHIHVRGI 105
Query: 63 IVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKI-VHGSVAP 121
+V + SHW + +L W + N+ A+ +DTR + + +RE G I V GS P
Sbjct: 106 VVAEYAWRYSHWTAVESLATWCQRENVTAIGGIDTRAVVQILREQGSSPSTITVQGSFIP 165
Query: 122 LAVTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSV----HLCVVDCGLKYNQLRCLIQR 177
+ E +LV VSTK+ SV ++ ++DCG+K N +RCL++R
Sbjct: 166 KPIKPET---------DLVKIVSTKKPFFVKALSSVKTPFNVALIDCGVKENIIRCLVER 216
Query: 178 GAKLSVIPWNHPI 190
GA ++V P+++PI
Sbjct: 217 GANVTVFPYDYPI 229
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 195 GWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFIN 243
G++P F N ND +NEG++H S P FS QFHPE GP D +LFD + +
Sbjct: 333 GFKPFFQNLNDKSNEGMIHVSRPIFSTQFHPEAKGGPRDSAVLFDRYFD 381
>sp|Q8U086|CARA_PYRFU Carbamoyl-phosphate synthase small chain OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=carA
PE=3 SV=1
Length = 371
Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 114/194 (58%), Gaps = 6/194 (3%)
Query: 1 MRY---VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRI 57
+RY VF T MVGYPE++TDPSY QIL+ T PL+G YGV + EHG+ ++ES I
Sbjct: 27 IRYGEVVFTTAMVGYPESLTDPSYKGQILIATNPLMGTYGVSSKSLKEHGLPLHYESDSI 86
Query: 58 WISGLIVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHG 117
+ G ++ + P+HW+S TL EWLR +P L VDTR L K IRE GV+ G IV
Sbjct: 87 KVEGFVISFLM-RPNHWSSEMTLDEWLRREGVPGLYGVDTRALVKKIREEGVMRGAIVT- 144
Query: 118 SVAPLAVTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTG-SVHLCVVDCGLKYNQLRCLIQ 176
+ L +E++ + N V+ VS K + + P + V+D G+K+ LR L++
Sbjct: 145 TETDLEEILENIRKISYESTNFVELVSPKNPIVHTPKNVKFRVVVLDLGVKFGILRELLK 204
Query: 177 RGAKLSVIPWNHPI 190
RG ++ IPWN I
Sbjct: 205 RGIEVVRIPWNWDI 218
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 200 FTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSK 249
N +D + EGI HESLP + Q+HPE + GP D +FD F+ + K
Sbjct: 322 MVNLDDNSVEGIKHESLPIIATQYHPEASPGPWDSLWVFDEFVKILEGRK 371
>sp|O28995|CARA_ARCFU Carbamoyl-phosphate synthase small chain OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=carA PE=3 SV=1
Length = 358
Score = 142 bits (357), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 113/198 (57%), Gaps = 15/198 (7%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF T M GY EA+TDPSY QIL++TYPLIGNYGV +D FES + + G +
Sbjct: 29 VFCTSMTGYVEALTDPSYKGQILMMTYPLIGNYGVNRED---------FESDGVKVEGFV 79
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
V ++C PS+W S ++ E L+ +++P + VDTR LT+ IR G + I G V
Sbjct: 80 VKELCKNPSNWRSEMSVDELLKQYDVPGIEGVDTRMLTRKIRIYGSMKAAIGIGDVDREK 139
Query: 124 V---TVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAK 180
+ VE D +LVD+V KE + G + + +VDCG+K + +R L++RG
Sbjct: 140 LVRKAVEQPFISDI---DLVDKVCVKEAKRFESDGDLEVVLVDCGVKMSIVRQLLKRGVN 196
Query: 181 LSVIPWNHPIKVPQGWQP 198
L+V+P++ P + + P
Sbjct: 197 LTVVPYDFPAEKIKEMNP 214
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSK 249
+P+ ++ N ND T EG+VH+ P +VQ+HPE GP D FD +++ +R+ +
Sbjct: 301 LPKEFEVTQINLNDHTVEGMVHKDFPLITVQYHPEAGPGPHDTYFFFDRYVDMLREYR 358
>sp|Q59968|CARA_SULSO Carbamoyl-phosphate synthase small chain OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=carA
PE=3 SV=1
Length = 367
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 109/184 (59%), Gaps = 10/184 (5%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF T M GY E++TDPSY QIL++T+PL+GNYGV P+ K E GIL FES RI + GLI
Sbjct: 34 VFTTSMNGYVESLTDPSYKGQILIITHPLVGNYGV-PEKKYEQGILTNFESERIQVEGLI 92
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
V + PS WNSA TL EWL++ N+P + +VDTR + K IR G + G I
Sbjct: 93 VAEHT-YPSKWNSALTLDEWLKSENVPGVFDVDTRMIVKKIRTYGTMMGIIAS------E 145
Query: 124 VTVEDLVFVDPNRGNLVD--QVSTKEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKL 181
+ ++D + + +D Q ++ + ++P + VVDCG+K+ L L +RG +
Sbjct: 146 LEIDDPRKYLEKKYDEIDFTQFTSPKSPIFHPNTGDMIVVVDCGIKHGILYGLYKRGFSI 205
Query: 182 SVIP 185
+P
Sbjct: 206 VRVP 209
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%)
Query: 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAV 245
+P + F N +D T EG++HE LP + QFHPE GP D +FD F V
Sbjct: 311 IPPNTKIWFYNPDDYTIEGLIHEKLPIITTQFHPEARPGPWDTTWVFDKFRTMV 364
>sp|O27079|CARA_METTH Carbamoyl-phosphate synthase small chain OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=carA PE=3 SV=2
Length = 356
Score = 131 bits (329), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 105/189 (55%), Gaps = 19/189 (10%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF TGM GY E++TDPSY QIL+ TYPL GNYGV + +++S I GLI
Sbjct: 31 VFATGMTGYVESLTDPSYRGQILMPTYPLQGNYGVTEE---------WYQSDGIKAEGLI 81
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSG-----KIVHGS 118
V +MC PSH S TL E+L + IP +A VDTR LT IR+ G + G +I
Sbjct: 82 VREMCPAPSHSLSEKTLPEFLEEYGIPGIAGVDTRALTIKIRDKGTMKGALATEEIDDDE 141
Query: 119 VAPLAVTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRG 178
+ +AV D+ +D LVD V +E V N S + +VDCG+K N + L+++
Sbjct: 142 LLEMAVKQPDITEID-----LVDMVCVREPVILNEDASGRVVIVDCGIKRNSIDALLEKD 196
Query: 179 AKLSVIPWN 187
+ ++P+
Sbjct: 197 LGVVIVPYT 205
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 25/38 (65%)
Query: 202 NANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFD 239
N NDGT EGI H LP FSVQ+HPE GP D +FD
Sbjct: 314 NLNDGTPEGIEHRELPVFSVQYHPEAGPGPHDTVNIFD 351
>sp|P25993|CARA_BACSU Carbamoyl-phosphate synthase pyrimidine-specific small chain
OS=Bacillus subtilis (strain 168) GN=pyrAA PE=3 SV=1
Length = 364
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 105/184 (57%), Gaps = 12/184 (6%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF TGM GY E ++DPSY QI+ LTYPLIGNYG+ D FES ++ GLI
Sbjct: 29 VFNTGMTGYQEILSDPSYCGQIVTLTYPLIGNYGINRDD---------FESITPFVKGLI 79
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
+ ++C+ PS+W SA TL E+L+ NIP L +DTR+LT+ IR G + G S +
Sbjct: 80 IKELCELPSNWRSAYTLDEYLKMKNIPGLQGIDTRKLTRMIRTAGALKGTFA-SSDEDIE 138
Query: 124 VTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKLSV 183
++ L + R N V QVS K +P + +VD G+K+ LR L +R + V
Sbjct: 139 AVLKRLNETELPR-NQVSQVSAKTAYP-SPGRGKRIVLVDFGMKHGILRELNKRKCDVIV 196
Query: 184 IPWN 187
+P+N
Sbjct: 197 VPYN 200
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 204 NDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSK 249
ND T EG+ H++LP F+VQ+HPE + GP D LFD FI + ++
Sbjct: 309 NDDTIEGLKHKTLPAFTVQYHPEASPGPEDANHLFDRFIEMIETTE 354
>sp|Q9K9V8|CARA_BACHD Carbamoyl-phosphate synthase pyrimidine-specific small chain
OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197
/ FERM 7344 / JCM 9153 / C-125) GN=pyrAA PE=3 SV=1
Length = 362
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/187 (41%), Positives = 109/187 (58%), Gaps = 18/187 (9%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF TGM GY E ++DPSY QI+ LTYPLIGNYG+ D FES I GLI
Sbjct: 29 VFNTGMTGYQEMLSDPSYCGQIVTLTYPLIGNYGINRDD---------FESMNPAIHGLI 79
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
V + CD PS+W S +L L+A IP L+ +DTR+LT+ IR G + G++ PL
Sbjct: 80 VKEACDIPSNWRSEESLDSLLKAKQIPGLSGIDTRKLTRLIRMHGTLKGQL-----CPLD 134
Query: 124 VTVEDLV---FVDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAK 180
V VE +V P + V +VST++ + P + +VD G+K+N L+ LI+R +
Sbjct: 135 VDVEQIVQELKATPTPTDQVSRVSTRDPY-HVPGPGKRVVLVDYGMKHNILQELIRRNCE 193
Query: 181 LSVIPWN 187
+ V+P++
Sbjct: 194 VFVVPYH 200
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 53/111 (47%), Gaps = 17/111 (15%)
Query: 158 HLCVVDCGLKYNQLRCLIQRGAK----------LSVIPWNHPIKVPQG----WQPLFTN- 202
L + CG K +LR RG+ + + NH V +G + T+
Sbjct: 250 QLFALACGAKTEKLR-FGHRGSNHPVRERSTGLIEITAQNHGYTVTEGSLVNTDLIVTHE 308
Query: 203 -ANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSKTRT 252
NDGT EG+ H+ P FSVQ+HPE + GP D +LFD FI + +K R
Sbjct: 309 AVNDGTIEGLAHKVHPAFSVQYHPEASPGPEDSNVLFDRFIKLMESNKHRA 359
>sp|Q970U8|CARA_SULTO Carbamoyl-phosphate synthase small chain OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=carA
PE=3 SV=1
Length = 372
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/186 (41%), Positives = 111/186 (59%), Gaps = 13/186 (6%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF T M GYPE++TDPSY QILV+T+PL+GNYGVP + + E GIL FES +I + GL+
Sbjct: 37 VFTTSMNGYPESLTDPSYRGQILVITHPLVGNYGVPEKQRVE-GILTNFESEQIQVEGLV 95
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
V + D P WNS+ +L EWL + +P L++VDTR + K +R GV+ G I G
Sbjct: 96 VSEETD-PFKWNSSKSLHEWLLSEGVPGLSDVDTRSIVKKVRSRGVMMGVIASG------ 148
Query: 124 VTVEDLVFVDPNRGNLVD--QVSTKE--VVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGA 179
+ED + + +D Q ++ + +V TG + VVDCG+K+ L L QRG
Sbjct: 149 YEIEDPKKFLEKKYDEIDFTQFTSPKAPIVHLGNTGET-IVVVDCGVKHGILYQLHQRGF 207
Query: 180 KLSVIP 185
+ +P
Sbjct: 208 TIVRVP 213
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%)
Query: 200 FTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAV 245
F N +DGT EG +HE LP + QFHPE GP D+ +FD F V
Sbjct: 323 FINPDDGTIEGWIHEKLPIITTQFHPEARPGPWDVTWVFDKFKKMV 368
>sp|Q6NH15|CARA_CORDI Carbamoyl-phosphate synthase small chain OS=Corynebacterium
diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype
gravis) GN=carA PE=3 SV=1
Length = 379
Score = 127 bits (320), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 120/238 (50%), Gaps = 26/238 (10%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF T M GY E MTDPSYH+QI+V T P IGN G +D + HG +IW++GL+
Sbjct: 35 VFTTAMSGYQETMTDPSYHRQIVVATAPQIGNTGWNDEDGESHG-------DKIWVAGLV 87
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVA--P 121
+ D+ S+W + +L + +R NI ++ VDTR + +H+R G V+ I G A P
Sbjct: 88 IRDLSTAVSNWRAKRSLEDEMREQNIVGISGVDTRAIVRHLRNFGSVAAGIFSGEAAKQP 147
Query: 122 LAVTVEDLVFVDPNR--GNLVDQVSTKEVVTYNPTGSVHLCVV--DCGLKYNQLRCLIQR 177
+E +V P+ +L +VST+E P G VV D G+K N R +R
Sbjct: 148 HDELIE-IVKSQPSMAGADLASEVSTQEAYVVEPDGEALYTVVAYDMGIKTNTPRNFSRR 206
Query: 178 GAKLSVIPWNHPIKVPQGWQPLFTNANDGTNE--------GIVHESL----PFFSVQF 223
G + V+P N P + + P ++G + GIV E L PFF + F
Sbjct: 207 GIRTVVVPANTPAEDIAQYNPDGVFVSNGPGDPATADVMVGIVQEILAQKIPFFGICF 264
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 204 NDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSK 249
ND T EG+ + +SVQ+HPE AGP D LFD F+ ++ +K
Sbjct: 333 NDDTVEGVALVNGLAYSVQYHPEAAAGPHDANPLFDQFVELIQANK 378
>sp|Q87WP3|CARA_PSESM Carbamoyl-phosphate synthase small chain OS=Pseudomonas syringae
pv. tomato (strain DC3000) GN=carA PE=3 SV=1
Length = 378
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 116/214 (54%), Gaps = 30/214 (14%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF T M GY E +TDPSY QQI+ LTYP IGN G P+D ES R+W +GL+
Sbjct: 31 VFNTAMTGYQEILTDPSYAQQIVTLTYPHIGNTGTTPEDA---------ESDRVWSAGLV 81
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHG-SVAPL 122
+ D+ S+W + +LG++L+A+N+ A+A +DTRRLT+ +RE G +G I+ G +++
Sbjct: 82 IRDLPLVASNWRNKMSLGDYLKANNVVAIAGIDTRRLTRILREKGAQNGCIMAGDNISEE 141
Query: 123 AVTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSV------------------HLCVVDC 164
A F +L +VSTK+ TY SV H+ D
Sbjct: 142 AAIAAARGFPGLKGMDLAKEVSTKD--TYEWRHSVWNLQTDSHPEIAASELPYHVVAYDY 199
Query: 165 GLKYNQLRCLIQRGAKLSVIPWNHPIKVPQGWQP 198
G+K N LR L++RG +++V+P P ++P
Sbjct: 200 GVKVNILRMLVERGCRVTVVPAQTPASEVLAYKP 233
Score = 39.7 bits (91), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%)
Query: 205 DGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAV 245
DGT +GI FS Q HPE + GP D+ LFD FI+A+
Sbjct: 334 DGTLQGIELTDKSAFSFQGHPEASPGPNDVAPLFDRFIDAM 374
>sp|A4G0Y3|CARA_METM5 Carbamoyl-phosphate synthase small chain OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=carA PE=3
SV=1
Length = 366
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 114/210 (54%), Gaps = 25/210 (11%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF T M GY E +TDPSY QI+ +TYPL GNYGV + +FES I G +
Sbjct: 29 VFNTSMTGYVEILTDPSYKGQIVTMTYPLEGNYGVEKE---------WFESDGIKAEGFV 79
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
V DM + S L E+L+ +NIP ++ VDTR +T+ IR GV+ ++ S P+
Sbjct: 80 VKDM--------TGSKLDEFLKEYNIPGISGVDTRYITRKIRSKGVIR-SLLKTSTNPIT 130
Query: 124 VTVE-DLV-----FVDPNRGNLVDQVSTKEVVTYNPTGSVHLCV-VDCGLKYNQLRCLIQ 176
E +L+ + D + +LV +VSTKE V YN CV +DCG+K + + CL++
Sbjct: 131 KDEETELIKKVVEYPDISEIDLVPEVSTKETVIYNAEDEKTRCVLIDCGVKQSIIDCLVE 190
Query: 177 RGAKLSVIPWNHPIKVPQGWQPLFTNANDG 206
RG + +P+N + + P F ++G
Sbjct: 191 RGCSVVKVPYNSKEEEIMSYNPDFVLVSNG 220
Score = 39.3 bits (90), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 179 AKLSVIPWNHPIK-----VPQGWQPLFTNANDGTNEGIVH-ESLPF----FSVQFHPEHT 228
K+ + NH VP+G + + N ND T EGI ES +SVQ+HPE
Sbjct: 281 GKVYITSQNHGFATDDKIVPEGSELMHMNLNDDTVEGIRKIESNDLKNTVWSVQYHPEAG 340
Query: 229 AGPADLELLFD 239
GP D LFD
Sbjct: 341 PGPHDARFLFD 351
>sp|P52557|CARA_BACCL Carbamoyl-phosphate synthase pyrimidine-specific small chain
OS=Bacillus caldolyticus GN=pyrAA PE=3 SV=1
Length = 364
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 105/195 (53%), Gaps = 12/195 (6%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF TGM GY E ++DPSY QI+ +TYPLIGNYG+ D FE+ R + G I
Sbjct: 29 VFNTGMTGYQEILSDPSYCGQIVTMTYPLIGNYGINRDD---------FEAIRPHVHGFI 79
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
V + C PS+W TL E+L+ IP L+ +DTR+LT+ IR+ G + G I V P+
Sbjct: 80 VKEACVKPSNWRGELTLDEYLKEKGIPGLSGIDTRKLTRLIRQYGTLKGMICGLDVDPVE 139
Query: 124 VTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKLSV 183
+ P + V +VSTK +P + ++D G+K+ LR L +R + V
Sbjct: 140 AAAKLRAMEWPR--DQVRRVSTKSAYP-SPGRGERIVLIDFGMKHGILRELNKRNCDVIV 196
Query: 184 IPWNHPIKVPQGWQP 198
+P+N + GW P
Sbjct: 197 LPYNATAEEVLGWHP 211
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 204 NDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSKTRTPV 254
NDGT EG+ H +P F+VQ+HPE + GP D LFD F+ +R+ + V
Sbjct: 311 NDGTVEGLRHLDVPAFTVQYHPEASPGPEDANPLFDEFLALIREFNKKGEV 361
>sp|Q6HES7|CARA_BACHK Carbamoyl-phosphate synthase small chain OS=Bacillus thuringiensis
subsp. konkukian (strain 97-27) GN=carA PE=3 SV=1
Length = 365
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 109/187 (58%), Gaps = 19/187 (10%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF TGM GY E ++DPSY QI+ TYPLIGNYG+ D FES ++GLI
Sbjct: 29 VFTTGMTGYQETLSDPSYCGQIVTFTYPLIGNYGINRDD---------FESIHPSVNGLI 79
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVH--GSVAP 121
V ++CD PS++ + +L ++L+ NIP LA +DTR+LT+ IR+ G + G++ + V
Sbjct: 80 VNEICDHPSNFRNEISLNDYLKERNIPGLAGIDTRKLTRKIRQYGTLRGRLCNMDADVEY 139
Query: 122 LAVTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCV-VDCGLKYNQLRCLIQRGAK 180
+ ++ VF D V +VSTK+ Y G H V VD G+K+ LR L +R
Sbjct: 140 IVSQLKATVFTDH-----VKRVSTKD--PYPSPGRGHRVVLVDFGMKHGILRELNKRDCD 192
Query: 181 LSVIPWN 187
+ V+P+N
Sbjct: 193 VIVVPYN 199
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 204 NDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSK 249
NDGT EG+ H+ P F+VQ+HPE +AGP D LF+ F+ + + K
Sbjct: 310 NDGTVEGLRHKKFPAFTVQYHPEASAGPEDANDLFEDFLTMIENFK 355
>sp|Q81WF1|CARA_BACAN Carbamoyl-phosphate synthase small chain OS=Bacillus anthracis
GN=carA PE=3 SV=1
Length = 365
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 109/187 (58%), Gaps = 19/187 (10%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF TGM GY E ++DPSY QI+ TYPLIGNYG+ D FES ++GLI
Sbjct: 29 VFTTGMTGYQETLSDPSYCGQIVTFTYPLIGNYGINRDD---------FESIHPSVNGLI 79
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVH--GSVAP 121
V ++CD PS++ + +L ++L+ NIP LA +DTR+LT+ IR+ G + G++ + V
Sbjct: 80 VNEICDHPSNFRNEISLNDYLKERNIPGLAGIDTRKLTRKIRQYGTLRGRLCNMDADVEY 139
Query: 122 LAVTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCV-VDCGLKYNQLRCLIQRGAK 180
+ ++ VF D V +VSTK+ Y G H V VD G+K+ LR L +R
Sbjct: 140 IVSQLKATVFTDH-----VKRVSTKD--PYPSPGRGHRVVLVDFGMKHGILRELNKRDCD 192
Query: 181 LSVIPWN 187
+ V+P+N
Sbjct: 193 VIVVPYN 199
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 204 NDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSK 249
NDGT EG+ H+ P F+VQ+HPE +AGP D LF+ F+ + + K
Sbjct: 310 NDGTVEGLRHKKFPAFTVQYHPEASAGPEDANDLFEDFLTMIENFK 355
>sp|Q8RBK1|CARA_THETN Carbamoyl-phosphate synthase small chain OS=Thermoanaerobacter
tengcongensis (strain DSM 15242 / JCM 11007 / NBRC
100824 / MB4) GN=carA PE=3 SV=1
Length = 356
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 102/184 (55%), Gaps = 20/184 (10%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF TGM GY EA+TDPSY QI+V+TYPLIGNYG+ D F+S + I G +
Sbjct: 29 VFTTGMTGYQEAITDPSYAGQIVVMTYPLIGNYGINKYD---------FQSEKPHIRGFV 79
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
V + CD PS++ S +L +L HNIP L+ +DTR LTK +RE G + G I +
Sbjct: 80 VREYCDKPSNFQSEESLLSYLDNHNIPVLSGIDTRALTKKLRENGTMRGIITYNP----- 134
Query: 124 VTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKLSV 183
ED + D + NL+++VSTK+ G L +D G K L+ L G + V
Sbjct: 135 ---EDNIEFD--QTNLLEEVSTKKPYRIAGIGP-KLAFIDLGTKKGILKMLNSVGFDIYV 188
Query: 184 IPWN 187
P+N
Sbjct: 189 FPYN 192
>sp|Q732I2|CARA_BACC1 Carbamoyl-phosphate synthase small chain OS=Bacillus cereus (strain
ATCC 10987) GN=carA PE=3 SV=1
Length = 365
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 109/187 (58%), Gaps = 19/187 (10%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF TGM GY E ++DPSY QI+ TYPLIGNYG+ D FES ++GLI
Sbjct: 29 VFTTGMTGYQETLSDPSYCGQIVTFTYPLIGNYGINRDD---------FESIHPSVNGLI 79
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVH--GSVAP 121
V ++CD PS++ + +L ++L+ NIP LA +DTR+LT+ IR+ G + G++ + V
Sbjct: 80 VNEICDHPSNFRNEISLNDYLKERNIPGLAGIDTRKLTRKIRQYGTLRGRLCNMDADVEY 139
Query: 122 LAVTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCV-VDCGLKYNQLRCLIQRGAK 180
+ ++ VF D V +VSTK+ Y G H V VD G+K+ LR L +R
Sbjct: 140 IVSQLKATVFTDH-----VKRVSTKD--PYPSPGRGHRVVLVDFGMKHGILRELNKRDCD 192
Query: 181 LSVIPWN 187
+ V+P+N
Sbjct: 193 VIVVPYN 199
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 204 NDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSK 249
NDGT EG+ H+ P F+VQ+HPE +AGP D LF+ F+ + + K
Sbjct: 310 NDGTVEGLRHKKFPAFTVQYHPEASAGPEDANDLFEDFLTMIENFK 355
>sp|A6VHH7|CARA_METM7 Carbamoyl-phosphate synthase small chain OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=carA PE=3
SV=1
Length = 366
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 114/210 (54%), Gaps = 25/210 (11%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF T M GY E +TDPSY QI+ +TYPL GNYGV + +FES I G +
Sbjct: 29 VFNTSMTGYVEILTDPSYKGQIITMTYPLEGNYGVEKE---------WFESDGIKAEGFV 79
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
V DM + L E+L+ +NIP ++ VDTR +T+ IR GV+ ++ S P+
Sbjct: 80 VKDM--------TGLELDEFLKEYNIPGISGVDTRYITRKIRSKGVIR-SLLKTSTNPIT 130
Query: 124 VTVE-DLV-----FVDPNRGNLVDQVSTKEVVTYNPTGSVHLCV-VDCGLKYNQLRCLIQ 176
E +L+ + D + +LV +VSTKE VTYN CV +DCG+K + + CL++
Sbjct: 131 KDEETELIKKVVEYPDISEIDLVPEVSTKETVTYNAENEKTSCVLIDCGVKQSIVNCLVE 190
Query: 177 RGAKLSVIPWNHPIKVPQGWQPLFTNANDG 206
RG + +P+N + + P F ++G
Sbjct: 191 RGCSVIKVPYNSKKEEILSYNPDFVLVSNG 220
Score = 38.1 bits (87), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 179 AKLSVIPWNHPIK-----VPQGWQPLFTNANDGTNEGIVH-ESLPF----FSVQFHPEHT 228
K+ + NH VP G + + N ND T EGI ES +SVQ+HPE
Sbjct: 281 GKVYITSQNHGFATDDKIVPAGSELMHMNLNDDTVEGIRKIESEDIKNTVWSVQYHPEAG 340
Query: 229 AGPADLELLFD 239
GP D LFD
Sbjct: 341 PGPHDARFLFD 351
>sp|Q67Q55|CARA_SYMTH Carbamoyl-phosphate synthase small chain OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=carA PE=3 SV=1
Length = 363
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 98/185 (52%), Gaps = 12/185 (6%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF TGM GY E +TDPSY+ QI+V+TYPLIGNYGV D ES + WI GL+
Sbjct: 23 VFNTGMTGYQEVVTDPSYYGQIVVMTYPLIGNYGVTAADG---------ESRQPWIRGLV 73
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
V ++CD PSHW + +L ++L +P LA +DTR LT+H+R G + G I
Sbjct: 74 VKELCDRPSHWQAVGSLSDYLAGCGVPILAGLDTRALTRHLRSHGTMRGVIATLPEGAEP 133
Query: 124 VTVEDLVFVDPNRGNLVDQV--STKEVVTYN-PTGSVHLCVVDCGLKYNQLRCLIQRGAK 180
+ +V+ R ++ S Y P + VD G K N LR L RG
Sbjct: 134 GPAQVAAWVETARAFRLEGAVRSVATAAPYRIPGPGPRVVAVDFGAKENILRELTARGCD 193
Query: 181 LSVIP 185
++V+P
Sbjct: 194 VTVVP 198
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%)
Query: 204 NDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSKTRT 252
+DGT EG+ H LP F+VQ+HPE GP + LFD F+ V S T
Sbjct: 312 HDGTVEGLAHRRLPLFTVQYHPEACPGPRENRYLFDRFLALVDRSAVST 360
>sp|Q819S2|CARA_BACCR Carbamoyl-phosphate synthase small chain OS=Bacillus cereus (strain
ATCC 14579 / DSM 31) GN=carA PE=3 SV=2
Length = 365
Score = 124 bits (312), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 109/187 (58%), Gaps = 19/187 (10%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF TGM GY E ++DPSY QI+ TYPLIGNYG+ D FES ++GLI
Sbjct: 29 VFTTGMTGYQETLSDPSYCGQIVTFTYPLIGNYGINRDD---------FESIHPSVNGLI 79
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVH--GSVAP 121
V ++C+ PS++ + +L ++L+ NIP LA +DTR+LT+ IR+ G + G++ + V
Sbjct: 80 VNEICNHPSNFRNEISLNDYLKERNIPGLAGIDTRKLTRKIRQYGTLRGRLCNMDADVEY 139
Query: 122 LAVTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCV-VDCGLKYNQLRCLIQRGAK 180
+ ++ VF D V +VSTK+ Y G H V VD G+K+ LR L +R
Sbjct: 140 IVSQLKATVFTDH-----VKRVSTKD--PYPSPGRGHRVVLVDFGMKHGILRELNKRDCD 192
Query: 181 LSVIPWN 187
+ V+P+N
Sbjct: 193 VIVVPYN 199
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 204 NDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSK 249
NDGT EG+ H+ P F+VQ+HPE +AGP D LF+ F+ + + K
Sbjct: 310 NDGTVEGLRHKKFPAFTVQYHPEASAGPEDANDLFEDFLTMIENFK 355
>sp|Q636D9|CARA_BACCZ Carbamoyl-phosphate synthase small chain OS=Bacillus cereus (strain
ZK / E33L) GN=carA PE=3 SV=1
Length = 365
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 108/187 (57%), Gaps = 19/187 (10%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF TGM GY E ++DPSY QI+ TYPLIGNYG+ D FES ++GLI
Sbjct: 29 VFTTGMTGYQETLSDPSYCGQIVTFTYPLIGNYGINRDD---------FESIHPSVNGLI 79
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVH--GSVAP 121
V ++CD PS++ + +L ++L+ IP LA +DTR+LT+ IR+ G + G++ + V
Sbjct: 80 VNEICDHPSNFRNEISLNDYLKERKIPGLAGIDTRKLTRKIRQYGTLRGRLCNMDADVEY 139
Query: 122 LAVTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCV-VDCGLKYNQLRCLIQRGAK 180
+ ++ VF D V +VSTK+ Y G H V VD G+K+ LR L +R
Sbjct: 140 IVSQLKATVFTDH-----VKRVSTKD--PYPSPGRGHRVVLVDFGMKHGILRELNKRDCD 192
Query: 181 LSVIPWN 187
+ V+P+N
Sbjct: 193 VIVVPYN 199
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 204 NDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSK 249
NDGT EG+ H+ P F+VQ+HPE +AGP D LF+ F+ + + K
Sbjct: 310 NDGTVEGLRHKKFPAFTVQYHPEASAGPEDANDLFEDFLTMIENFK 355
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,017,861
Number of Sequences: 539616
Number of extensions: 5811185
Number of successful extensions: 13826
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 12680
Number of HSP's gapped (non-prelim): 775
length of query: 337
length of database: 191,569,459
effective HSP length: 118
effective length of query: 219
effective length of database: 127,894,771
effective search space: 28008954849
effective search space used: 28008954849
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)