Query psy1128
Match_columns 337
No_of_seqs 292 out of 2955
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 22:48:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1128.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1128hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0505 CarA Carbamoylphosphat 100.0 9.5E-91 2.1E-95 669.3 24.5 240 2-250 28-367 (368)
2 KOG0370|consensus 100.0 2.9E-83 6.2E-88 664.5 27.3 239 2-249 27-356 (1435)
3 TIGR01368 CPSaseIIsmall carbam 100.0 1.9E-82 4.2E-87 622.7 25.2 235 2-246 25-357 (358)
4 CHL00197 carA carbamoyl-phosph 100.0 1.3E-81 2.8E-86 620.6 26.3 239 2-250 31-379 (382)
5 PRK12564 carbamoyl phosphate s 100.0 1E-81 2.3E-86 618.2 25.2 234 2-245 29-360 (360)
6 PLN02771 carbamoyl-phosphate s 100.0 9.4E-82 2E-86 624.6 21.7 227 2-238 81-415 (415)
7 PRK12838 carbamoyl phosphate s 100.0 3.2E-80 7E-85 606.2 24.7 231 2-247 27-352 (354)
8 PF00988 CPSase_sm_chain: Carb 100.0 2.6E-57 5.7E-62 386.2 7.6 105 2-115 27-131 (131)
9 PF02787 CPSase_L_D3: Carbamoy 99.9 4.4E-23 9.6E-28 175.2 2.6 64 255-319 60-123 (123)
10 PRK05294 carB carbamoyl phosph 99.8 2.2E-20 4.8E-25 206.0 7.7 78 259-337 484-561 (1066)
11 PRK12815 carB carbamoyl phosph 99.8 2.4E-20 5.3E-25 205.6 7.7 77 260-337 485-562 (1068)
12 PLN02735 carbamoyl-phosphate s 99.8 6.1E-20 1.3E-24 202.8 9.1 76 261-337 506-581 (1102)
13 TIGR01369 CPSaseII_lrg carbamo 99.8 1.4E-19 3.1E-24 199.4 8.7 77 260-337 484-561 (1050)
14 cd01744 GATase1_CPSase Small c 99.6 2.8E-15 6E-20 133.9 9.3 84 159-242 1-178 (178)
15 COG0512 PabA Anthranilate/para 99.5 1.1E-13 2.4E-18 125.2 10.6 53 191-244 138-190 (191)
16 PRK05670 anthranilate synthase 99.5 3.5E-13 7.5E-18 121.3 11.6 52 192-245 137-188 (189)
17 PLN02335 anthranilate synthase 99.5 3.2E-13 6.8E-18 125.3 11.4 58 192-251 160-219 (222)
18 PRK09522 bifunctional glutamin 99.5 5.8E-13 1.2E-17 137.8 13.4 110 191-306 139-279 (531)
19 PRK08007 para-aminobenzoate sy 99.4 1.3E-12 2.8E-17 118.0 11.4 51 191-243 136-186 (187)
20 TIGR00566 trpG_papA glutamine 99.4 2.2E-12 4.7E-17 116.5 11.0 52 191-243 136-187 (188)
21 CHL00101 trpG anthranilate syn 99.4 2.9E-12 6.4E-17 115.7 10.7 51 192-244 137-188 (190)
22 PLN02347 GMP synthetase 99.4 2.4E-12 5.3E-17 133.2 11.0 90 158-249 12-206 (536)
23 PRK07649 para-aminobenzoate/an 99.3 7.2E-12 1.6E-16 114.0 11.8 55 191-247 136-190 (195)
24 TIGR00888 guaA_Nterm GMP synth 99.3 5E-12 1.1E-16 113.5 10.2 52 191-244 132-183 (188)
25 PRK06774 para-aminobenzoate sy 99.3 1E-11 2.2E-16 112.0 11.5 52 191-243 136-190 (191)
26 PRK14607 bifunctional glutamin 99.3 1.4E-11 3.1E-16 127.6 13.5 107 191-306 137-274 (534)
27 PRK08857 para-aminobenzoate sy 99.3 1.1E-11 2.3E-16 112.2 11.0 53 191-244 136-192 (193)
28 PRK00758 GMP synthase subunit 99.3 1.3E-11 2.9E-16 110.4 10.9 55 191-247 129-183 (184)
29 PRK05637 anthranilate synthase 99.3 1.6E-11 3.5E-16 112.9 10.9 53 192-245 151-205 (208)
30 PRK00074 guaA GMP synthase; Re 99.3 1.3E-11 2.8E-16 127.3 10.2 91 157-249 4-193 (511)
31 cd01742 GATase1_GMP_Synthase T 99.3 2E-11 4.4E-16 108.3 9.5 50 191-242 132-181 (181)
32 cd01743 GATase1_Anthranilate_S 99.2 7.9E-11 1.7E-15 105.3 9.9 45 196-242 140-184 (184)
33 PRK13566 anthranilate synthase 99.2 1.1E-10 2.3E-15 124.7 11.8 93 153-246 523-719 (720)
34 TIGR01823 PabB-fungal aminodeo 99.1 2.1E-10 4.6E-15 123.0 11.6 54 196-249 155-208 (742)
35 PRK07765 para-aminobenzoate sy 99.1 3.9E-10 8.4E-15 104.1 11.6 56 191-248 140-195 (214)
36 TIGR01815 TrpE-clade3 anthrani 99.1 3.2E-10 7E-15 121.0 12.6 56 191-247 653-710 (717)
37 PRK06895 putative anthranilate 99.1 5.1E-10 1.1E-14 101.0 11.1 52 191-244 137-188 (190)
38 PF00117 GATase: Glutamine ami 99.0 7.9E-10 1.7E-14 98.7 8.3 51 192-243 140-190 (192)
39 PLN02889 oxo-acid-lyase/anthra 99.0 1.8E-09 3.8E-14 117.4 11.5 43 206-249 297-339 (918)
40 PRK11366 puuD gamma-glutamyl-g 99.0 6.4E-10 1.4E-14 105.2 7.0 81 169-250 165-249 (254)
41 cd01746 GATase1_CTP_Synthase T 99.0 1E-09 2.3E-14 102.8 7.7 74 167-242 152-235 (235)
42 cd01745 GATase1_2 Subgroup of 98.9 1.8E-09 3.8E-14 97.5 6.2 81 157-242 101-189 (189)
43 COG2071 Predicted glutamine am 98.9 1.6E-09 3.5E-14 101.3 6.0 79 168-248 159-241 (243)
44 KOG0026|consensus 98.9 3.5E-09 7.5E-14 94.2 7.4 55 191-247 160-216 (223)
45 TIGR00337 PyrG CTP synthase. C 98.8 5E-09 1.1E-13 108.0 6.3 51 193-243 473-524 (525)
46 PRK13141 hisH imidazole glycer 98.8 2.8E-08 6E-13 90.5 9.4 53 191-246 151-203 (205)
47 PRK05380 pyrG CTP synthetase; 98.8 1.2E-08 2.5E-13 105.3 6.7 84 167-250 440-531 (533)
48 PRK06186 hypothetical protein; 98.7 1.8E-08 3.8E-13 94.3 5.6 77 168-247 142-228 (229)
49 KOG1622|consensus 98.7 3.6E-08 7.7E-13 99.0 7.8 90 158-249 18-208 (552)
50 PLN02327 CTP synthase 98.6 7.2E-08 1.6E-12 99.9 6.7 59 191-249 490-550 (557)
51 COG0518 GuaA GMP synthase - Gl 98.6 1.9E-07 4.2E-12 85.6 7.7 51 191-245 143-193 (198)
52 PRK13143 hisH imidazole glycer 98.5 4.6E-07 9.9E-12 82.5 10.1 52 191-246 147-199 (200)
53 cd01748 GATase1_IGP_Synthase T 98.5 3.6E-07 7.9E-12 82.7 8.2 49 191-242 150-198 (198)
54 PRK13170 hisH imidazole glycer 98.4 9.8E-07 2.1E-11 80.3 8.9 50 192-244 147-196 (196)
55 PRK13152 hisH imidazole glycer 98.4 1.5E-06 3.3E-11 79.1 9.1 32 208-243 169-200 (201)
56 PLN02617 imidazole glycerol ph 98.3 3.9E-06 8.4E-11 87.5 12.2 39 205-247 174-212 (538)
57 TIGR01855 IMP_synth_hisH imida 98.3 1.6E-06 3.5E-11 78.7 8.1 43 198-243 153-195 (196)
58 PRK13181 hisH imidazole glycer 98.3 3.1E-06 6.6E-11 76.9 9.2 45 196-243 154-198 (199)
59 TIGR01737 FGAM_synth_I phospho 98.2 2.9E-06 6.3E-11 78.9 6.5 39 206-244 184-226 (227)
60 PF07722 Peptidase_C26: Peptid 98.2 6.4E-07 1.4E-11 82.8 1.6 58 167-226 156-217 (217)
61 cd01747 GATase1_Glutamyl_Hydro 98.1 7.9E-06 1.7E-10 78.3 6.7 39 192-230 176-217 (273)
62 PRK13525 glutamine amidotransf 98.0 1.1E-05 2.3E-10 73.2 6.0 59 180-246 128-188 (189)
63 cd01741 GATase1_1 Subgroup of 97.9 1.2E-05 2.6E-10 71.8 4.7 42 191-242 147-188 (188)
64 PRK14004 hisH imidazole glycer 97.8 2.9E-05 6.3E-10 71.7 5.5 49 194-244 161-209 (210)
65 COG0504 PyrG CTP synthase (UTP 97.8 3.2E-05 6.9E-10 79.0 5.7 95 155-251 427-532 (533)
66 PRK13527 glutamine amidotransf 97.8 4.6E-05 1E-09 69.3 6.1 58 181-246 139-198 (200)
67 TIGR03800 PLP_synth_Pdx2 pyrid 97.7 4.6E-05 9.9E-10 68.9 5.2 45 191-243 140-184 (184)
68 KOG1224|consensus 97.7 2.9E-05 6.2E-10 79.9 3.5 56 191-247 161-219 (767)
69 PRK13146 hisH imidazole glycer 97.7 6.8E-05 1.5E-09 68.9 5.6 47 195-244 161-207 (209)
70 PRK09065 glutamine amidotransf 97.6 6E-05 1.3E-09 70.6 4.9 68 158-228 122-189 (237)
71 CHL00188 hisH imidazole glycer 97.6 0.0001 2.2E-09 68.1 5.3 37 204-244 173-209 (210)
72 COG0118 HisH Glutamine amidotr 97.5 0.00039 8.5E-09 64.0 8.3 27 217-245 177-203 (204)
73 PRK06490 glutamine amidotransf 97.5 0.00032 6.9E-09 66.0 7.7 47 190-244 146-192 (239)
74 cd01749 GATase1_PB Glutamine A 97.3 0.0003 6.4E-09 63.2 4.3 44 191-242 140-183 (183)
75 PRK07567 glutamine amidotransf 97.2 0.00038 8.3E-09 65.5 4.8 66 158-228 126-193 (242)
76 PRK08250 glutamine amidotransf 96.7 0.0027 5.9E-08 59.5 5.5 67 158-229 117-184 (235)
77 PRK03619 phosphoribosylformylg 96.7 0.0012 2.7E-08 61.2 3.0 37 207-243 178-218 (219)
78 PRK07053 glutamine amidotransf 96.5 0.003 6.4E-08 59.3 4.2 66 158-229 116-182 (234)
79 PRK05665 amidotransferase; Pro 96.4 0.0057 1.2E-07 57.7 5.6 46 182-229 143-190 (240)
80 PRK13142 hisH imidazole glycer 95.5 0.022 4.9E-07 52.1 5.3 29 214-244 159-187 (192)
81 PLN02832 glutamine amidotransf 94.3 0.07 1.5E-06 50.8 5.1 38 206-249 181-218 (248)
82 KOG0623|consensus 93.5 0.13 2.7E-06 51.3 5.3 80 215-305 180-276 (541)
83 KOG1559|consensus 91.9 0.11 2.3E-06 49.6 2.4 34 196-229 236-272 (340)
84 PRK05368 homoserine O-succinyl 90.5 0.7 1.5E-05 45.3 6.6 50 192-247 204-253 (302)
85 KOG2387|consensus 87.1 0.42 9.1E-06 49.1 2.5 40 194-233 495-535 (585)
86 PF10281 Ish1: Putative stress 76.4 2 4.2E-05 29.0 1.9 31 76-106 5-36 (38)
87 KOG1273|consensus 74.2 9.1 0.0002 38.2 6.5 68 158-226 46-117 (405)
88 PF01174 SNO: SNO glutamine am 70.0 8.8 0.00019 35.3 5.0 46 194-246 142-187 (188)
89 PF04552 Sigma54_DBD: Sigma-54 66.4 3.4 7.4E-05 36.9 1.6 35 264-299 118-157 (160)
90 PRK01175 phosphoribosylformylg 62.6 7.5 0.00016 37.3 3.3 74 167-246 170-258 (261)
91 KOG3179|consensus 61.3 17 0.00037 34.2 5.2 36 191-228 160-195 (245)
92 COG0047 PurL Phosphoribosylfor 60.3 17 0.00038 34.4 5.1 70 169-245 154-230 (231)
93 COG2403 Predicted GTPase [Gene 47.5 44 0.00095 34.2 5.9 47 73-119 47-93 (449)
94 PF12728 HTH_17: Helix-turn-he 46.3 31 0.00067 23.9 3.5 30 267-297 1-30 (51)
95 cd01740 GATase1_FGAR_AT Type 1 46.1 17 0.00036 34.0 2.7 67 168-240 158-236 (238)
96 KOG1399|consensus 45.4 24 0.00051 36.6 3.8 33 157-189 7-40 (448)
97 TIGR02395 rpoN_sigma RNA polym 45.0 20 0.00044 36.8 3.3 36 263-299 387-427 (429)
98 PRK12469 RNA polymerase factor 43.3 13 0.00029 38.8 1.7 36 263-299 437-477 (481)
99 PRK05932 RNA polymerase factor 43.3 19 0.00042 37.3 2.8 34 265-299 413-451 (455)
100 PF06242 DUF1013: Protein of u 42.9 22 0.00047 31.2 2.6 25 266-291 82-106 (140)
101 COG0036 Rpe Pentose-5-phosphat 42.1 1.3E+02 0.0029 28.4 7.9 90 94-184 95-196 (220)
102 PRK13146 hisH imidazole glycer 40.8 37 0.0008 31.0 4.0 28 157-184 2-33 (209)
103 PF04645 DUF603: Protein of un 40.7 24 0.00052 32.1 2.6 26 266-292 18-43 (181)
104 CHL00188 hisH imidazole glycer 40.5 40 0.00088 31.0 4.2 29 158-186 3-33 (210)
105 PRK08883 ribulose-phosphate 3- 40.2 1.5E+02 0.0032 27.6 8.0 25 160-184 170-194 (220)
106 PHA01083 hypothetical protein 39.7 18 0.00038 32.1 1.6 28 263-291 12-39 (149)
107 PRK13526 glutamine amidotransf 38.8 52 0.0011 30.0 4.5 45 191-243 134-178 (179)
108 PF00834 Ribul_P_3_epim: Ribul 37.8 1.4E+02 0.0031 27.3 7.4 97 82-184 74-193 (201)
109 TIGR01764 excise DNA binding d 36.7 67 0.0014 21.2 3.9 31 267-299 1-31 (49)
110 PF07801 DUF1647: Protein of u 35.9 52 0.0011 29.0 3.9 33 158-190 91-123 (142)
111 PRK13125 trpA tryptophan synth 35.7 3.4E+02 0.0074 25.3 9.8 101 80-184 93-213 (244)
112 COG0311 PDX2 Predicted glutami 35.4 1E+02 0.0022 28.6 5.8 48 192-247 145-192 (194)
113 PF06218 NPR2: Nitrogen permea 33.9 9.9 0.00021 39.1 -1.0 37 73-114 332-368 (428)
114 PF13384 HTH_23: Homeodomain-l 33.2 41 0.00089 23.1 2.4 25 267-292 17-41 (50)
115 KOG4015|consensus 31.4 32 0.0007 29.9 1.9 26 76-105 13-38 (133)
116 PRK09722 allulose-6-phosphate 30.8 2.6E+02 0.0056 26.3 8.0 83 97-185 97-197 (229)
117 PRK08745 ribulose-phosphate 3- 29.7 3.1E+02 0.0067 25.6 8.3 27 158-184 172-198 (223)
118 PRK13142 hisH imidazole glycer 29.1 70 0.0015 29.3 3.8 28 159-186 2-31 (192)
119 PF00853 Runt: Runt domain; I 26.4 31 0.00068 29.8 0.9 33 70-115 28-60 (135)
120 PF10743 Phage_Cox: Regulatory 25.9 1.3E+02 0.0029 24.3 4.4 40 264-305 9-48 (87)
121 PRK14057 epimerase; Provisiona 25.6 3.6E+02 0.0079 25.9 8.1 27 158-184 194-220 (254)
122 PF13507 GATase_5: CobB/CobQ-l 24.9 1.2E+02 0.0026 29.1 4.7 73 168-244 171-258 (259)
123 PRK08734 lipid A biosynthesis 24.3 57 0.0012 31.5 2.5 84 15-118 104-193 (305)
124 PF00196 GerE: Bacterial regul 24.0 70 0.0015 22.8 2.3 25 266-291 17-41 (58)
125 PRK08005 epimerase; Validated 23.6 3.9E+02 0.0085 24.8 7.8 80 96-184 94-190 (210)
126 TIGR02207 lipid_A_htrB lipid A 22.8 55 0.0012 31.4 2.0 83 15-117 111-197 (303)
127 KOG3111|consensus 22.2 3.3E+02 0.0071 25.6 6.7 79 98-184 102-196 (224)
128 KOG0292|consensus 22.0 2.9E+02 0.0063 31.6 7.3 132 51-225 4-145 (1202)
129 PRK08091 ribulose-phosphate 3- 22.0 5.3E+02 0.011 24.3 8.3 27 158-184 180-206 (228)
130 cd04761 HTH_MerR-SF Helix-Turn 21.9 1.2E+02 0.0026 20.3 3.1 26 269-295 2-27 (49)
131 PF04545 Sigma70_r4: Sigma-70, 21.8 1.2E+02 0.0025 20.9 3.1 25 266-291 19-43 (50)
132 PRK11070 ssDNA exonuclease Rec 21.7 1.1E+02 0.0024 32.8 4.1 38 157-194 129-168 (575)
133 PF11198 DUF2857: Protein of u 21.0 93 0.002 28.1 3.0 66 215-298 50-117 (180)
134 PHA02591 hypothetical protein; 20.8 1E+02 0.0022 24.7 2.7 24 266-290 58-81 (83)
135 cd06170 LuxR_C_like C-terminal 20.7 1.3E+02 0.0028 20.3 3.1 25 266-291 14-38 (57)
136 PF02002 TFIIE_alpha: TFIIE al 20.4 91 0.002 25.1 2.6 36 266-302 26-64 (105)
137 KOG0277|consensus 20.3 2.7E+02 0.0058 27.4 5.9 69 158-227 84-159 (311)
No 1
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=100.00 E-value=9.5e-91 Score=669.26 Aligned_cols=240 Identities=43% Similarity=0.719 Sum_probs=220.2
Q ss_pred cEEEecCCCCccccccCccccCeEeeecccceeeecCCCCCcccccccccccccCceEEEEEecccCCCCCCcCCcCCHH
Q psy1128 2 RYVFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLIVGDMCDTPSHWNSASTLG 81 (337)
Q Consensus 2 EvVFnT~MtGYqE~lTDPSy~gQiv~~TyP~IGNyGi~~~d~~~~~~~~~~ES~~~~~~g~iv~e~~~~~s~~~~~~sl~ 81 (337)
|||||||||||||+||||||.|||||||||||||||+|.+ ++||++|||+|+||||+|..|||||+.+||+
T Consensus 28 EvVFnTsMTGYqE~LTDPSY~gQIv~fTyP~IGNyGvn~~---------d~Es~~i~~~G~vvre~~~~~Sn~ra~~sL~ 98 (368)
T COG0505 28 EVVFNTSMTGYQEILTDPSYKGQIVTFTYPLIGNYGVNDE---------DFESDRIHAAGLVVRELSERPSNWRATESLD 98 (368)
T ss_pred EEEEeCCCCcccccccCCccCceEEEEeccccccccCCch---------hccccCceEEEEEEcccccccCccccccCHH
Confidence 9999999999999999999999999999999999999999 4899999999999999999999999999999
Q ss_pred HHHHHCCCCeEeccchHHHHHHHHhcCceeEEEEeCCCCChhhhhhhc-ccCCCCcCCccceeeecceEEeCC-----CC
Q psy1128 82 EWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLAVTVEDL-VFVDPNRGNLVDQVSTKEVVTYNP-----TG 155 (337)
Q Consensus 82 ~~L~~~~ipgi~gvDTRaLt~~iR~~G~~~g~i~~~~~~~~~~~~~~~-~~~~~~~~~lv~~VS~~~~~~~~~-----~~ 155 (337)
+||+++|||||+|||||+|||+||++|+|+|+|+++...+.+.+...+ .++++...|||++||++++|.|.+ ..
T Consensus 99 ~~Lk~~gipgI~GIDTRaLtr~iR~~G~m~~~I~~~~~~~~~~~~~~~~~~~~~~~~dlv~~VSt~~~~~~~~~~~~~~~ 178 (368)
T COG0505 99 EYLKEEGIPGIAGIDTRALTRKIREKGAMKGVIATGPELDPAKLLERARAFPGILGTDLVKEVSTKEPYTWPGLNGGGEP 178 (368)
T ss_pred HHHHHcCCCceecccHHHHHHHHHhcCCcceEeecCcccChHHHHHHHhhcCCCCcccccceeecCCceeccccccCCCC
Confidence 999999999999999999999999999999999987521322222222 688999999999999999999863 23
Q ss_pred CeeEEEEecCCcchHHHHHHHCCCEEEEecCCCCC---------------------------------------------
Q psy1128 156 SVHLCVVDCGLKYNQLRCLIQRGAKLSVIPWNHPI--------------------------------------------- 190 (337)
Q Consensus 156 ~~~I~viDfGiK~~ilr~L~~~G~~v~vvP~~~~~--------------------------------------------- 190 (337)
+++|+++|||+|+||||+|.+|||+|+||||++++
T Consensus 179 ~~~Vv~iD~GvK~nIlr~L~~rg~~vtVVP~~t~~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPifGICL 258 (368)
T COG0505 179 GKHVVVIDFGVKRNILRELVKRGCRVTVVPADTSAEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIFGICL 258 (368)
T ss_pred CcEEEEEEcCccHHHHHHHHHCCCeEEEEcCCCCHHHHHhhCCCEEEEeCCCCChhHHHHHHHHHHHHhccCCCeEEEcH
Confidence 57999999999999999999999999999999988
Q ss_pred -------------------------------------------------CCCCceeeEEEeCCCCceEEEeecCCcEEEE
Q psy1128 191 -------------------------------------------------KVPQGWQPLFTNANDGTNEGIVHESLPFFSV 221 (337)
Q Consensus 191 -------------------------------------------------sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gV 221 (337)
++++..++||+|+||||+|||+|+++|+|||
T Consensus 259 GHQllalA~Ga~T~KmkFGHrG~NhPV~dl~tgrv~ITSQNHGyaVd~~s~~~~~~vth~nlnDgTvEGi~h~~~P~fSV 338 (368)
T COG0505 259 GHQLLALALGAKTYKMKFGHRGANHPVKDLDTGRVYITSQNHGYAVDEDSLVETLKVTHVNLNDGTVEGIRHKDLPAFSV 338 (368)
T ss_pred HHHHHHHhcCCceeecccCCCCCCcCcccccCCeEEEEecCCceecChhhcCCCceeEEEeCCCCCccceecCCCceEEE
Confidence 4544338999999999999999999999999
Q ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHhccC
Q psy1128 222 QFHPEHTAGPADLELLFDIFINAVRDSKT 250 (337)
Q Consensus 222 QfHPEa~pgp~d~~~lF~~Fi~~~~~~k~ 250 (337)
||||||+|||+|+.|||++|+++|++.+.
T Consensus 339 Q~HPEAsPGPhDt~ylFd~Fi~~~~~~~~ 367 (368)
T COG0505 339 QYHPEASPGPHDTRYLFDEFIELMEAAKK 367 (368)
T ss_pred ccCCCCCCCCcccHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999997663
No 2
>KOG0370|consensus
Probab=100.00 E-value=2.9e-83 Score=664.46 Aligned_cols=239 Identities=59% Similarity=1.068 Sum_probs=228.3
Q ss_pred cEEEecCCCCccccccCccccCeEeeecccceeeecCCCCCcccccccccccccCceEEEEEecccCCCCCCcCCcCCHH
Q psy1128 2 RYVFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLIVGDMCDTPSHWNSASTLG 81 (337)
Q Consensus 2 EvVFnT~MtGYqE~lTDPSy~gQiv~~TyP~IGNyGi~~~d~~~~~~~~~~ES~~~~~~g~iv~e~~~~~s~~~~~~sl~ 81 (337)
|+||||||+||+|+||||||+||||+||||||||||+|.+..|+ |+++++||.+||++|+||+++|..+|||++..||.
T Consensus 27 E~VFqTgmvGYpEslTDPSY~gQiLv~T~PlIGNyGVP~~~~DE-~l~~~fES~~I~vaglVV~~ys~~ysHW~a~~SL~ 105 (1435)
T KOG0370|consen 27 ELVFQTGMVGYPESLTDPSYKGQILVFTYPLIGNYGVPPDARDE-GLLKHFESGQIHVAGLVVGEYSIEYSHWLATKSLG 105 (1435)
T ss_pred EEEEecCCcCCccccCCccccceEEEEecccccCCCCCCCcccc-ccccccccCceEEEEEEhhhhccchhhhhhhhhHH
Confidence 89999999999999999999999999999999999999666788 99999999999999999999999999999999999
Q ss_pred HHHHHCCCCeEeccchHHHHHHHHhcCceeEEEEeCCCCChhhhhhhcccCCCCcCCccceeeecceEEeCCCCCeeEEE
Q psy1128 82 EWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLAVTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCV 161 (337)
Q Consensus 82 ~~L~~~~ipgi~gvDTRaLt~~iR~~G~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~VS~~~~~~~~~~~~~~I~v 161 (337)
+||+++|||||+|||||+|||+|||+|+|.|+|+.+..+. .+.+|+..||+++||+++|+.+..++.++|++
T Consensus 106 eWlq~~gVp~i~gvDTRaLtk~lReqGSmLgkl~~e~~~~--------~~vdpn~~nLvs~VS~Kep~~y~~Gk~~~I~a 177 (1435)
T KOG0370|consen 106 EWLQEEGVPGIYGVDTRALTKKLREQGSMLGKLSIEKSPV--------LFVDPNKRNLVSQVSTKEPKVYGDGKSLRILA 177 (1435)
T ss_pred HHHHhcCCCccccccHHHHHHHHHhcCcceeEEEecCCCC--------cccCCCcccchhhheeccceEEcCCcccEEEE
Confidence 9999999999999999999999999999999999877522 28899999999999999999998666789999
Q ss_pred EecCCcchHHHHHHHCCCEEEEecCCCCC---------------------------------------------------
Q psy1128 162 VDCGLKYNQLRCLIQRGAKLSVIPWNHPI--------------------------------------------------- 190 (337)
Q Consensus 162 iDfGiK~~ilr~L~~~G~~v~vvP~~~~~--------------------------------------------------- 190 (337)
+|||+|.|+||||.+|||+|+||||++++
T Consensus 178 iDcG~K~N~IRcL~~RGa~vtVvPw~~~i~~~~yDGlflSNGPGdPe~~~~~v~~vr~lL~~~~PvfGIClGHQllA~Aa 257 (1435)
T KOG0370|consen 178 IDCGLKYNQIRCLVKRGAEVTVVPWDYPIAKEEYDGLFLSNGPGDPELCPLLVQNVRELLESNVPVFGICLGHQLLALAA 257 (1435)
T ss_pred cccCchHHHHHHHHHhCceEEEecCCccccccccceEEEeCCCCCchhhHHHHHHHHHHHhCCCCeEEEehhhHHHHHhh
Confidence 99999999999999999999999999987
Q ss_pred ----------------------------------------CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCC
Q psy1128 191 ----------------------------------------KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAG 230 (337)
Q Consensus 191 ----------------------------------------sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pg 230 (337)
+||.+|.++|+|+||++.|||.|..+|+|+||||||+.+|
T Consensus 258 GakT~KmKyGNRGhNiP~~~~~tGrc~ITSQNHGYAVD~~tLp~gWk~lFvN~NDgSNEGI~Hss~P~fSvQFHPEat~G 337 (1435)
T KOG0370|consen 258 GAKTYKMKYGNRGHNIPCTCRATGRCFITSQNHGYAVDPATLPAGWKPLFVNANDGSNEGIMHSSKPFFSVQFHPEATPG 337 (1435)
T ss_pred CCceEEeeccccCCCccceeccCceEEEEecCCceeeccccccCCCchheeecccCCCceEecCCCCceeeecCCcCCCC
Confidence 8899999999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHhcc
Q psy1128 231 PADLELLFDIFINAVRDSK 249 (337)
Q Consensus 231 p~d~~~lF~~Fi~~~~~~k 249 (337)
|+|+.++|+.|++.+.+.+
T Consensus 338 P~DTeyLFDiFi~lvkk~k 356 (1435)
T KOG0370|consen 338 PHDTEYLFDVFIELVKKSK 356 (1435)
T ss_pred CcchHHHHHHHHHHHHHHh
Confidence 9999999999999996543
No 3
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=100.00 E-value=1.9e-82 Score=622.74 Aligned_cols=235 Identities=45% Similarity=0.738 Sum_probs=214.8
Q ss_pred cEEEecCCCCccccccCccccCeEeeecccceeeecCCCCCcccccccccccccCceEEEEEecccCCCCCCcCCcCCHH
Q psy1128 2 RYVFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLIVGDMCDTPSHWNSASTLG 81 (337)
Q Consensus 2 EvVFnT~MtGYqE~lTDPSy~gQiv~~TyP~IGNyGi~~~d~~~~~~~~~~ES~~~~~~g~iv~e~~~~~s~~~~~~sl~ 81 (337)
|||||||||||||+||||||+|||||||||||||||||++ ++||++||++|+||||+|+.|||||+.+||+
T Consensus 25 EvvF~T~mtGYqE~ltDPSy~gQi~~~T~P~iGNyG~~~~---------~~es~~~~~~g~iv~~~~~~~s~~~~~~~l~ 95 (358)
T TIGR01368 25 EVVFNTGMTGYQEILTDPSYKGQIVVFTYPLIGNYGVNDE---------DAESKGIHVSGLVVRELSDRYSNWRATESLD 95 (358)
T ss_pred EEEEeCCCCCCChhhcCCcccchhhhhccCCcceeCCCch---------hhcccCCcEEEEEECCCCCCCCcccccCCHH
Confidence 9999999999999999999999999999999999999999 4899999999999999999999999999999
Q ss_pred HHHHHCCCCeEeccchHHHHHHHHhcCceeEEEEeCCCCChhhhhhhc-ccCCCCcCCccceeeecceEEeCC--CC-Ce
Q psy1128 82 EWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLAVTVEDL-VFVDPNRGNLVDQVSTKEVVTYNP--TG-SV 157 (337)
Q Consensus 82 ~~L~~~~ipgi~gvDTRaLt~~iR~~G~~~g~i~~~~~~~~~~~~~~~-~~~~~~~~~lv~~VS~~~~~~~~~--~~-~~ 157 (337)
+||+++|||||+|||||||||+||++|+|+|+|+++.. +.+.+.+.+ ..+.+...|||++|||+++|.+++ ++ .+
T Consensus 96 ~~l~~~~i~gi~gvDTR~lt~~iR~~G~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~ 174 (358)
T TIGR01368 96 QFLKRHGIPGIYGVDTRALVKKIREKGTMKGVISTEDS-NDEELVQKASVSPDIDGINLVAEVSTKEPYTWGQKRGGKKK 174 (358)
T ss_pred HHHHHCCCceEeCCcHHHHHHHHHhcCCeeEEEecCCC-ChHHHHHHHHhCCCCccCCccceeccCCCEEeCCCCCCCcc
Confidence 99999999999999999999999999999999987543 333322222 567777789999999999999964 22 26
Q ss_pred eEEEEecCCcchHHHHHHHCCCEEEEecCCCCC-----------------------------------------------
Q psy1128 158 HLCVVDCGLKYNQLRCLIQRGAKLSVIPWNHPI----------------------------------------------- 190 (337)
Q Consensus 158 ~I~viDfGiK~~ilr~L~~~G~~v~vvP~~~~~----------------------------------------------- 190 (337)
+|+++|||+|+||+|.|.++||+++++|++.++
T Consensus 175 ~i~viD~G~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~pDGIiLSgGPgdp~~~~~~i~~i~~~~~~~PILGIClG~Q 254 (358)
T TIGR01368 175 RVVVIDFGVKQNILRRLVKRGCEVTVVPYDTDAEEIKKYNPDGIFLSNGPGDPAAVEPAIETIRKLLEKIPIFGICLGHQ 254 (358)
T ss_pred EEEEEeCCcHHHHHHHHHHCCCEEEEEcCCCCHHHHHhhCCCEEEECCCCCCHHHHHHHHHHHHHHHcCCCEEEECHHHH
Confidence 999999999999999999999999999998765
Q ss_pred ----------------------------------------------CCC-CceeeEEEeCCCCceEEEeecCCcEEEEcc
Q psy1128 191 ----------------------------------------------KVP-QGWQPLFTNANDGTNEGIVHESLPFFSVQF 223 (337)
Q Consensus 191 ----------------------------------------------sL~-~~l~vt~~n~nDgtvEGi~h~~~pi~gVQf 223 (337)
+|| ++|+++|+++|||+||||+|+++|+|||||
T Consensus 255 lLa~a~Gg~v~kl~~gh~G~nhpV~~~~~~~v~itsqnH~~aV~~~~l~~~~l~vta~~~nDg~Vegi~h~~~pi~gVQf 334 (358)
T TIGR01368 255 LLALAFGAKTYKMKFGHRGGNHPVKDLITGRVEITSQNHGYAVDPDSLPAGDLEVTHVNLNDGTVEGIRHKDLPVFSVQY 334 (358)
T ss_pred HHHHHhCCceeccCcCcCCCceeeEECCCCcEEEeecCCCcEEcccccCCCceEEEEEECCCCcEEEEEECCCCEEEEEE
Confidence 456 579999999999999999999999999999
Q ss_pred CCCCCCCCcCHHHHHHHHHHHHH
Q psy1128 224 HPEHTAGPADLELLFDIFINAVR 246 (337)
Q Consensus 224 HPEa~pgp~d~~~lF~~Fi~~~~ 246 (337)
|||+.+||+|+.+||++|+++|+
T Consensus 335 HPE~~~gp~d~~~lF~~F~~~~~ 357 (358)
T TIGR01368 335 HPEASPGPHDTEYLFDEFIDLIK 357 (358)
T ss_pred CCCCCCCCCChHHHHHHHHHHhh
Confidence 99999999999999999999875
No 4
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=100.00 E-value=1.3e-81 Score=620.62 Aligned_cols=239 Identities=36% Similarity=0.666 Sum_probs=218.6
Q ss_pred cEEEecCCCCccccccCccccCeEeeecccceeeecCCCCCcccccccccccccCceEEEEEecccCCCCCCcCCcCCHH
Q psy1128 2 RYVFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLIVGDMCDTPSHWNSASTLG 81 (337)
Q Consensus 2 EvVFnT~MtGYqE~lTDPSy~gQiv~~TyP~IGNyGi~~~d~~~~~~~~~~ES~~~~~~g~iv~e~~~~~s~~~~~~sl~ 81 (337)
|||||||||||||+||||||+|||||||||||||||||++ ++||++||++|+||||+|+.|||||+++||+
T Consensus 31 EvvF~T~mtGYqE~lTDPSy~gQiv~~T~P~iGNyGv~~~---------~~es~~~~~~g~iv~e~~~~~s~~~~~~sl~ 101 (382)
T CHL00197 31 EVVFNTGMTGYQEIITDPSYFEQIVTFTYPEIGNTGINLE---------DIESVKIQVKGIIAKNICKSSSNWRQQESLV 101 (382)
T ss_pred EEEEeCCCCCCCccccCcccccceeeeccCCcceecCChh---------hhcccCccEEEEEECCCCCCCCcccccCCHH
Confidence 9999999999999999999999999999999999999999 4899999999999999999999999999999
Q ss_pred HHHHHCCCCeEeccchHHHHHHHHhcCceeEEEEeCCCCChhhhhhhc-ccCCCCcCCccceeeecceEEeCCC------
Q psy1128 82 EWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLAVTVEDL-VFVDPNRGNLVDQVSTKEVVTYNPT------ 154 (337)
Q Consensus 82 ~~L~~~~ipgi~gvDTRaLt~~iR~~G~~~g~i~~~~~~~~~~~~~~~-~~~~~~~~~lv~~VS~~~~~~~~~~------ 154 (337)
+||+++|||||+|||||||||+||++|+|+|+|+++.. +.+.+.+.+ .+++++..|||++|||+++|.++++
T Consensus 102 ~~l~~~~ipgi~gvDTR~lt~~iR~~G~~~g~i~~~~~-~~~~~~~~~~~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~ 180 (382)
T CHL00197 102 SYLQRHKIPFIFGIDTRALTQHLRRFGTMNGCISNQNL-NLSYLRAKIKESPHMPSSDLIPRVTTSSYYEWDEKSHPSFY 180 (382)
T ss_pred HHHHHCCCceEeCCcHHHHHHHHHhcCCceEEEEcCCC-ChHHHHHHHHcCCCCccCCccceecCCCCEEecCCCccccc
Confidence 99999999999999999999999999999999998553 333333333 6778888999999999999998532
Q ss_pred ----------CCeeEEEEecCCcchHHHHHHHCCCEEEEecCCCCC----------------------------------
Q psy1128 155 ----------GSVHLCVVDCGLKYNQLRCLIQRGAKLSVIPWNHPI---------------------------------- 190 (337)
Q Consensus 155 ----------~~~~I~viDfGiK~~ilr~L~~~G~~v~vvP~~~~~---------------------------------- 190 (337)
.++||++||||.|+||+|.|.++||+|+|+|++++.
T Consensus 181 ~~~~~~~~~~~~~~I~viD~g~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~ 260 (382)
T CHL00197 181 LADNKRPHSSYQLKIIVIDFGVKYNILRRLKSFGCSITVVPATSPYQDILSYQPDGILLSNGPGDPSAIHYGIKTVKKLL 260 (382)
T ss_pred cccccccccCCCCEEEEEECCcHHHHHHHHHHCCCeEEEEcCCCCHHHHhccCCCEEEEcCCCCChhHHHHHHHHHHHHH
Confidence 257999999999999999999999999999999875
Q ss_pred ----------------------------------------------------------CCCC-ceeeEEEeCCCCceEEE
Q psy1128 191 ----------------------------------------------------------KVPQ-GWQPLFTNANDGTNEGI 211 (337)
Q Consensus 191 ----------------------------------------------------------sL~~-~l~vt~~n~nDgtvEGi 211 (337)
+++. +++++++++||++||||
T Consensus 261 ~~~~PilGIClGhQlLa~a~Gg~v~k~~~Gh~g~n~pv~~~~~v~itsq~H~~~v~~~sv~~~~~~vt~~~~nDgtvegi 340 (382)
T CHL00197 261 KYNIPIFGICMGHQILSLALEAKTFKLKFGHRGLNHPSGLNQQVEITSQNHGFAVNLESLAKNKFYITHFNLNDGTVAGI 340 (382)
T ss_pred hCCCCEEEEcHHHHHHHHHhCCEEeccCCCCCCCCEecCCCCceEEeecchheEeeccccCCCCcEEEEEECCCCCEEEE
Confidence 5664 69999999999999999
Q ss_pred eecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHhccC
Q psy1128 212 VHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSKT 250 (337)
Q Consensus 212 ~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~~k~ 250 (337)
+|+++|+||||||||+.+||+|..+||++|++++++.+.
T Consensus 341 ~h~~~pi~gVQFHPE~~~gp~d~~~lf~~Fv~~~~~~~~ 379 (382)
T CHL00197 341 SHSPKPYFSVQYHPEASPGPHDADYLFEYFIEIIKHSKS 379 (382)
T ss_pred EECCCCcEEEeeCCCCCCCCCCHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999986553
No 5
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=100.00 E-value=1e-81 Score=618.18 Aligned_cols=234 Identities=41% Similarity=0.688 Sum_probs=215.7
Q ss_pred cEEEecCCCCccccccCccccCeEeeecccceeeecCCCCCcccccccccccccCceEEEEEecccCCCCCCcCCcCCHH
Q psy1128 2 RYVFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLIVGDMCDTPSHWNSASTLG 81 (337)
Q Consensus 2 EvVFnT~MtGYqE~lTDPSy~gQiv~~TyP~IGNyGi~~~d~~~~~~~~~~ES~~~~~~g~iv~e~~~~~s~~~~~~sl~ 81 (337)
|||||||||||||+||||||+|||||||||||||||||.+ ++||++||++|+||||+|+.||||++.+||+
T Consensus 29 E~vF~T~mtGY~E~lTDPSy~gQi~~~t~P~iGnyGv~~~---------~~es~~~~~~g~vv~~~~~~~s~~~~~~~l~ 99 (360)
T PRK12564 29 EVVFNTSMTGYQEILTDPSYAGQIVTFTYPLIGNYGVNRE---------DFESDRPHAKGLIVRELSDIPSNWRSEMSLD 99 (360)
T ss_pred EEEEECCcCCccccccCccccceeeeecccCceEECCCcc---------ccccCCccEEEEEECcCCCCCCccccccCHH
Confidence 9999999999999999999999999999999999999998 4899999999999999999999999999999
Q ss_pred HHHHHCCCCeEeccchHHHHHHHHhcCceeEEEEeCCCCChhhhhhhc-ccCCCCcCCccceeeecceEEeCCC---CCe
Q psy1128 82 EWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLAVTVEDL-VFVDPNRGNLVDQVSTKEVVTYNPT---GSV 157 (337)
Q Consensus 82 ~~L~~~~ipgi~gvDTRaLt~~iR~~G~~~g~i~~~~~~~~~~~~~~~-~~~~~~~~~lv~~VS~~~~~~~~~~---~~~ 157 (337)
+||+++|||||+|||||+|||+||++|+|+|+|+++.. +.+.+.+.+ .+++++..|||++|||+++|.++++ +++
T Consensus 100 ~~l~~~~ipgi~gvDTR~l~~~iR~~G~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~ 178 (360)
T PRK12564 100 EYLKENGIPGISGIDTRALTRKLREKGAMKGVIATEDF-DAEELLEKARAFPGLLGLDLVKEVSTKEPYPWPGPGGELKY 178 (360)
T ss_pred HHHHHCCCCCCCCCcHHHHHHHHHhcCCceEEEecCCC-CHHHHHHHHHcCCCCcccCCcceeCCCCCEECCCCCCCCCC
Confidence 99999999999999999999999999999999988643 323333333 5778888999999999999998532 257
Q ss_pred eEEEEecCCcchHHHHHHHCCCEEEEecCCCCC-----------------------------------------------
Q psy1128 158 HLCVVDCGLKYNQLRCLIQRGAKLSVIPWNHPI----------------------------------------------- 190 (337)
Q Consensus 158 ~I~viDfGiK~~ilr~L~~~G~~v~vvP~~~~~----------------------------------------------- 190 (337)
||+++|||+|+||+|.|.++||+++++|++++.
T Consensus 179 ~I~viD~G~k~nivr~L~~~G~~v~vvp~~~~~~~i~~~~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilGIClG~ 258 (360)
T PRK12564 179 KVVAIDFGVKRNILRELAERGCRVTVVPATTTAEEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKKIPIFGICLGH 258 (360)
T ss_pred EEEEEeCCcHHHHHHHHHHCCCEEEEEeCCCCHHHHHhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEECHHH
Confidence 999999999999999999999999999998754
Q ss_pred -----------------------------------------------CCCCceeeEEEeCCCCceEEEeecCCcEEEEcc
Q psy1128 191 -----------------------------------------------KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQF 223 (337)
Q Consensus 191 -----------------------------------------------sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQf 223 (337)
+||++|+++++|+||++||||+|+++|+|||||
T Consensus 259 QlLa~a~Gg~v~kl~~gh~G~~~pv~~~~~~~~~its~~H~~~V~~~~lp~~l~v~a~~~~Dg~iegi~~~~~pi~gVQf 338 (360)
T PRK12564 259 QLLALALGAKTYKMKFGHRGANHPVKDLETGKVEITSQNHGFAVDEDSLPANLEVTHVNLNDGTVEGLRHKDLPAFSVQY 338 (360)
T ss_pred HHHHHHhCCcEeccCCCccCCceeeEECCCCcEEEEecCcccEEcccccCCceEEEEEeCCCCcEEEEEECCCCEEEEEe
Confidence 578889999999999999999999999999999
Q ss_pred CCCCCCCCcCHHHHHHHHHHHH
Q psy1128 224 HPEHTAGPADLELLFDIFINAV 245 (337)
Q Consensus 224 HPEa~pgp~d~~~lF~~Fi~~~ 245 (337)
|||+.+||+|+.+||++|+++|
T Consensus 339 HPE~~~gp~d~~~lF~~F~~~~ 360 (360)
T PRK12564 339 HPEASPGPHDSAYLFDEFVELM 360 (360)
T ss_pred CCcCCCCCCCHHHHHHHHHHhC
Confidence 9999999999999999999875
No 6
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=9.4e-82 Score=624.61 Aligned_cols=227 Identities=34% Similarity=0.573 Sum_probs=207.5
Q ss_pred cEEEecCCCCccccccCccccCeEeeecccceeeecCCCCCcccccccccccccCceEEEEEecccCCCCCCcCCcCCHH
Q psy1128 2 RYVFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLIVGDMCDTPSHWNSASTLG 81 (337)
Q Consensus 2 EvVFnT~MtGYqE~lTDPSy~gQiv~~TyP~IGNyGi~~~d~~~~~~~~~~ES~~~~~~g~iv~e~~~~~s~~~~~~sl~ 81 (337)
|||||||||||||+||||||+||||+||||||||||||.+| +||++||++|+||||+|+.|||||+.+||+
T Consensus 81 EvVFnT~mtGYqE~lTDPSY~GQiv~~T~P~IGNyGvn~~d---------~ES~~~~~~G~vv~e~~~~~s~~~~~~sL~ 151 (415)
T PLN02771 81 EVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDD---------EESRQCFLAGLVIRSLSISTSNWRCTKTLG 151 (415)
T ss_pred EEEEeCCCCcCChhhcCccccchhhhhcccCccccCCCchh---------hcccCCcEEEEEeCcCCCCCCcccccCCHH
Confidence 99999999999999999999999999999999999999994 899999999999999999999999999999
Q ss_pred HHHHHCCCCeEeccchHHHHHHHHhcCceeEEEEeCCCCChhhhhhhc-ccCCCCcCCccceeeecceEEeCCC------
Q psy1128 82 EWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLAVTVEDL-VFVDPNRGNLVDQVSTKEVVTYNPT------ 154 (337)
Q Consensus 82 ~~L~~~~ipgi~gvDTRaLt~~iR~~G~~~g~i~~~~~~~~~~~~~~~-~~~~~~~~~lv~~VS~~~~~~~~~~------ 154 (337)
+||+++|||||+|||||+|||+||++|+|+|+|++++..+.+++.+.+ .+ +++..|||++|||+++|.+.++
T Consensus 152 ~~L~~~~ipgI~giDTRaLt~~iR~~G~m~g~i~~~~~~~~~~~~~~~~~~-~~~~~~lv~~Vs~~~~~~~~~~~~~~~~ 230 (415)
T PLN02771 152 DYLAERNIMGIYDVDTRAITRRLREDGSLIGVLSTEDSKTDEELLKMSRSW-DIVGIDLISGVSCKSPYEWVDKTNPEWD 230 (415)
T ss_pred HHHHHcCCcceecCcHHHHHHHHHhcCCeeEEEecCCCCCHHHHHHHHHhC-CCccCCccceecCCCCEEecCCCccccc
Confidence 999999999999999999999999999999999875421223323332 34 7778899999999999998522
Q ss_pred -------C-CeeEEEEecCCcchHHHHHHHCCCEEEEecCCCCC------------------------------------
Q psy1128 155 -------G-SVHLCVVDCGLKYNQLRCLIQRGAKLSVIPWNHPI------------------------------------ 190 (337)
Q Consensus 155 -------~-~~~I~viDfGiK~~ilr~L~~~G~~v~vvP~~~~~------------------------------------ 190 (337)
+ .+||+++|||+|+||+|+|.++||+++|+|+++++
T Consensus 231 ~~~~~~~~~~~~IvviD~G~K~nIlr~L~~~G~~v~VvP~~~~~~ei~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~~~ 310 (415)
T PLN02771 231 FNTNSRDGESYHVIAYDFGIKHNILRRLASYGCKITVVPSTWPASEALKMKPDGVLFSNGPGDPSAVPYAVETVKELLGK 310 (415)
T ss_pred ccccccCCCCCEEEEECCChHHHHHHHHHHcCCeEEEECCCCCHHHHhhcCCCEEEEcCCCCChhHhhHHHHHHHHHHhC
Confidence 1 26999999999999999999999999999999875
Q ss_pred ---------------------------------------------------------CCCCceeeEEEeCCCCceEEEee
Q psy1128 191 ---------------------------------------------------------KVPQGWQPLFTNANDGTNEGIVH 213 (337)
Q Consensus 191 ---------------------------------------------------------sL~~~l~vt~~n~nDgtvEGi~h 213 (337)
+||++++++|+|+|||+||||+|
T Consensus 311 iPIlGICLGhQlLa~AlGGkv~K~~~Gh~G~n~pV~~~~~~~v~itsqnHg~aVd~~sLp~~~~vt~~nlnDgtvegi~~ 390 (415)
T PLN02771 311 VPVFGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNNRTGRVEISAQNHNYAVDPASLPEGVEVTHVNLNDGSCAGLAF 390 (415)
T ss_pred CCEEEEcHHHHHHHHhcCCeEEECCCCcccceEEEEECCCCCEEEEecCHHHhhccccCCCceEEEEEeCCCCcEEEEEE
Confidence 67889999999999999999999
Q ss_pred cCCcEEEEccCCCCCCCCcCHHHHH
Q psy1128 214 ESLPFFSVQFHPEHTAGPADLELLF 238 (337)
Q Consensus 214 ~~~pi~gVQfHPEa~pgp~d~~~lF 238 (337)
+++|+||||||||+.|||+|+.+||
T Consensus 391 ~~~pi~gVQFHPEa~pgp~Ds~~~F 415 (415)
T PLN02771 391 PALNVMSLQYHPEASPGPHDSDNAF 415 (415)
T ss_pred CCCCEEEEEcCCCCCCCCCcChhhC
Confidence 9999999999999999999999887
No 7
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=100.00 E-value=3.2e-80 Score=606.23 Aligned_cols=231 Identities=41% Similarity=0.702 Sum_probs=211.5
Q ss_pred cEEEecCCCCccccccCccccCeEeeecccceeeecCCCCCcccccccccccccCceEEEEEecccCCCCCCcCCcCCHH
Q psy1128 2 RYVFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLIVGDMCDTPSHWNSASTLG 81 (337)
Q Consensus 2 EvVFnT~MtGYqE~lTDPSy~gQiv~~TyP~IGNyGi~~~d~~~~~~~~~~ES~~~~~~g~iv~e~~~~~s~~~~~~sl~ 81 (337)
|||||||||||||+||||||+|||||||||||||||||++ ++||++||++|+||||+|+.|||||+++||+
T Consensus 27 E~vf~T~mtGYqe~ltDpsy~gQi~~~t~P~iGnyGi~~~---------~~es~~~~~~g~vv~~~~~~~s~~~~~~~l~ 97 (354)
T PRK12838 27 EIVFNTGMTGYQEVLTDPSYKGQIVVFTYPLIGNYGINAD---------DYESKQPQVKGVIVYELSREGSHYRAKQSLD 97 (354)
T ss_pred EEEEeCCCCCCCccccCCccccceeecccCCccEeCCCch---------hhcccCceEEEEEECcCCCCCCcccccCCHH
Confidence 9999999999999999999999999999999999999999 4899999999999999999999999999999
Q ss_pred HHHHHCCCCeEeccchHHHHHHHHhcCceeEEEEeCCCCChhhhhhhc-ccCCCCcCCccceeeecceEEeCCCCCeeEE
Q psy1128 82 EWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLAVTVEDL-VFVDPNRGNLVDQVSTKEVVTYNPTGSVHLC 160 (337)
Q Consensus 82 ~~L~~~~ipgi~gvDTRaLt~~iR~~G~~~g~i~~~~~~~~~~~~~~~-~~~~~~~~~lv~~VS~~~~~~~~~~~~~~I~ 160 (337)
+||+++|||||+|||||+|||+||++|+|+|+|+++.+ .+. .+.+ .+ ++..|||++|||+++|.++.. +++|+
T Consensus 98 ~~l~~~~i~gi~giDTR~lt~~lR~~G~~~~~i~~~~~--~~~-~~~~~~~--~~~~~~v~~vs~~~~~~~~~~-~~~V~ 171 (354)
T PRK12838 98 DFLKEWNIPGISGVDTRALVKHIREKGTMKASITTTDD--AHA-FDQIKAL--VLPKNVVAQVSTKEPYTYGNG-GKHVA 171 (354)
T ss_pred HHHHHCCCCcccCCCHHHHHHHHHHcCCceEEEecCCc--HHH-HHHHHhh--hccCCcccEEEcCCCEEeCCC-CCEEE
Confidence 99999999999999999999999999999999998542 121 1222 23 667899999999999998744 47999
Q ss_pred EEecCCcchHHHHHHHCCCEEEEecCCCCC--------------------------------------------------
Q psy1128 161 VVDCGLKYNQLRCLIQRGAKLSVIPWNHPI-------------------------------------------------- 190 (337)
Q Consensus 161 viDfGiK~~ilr~L~~~G~~v~vvP~~~~~-------------------------------------------------- 190 (337)
++|||.|+||++.|.++||+++++|++++.
T Consensus 172 viD~G~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~~DGIiLsgGPgdp~~~~~~~~~i~~~~~~~PvlGIClG~QlLa 251 (354)
T PRK12838 172 LIDFGYKKSILRSLSKRGCKVTVLPYDTSLEEIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISSYPILGICLGHQLIA 251 (354)
T ss_pred EECCCHHHHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEEcCCCCChHHhHHHHHHHHHHhcCCCEEEECHHHHHHH
Confidence 999999999999999999999999998764
Q ss_pred -------------------------------------------CCCC-ceeeEEEeCCCCceEEEeecCCcEEEEccCCC
Q psy1128 191 -------------------------------------------KVPQ-GWQPLFTNANDGTNEGIVHESLPFFSVQFHPE 226 (337)
Q Consensus 191 -------------------------------------------sL~~-~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPE 226 (337)
+|+. ++++++++++|++||||+|+++|+||||||||
T Consensus 252 ~a~Gg~v~kl~~gh~G~~hpV~~~~~~~~~~ts~~H~~aV~~~sl~~~~l~v~a~~~~Dg~Veai~~~~~pi~gVQfHPE 331 (354)
T PRK12838 252 LALGADTEKLPFGHRGANHPVIDLTTGRVWMTSQNHGYVVDEDSLDGTPLSVRFFNVNDGSIEGLRHKKKPVLSVQFHPE 331 (354)
T ss_pred HHhCCEEecCCCCccCCceEEEECCCCeEEEeccchheEecccccCCCCcEEEEEECCCCeEEEEEECCCCEEEEEeCCC
Confidence 4654 59999999999999999999999999999999
Q ss_pred CCCCCcCHHHHHHHHHHHHHh
Q psy1128 227 HTAGPADLELLFDIFINAVRD 247 (337)
Q Consensus 227 a~pgp~d~~~lF~~Fi~~~~~ 247 (337)
+.++|+|+.+||++|++++++
T Consensus 332 ~~~gp~d~~~lF~~F~~~~~~ 352 (354)
T PRK12838 332 AHPGPHDAEYIFDEFLEMMEK 352 (354)
T ss_pred CCCCCccHHHHHHHHHHHHHh
Confidence 999999999999999999864
No 8
>PF00988 CPSase_sm_chain: Carbamoyl-phosphate synthase small chain, CPSase domain; InterPro: IPR002474 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the small subunit of carbamoyl phosphate synthase. The small subunit has a 3-layer beta/beta/alpha structure, and is thought to be mobile in most proteins that carry it. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity.; GO: 0006807 nitrogen compound metabolic process; PDB: 1CE8_B 1KEE_B 1CS0_D 1T36_D 1M6V_H 1A9X_F 1JDB_I 1BXR_F 1C3O_B 1C30_F ....
Probab=100.00 E-value=2.6e-57 Score=386.21 Aligned_cols=105 Identities=57% Similarity=1.010 Sum_probs=80.6
Q ss_pred cEEEecCCCCccccccCccccCeEeeecccceeeecCCCCCcccccccccccccCceEEEEEecccCCCCCCcCCcCCHH
Q psy1128 2 RYVFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLIVGDMCDTPSHWNSASTLG 81 (337)
Q Consensus 2 EvVFnT~MtGYqE~lTDPSy~gQiv~~TyP~IGNyGi~~~d~~~~~~~~~~ES~~~~~~g~iv~e~~~~~s~~~~~~sl~ 81 (337)
|||||||||||||+||||||+||||+||||||||||+|.+ ++||++|+++|+||||+|+.||||++++||+
T Consensus 27 EvVFnT~MtGYqE~lTDPSY~gQIlvfTyP~IGNyGv~~~---------~~ES~~~~~~g~iv~e~~~~~s~~~~~~sL~ 97 (131)
T PF00988_consen 27 EVVFNTGMTGYQEILTDPSYAGQILVFTYPLIGNYGVNEE---------DFESDRIHVKGLIVRELSDIPSHWRSEMSLD 97 (131)
T ss_dssp EEEEE--SS-HHHHHT-GGGBTEEEEESSSB--TT-B-GG---------G-SSSS--BSEEE-SB--SS---TT-SB-HH
T ss_pred EEEEEccccCCchhhcCCcCCceEEEEeccCCeEEcCCcc---------cCCCCceeeeeeeeccccCCCccccccCCHH
Confidence 9999999999999999999999999999999999999999 5899999999999999999999999999999
Q ss_pred HHHHHCCCCeEeccchHHHHHHHHhcCceeEEEE
Q psy1128 82 EWLRAHNIPALANVDTRRLTKHIRECGVVSGKIV 115 (337)
Q Consensus 82 ~~L~~~~ipgi~gvDTRaLt~~iR~~G~~~g~i~ 115 (337)
+||+++|||||+|||||+|||+||++|+|+|+|+
T Consensus 98 ~~L~~~~ipgi~gvDTRaLt~~lR~~G~m~g~I~ 131 (131)
T PF00988_consen 98 EWLKEHGIPGISGVDTRALTRKLREKGSMKGVIT 131 (131)
T ss_dssp HHHHHTT-EEEESS-HHHHHHHHHHH--EEEEEE
T ss_pred HHHHHCCCeeeeCCcHHHHHHHHHhcCCceEEEC
Confidence 9999999999999999999999999999999985
No 9
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=99.86 E-value=4.4e-23 Score=175.24 Aligned_cols=64 Identities=30% Similarity=0.394 Sum_probs=47.2
Q ss_pred CCccccccccCCCccHHHHHHHcCCCChhHHHHHHHhCCCceeeeeeccccccCCCCCceeEeee
Q psy1128 255 PPIRKTIYDTLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTY 319 (337)
Q Consensus 255 ~~v~~~l~~~~~~~sD~~IA~l~~~~~e~~Vr~~R~~~~I~p~yk~VDtcAgEF~a~TpY~YSTY 319 (337)
.+...++.-|..+|||++||++||++ +.+||++|+++||.|+||+||||||||+|.||||||||
T Consensus 60 ~~~~~L~~aK~~GFsD~~IA~l~~~~-e~~vr~~R~~~~i~p~yk~VDTcA~EF~a~TpY~YstY 123 (123)
T PF02787_consen 60 LDPELLRKAKRLGFSDRQIARLWGVS-EEEVRELRKEHGIVPVYKMVDTCAGEFEAKTPYYYSTY 123 (123)
T ss_dssp --HHHHHHHHHTT--HHHHHHHHTS--HHHHHHHHHHHT---EEEE--SBTTSS--SSEEEEEES
T ss_pred chHHHHHHHHHcCCCHHHHHhccCCC-HHHHHHHHHHcCCceeeeeecCccccccCCCceeeecC
Confidence 33444455566888999999999998 99999999999999999999999999999999999998
No 10
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.81 E-value=2.2e-20 Score=206.01 Aligned_cols=78 Identities=31% Similarity=0.384 Sum_probs=72.4
Q ss_pred ccccccCCCccHHHHHHHcCCCChhHHHHHHHhCCCceeeeeeccccccCCCCCceeEeeecCCcCCCCCCCCeEEEeC
Q psy1128 259 KTIYDTLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTYNATAHDLAVKETVSIIKG 337 (337)
Q Consensus 259 ~~l~~~~~~~sD~~IA~l~~~~~e~~Vr~~R~~~~I~p~yk~VDtcAgEF~a~TpY~YSTY~~e~e~~~~~~kkvlVlG 337 (337)
.+...|..+|||.+||++|+++ +++||++|+++||.|+||+||||||||+|.||||||||+.|+|+.++++|||||||
T Consensus 484 ~~~~~k~~g~~d~~~a~~~~~~-~~~~~~~~~~~~~~~~~k~~d~~a~e~~~~~~~~y~~~~~~~~~~~~~~kkvlilG 561 (1066)
T PRK05294 484 LLREAKRLGFSDARIAKLLGVT-EDEVRKLRKALGIHPVYKRVDTCAAEFEADTPYYYSTYEEECESNPSDRKKVLVLG 561 (1066)
T ss_pred HHHHHHHcCCCHHHHHHHhCcC-HHHHHHHHHHCCCeeEEEeecCCCCcccCCCCcceeECCCCCCCccCCCceEEEEC
Confidence 3444466788999999999998 99999999999999999999999999999999999999999999888899999998
No 11
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.81 E-value=2.4e-20 Score=205.63 Aligned_cols=77 Identities=31% Similarity=0.355 Sum_probs=71.5
Q ss_pred cccccCCCccHHHHHHHcCCCChhHHHHHHHhCCCceeeeeeccccccCCCCCceeEeeecCCcCCCCC-CCCeEEEeC
Q psy1128 260 TIYDTLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTYNATAHDLAV-KETVSIIKG 337 (337)
Q Consensus 260 ~l~~~~~~~sD~~IA~l~~~~~e~~Vr~~R~~~~I~p~yk~VDtcAgEF~a~TpY~YSTY~~e~e~~~~-~~kkvlVlG 337 (337)
+..-|..+|||++||++|+++ +++||++|+++||.|+||+||||||||+|.||||||||+.++|+.++ +++||||||
T Consensus 485 ~~~~k~~gfsd~~ia~~~~~~-~~~v~~~r~~~~~~p~~k~vd~~a~ef~~~t~~~y~ty~~~~~~~~~~~~kkvLIlG 562 (1068)
T PRK12815 485 LRKVKEKGFSDALLAELTGVT-EEEVRALRKKLGIRPSYKMVDTCAAEFEAKTPYYYSTYFGESEAEPSSEKKKVLILG 562 (1068)
T ss_pred HHHHHHcCCCHHHHHHHhCcC-HHHHHHHHHHCCCeeEEEEecCCcCcccCCCCceeeeCCCCCcCccCCCCceEEEec
Confidence 334455788999999999998 99999999999999999999999999999999999999999999887 899999998
No 12
>PLN02735 carbamoyl-phosphate synthase
Probab=99.80 E-value=6.1e-20 Score=202.78 Aligned_cols=76 Identities=26% Similarity=0.343 Sum_probs=71.6
Q ss_pred ccccCCCccHHHHHHHcCCCChhHHHHHHHhCCCceeeeeeccccccCCCCCceeEeeecCCcCCCCCCCCeEEEeC
Q psy1128 261 IYDTLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTYNATAHDLAVKETVSIIKG 337 (337)
Q Consensus 261 l~~~~~~~sD~~IA~l~~~~~e~~Vr~~R~~~~I~p~yk~VDtcAgEF~a~TpY~YSTY~~e~e~~~~~~kkvlVlG 337 (337)
...|..+|||.+||++|+++ +++||++|+++||.|+||+||||||||+|.||||||||+.++|+.++++|||||||
T Consensus 506 ~~~k~~g~~d~~ia~~~~~~-~~~v~~~r~~~~~~~~~k~vd~~a~ef~~~t~y~y~ty~~~~~~~~~~~kkvlilG 581 (1102)
T PLN02735 506 YEVKRRGFSDKQIAFATKST-EKEVRSKRLSLGVTPSYKRVDTCAAEFEANTPYMYSSYDGECESAPTNKKKVLILG 581 (1102)
T ss_pred HHHHHcCCCHHHHHHHhCcC-HHHHHHHHHHCCCEeEEEeeCCCccccCCCCCcceeECCCCCCcccCCCceEEEeC
Confidence 33455788999999999998 99999999999999999999999999999999999999999999889999999998
No 13
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.79 E-value=1.4e-19 Score=199.35 Aligned_cols=77 Identities=32% Similarity=0.413 Sum_probs=69.4
Q ss_pred cccccCCCccHHHHHHHcCCCChhHHHHHHHhCCCceeeeeeccccccCCCCCceeEeeecCC-cCCCCCCCCeEEEeC
Q psy1128 260 TIYDTLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTYNAT-AHDLAVKETVSIIKG 337 (337)
Q Consensus 260 ~l~~~~~~~sD~~IA~l~~~~~e~~Vr~~R~~~~I~p~yk~VDtcAgEF~a~TpY~YSTY~~e-~e~~~~~~kkvlVlG 337 (337)
+..-|..+|||.+||++|+++ +++||++|+++||.|+||+||||||||++.||||||||+.+ ++..++++|||||||
T Consensus 484 ~~~~k~~g~~d~~~a~~~~~~-~~~~~~~~~~~~~~~~~k~vd~~a~e~~~~~~~~y~~~~~~~~~~~~~~~~kvlvlG 561 (1050)
T TIGR01369 484 LRRAKKLGFSDAQIARLIGVT-EAEVRKLRKELGIMPVYKRVDTCAAEFEAQTPYLYSTYEGERDDVPFTDKKKVLVLG 561 (1050)
T ss_pred HHHHHHcCCCHHHHHHHhCcC-HHHHHHHHHHCCCeeEEEeecCCCCcccCCCCeeEecCCCCCCcccCCCCceEEEec
Confidence 334466888999999999998 99999999999999999999999999999999999999988 555556788999998
No 14
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.60 E-value=2.8e-15 Score=133.87 Aligned_cols=84 Identities=50% Similarity=0.873 Sum_probs=76.5
Q ss_pred EEEEecCCcchHHHHHHHCCCEEEEecCCCCC------------------------------------------------
Q psy1128 159 LCVVDCGLKYNQLRCLIQRGAKLSVIPWNHPI------------------------------------------------ 190 (337)
Q Consensus 159 I~viDfGiK~~ilr~L~~~G~~v~vvP~~~~~------------------------------------------------ 190 (337)
|+++|||.++|+++.|.+.|+++.++|++.+.
T Consensus 1 i~i~d~g~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGIC~G~Q 80 (178)
T cd01744 1 VVVIDFGVKHNILRELLKRGCEVTVVPYNTDAEEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGHQ 80 (178)
T ss_pred CEEEecCcHHHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEECHHHH
Confidence 68999999999999999999999999987653
Q ss_pred ----------------------------------------------CCCCceeeEEEeCCCCceEEEeecCCcEEEEccC
Q psy1128 191 ----------------------------------------------KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFH 224 (337)
Q Consensus 191 ----------------------------------------------sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfH 224 (337)
+||+++++++.+.+|+.+|+++|++.|++|||||
T Consensus 81 ~l~~~~Gg~v~~~~~~~~g~~~~v~~~~~~~~~~v~~~H~~~v~~~~lp~~~~v~a~s~~~~~i~a~~~~~~~i~GvQfH 160 (178)
T cd01744 81 LLALALGAKTYKMKFGHRGSNHPVKDLITGRVYITSQNHGYAVDPDSLPGGLEVTHVNLNDGTVEGIRHKDLPVFSVQFH 160 (178)
T ss_pred HHHHHcCCceecCCCCCCCCceeeEEcCCCCcEEEEcCceEEEcccccCCceEEEEEECCCCcEEEEEECCCCeEEEeeC
Confidence 3778899999988899999999999999999999
Q ss_pred CCCCCCCcCHHHHHHHHH
Q psy1128 225 PEHTAGPADLELLFDIFI 242 (337)
Q Consensus 225 PEa~pgp~d~~~lF~~Fi 242 (337)
||+.+++.+...||+.|+
T Consensus 161 PE~~~~~~~~~~lf~~f~ 178 (178)
T cd01744 161 PEASPGPHDTEYLFDEFL 178 (178)
T ss_pred CCCCCCCCCchHhHhhhC
Confidence 999999888888999995
No 15
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.50 E-value=1.1e-13 Score=125.20 Aligned_cols=53 Identities=23% Similarity=0.468 Sum_probs=48.1
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHH
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINA 244 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~ 244 (337)
++|+.|++|+++.+|+.|||++|+++|++||||||||..++.+ ..|++||+++
T Consensus 138 ~lP~~l~vtA~~~d~~~IMai~h~~~pi~gvQFHPESilT~~G-~~il~Nfl~~ 190 (191)
T COG0512 138 TLPEELEVTAESEDGGVIMAVRHKKLPIYGVQFHPESILTEYG-HRILENFLRL 190 (191)
T ss_pred CCCCceEEEEEeCCCCEEEEEeeCCCCEEEEecCCccccccch-HHHHHHHHhh
Confidence 5899999999998778999999999999999999999987666 5699999986
No 16
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.47 E-value=3.5e-13 Score=121.34 Aligned_cols=52 Identities=29% Similarity=0.512 Sum_probs=47.3
Q ss_pred CCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHH
Q psy1128 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAV 245 (337)
Q Consensus 192 L~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~ 245 (337)
||+++++++.+ +|+.+||+++++.|+||||||||+..+ .++..||++|++++
T Consensus 137 lp~~~~~la~s-~~~~i~a~~~~~~~~~gvQfHPE~~~~-~~g~~i~~~F~~~~ 188 (189)
T PRK05670 137 LPDCLEVTAWT-DDGEIMGVRHKELPIYGVQFHPESILT-EHGHKLLENFLELA 188 (189)
T ss_pred CCCceEEEEEe-CCCcEEEEEECCCCEEEEeeCCCcCCC-cchHHHHHHHHHhh
Confidence 78899999998 689999999999999999999999866 56778999999985
No 17
>PLN02335 anthranilate synthase
Probab=99.47 E-value=3.2e-13 Score=125.27 Aligned_cols=58 Identities=21% Similarity=0.306 Sum_probs=49.0
Q ss_pred CCCc-eeeEEEeCCCCceEEEeecCCc-EEEEccCCCCCCCCcCHHHHHHHHHHHHHhccCC
Q psy1128 192 VPQG-WQPLFTNANDGTNEGIVHESLP-FFSVQFHPEHTAGPADLELLFDIFINAVRDSKTR 251 (337)
Q Consensus 192 L~~~-l~vt~~n~nDgtvEGi~h~~~p-i~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~~k~~ 251 (337)
+|.+ +++++.+ +|+.||+++|+++| +||||||||+..++ ++..||++|++++++++.+
T Consensus 160 lp~~~~~v~a~~-~~~~v~ai~~~~~~~i~GvQfHPE~~~~~-~g~~i~~nF~~~~~~~~~~ 219 (222)
T PLN02335 160 FPSDELEVTAWT-EDGLIMAARHRKYKHIQGVQFHPESIITT-EGKTIVRNFIKIIEKKESE 219 (222)
T ss_pred CCCCceEEEEEc-CCCCEEEEEecCCCCEEEEEeCCCCCCCh-hHHHHHHHHHHHHHhhccc
Confidence 4554 8888887 68999999999988 89999999999664 6678999999998876654
No 18
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.46 E-value=5.8e-13 Score=137.77 Aligned_cols=110 Identities=13% Similarity=0.168 Sum_probs=78.8
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHhccCCCCCCCccccccccC-----
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSKTRTPVPPIRKTIYDTL----- 265 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~~k~~~~~~~v~~~l~~~~----- 265 (337)
.||+++++++. .|+.+|+++|+++|+||||||||+..++++ ..||++|++++...++. ..+.+++|.+..
T Consensus 139 ~lP~~l~vlA~--sd~~v~ai~~~~~~i~GVQFHPEs~~T~~G-~~il~NFl~~~~~~~~~--~~~~~~~l~~~~~~~~L 213 (531)
T PRK09522 139 NIPAGLTINAH--FNGMVMAVRHDADRVCGFQFHPESILTTQG-ARLLEQTLAWAQQKLEP--TNTLQPILEKLYQAQTL 213 (531)
T ss_pred cCCCCcEEEEe--cCCCEEEEEECCCCEEEEEecCccccCcch-HHHHHHHHHHHhhcCCC--CCCHHHHHHHhhcCCCC
Confidence 47889999996 489999999999999999999999988654 57999999998744433 667777655433
Q ss_pred --------------CCccHHHHHHHc------CCCChhHH----HHHHHhCC-Cc-eeeeeeccccc
Q psy1128 266 --------------VPKDEALIAKSF------QTPKKTSV----RKMREDNG-IR-PYNKQIDTLAA 306 (337)
Q Consensus 266 --------------~~~sD~~IA~l~------~~~~e~~V----r~~R~~~~-I~-p~yk~VDtcAg 306 (337)
+..+|.|||.++ |.+ .+|+ +.+|+..- +. +....||+|+-
T Consensus 214 t~eea~~~~~~il~g~~~~~qi~AfL~alr~kget-~eEl~g~~~a~~~~~~~~~~~~~~~iD~~gt 279 (531)
T PRK09522 214 SQQESHQLFSAVVRGELKPEQLAAALVSMKIRGEH-PNEIAGAATALLENAAPFPRPDYLFADIVGT 279 (531)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhCCCCCCCCCCcccccCC
Confidence 455888888776 444 5544 45554332 21 22335999853
No 19
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.42 E-value=1.3e-12 Score=117.95 Aligned_cols=51 Identities=24% Similarity=0.324 Sum_probs=45.2
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHH
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFIN 243 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~ 243 (337)
+||+++++++.+ .||.+||++|+++|++|||||||+..++ ++..||++|++
T Consensus 136 ~lp~~~~v~a~~-~~~~i~a~~~~~~~i~GvQfHPE~~~t~-~G~~il~nFl~ 186 (187)
T PRK08007 136 SLPACFEVTAWS-ETREIMGIRHRQWDLEGVQFHPESILSE-QGHQLLANFLH 186 (187)
T ss_pred CCCCCeEEEEEe-CCCcEEEEEeCCCCEEEEEeCCcccCCc-chHHHHHHHhh
Confidence 468899999998 4899999999999999999999998775 55689999986
No 20
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.39 E-value=2.2e-12 Score=116.45 Aligned_cols=52 Identities=25% Similarity=0.344 Sum_probs=45.7
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHH
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFIN 243 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~ 243 (337)
++|+++++++.+.+++.+||++|+++|+||||||||+..++ .+..||++|+.
T Consensus 136 ~l~~~~~v~a~s~~~~~v~a~~~~~~~i~gvQfHPE~~~t~-~G~~il~nfl~ 187 (188)
T TIGR00566 136 TLPTCFPVTAWEEENIEIMAIRHRDLPLEGVQFHPESILSE-QGHQLLANFLH 187 (188)
T ss_pred cCCCceEEEEEcCCCCEEEEEEeCCCCEEEEEeCCCccCCc-ccHHHHHHHHh
Confidence 56778999999976679999999999999999999998875 45579999985
No 21
>CHL00101 trpG anthranilate synthase component 2
Probab=99.37 E-value=2.9e-12 Score=115.70 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=44.7
Q ss_pred CCCceeeEEEeCCCCceEEEeecCCc-EEEEccCCCCCCCCcCHHHHHHHHHHH
Q psy1128 192 VPQGWQPLFTNANDGTNEGIVHESLP-FFSVQFHPEHTAGPADLELLFDIFINA 244 (337)
Q Consensus 192 L~~~l~vt~~n~nDgtvEGi~h~~~p-i~gVQfHPEa~pgp~d~~~lF~~Fi~~ 244 (337)
||+++++++.+ +|+.+||++|+++| +||||||||+..++ .+..||++|+++
T Consensus 137 lp~~~~vla~s-~~~~v~a~~~~~~~~i~gvQfHPE~~~~~-~g~~l~~nf~~~ 188 (190)
T CHL00101 137 LPSPLEITAWT-EDGLIMACRHKKYKMLRGIQFHPESLLTT-HGQQILRNFLSL 188 (190)
T ss_pred CCCceEEEEEc-CCCcEEEEEeCCCCCEEEEEeCCccCCCh-hHHHHHHHHHhh
Confidence 67889999986 68999999999999 99999999998655 456799999875
No 22
>PLN02347 GMP synthetase
Probab=99.37 E-value=2.4e-12 Score=133.22 Aligned_cols=90 Identities=20% Similarity=0.359 Sum_probs=79.2
Q ss_pred eEEEEecCCcc--hHHHHHHHCCCEEEEecCCCCC---------------------------------------------
Q psy1128 158 HLCVVDCGLKY--NQLRCLIQRGAKLSVIPWNHPI--------------------------------------------- 190 (337)
Q Consensus 158 ~I~viDfGiK~--~ilr~L~~~G~~v~vvP~~~~~--------------------------------------------- 190 (337)
+|++||||.++ +|.|.|+++|+.+.++|++.+.
T Consensus 12 ~IlIID~G~~~t~~I~r~lrelgv~~~v~p~~~~~~~i~~~~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPILG 91 (536)
T PLN02347 12 VVLILDYGSQYTHLITRRVRELGVYSLLLSGTASLDRIASLNPRVVILSGGPHSVHVEGAPTVPEGFFDYCRERGVPVLG 91 (536)
T ss_pred EEEEEECCCcHHHHHHHHHHHCCCeEEEEECCCCHHHHhcCCCCEEEECCCCCcccccCCchhhHHHHHHHHhcCCcEEE
Confidence 79999999997 5999999999999999998765
Q ss_pred ----------------------------------------------------------CCCCceeeEEEeCCCCceEEEe
Q psy1128 191 ----------------------------------------------------------KVPQGWQPLFTNANDGTNEGIV 212 (337)
Q Consensus 191 ----------------------------------------------------------sL~~~l~vt~~n~nDgtvEGi~ 212 (337)
+||+++++++.+. |+.++|++
T Consensus 92 IClG~QlLa~alGG~V~~~~~~e~G~~~v~i~~~~~Lf~~l~~~~~~~v~~~Hsd~V~~lP~g~~vlA~s~-~~~iaai~ 170 (536)
T PLN02347 92 ICYGMQLIVQKLGGEVKPGEKQEYGRMEIRVVCGSQLFGDLPSGETQTVWMSHGDEAVKLPEGFEVVAKSV-QGAVVAIE 170 (536)
T ss_pred ECHHHHHHHHHcCCEEEecCCcccceEEEEEcCCChhhhcCCCCceEEEEEEEEEEeeeCCCCCEEEEEeC-CCcEEEEE
Confidence 5778899999884 89999999
Q ss_pred ecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHhcc
Q psy1128 213 HESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSK 249 (337)
Q Consensus 213 h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~~k 249 (337)
|++.|+||||||||..+++++. .|+++|+..+.+.+
T Consensus 171 ~~~~~i~GvQFHPE~~~t~~G~-~iL~NFl~~ic~~~ 206 (536)
T PLN02347 171 NRERRIYGLQYHPEVTHSPKGM-ETLRHFLFDVCGVT 206 (536)
T ss_pred ECCCCEEEEEccCCCCccchHH-HHHHHHHHHHhCcC
Confidence 9999999999999999887655 69999997776544
No 23
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.35 E-value=7.2e-12 Score=114.00 Aligned_cols=55 Identities=27% Similarity=0.375 Sum_probs=48.3
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHh
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRD 247 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~ 247 (337)
+||+++++++.+ +|+.+||++|+++|+||||||||+..++ ++..||++|++.+..
T Consensus 136 ~lp~~~~~~a~s-~~~~v~a~~~~~~~i~gvQFHPE~~~t~-~g~~il~nfl~~~~~ 190 (195)
T PRK07649 136 TLPDCLEVTSWT-EEGEIMAIRHKTLPIEGVQFHPESIMTS-HGKELLQNFIRKYSP 190 (195)
T ss_pred cCCCCeEEEEEc-CCCcEEEEEECCCCEEEEEECCCCCCCc-cHHHHHHHHHHHhHh
Confidence 478899999987 6899999999999999999999998875 566899999998753
No 24
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.34 E-value=5e-12 Score=113.50 Aligned_cols=52 Identities=31% Similarity=0.537 Sum_probs=45.9
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHH
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINA 244 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~ 244 (337)
+||+++++++.+. |+.++|+++++.|++|+|||||...++ ++..||++|+..
T Consensus 132 ~l~~~~~vla~~~-~~~v~a~~~~~~~~~g~QfHPE~~~~~-~g~~i~~~f~~~ 183 (188)
T TIGR00888 132 ELPEGFKVLATSD-NCPVAAMAHEEKPIYGVQFHPEVTHTE-YGNELLENFVYD 183 (188)
T ss_pred cCCCCCEEEEECC-CCCeEEEEECCCCEEEEeeCCccCCCh-hhHHHHHHHHHH
Confidence 5788899999885 799999999999999999999998775 467899999984
No 25
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.33 E-value=1e-11 Score=112.04 Aligned_cols=52 Identities=31% Similarity=0.475 Sum_probs=44.1
Q ss_pred CCCCceeeEEEeCCCCc---eEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHH
Q psy1128 191 KVPQGWQPLFTNANDGT---NEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFIN 243 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgt---vEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~ 243 (337)
+||+++++++.+.+|++ +++++|+++|+||||||||+..++ ++..||++|++
T Consensus 136 ~lp~~~~vlA~s~~d~~~~~i~~~~~~~~~i~GvQfHPE~~~~~-~G~~i~~nf~~ 190 (191)
T PRK06774 136 SLPGCFELTAWSERGGEMDEIMGIRHRTLPLEGVQFHPESILSE-QGHQLLDNFLK 190 (191)
T ss_pred CCCCCeEEEEEeCCCCCcceEEEEEeCCCCEEEEEECCCcCCCc-cHHHHHHHHhh
Confidence 36778999999877764 678899999999999999998786 55789999985
No 26
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.32 E-value=1.4e-11 Score=127.61 Aligned_cols=107 Identities=26% Similarity=0.397 Sum_probs=74.4
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHhccCCCCCCCccccccccC-----
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSKTRTPVPPIRKTIYDTL----- 265 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~~k~~~~~~~v~~~l~~~~----- 265 (337)
+||+++++++.+ +|+.|||++|+++|+||||||||+.. +.++..||++|++.+.. .-+.++.|.+..
T Consensus 137 ~lp~~~~vlA~s-~d~~i~a~~~~~~pi~GvQFHPE~~~-t~~g~~i~~nFl~~~~~------~~~~~~~i~~l~~g~~L 208 (534)
T PRK14607 137 SLPECLEVTAKS-DDGEIMGIRHKEHPIFGVQFHPESIL-TEEGKRILKNFLNYQRE------EIDIKSYLKKLVEGEDL 208 (534)
T ss_pred cCCCCeEEEEEc-CCCCEEEEEECCCCEEEEEeCCCCCC-ChhHHHHHHHHHHHhhc------cCCHHHHHHHhccCCCC
Confidence 478899999988 68999999999999999999999864 46777899999998742 112233322211
Q ss_pred --------------CCccHHHHHHHc------CCCChhHH----HHHHHhCC-Cc-eeeeeeccccc
Q psy1128 266 --------------VPKDEALIAKSF------QTPKKTSV----RKMREDNG-IR-PYNKQIDTLAA 306 (337)
Q Consensus 266 --------------~~~sD~~IA~l~------~~~~e~~V----r~~R~~~~-I~-p~yk~VDtcAg 306 (337)
+..+|.|||.++ |.+ .+|+ +.+|+... +. |.-..||+|+-
T Consensus 209 t~~ea~~~~~~il~g~~~~~q~~AfL~alr~kget-~~El~g~~~a~~~~~~~~~~~~~~~~D~~gt 274 (534)
T PRK14607 209 SFEEAEDVMEDITDGNATDAQIAGFLTALRMKGET-ADELAGFASVMREKSRHIPAPSPRTVDTCGT 274 (534)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhCCcCCCCCCCceEEccC
Confidence 455888987776 444 4444 45565543 21 22347999853
No 27
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.32 E-value=1.1e-11 Score=112.19 Aligned_cols=53 Identities=28% Similarity=0.423 Sum_probs=45.4
Q ss_pred CCCCceeeEEEeCC-CC---ceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHH
Q psy1128 191 KVPQGWQPLFTNAN-DG---TNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINA 244 (337)
Q Consensus 191 sL~~~l~vt~~n~n-Dg---tvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~ 244 (337)
+||+++++++.+.+ |+ .|||++|+++|+||||||||+..++. +..||++|++.
T Consensus 136 ~lp~~~~v~a~s~~~~~~~~~i~~~~~~~~pi~gvQfHPE~~~t~~-g~~i~~nFl~~ 192 (193)
T PRK08857 136 TLPECFELTAWTELEDGSMDEIMGFQHKTLPIEAVQFHPESIKTEQ-GHQLLANFLAR 192 (193)
T ss_pred CCCCCeEEEEEecCcCCCcceEEEEEeCCCCEEEEeeCCCcCCCcc-hHHHHHHHHhh
Confidence 47889999998863 44 59999999999999999999998765 67899999874
No 28
>PRK00758 GMP synthase subunit A; Validated
Probab=99.31 E-value=1.3e-11 Score=110.36 Aligned_cols=55 Identities=27% Similarity=0.480 Sum_probs=48.0
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHh
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRD 247 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~ 247 (337)
+||+++++.+.+ +|+.|||+++++.|++|||||||...+ +++..||++|++.+..
T Consensus 129 ~l~~~~~~la~~-~~~~v~a~~~~~~~~~g~QfHPE~~~~-~~g~~l~~~f~~~~~~ 183 (184)
T PRK00758 129 ELPDGFEILARS-DICEVEAMKHKEKPIYGVQFHPEVAHT-EYGEEIFKNFLEICGK 183 (184)
T ss_pred hCCCCCEEEEEC-CCCCEEEEEECCCCEEEEEcCCccCCC-chHHHHHHHHHHHHcc
Confidence 678889999987 589999999999999999999999876 4667899999987654
No 29
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.30 E-value=1.6e-11 Score=112.89 Aligned_cols=53 Identities=19% Similarity=0.318 Sum_probs=43.0
Q ss_pred CCCceeeEEEeCCC--CceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHH
Q psy1128 192 VPQGWQPLFTNAND--GTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAV 245 (337)
Q Consensus 192 L~~~l~vt~~n~nD--gtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~ 245 (337)
+|+++++++.+.++ +.+|++++++.|+||||||||+..++.+. .||++|++..
T Consensus 151 lp~~~~vlA~s~~~~~~v~~a~~~~~~~~~GvQfHPE~~~T~~G~-~il~nfl~~~ 205 (208)
T PRK05637 151 APDGMESLGTCSSEIGPVIMAAETTDGKAIGLQFHPESVLSPTGP-IILSRCVEQL 205 (208)
T ss_pred CCCCeEEEEEecCCCCCEEEEEEECCCCEEEEEeCCccCcCCCHH-HHHHHHHHHH
Confidence 35667778876532 36899999999999999999999987654 6999999864
No 30
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.28 E-value=1.3e-11 Score=127.29 Aligned_cols=91 Identities=24% Similarity=0.480 Sum_probs=79.5
Q ss_pred eeEEEEecCCcch--HHHHHHHCCCEEEEecCCCCC--------------------------------------------
Q psy1128 157 VHLCVVDCGLKYN--QLRCLIQRGAKLSVIPWNHPI-------------------------------------------- 190 (337)
Q Consensus 157 ~~I~viDfGiK~~--ilr~L~~~G~~v~vvP~~~~~-------------------------------------------- 190 (337)
.+|+++|||.+++ |.|.|++.|+.+.++|++.+.
T Consensus 4 ~~i~vlD~Gsq~~~li~r~lrelg~~~~v~p~~~~~~~l~~~~~dgIIlsGGp~sv~~~~~p~~~~~i~~~~~PvLGIC~ 83 (511)
T PRK00074 4 DKILILDFGSQYTQLIARRVRELGVYSEIVPYDISAEEIRAFNPKGIILSGGPASVYEEGAPRADPEIFELGVPVLGICY 83 (511)
T ss_pred CEEEEEECCCCcHHHHHHHHHHCCCeEEEEECCCCHHHHhccCCCEEEECCCCcccccCCCccccHHHHhCCCCEEEECH
Confidence 3799999999996 889999999999999998754
Q ss_pred -----------------------------------------------------CCCCceeeEEEeCCCCceEEEeecCCc
Q psy1128 191 -----------------------------------------------------KVPQGWQPLFTNANDGTNEGIVHESLP 217 (337)
Q Consensus 191 -----------------------------------------------------sL~~~l~vt~~n~nDgtvEGi~h~~~p 217 (337)
.||+++++++.+ +|+.+++++|.+.|
T Consensus 84 G~QlLa~~lGG~V~~~~~~e~G~~~i~i~~~~~Lf~~l~~~~~v~~~H~d~V~~lp~g~~vlA~s-~~~~v~ai~~~~~~ 162 (511)
T PRK00074 84 GMQLMAHQLGGKVERAGKREYGRAELEVDNDSPLFKGLPEEQDVWMSHGDKVTELPEGFKVIAST-ENCPIAAIANEERK 162 (511)
T ss_pred HHHHHHHHhCCeEEecCCcccceEEEEEcCCChhhhcCCCceEEEEECCeEEEecCCCcEEEEEe-CCCCEEEEEeCCCC
Confidence 578899999998 47999999999999
Q ss_pred EEEEccCCCCCCCCcCHHHHHHHHHHHHHhcc
Q psy1128 218 FFSVQFHPEHTAGPADLELLFDIFINAVRDSK 249 (337)
Q Consensus 218 i~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~~k 249 (337)
+||||||||..+++. +..||++|+..+.+.+
T Consensus 163 i~GvQFHPE~~~t~~-G~~il~nFl~~i~~~~ 193 (511)
T PRK00074 163 FYGVQFHPEVTHTPQ-GKKLLENFVFDICGCK 193 (511)
T ss_pred EEEEeCCCCcCCchh-HHHHHHHHHHHhcCCC
Confidence 999999999998754 5689999997666444
No 31
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.27 E-value=2e-11 Score=108.31 Aligned_cols=50 Identities=26% Similarity=0.491 Sum_probs=44.1
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHH
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFI 242 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi 242 (337)
.||+++++.+.+. |+.+|++++++.|+||+|||||....+ ++..||++|+
T Consensus 132 ~l~~~~~~la~~~-~~~i~a~~~~~~~~~g~QfHPE~~~~~-~g~~ll~~f~ 181 (181)
T cd01742 132 KLPEGFKVIASSD-NCPVAAIANEEKKIYGVQFHPEVTHTE-KGKEILKNFL 181 (181)
T ss_pred hcCCCcEEEEeCC-CCCEEEEEeCCCcEEEEEcCCccccCc-ChHHHHHhhC
Confidence 4788899999885 899999999999999999999999765 6678999984
No 32
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.20 E-value=7.9e-11 Score=105.25 Aligned_cols=45 Identities=29% Similarity=0.461 Sum_probs=39.6
Q ss_pred eeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHH
Q psy1128 196 WQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFI 242 (337)
Q Consensus 196 l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi 242 (337)
+++.+.+ +|+.|+|++++++|+||||||||+..++. +..||++|+
T Consensus 140 ~~~la~~-~~~~v~a~~~~~~~i~gvQfHPE~~~~~~-g~~l~~~f~ 184 (184)
T cd01743 140 LEVTAST-EDGVIMALRHRDLPIYGVQFHPESILTEY-GLRLLENFL 184 (184)
T ss_pred EEEEEeC-CCCeEEEEEeCCCCEEEEeeCCCcCCCcc-hHHHHHhhC
Confidence 7888876 57899999999999999999999988865 667999994
No 33
>PRK13566 anthranilate synthase; Provisional
Probab=99.19 E-value=1.1e-10 Score=124.71 Aligned_cols=93 Identities=19% Similarity=0.257 Sum_probs=79.2
Q ss_pred CCCCeeEEEEecC--CcchHHHHHHHCCCEEEEecCCCCC----------------------------------------
Q psy1128 153 PTGSVHLCVVDCG--LKYNQLRCLIQRGAKLSVIPWNHPI---------------------------------------- 190 (337)
Q Consensus 153 ~~~~~~I~viDfG--iK~~ilr~L~~~G~~v~vvP~~~~~---------------------------------------- 190 (337)
++.+.+|++|||| -.+++.+.|.++|++|++++++.+.
T Consensus 523 ~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsgGpgsp~d~~~~~lI~~a~~~~iPIL 602 (720)
T PRK13566 523 VGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPGPGRPSDFDCKATIDAALARNLPIF 602 (720)
T ss_pred CCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECCCCCChhhCCcHHHHHHHHHCCCcEE
Confidence 3445799999999 4558999999999999999998642
Q ss_pred ------------------------------------------------------------CCCCceeeEEEeCCCCceEE
Q psy1128 191 ------------------------------------------------------------KVPQGWQPLFTNANDGTNEG 210 (337)
Q Consensus 191 ------------------------------------------------------------sL~~~l~vt~~n~nDgtvEG 210 (337)
+||+++++++.+ +|+.||+
T Consensus 603 GIClG~QlLa~alGG~V~~~~~~~~G~~~~V~v~~~~~Lf~~lp~~~~v~~~Hs~~v~~~~Lp~~~~vlA~s-~dg~V~a 681 (720)
T PRK13566 603 GVCLGLQAIVEAFGGELGQLAYPMHGKPSRIRVRGPGRLFSGLPEEFTVGRYHSLFADPETLPDELLVTAET-EDGVIMA 681 (720)
T ss_pred EEehhHHHHHHHcCCEEEECCCCccCCceEEEECCCCchhhcCCCCCEEEEecceeEeeccCCCceEEEEEe-CCCcEEE
Confidence 378899999998 6899999
Q ss_pred EeecCCcEEEEccCCCCCCC--CcCHHHHHHHHHHHHH
Q psy1128 211 IVHESLPFFSVQFHPEHTAG--PADLELLFDIFINAVR 246 (337)
Q Consensus 211 i~h~~~pi~gVQfHPEa~pg--p~d~~~lF~~Fi~~~~ 246 (337)
|+|++.|++|||||||+..+ ...+..||++|++.+.
T Consensus 682 i~~~~~pi~GVQFHPE~i~t~~~~~G~~ii~nfl~~~~ 719 (720)
T PRK13566 682 IEHKTLPVAAVQFHPESIMTLGGDVGLRIIENVVRLLA 719 (720)
T ss_pred EEECCCCEEEEeccCeeCCcCCchhHHHHHHHHHHHhh
Confidence 99999999999999999864 2446789999998863
No 34
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.14 E-value=2.1e-10 Score=122.99 Aligned_cols=54 Identities=19% Similarity=0.179 Sum_probs=46.0
Q ss_pred eeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHhcc
Q psy1128 196 WQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSK 249 (337)
Q Consensus 196 l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~~k 249 (337)
+.+++.+.+++.+||++|+++|+||||||||+.+++.+...||++|++++..++
T Consensus 155 ~~~~a~~~~~~~i~ai~h~~~pi~GVQFHPE~~~s~~g~~~Lf~nFl~~~~~~~ 208 (742)
T TIGR01823 155 PLCLTEDEEGIILMSAQTKKKPWFGVQYHPESCCSELGSGKLVSNFLKLAFINN 208 (742)
T ss_pred EEEEEEcCCCCeEEEEEEcCCceEEEEeCcccCCCCccHHHHHHHHHHHHHHhh
Confidence 345555655678999999999999999999999998887889999999988654
No 35
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.14 E-value=3.9e-10 Score=104.06 Aligned_cols=56 Identities=20% Similarity=0.328 Sum_probs=47.1
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHhc
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDS 248 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~~ 248 (337)
+||+++++++.+ .|+.+||++++++|++|||||||+..+. ++..++.+|+..|...
T Consensus 140 ~lp~~~~vla~s-~~~~vqa~~~~~~~i~gvQfHPE~~~t~-~g~~~l~~f~~~~~~~ 195 (214)
T PRK07765 140 TLPAELEVTART-DSGVIMAVRHRELPIHGVQFHPESVLTE-GGHRMLANWLTVCGWA 195 (214)
T ss_pred cCCCceEEEEEc-CCCcEEEEEeCCCCEEEEeeCCCcccCc-chHHHHHHHHHHhccc
Confidence 478899999988 5899999999999999999999998654 4456999999886433
No 36
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.14 E-value=3.2e-10 Score=121.02 Aligned_cols=56 Identities=23% Similarity=0.332 Sum_probs=48.2
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcC--HHHHHHHHHHHHHh
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPAD--LELLFDIFINAVRD 247 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d--~~~lF~~Fi~~~~~ 247 (337)
+||+++++++.+ +|+.+|||+|++.|++|||||||+..++.. +..||++|+..+..
T Consensus 653 ~LP~~~~vlA~s-~d~~v~Ai~~~~~~i~GVQFHPEsi~T~sg~~G~~ilkNfl~~~~~ 710 (717)
T TIGR01815 653 RLPAELTVTAES-ADGLIMAIEHRRLPLAAVQFHPESIMTLDGGAGLAMIGNVVDRLAA 710 (717)
T ss_pred cCCCCeEEEEEe-CCCcEEEEEECCCCEEEEEeCCeeCCccCchhHHHHHHHHHHHHhh
Confidence 467789999988 689999999999999999999999866543 56899999999863
No 37
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.12 E-value=5.1e-10 Score=100.96 Aligned_cols=52 Identities=19% Similarity=0.367 Sum_probs=44.7
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHH
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINA 244 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~ 244 (337)
++|+++.+++.+ .|+.+++++|+++|+||+|||||+..++.+. .++++|++.
T Consensus 137 ~lp~~l~~~a~~-~~~~i~a~~~~~~pi~GvQFHPE~~~~~~g~-~il~nf~~~ 188 (190)
T PRK06895 137 NFPTPLEITAVC-DENVVMAMQHKTLPIYGVQFHPESYISEFGE-QILRNWLAI 188 (190)
T ss_pred ccCCCeEEEEEC-CCCcEEEEEECCCCEEEEEeCCCcCCCcchH-HHHHHHHhh
Confidence 367788899876 5799999999999999999999998887654 699999874
No 38
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.03 E-value=7.9e-10 Score=98.71 Aligned_cols=51 Identities=29% Similarity=0.610 Sum_probs=43.9
Q ss_pred CCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHH
Q psy1128 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFIN 243 (337)
Q Consensus 192 L~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~ 243 (337)
+|+++++++.+.+++.++++++.+.|++|+|||||..+++.+. .++.+|+.
T Consensus 140 ~p~~~~~la~s~~~~~~~~~~~~~~~i~g~QfHPE~~~~~~~~-~~l~nf~~ 190 (192)
T PF00117_consen 140 LPEGFEVLASSSDGCPIQAIRHKDNPIYGVQFHPEFSSSPGGP-QLLKNFFL 190 (192)
T ss_dssp HHTTEEEEEEETTTTEEEEEEECTTSEEEESSBTTSTTSTTHH-HHHHHHHH
T ss_pred cccccccccccccccccccccccccEEEEEecCCcCCCCCCcc-hhhhheeE
Confidence 7889999999976559999999999999999999999887655 57777764
No 39
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.00 E-value=1.8e-09 Score=117.44 Aligned_cols=43 Identities=30% Similarity=0.465 Sum_probs=38.3
Q ss_pred CceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHhcc
Q psy1128 206 GTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSK 249 (337)
Q Consensus 206 gtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~~k 249 (337)
+.||||+|+++|+||||||||+..++++ ..||++|+++++.+.
T Consensus 297 ~viMairH~~~P~~GVQfHPESi~t~~G-~~l~~nF~~~~~~~~ 339 (918)
T PLN02889 297 KILMGIMHSTRPHYGLQFHPESIATCYG-RQIFKNFREITQDYW 339 (918)
T ss_pred CeeEEEEECCCceEEEEeCCccccCchh-HHHHHHHHHHHHHHh
Confidence 6899999999999999999999988654 679999999998653
No 40
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.00 E-value=6.4e-10 Score=105.19 Aligned_cols=81 Identities=23% Similarity=0.304 Sum_probs=61.5
Q ss_pred hHHHHHHHCCCEEEEecCCCCC--CCCCceeeEEEeCCCCceEEEeecCCcE-EEEccCCCCCCCCcC-HHHHHHHHHHH
Q psy1128 169 NQLRCLIQRGAKLSVIPWNHPI--KVPQGWQPLFTNANDGTNEGIVHESLPF-FSVQFHPEHTAGPAD-LELLFDIFINA 244 (337)
Q Consensus 169 ~ilr~L~~~G~~v~vvP~~~~~--sL~~~l~vt~~n~nDgtvEGi~h~~~pi-~gVQfHPEa~pgp~d-~~~lF~~Fi~~ 244 (337)
+.+..+....-.+.|..+|+.. .||+++++++++ .||.||||++++.|+ +|||||||....+.. ...||++|++.
T Consensus 165 s~l~~i~~~~~~~~Vns~H~q~V~~l~~gl~v~A~s-~dg~ieAie~~~~~~~~GVQwHPE~~~~~~~~~~~lf~~fv~~ 243 (254)
T PRK11366 165 GLLSALLPECSNFWVNSLHGQGAKVVSPRLRVEARS-PDGLVEAVSVINHPFALGVQWHPEWNSSEYALSRILFEGFITA 243 (254)
T ss_pred CcHHHhcCCCceEEeehHHHHHHhhcccceEEEEEc-CCCcEEEEEeCCCCCEEEEEeCCCcCCCCCchHHHHHHHHHHH
Confidence 4455543111245677777665 899999999997 599999999999985 999999999865443 35799999999
Q ss_pred HHhccC
Q psy1128 245 VRDSKT 250 (337)
Q Consensus 245 ~~~~k~ 250 (337)
++++..
T Consensus 244 ~~~~~~ 249 (254)
T PRK11366 244 CQHHIA 249 (254)
T ss_pred HHHHHH
Confidence 876553
No 41
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=98.98 E-value=1e-09 Score=102.82 Aligned_cols=74 Identities=24% Similarity=0.266 Sum_probs=58.7
Q ss_pred cchHHHHHHHCCCEEEEecCCCCC--------C-CCCceeeEEEeCCCCceEEEeecCCcEE-EEccCCCCCCCCcCHHH
Q psy1128 167 KYNQLRCLIQRGAKLSVIPWNHPI--------K-VPQGWQPLFTNANDGTNEGIVHESLPFF-SVQFHPEHTAGPADLEL 236 (337)
Q Consensus 167 K~~ilr~L~~~G~~v~vvP~~~~~--------s-L~~~l~vt~~n~nDgtvEGi~h~~~pi~-gVQfHPEa~pgp~d~~~ 236 (337)
+.|.|..+. |.+..++-+++.. . +..+|.+++++.+||+||++++++.|++ |||||||..++|.+...
T Consensus 152 ~~s~l~~~~--g~~~~~~n~~H~~~v~~~~~~~~~~~~l~v~a~~~ddg~ieaie~~~~pf~lgvQ~HPE~~~~~~~~~~ 229 (235)
T cd01746 152 PGTLAHKYY--GKDEVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGLVEIVELPDHPFFVGTQFHPEFKSRPLKPHP 229 (235)
T ss_pred CCChHHHHh--CCCEEEEecCcccccCHHHHHHHhhCCeEEEEEeCCCCeEEEEEcCCCCcEEEEECCCCCcCCCCCccH
Confidence 557777766 5554444443332 2 3678999999988999999999999987 99999999988888888
Q ss_pred HHHHHH
Q psy1128 237 LFDIFI 242 (337)
Q Consensus 237 lF~~Fi 242 (337)
||+.|+
T Consensus 230 lF~~fv 235 (235)
T cd01746 230 LFVGFV 235 (235)
T ss_pred HHHHhC
Confidence 999995
No 42
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=98.91 E-value=1.8e-09 Score=97.55 Aligned_cols=81 Identities=26% Similarity=0.350 Sum_probs=60.0
Q ss_pred eeEEEEecCCcchHHHHHHHCCCEEE----EecCCCCC--CCCCceeeEEEeCCCCceEEEeecC-CcEEEEccCCCCCC
Q psy1128 157 VHLCVVDCGLKYNQLRCLIQRGAKLS----VIPWNHPI--KVPQGWQPLFTNANDGTNEGIVHES-LPFFSVQFHPEHTA 229 (337)
Q Consensus 157 ~~I~viDfGiK~~ilr~L~~~G~~v~----vvP~~~~~--sL~~~l~vt~~n~nDgtvEGi~h~~-~pi~gVQfHPEa~p 229 (337)
+.|+.+=+|.+- | -...|.+|. |..++... .+|+++++++.+ +|+.||++++++ .+++|||||||..+
T Consensus 101 ~PilgiC~G~Q~--l--~~~~Gg~v~~~~~v~~~H~~~v~~~~~~~~vla~~-~d~~vea~~~~~~~~~~gvQfHPE~~~ 175 (189)
T cd01745 101 KPILGICRGMQL--L--NVALGGTLYQDIRVNSLHHQAIKRLADGLRVEARA-PDGVIEAIESPDRPFVLGVQWHPEWLA 175 (189)
T ss_pred CCEEEEcchHHH--H--HHHhCCeEEcCCceechHHHHHhhcCCCCEEEEEC-CCCcEEEEEeCCCCeEEEEecCCCcCc
Confidence 356655444432 2 223477664 33343332 689999999986 689999999998 89999999999998
Q ss_pred C-CcCHHHHHHHHH
Q psy1128 230 G-PADLELLFDIFI 242 (337)
Q Consensus 230 g-p~d~~~lF~~Fi 242 (337)
+ |.+...||++|+
T Consensus 176 ~~~~~~~~if~~f~ 189 (189)
T cd01745 176 DTDPDSLKLFEAFV 189 (189)
T ss_pred ccCchHhHHHHHhC
Confidence 7 888889999994
No 43
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=98.91 E-value=1.6e-09 Score=101.31 Aligned_cols=79 Identities=24% Similarity=0.339 Sum_probs=60.3
Q ss_pred chHHHHHHHCCCEEEEecCCCCC--CCCCceeeEEEeCCCCceEEEeecC-CcEEEEccCCCCCCCCc-CHHHHHHHHHH
Q psy1128 168 YNQLRCLIQRGAKLSVIPWNHPI--KVPQGWQPLFTNANDGTNEGIVHES-LPFFSVQFHPEHTAGPA-DLELLFDIFIN 243 (337)
Q Consensus 168 ~~ilr~L~~~G~~v~vvP~~~~~--sL~~~l~vt~~n~nDgtvEGi~h~~-~pi~gVQfHPEa~pgp~-d~~~lF~~Fi~ 243 (337)
.+.|..+... +.+.|...|.++ .|.++|.|+++.. ||+||||++++ ..++|||||||...... .+..||+.|++
T Consensus 159 ~s~La~i~g~-~~~~VNS~HhQaIk~La~~L~V~A~a~-DG~VEAie~~~~~fvlGVQWHPE~~~~~~~~~~~LFe~F~~ 236 (243)
T COG2071 159 GSKLAKILGE-SEFMVNSFHHQAIKKLAPGLVVEARAP-DGTVEAVEVKNDAFVLGVQWHPEYLVDTNPLSLALFEAFVN 236 (243)
T ss_pred CccHHHhcCc-cceeecchHHHHHHHhCCCcEEEEECC-CCcEEEEEecCCceEEEEecChhhhccCChHHHHHHHHHHH
Confidence 3456555521 324555556566 8999999999985 99999999996 66789999999987544 45679999999
Q ss_pred HHHhc
Q psy1128 244 AVRDS 248 (337)
Q Consensus 244 ~~~~~ 248 (337)
.++.+
T Consensus 237 ~~~~~ 241 (243)
T COG2071 237 ACKKH 241 (243)
T ss_pred HHHhh
Confidence 98765
No 44
>KOG0026|consensus
Probab=98.90 E-value=3.5e-09 Score=94.24 Aligned_cols=55 Identities=24% Similarity=0.303 Sum_probs=47.8
Q ss_pred CCC-CceeeEEEeCCCCceEEEeecCCc-EEEEccCCCCCCCCcCHHHHHHHHHHHHHh
Q psy1128 191 KVP-QGWQPLFTNANDGTNEGIVHESLP-FFSVQFHPEHTAGPADLELLFDIFINAVRD 247 (337)
Q Consensus 191 sL~-~~l~vt~~n~nDgtvEGi~h~~~p-i~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~ 247 (337)
||| +.|+||++.. ||.|||.||+.+. +-|||||||+..+. .+..+.++|++...+
T Consensus 160 SlP~d~L~VTawTE-nG~iMgaRHkKY~~ieGVQfHPESIlte-eGk~~irNflni~~~ 216 (223)
T KOG0026|consen 160 SFPSDELEVTAWTE-DGLVMAARHRKYKHIQGVQFHPESIITT-EGKTIVRNFIKIVEK 216 (223)
T ss_pred cCCccceeeeEecc-CcEEEeeeccccccccceeecchhhhhh-hhHHHHHHHHHhccc
Confidence 888 6899999985 7999999999988 88999999999774 445799999998764
No 45
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=98.82 E-value=5e-09 Score=107.95 Aligned_cols=51 Identities=33% Similarity=0.411 Sum_probs=47.2
Q ss_pred CCceeeEEEeCCCCceEEEeecCCcEE-EEccCCCCCCCCcCHHHHHHHHHH
Q psy1128 193 PQGWQPLFTNANDGTNEGIVHESLPFF-SVQFHPEHTAGPADLELLFDIFIN 243 (337)
Q Consensus 193 ~~~l~vt~~n~nDgtvEGi~h~~~pi~-gVQfHPEa~pgp~d~~~lF~~Fi~ 243 (337)
.++|++++++.+||+||||+++++|+| |||||||..++|.+.+.||+.|++
T Consensus 473 ~~GL~vsa~s~Dgg~VEaIE~~~hpfflGVQwHPE~~s~p~~~~~LF~~FV~ 524 (525)
T TIGR00337 473 NKGLIVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPNRPHPLFLGFVK 524 (525)
T ss_pred hCCeEEEEEECCCCEEEEEEECCCCeEEEEecCCCCCCCCCchhHHHHHHHh
Confidence 368999999987789999999999987 999999999999999999999986
No 46
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.78 E-value=2.8e-08 Score=90.53 Aligned_cols=53 Identities=19% Similarity=0.109 Sum_probs=40.2
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHH
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVR 246 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~ 246 (337)
.+|+++.+++.+.++..+++++. ..++||||||||... .+...||++|+++++
T Consensus 151 ~~~~~~~v~a~~~~~~~~~a~~~-~~~i~GvQfHPE~~~--~~g~~l~~~fl~~~~ 203 (205)
T PRK13141 151 DPCDEEYVAATTDYGVEFPAAVG-KDNVFGAQFHPEKSG--DVGLKILKNFVEMVE 203 (205)
T ss_pred ccCCcCeEEEEEeCCcEEEEEEe-cCCEEEEeCCCccch--HHHHHHHHHHHHHhh
Confidence 44556777777653347888865 569999999999873 367789999998864
No 47
>PRK05380 pyrG CTP synthetase; Validated
Probab=98.76 E-value=1.2e-08 Score=105.34 Aligned_cols=84 Identities=21% Similarity=0.200 Sum_probs=63.2
Q ss_pred cchHHHHHHHCC-------CEEEEecCCCCCCCCCceeeEEEeCCCCceEEEeecCCcEE-EEccCCCCCCCCcCHHHHH
Q psy1128 167 KYNQLRCLIQRG-------AKLSVIPWNHPIKVPQGWQPLFTNANDGTNEGIVHESLPFF-SVQFHPEHTAGPADLELLF 238 (337)
Q Consensus 167 K~~ilr~L~~~G-------~~v~vvP~~~~~sL~~~l~vt~~n~nDgtvEGi~h~~~pi~-gVQfHPEa~pgp~d~~~lF 238 (337)
+.|.++.+.... ++..|.|.+.++--..+|.+++++.+++.||+++++++|+| |||||||....|.+...||
T Consensus 440 ~gS~l~~iyg~~~i~ErhrHryeVNs~h~qal~~~GL~vsa~s~DgglVEaIEl~~hpfflGVQwHPE~~s~p~~~~pLF 519 (533)
T PRK05380 440 PGTLAAEIYGKEEIYERHRHRYEVNNKYREQLEKAGLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPRRPHPLF 519 (533)
T ss_pred CCChHHHHhCCCceeeecccceecCHHHHHHHhhcCeEEEEEcCCCCcEEEEEeCCCCEEEEEeCCCCCCCCCCchHHHH
Confidence 446777766321 23345554443311238999999986679999999999976 9999999998888888999
Q ss_pred HHHHHHHHhccC
Q psy1128 239 DIFINAVRDSKT 250 (337)
Q Consensus 239 ~~Fi~~~~~~k~ 250 (337)
+.|++.+.+++.
T Consensus 520 ~~FV~Aa~~~~~ 531 (533)
T PRK05380 520 AGFVKAALENKK 531 (533)
T ss_pred HHHHHHHHHHhh
Confidence 999999987654
No 48
>PRK06186 hypothetical protein; Validated
Probab=98.71 E-value=1.8e-08 Score=94.32 Aligned_cols=77 Identities=19% Similarity=0.151 Sum_probs=57.2
Q ss_pred chHHHHHHHCCCEEE---------EecCCCCCCCCCceeeEEEeCCCCceEEEeecCCcE-EEEccCCCCCCCCcCHHHH
Q psy1128 168 YNQLRCLIQRGAKLS---------VIPWNHPIKVPQGWQPLFTNANDGTNEGIVHESLPF-FSVQFHPEHTAGPADLELL 237 (337)
Q Consensus 168 ~~ilr~L~~~G~~v~---------vvP~~~~~sL~~~l~vt~~n~nDgtvEGi~h~~~pi-~gVQfHPEa~pgp~d~~~l 237 (337)
.+.++.+. |.+.. |.|.+.+.-...||.+++++. ||.||+++.++.|+ +|||||||...-|.....|
T Consensus 142 ~S~l~~iy--g~~~i~erhrHryeVNs~h~q~i~~~GL~vsa~s~-DG~iEaiE~~~hpf~lGVQwHPE~~s~~~~~~~L 218 (229)
T PRK06186 142 GSLIARAY--GTLEIEEGYHCRYGVNPEFVAALESGDLRVTGWDE-DGDVRAVELPGHPFFVATLFQPERAALAGRPPPL 218 (229)
T ss_pred CCHHHHHh--CCCeeeeeccccEEECHHHHHHHhcCCeEEEEEcC-CCCEEEEEeCCCCcEEEEeCCCCccCCCCCCCHH
Confidence 46777776 54443 333333332367999999985 89999999999886 5999999987666666679
Q ss_pred HHHHHHHHHh
Q psy1128 238 FDIFINAVRD 247 (337)
Q Consensus 238 F~~Fi~~~~~ 247 (337)
|+.|++.+.+
T Consensus 219 F~~Fv~aa~~ 228 (229)
T PRK06186 219 VRAFLRAARA 228 (229)
T ss_pred HHHHHHHHhc
Confidence 9999998753
No 49
>KOG1622|consensus
Probab=98.70 E-value=3.6e-08 Score=98.99 Aligned_cols=90 Identities=27% Similarity=0.465 Sum_probs=77.4
Q ss_pred eEEEEecCCcch--HHHHHHHCCCEEEEecCCCCC---------------------------------------------
Q psy1128 158 HLCVVDCGLKYN--QLRCLIQRGAKLSVIPWNHPI--------------------------------------------- 190 (337)
Q Consensus 158 ~I~viDfGiK~~--ilr~L~~~G~~v~vvP~~~~~--------------------------------------------- 190 (337)
+|+++|||.+++ |-|.+++......++|.++++
T Consensus 18 ~i~iLD~GaQY~~~I~RrvRel~v~se~~p~~t~~~~i~~~~~rgiIiSGGP~SVya~dAP~~dp~if~~~vpvLGICYG 97 (552)
T KOG1622|consen 18 TILILDFGAQYGKVIDRRVRELNVQSEILPLTTPAKTITEYGPRGIIISGGPNSVYAEDAPSFDPAIFELGVPVLGICYG 97 (552)
T ss_pred eEEEEeccchhhHHHHHHHHHHhhhhhhccCCChhhhhhcCCceEEEEeCCCCccccCcCCCCChhHhccCCcceeehhH
Confidence 799999999995 778999988999999999988
Q ss_pred ------------------------------------------------------CCCCceeeEEEeCCCCceEEEeecCC
Q psy1128 191 ------------------------------------------------------KVPQGWQPLFTNANDGTNEGIVHESL 216 (337)
Q Consensus 191 ------------------------------------------------------sL~~~l~vt~~n~nDgtvEGi~h~~~ 216 (337)
.+|++|++.+.+.| ..+.|+.+..+
T Consensus 98 mQ~i~~~~Gg~V~~~~~RE~G~~eI~v~~~~~lF~~~~~~~~~~VlltHgdsl~~v~~g~kv~a~s~n-~~va~i~~e~k 176 (552)
T KOG1622|consen 98 MQLINKLNGGTVVKGMVREDGEDEIEVDDSVDLFSGLHKTEFMTVLLTHGDSLSKVPEGFKVVAFSGN-KPVAGILNELK 176 (552)
T ss_pred HHHHHHHhCCccccccccCCCCceEEcCchhhhhhhhcccceeeeeeccccchhhccccceeEEeecC-cceeeehhhhh
Confidence 46889999999853 45999999999
Q ss_pred cEEEEccCCCCCCCCcCHHHHHHHHHHHHHhcc
Q psy1128 217 PFFSVQFHPEHTAGPADLELLFDIFINAVRDSK 249 (337)
Q Consensus 217 pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~~k 249 (337)
+++|+|||||...+|... .++++|+-.+...+
T Consensus 177 kiyglqfhpEV~~t~~g~-~ll~nFl~~vc~~~ 208 (552)
T KOG1622|consen 177 KIYGLQFHPEVTLTPNGK-ELLKNFLFDVCGCS 208 (552)
T ss_pred hhhcCCCCCcccccCchh-HHHHHHHHHHcCCc
Confidence 999999999999888776 59999995555443
No 50
>PLN02327 CTP synthase
Probab=98.59 E-value=7.2e-08 Score=99.86 Aligned_cols=59 Identities=29% Similarity=0.372 Sum_probs=52.0
Q ss_pred CC-CCceeeEEEeCCCCceEEEeecCCcEE-EEccCCCCCCCCcCHHHHHHHHHHHHHhcc
Q psy1128 191 KV-PQGWQPLFTNANDGTNEGIVHESLPFF-SVQFHPEHTAGPADLELLFDIFINAVRDSK 249 (337)
Q Consensus 191 sL-~~~l~vt~~n~nDgtvEGi~h~~~pi~-gVQfHPEa~pgp~d~~~lF~~Fi~~~~~~k 249 (337)
.| ..+|.+++++.+++++|+++++++|+| |||||||..+.|.+...||..|++.+.+++
T Consensus 490 ~le~~gL~vsa~s~dg~~IEaiE~~~~pffvGVQfHPE~~s~p~~~~pLF~~Fv~Aa~~~~ 550 (557)
T PLN02327 490 RLEKAGLSFVGKDETGRRMEIVELPSHPFFVGVQFHPEFKSRPGKPSPLFLGLIAAASGQL 550 (557)
T ss_pred HHhhcCcEEEEEcCCCCEEEEEEeCCCCEEEEEEcCCCCCCCCCCchHHHHHHHHHHHHhH
Confidence 45 468999999987779999999999987 999999999998888899999999987644
No 51
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=98.55 E-value=1.9e-07 Score=85.57 Aligned_cols=51 Identities=27% Similarity=0.380 Sum_probs=43.3
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHH
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAV 245 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~ 245 (337)
.||+++++.|.+. ..-++++++. ++++|||||||..+ .....++++|...+
T Consensus 143 ~lP~g~~vlA~s~-~cp~qa~~~~-~~~~gvQFHpEv~~--~~~~~~l~nf~~~i 193 (198)
T COG0518 143 ELPEGAVVLASSE-TCPNQAFRYG-KRAYGVQFHPEVTH--EYGEALLENFAHEI 193 (198)
T ss_pred cCCCCCEEEecCC-CChhhheecC-CcEEEEeeeeEEeH--HHHHHHHHHhhhhh
Confidence 4899999999874 5779999999 99999999999987 55667999998643
No 52
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.55 E-value=4.6e-07 Score=82.54 Aligned_cols=52 Identities=21% Similarity=0.287 Sum_probs=37.2
Q ss_pred CCCCceeeEEEeCCCCce-EEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHH
Q psy1128 191 KVPQGWQPLFTNANDGTN-EGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVR 246 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtv-EGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~ 246 (337)
.+++++.+++.+. |++. ++++. ..|+||+|||||.. + .....||++|+++++
T Consensus 147 ~~~~~~~~la~~~-~~~~~~~~~~-~~~~~gvQfHPE~~-~-~~g~~i~~~f~~~~~ 199 (200)
T PRK13143 147 YPDDEDYVVATTD-YGIEFPAAVC-NDNVFGTQFHPEKS-G-ETGLKILENFVELIK 199 (200)
T ss_pred CCCCcceEEEEEc-CCCEEEEEEE-cCCEEEEeCCCccc-h-HHHHHHHHHHHHHHh
Confidence 4455677788763 5544 44444 55999999999987 3 355689999998763
No 53
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=98.51 E-value=3.6e-07 Score=82.66 Aligned_cols=49 Identities=27% Similarity=0.241 Sum_probs=35.7
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHH
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFI 242 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi 242 (337)
++++.+.+++.+ +++..+...+.+.++||||||||.. + ..+..++++|+
T Consensus 150 ~~~~~~~~la~s-~~~~~~~~~~~~~~i~GvQFHPE~~-~-~~g~~~~~nf~ 198 (198)
T cd01748 150 PPDDPDYILATT-DYGGKFPAAVEKDNIFGTQFHPEKS-G-KAGLKLLKNFL 198 (198)
T ss_pred ecCCcceEEEEe-cCCCeEEEEEEcCCEEEEECCCccc-c-HhHHHHHHhhC
Confidence 344456677766 3555555567788999999999998 3 46778999984
No 54
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.42 E-value=9.8e-07 Score=80.26 Aligned_cols=50 Identities=28% Similarity=0.382 Sum_probs=35.0
Q ss_pred CCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHH
Q psy1128 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINA 244 (337)
Q Consensus 192 L~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~ 244 (337)
+|.+..+++.+. ++......+...++||+|||||.. + .....|+++|+++
T Consensus 147 lp~~~~~la~s~-~~~~~~~~~~~~~i~G~QFHPE~~-~-~~G~~~l~nfl~~ 196 (196)
T PRK13170 147 MPVNEYTIAQCN-YGEPFSAAIQKDNFFGVQFHPERS-G-AAGAQLLKNFLEM 196 (196)
T ss_pred cCCCCcEEEEec-CCCeEEEEEEcCCEEEEECCCCCc-c-cccHHHHHHHhhC
Confidence 444444555543 356555667778899999999998 4 4556799999863
No 55
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.38 E-value=1.5e-06 Score=79.09 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=24.8
Q ss_pred eEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHH
Q psy1128 208 NEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFIN 243 (337)
Q Consensus 208 vEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~ 243 (337)
+++++ ..+++|||||||.+ ++ ....||++|++
T Consensus 169 ~~a~~--~~~i~GvQFHPE~~-~~-~g~~ll~~Fl~ 200 (201)
T PRK13152 169 VASLQ--KDNIFATQFHPEKS-QN-LGLKLLENFAR 200 (201)
T ss_pred EEEEe--cCCEEEEeCCCeec-Ch-hhHHHHHHHHh
Confidence 44554 56899999999988 43 55679999986
No 56
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=98.35 E-value=3.9e-06 Score=87.47 Aligned_cols=39 Identities=21% Similarity=0.288 Sum_probs=32.1
Q ss_pred CCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHh
Q psy1128 205 DGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRD 247 (337)
Q Consensus 205 DgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~ 247 (337)
|+.++++++. +++|||||||.++ ..+..||++|++.+..
T Consensus 174 ~~~IaAI~~g--nI~GVQFHPE~s~--~~G~~L~~nFl~~~~~ 212 (538)
T PLN02617 174 GEFIASVRKG--NVHAVQFHPEKSG--ATGLSILRRFLEPKSS 212 (538)
T ss_pred CCcEEEEEeC--CEEEEEcCCccCc--hhHHHHHHHHHHhhhh
Confidence 4578899874 8999999999985 4556899999998874
No 57
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=98.34 E-value=1.6e-06 Score=78.71 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=32.6
Q ss_pred eEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHH
Q psy1128 198 PLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFIN 243 (337)
Q Consensus 198 vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~ 243 (337)
+++.+ +++......+...++||+|||||..+ +....|+++|++
T Consensus 153 ~~a~~-~~g~~~~~~~~~~~i~GvQFHPE~~~--~~g~~ll~~f~~ 195 (196)
T TIGR01855 153 VLAYA-DYGEKFPAAVQKGNIFGTQFHPEKSG--KTGLKLLENFLE 195 (196)
T ss_pred EEEEE-cCCcEEEEEEecCCEEEEECCCccCc--HhHHHHHHHHHh
Confidence 34433 35666666777889999999999873 567789999986
No 58
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.31 E-value=3.1e-06 Score=76.85 Aligned_cols=45 Identities=27% Similarity=0.261 Sum_probs=32.1
Q ss_pred eeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHH
Q psy1128 196 WQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFIN 243 (337)
Q Consensus 196 l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~ 243 (337)
+.+.+.+. ++......+...++||||||||.. + .....||++|++
T Consensus 154 ~~~lA~s~-~~~~~~~~~~~~~i~GvQFHPE~~-~-~~g~~ll~nfl~ 198 (199)
T PRK13181 154 EDVLATTE-YGVPFCSAVAKDNIYAVQFHPEKS-G-KAGLKLLKNFAE 198 (199)
T ss_pred ccEEEEEc-CCCEEEEEEECCCEEEEECCCccC-C-HHHHHHHHHHHh
Confidence 45666663 355444445567899999999987 3 456689999986
No 59
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=98.19 E-value=2.9e-06 Score=78.93 Aligned_cols=39 Identities=31% Similarity=0.435 Sum_probs=34.0
Q ss_pred CceEEEeecCCcEEEEccCCCCCC----CCcCHHHHHHHHHHH
Q psy1128 206 GTNEGIVHESLPFFSVQFHPEHTA----GPADLELLFDIFINA 244 (337)
Q Consensus 206 gtvEGi~h~~~pi~gVQfHPEa~p----gp~d~~~lF~~Fi~~ 244 (337)
..|+||.|++.+++|+|||||+.. ++.++..||++|++.
T Consensus 184 ~~i~~i~~~~~~~~g~~~HpE~~~~~~~~~~~g~~~~~~~~~~ 226 (227)
T TIGR01737 184 GNIAGIVNERGNVLGMMPHPERASEKLLGGDDGLKLFESLVEW 226 (227)
T ss_pred HHHcccCCCCCCEEEEecCchhhcccccCCcccHHHHHHHHhh
Confidence 479999999999999999999983 456778899999865
No 60
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=98.17 E-value=6.4e-07 Score=82.84 Aligned_cols=58 Identities=24% Similarity=0.410 Sum_probs=40.2
Q ss_pred cchHHHHHHHCCCEEEEecCCCCC--CCCCceeeEEEeCCCCceEEEeecC--CcEEEEccCCC
Q psy1128 167 KYNQLRCLIQRGAKLSVIPWNHPI--KVPQGWQPLFTNANDGTNEGIVHES--LPFFSVQFHPE 226 (337)
Q Consensus 167 K~~ilr~L~~~G~~v~vvP~~~~~--sL~~~l~vt~~n~nDgtvEGi~h~~--~pi~gVQfHPE 226 (337)
+.+.|+.+... -+..|..+|+.+ .|+++|++++++. ||.||+|++.+ +|++|||||||
T Consensus 156 ~~s~l~~~~~~-~~~~vns~Hhq~v~~l~~~l~v~A~s~-Dg~iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 156 PGSLLAKILGS-EEIEVNSFHHQAVKPLGEGLRVTARSP-DGVIEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp TTSTCCCTSHH-CTEEEEEEECEEECCHHCCEEEEEEEC-TSSEEEEEECCESS-EEEESS-CC
T ss_pred cCchHHHHhCc-CcceeecchhhhhhccCCCceEEEEec-CCcEEEEEEcCCCCCEEEEEeCCC
Confidence 44555544431 223444444444 7788999999997 99999999998 47999999998
No 61
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=98.06 E-value=7.9e-06 Score=78.31 Aligned_cols=39 Identities=28% Similarity=0.388 Sum_probs=31.4
Q ss_pred CCCceeeEEEeCCC-Cc--eEEEeecCCcEEEEccCCCCCCC
Q psy1128 192 VPQGWQPLFTNAND-GT--NEGIVHESLPFFSVQFHPEHTAG 230 (337)
Q Consensus 192 L~~~l~vt~~n~nD-gt--vEGi~h~~~pi~gVQfHPEa~pg 230 (337)
|.+.+.+++.+.++ |. |++++|+++|+||||||||.++.
T Consensus 176 l~~~~~vla~~~d~~g~~fis~ie~~~~pi~gvQFHPEks~f 217 (273)
T cd01747 176 LSDFFNVLTTNDDWNGVEFISTVEAYKYPIYGVQWHPEKNAF 217 (273)
T ss_pred cccceEEEEEEecCCCceEEEEEEecCCceEEEecCCCcccc
Confidence 44567899988653 43 69999999999999999998753
No 62
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.00 E-value=1.1e-05 Score=73.15 Aligned_cols=59 Identities=22% Similarity=0.325 Sum_probs=44.8
Q ss_pred EEEEecCCCCC--CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHH
Q psy1128 180 KLSVIPWNHPI--KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVR 246 (337)
Q Consensus 180 ~v~vvP~~~~~--sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~ 246 (337)
...++=+|.+. .||+++++.+.+ |+.+++++. .++||+|||||.... ..||++|+++++
T Consensus 128 ~~~~~~~H~d~v~~lp~~~~vlA~~--~~~~~~~~~--~~~~g~QfHPE~~~~----~~~~~~f~~~~~ 188 (189)
T PRK13525 128 PFPAVFIRAPYIEEVGPGVEVLATV--GGRIVAVRQ--GNILATSFHPELTDD----TRVHRYFLEMVK 188 (189)
T ss_pred CeEEEEEeCceeeccCCCcEEEEEc--CCEEEEEEe--CCEEEEEeCCccCCC----chHHHHHHHHhh
Confidence 34444444433 689999999986 567777764 489999999998753 479999999976
No 63
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=97.91 E-value=1.2e-05 Score=71.76 Aligned_cols=42 Identities=29% Similarity=0.417 Sum_probs=37.0
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHH
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFI 242 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi 242 (337)
.||+++++.+.+ +|+.+|+++++ .+++|+||||| ..+|++|+
T Consensus 147 ~lp~~~~~la~~-~~~~v~~~~~~-~~~~g~QfHPE--------~~~~~~f~ 188 (188)
T cd01741 147 ELPPGAVLLASS-EACPNQAFRYG-DRALGLQFHPE--------ERLLRNFL 188 (188)
T ss_pred hCCCCCEEeecC-CCCCcceEEec-CCEEEEccCch--------HHHHhhhC
Confidence 589999999987 58999999987 79999999999 56888874
No 64
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.81 E-value=2.9e-05 Score=71.73 Aligned_cols=49 Identities=24% Similarity=0.178 Sum_probs=37.4
Q ss_pred CceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHH
Q psy1128 194 QGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINA 244 (337)
Q Consensus 194 ~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~ 244 (337)
+.+.+++.+.+++.++...+.+.++||+|||||.+. + ....|+++|++.
T Consensus 161 ~~l~~sa~~~~~g~~~~a~~~~~~i~GvQFHPE~s~-~-~G~~iL~nfl~~ 209 (210)
T PRK14004 161 EGNAITGLCDYYQEKFPAVVEKENIFGTQFHPEKSH-T-HGLKLLENFIEF 209 (210)
T ss_pred CcceEEEeeeECCEEEEEEEecCCEEEEeCCcccCc-h-hHHHHHHHHHhh
Confidence 346677776655665555557889999999999986 4 667899999985
No 65
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=97.78 E-value=3.2e-05 Score=79.03 Aligned_cols=95 Identities=27% Similarity=0.337 Sum_probs=73.3
Q ss_pred CCeeEEEEecCCcc-hHHHHHHHCCCEEEEecCCCCC--------CC-CCceeeEEEeCCCCceEEEeecCCcEE-EEcc
Q psy1128 155 GSVHLCVVDCGLKY-NQLRCLIQRGAKLSVIPWNHPI--------KV-PQGWQPLFTNANDGTNEGIVHESLPFF-SVQF 223 (337)
Q Consensus 155 ~~~~I~viDfGiK~-~ilr~L~~~G~~v~vvP~~~~~--------sL-~~~l~vt~~n~nDgtvEGi~h~~~pi~-gVQf 223 (337)
|..|.-...+=+|. ++++.|. |.+.+.--+.+.. .| ..||.+..++.+++.+|.++.+++|+| |+||
T Consensus 427 GTmRLG~y~~~l~~gT~a~~lY--~~~~v~ERHRHRYEvN~~y~~~le~~Gl~~sg~s~d~~lvEivE~~~hpfFv~~Qf 504 (533)
T COG0504 427 GTMRLGAYPCRLKPGTLAAKLY--GKDEIYERHRHRYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHPFFVATQF 504 (533)
T ss_pred ceeeccceeeecCCCcHHHHHh--CCCeeeeeccchhhcCHHHHHHHHhCCeEEEEEcCCCCeEEEEEcCCCceEEEEcc
Confidence 44566666666666 4777766 4344444455444 33 348999999987789999999999986 9999
Q ss_pred CCCCCCCCcCHHHHHHHHHHHHHhccCC
Q psy1128 224 HPEHTAGPADLELLFDIFINAVRDSKTR 251 (337)
Q Consensus 224 HPEa~pgp~d~~~lF~~Fi~~~~~~k~~ 251 (337)
|||-..-|.+.+.+|..|++.+.+++..
T Consensus 505 HPEf~SrP~~phPlf~~fv~Aa~~~~~~ 532 (533)
T COG0504 505 HPEFKSRPLRPHPLFVGFVKAALEYKKD 532 (533)
T ss_pred cccccCCCCCCCccHHHHHHHHHHhhcc
Confidence 9999999999999999999998876643
No 66
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=97.77 E-value=4.6e-05 Score=69.28 Aligned_cols=58 Identities=21% Similarity=0.280 Sum_probs=42.6
Q ss_pred EEEecCCCCC--CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHH
Q psy1128 181 LSVIPWNHPI--KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVR 246 (337)
Q Consensus 181 v~vvP~~~~~--sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~ 246 (337)
..++=+|... .||+++++.+.+. |+ +++++. .+++|+|||||..+. ..||++|++.+.
T Consensus 139 ~~~~~~H~~~v~~lp~~~~~la~~~-~~-~~a~~~--~~~~g~QfHPE~~~~----~~l~~~f~~~~~ 198 (200)
T PRK13527 139 FHAVFIRAPAITKVGGDVEVLAKLD-DR-IVAVEQ--GNVLATAFHPELTDD----TRIHEYFLKKVK 198 (200)
T ss_pred ceEEEEccccccccCCCeEEEEEEC-CE-EEEEEE--CCEEEEEeCCCCCCC----CHHHHHHHHHHh
Confidence 3444344333 6899999999873 55 568863 589999999996642 579999999874
No 67
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=97.72 E-value=4.6e-05 Score=68.92 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=36.6
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHH
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFIN 243 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~ 243 (337)
.||+++++.+.+ |+.+++++.. +++|+|||||... +. .+|+.|++
T Consensus 140 ~lp~~~~vla~~--~~~~~a~~~~--~~~gvQfHPE~~~---~~-~~~~~f~~ 184 (184)
T TIGR03800 140 SVGNGVEILAKV--GNRIVAVRQG--NILVSSFHPELTD---DH-RVHEYFLE 184 (184)
T ss_pred cCCCCeEEEEEe--CCeeEEEEeC--CEEEEEeCCccCC---Cc-hHHHHhhC
Confidence 789999999986 6788999644 7999999999873 33 58998873
No 68
>KOG1224|consensus
Probab=97.67 E-value=2.9e-05 Score=79.85 Aligned_cols=56 Identities=30% Similarity=0.494 Sum_probs=41.9
Q ss_pred CCCCc-eeeEEEeCCCC--ceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHh
Q psy1128 191 KVPQG-WQPLFTNANDG--TNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRD 247 (337)
Q Consensus 191 sL~~~-l~vt~~n~nDg--tvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~ 247 (337)
++|-+ +.+.....+|+ .+|++.|+..|.||+|||||+..... +..||++|+++.-.
T Consensus 161 ~~pid~l~il~t~~ddng~ilMsi~~~~fPhfG~qyHPES~~s~~-g~~lfkNFl~lt~~ 219 (767)
T KOG1224|consen 161 SLPIDLLPILWTIYDDNGHILMSIMHSSFPHFGLQYHPESIASTY-GSQLFKNFLDLTVN 219 (767)
T ss_pred CCchhhhcceeEeecCCceEEEEeeccCCCccceeeChHHhhhhh-hHHHHHHHHHhhcc
Confidence 45543 33444444455 79999999999999999999996544 45699999998753
No 69
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.67 E-value=6.8e-05 Score=68.94 Aligned_cols=47 Identities=21% Similarity=0.202 Sum_probs=35.6
Q ss_pred ceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHH
Q psy1128 195 GWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINA 244 (337)
Q Consensus 195 ~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~ 244 (337)
+..+++.+.....+++++ ...+++|||||||.+ + .....|+++|++.
T Consensus 161 ~~~~la~s~~~~~~~a~~-~~~~i~GvQFHPE~s-~-~~G~~ll~nfl~~ 207 (209)
T PRK13146 161 PADVVAWTDYGGPFTAAV-ARDNLFATQFHPEKS-Q-DAGLALLRNFLAW 207 (209)
T ss_pred CCcEEEEEcCCCEEEEEE-ecCCEEEEEcCCccc-H-HHHHHHHHHHHhh
Confidence 567778774333567775 458999999999987 4 4667899999876
No 70
>PRK09065 glutamine amidotransferase; Provisional
Probab=97.64 E-value=6e-05 Score=70.63 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=43.8
Q ss_pred eEEEEecCCcchHHHHHHHCCCEEEEecCCCCCCCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCC
Q psy1128 158 HLCVVDCGLKYNQLRCLIQRGAKLSVIPWNHPIKVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHT 228 (337)
Q Consensus 158 ~I~viDfGiK~~ilr~L~~~G~~v~vvP~~~~~sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~ 228 (337)
.|.+.+-|.+..+++.+- ....+..+..+.-.+||+++++++.+. ++.++|+++++ ++||||||||..
T Consensus 122 ~v~~~~~~~~~~l~~~~~-~~~~v~~~H~d~v~~lp~~~~~la~s~-~~~iqa~~~~~-~i~gvQfHPE~~ 189 (237)
T PRK09065 122 TVELHPAAADDPLFAGLP-AQFPAHLTHLQSVLRLPPGAVVLARSA-QDPHQAFRYGP-HAWGVQFHPEFT 189 (237)
T ss_pred EEEEccccccChhhhcCC-ccCcEeeehhhhhhhCCCCCEEEEcCC-CCCeeEEEeCC-CEEEEEeCCcCC
Confidence 444444444444443321 123333333332237999999999874 68899999976 699999999975
No 71
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=97.57 E-value=0.0001 Score=68.13 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=30.1
Q ss_pred CCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHH
Q psy1128 204 NDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINA 244 (337)
Q Consensus 204 nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~ 244 (337)
.|+.++++++ .+++|||||||.+ + .....|+++|++.
T Consensus 173 ~~~~v~a~~~--~~i~GvQFHPE~s-~-~~G~~il~nfl~~ 209 (210)
T CHL00188 173 KQQMVAAIEY--DNIFAMQFHPEKS-G-EFGLWLLREFMKK 209 (210)
T ss_pred CcceEEEEec--CCEEEEecCCccc-c-HhHHHHHHHHHhh
Confidence 3567999996 4999999999998 5 4555799999864
No 72
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=97.52 E-value=0.00039 Score=63.97 Aligned_cols=27 Identities=37% Similarity=0.656 Sum_probs=22.1
Q ss_pred cEEEEccCCCCCCCCcCHHHHHHHHHHHH
Q psy1128 217 PFFSVQFHPEHTAGPADLELLFDIFINAV 245 (337)
Q Consensus 217 pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~ 245 (337)
+++|+|||||.+ |..+ ..|+++|++++
T Consensus 177 N~~g~QFHPEKS-g~~G-l~lL~NFl~~~ 203 (204)
T COG0118 177 NVFGTQFHPEKS-GKAG-LKLLKNFLEWI 203 (204)
T ss_pred CEEEEecCcccc-hHHH-HHHHHHHHhhc
Confidence 799999999998 4333 46999999874
No 73
>PRK06490 glutamine amidotransferase; Provisional
Probab=97.49 E-value=0.00032 Score=66.00 Aligned_cols=47 Identities=26% Similarity=0.409 Sum_probs=38.8
Q ss_pred CCCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHH
Q psy1128 190 IKVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINA 244 (337)
Q Consensus 190 ~sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~ 244 (337)
..||+++++.+.+ .++.++++++.+ ++||+|||||.. ..++++++..
T Consensus 146 ~~lP~~~~~LA~s-~~~~~qa~~~~~-~v~g~QfHPE~~------~~~~~~~i~~ 192 (239)
T PRK06490 146 FDLPAGAELLATG-DDFPNQAFRYGD-NAWGLQFHPEVT------RAMMHRWVVR 192 (239)
T ss_pred ccCCCCCEEEEeC-CCCCeEEEEeCC-CEEEEeeCccCC------HHHHHHHHHh
Confidence 5899999999987 589999999965 799999999987 2466666653
No 74
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=97.27 E-value=0.0003 Score=63.25 Aligned_cols=44 Identities=25% Similarity=0.417 Sum_probs=34.9
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHH
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFI 242 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi 242 (337)
.+|+++++.+.+ |+.+++++.. +++|+|||||..+. ..+|+.|+
T Consensus 140 ~~p~~~~~la~~--~~~~~a~~~~--~~~g~qfHPE~~~~----~~~~~~f~ 183 (183)
T cd01749 140 EVGPGVEVLAEY--DGKIVAVRQG--NVLATSFHPELTDD----TRIHEYFL 183 (183)
T ss_pred EcCCCcEEEEec--CCEEEEEEEC--CEEEEEcCCccCCC----cchhhhhC
Confidence 688999999986 6777788754 79999999997742 25788774
No 75
>PRK07567 glutamine amidotransferase; Provisional
Probab=97.22 E-value=0.00038 Score=65.53 Aligned_cols=66 Identities=18% Similarity=0.189 Sum_probs=45.7
Q ss_pred eEEEEecCCcchHHHHHHHCCCEEEEecCCCCC--CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCC
Q psy1128 158 HLCVVDCGLKYNQLRCLIQRGAKLSVIPWNHPI--KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHT 228 (337)
Q Consensus 158 ~I~viDfGiK~~ilr~L~~~G~~v~vvP~~~~~--sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~ 228 (337)
.|-+.+-|-+..++.. .+..+.++-+|... +||+++++.+.+ +++.++|+++.+ +++|||||||..
T Consensus 126 ~v~l~~~g~~~~l~~~---~~~~~~~~~~H~d~V~~lp~~~~vlA~s-~~~~vqa~~~~~-~~~gvQfHPE~~ 193 (242)
T PRK07567 126 TVSLTDAGRADPLLAG---LPDTFTAFVGHKEAVSALPPGAVLLATS-PTCPVQMFRVGE-NVYATQFHPELD 193 (242)
T ss_pred EEEECCccCCChhhcC---CCCceEEEeehhhhhhhCCCCCEEEEeC-CCCCEEEEEeCC-CEEEEEeCCcCC
Confidence 4445555544444322 23345555455444 799999999987 578999999865 699999999976
No 76
>PRK08250 glutamine amidotransferase; Provisional
Probab=96.69 E-value=0.0027 Score=59.47 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=44.0
Q ss_pred eEEEEecCCcchHHHHHHHCCCEEEEecCCC-CCCCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCC
Q psy1128 158 HLCVVDCGLKYNQLRCLIQRGAKLSVIPWNH-PIKVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTA 229 (337)
Q Consensus 158 ~I~viDfGiK~~ilr~L~~~G~~v~vvP~~~-~~sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~p 229 (337)
.|-+-+=|-+..++..+-. ...|+-++. ...||+++++.+.+ .++.+++++..+ +++|+|||||..+
T Consensus 117 ~v~lt~~g~~d~l~~~~~~---~~~v~~~H~d~~~lP~~a~~LA~s-~~~~~qa~~~~~-~~~g~QfHPE~~~ 184 (235)
T PRK08250 117 PITLTEAGLKDPLLSHFGS---TLTVGHWHNDMPGLTDQAKVLATS-EGCPRQIVQYSN-LVYGFQCHMEFTV 184 (235)
T ss_pred EEEEccccccCchhhcCCC---CcEEEEEecceecCCCCCEEEECC-CCCCceEEEeCC-CEEEEeecCcCCH
Confidence 4555554544445443322 233333333 24899999999987 467899998754 6999999999773
No 77
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=96.68 E-value=0.0012 Score=61.16 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=31.5
Q ss_pred ceEEEeecCCcEEEEccCCCCCCCC----cCHHHHHHHHHH
Q psy1128 207 TNEGIVHESLPFFSVQFHPEHTAGP----ADLELLFDIFIN 243 (337)
Q Consensus 207 tvEGi~h~~~pi~gVQfHPEa~pgp----~d~~~lF~~Fi~ 243 (337)
.|+|+..++..++|+|||||+...| .+...||++|++
T Consensus 178 ~ia~i~~~~~~~~g~~~HPE~~~~~~~~~~~g~~lf~~~v~ 218 (219)
T PRK03619 178 DIAGIVNEKGNVLGMMPHPERAVEPLLGSTDGLKLFESLLK 218 (219)
T ss_pred HhcccCCCCCCEEEEeCCCCccccCccCCCcCHHHHHHHhh
Confidence 4788887788999999999998544 788899999985
No 78
>PRK07053 glutamine amidotransferase; Provisional
Probab=96.47 E-value=0.003 Score=59.27 Aligned_cols=66 Identities=24% Similarity=0.406 Sum_probs=44.0
Q ss_pred eEEEEecCCcchHHHHHHHCCCEEEEecCCCC-CCCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCC
Q psy1128 158 HLCVVDCGLKYNQLRCLIQRGAKLSVIPWNHP-IKVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTA 229 (337)
Q Consensus 158 ~I~viDfGiK~~ilr~L~~~G~~v~vvP~~~~-~sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~p 229 (337)
.|.+.+-|.+.-. .. .+....++-+|.. ++||++.++.+.+. +..+++++.. .+++|+|||||..+
T Consensus 116 ~i~~t~~g~~~pl-~~---~~~~~~~~~~H~d~~~lP~ga~~La~s~-~~~~qaf~~g-~~~~g~QfHpE~~~ 182 (234)
T PRK07053 116 PLTLTDAGRASPL-RH---LGAGTPVLHWHGDTFDLPEGATLLASTP-ACRHQAFAWG-NHVLALQFHPEARE 182 (234)
T ss_pred EEEEeccccCChh-hc---CCCcceEEEEeCCEEecCCCCEEEEcCC-CCCeeEEEeC-CCEEEEeeCccCCH
Confidence 4555555544332 12 2233445544433 38999999999874 6789999974 58999999999774
No 79
>PRK05665 amidotransferase; Provisional
Probab=96.40 E-value=0.0057 Score=57.66 Aligned_cols=46 Identities=13% Similarity=0.114 Sum_probs=35.5
Q ss_pred EEecCCCC--CCCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCC
Q psy1128 182 SVIPWNHP--IKVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTA 229 (337)
Q Consensus 182 ~vvP~~~~--~sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~p 229 (337)
.++-+|.+ ..||+++++.+.| +++.+++++.. .++||+|||||..+
T Consensus 143 ~~~~~H~D~V~~LP~ga~~La~s-~~~~~q~~~~~-~~~~g~QfHPE~~~ 190 (240)
T PRK05665 143 TLLISHQDQVTALPEGATVIASS-DFCPFAAYHIG-DQVLCFQGHPEFVH 190 (240)
T ss_pred EEEEEcCCeeeeCCCCcEEEEeC-CCCcEEEEEeC-CCEEEEecCCcCcH
Confidence 33334443 3799999999987 46889999864 57999999999774
No 80
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=95.54 E-value=0.022 Score=52.13 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=23.0
Q ss_pred cCCcEEEEccCCCCCCCCcCHHHHHHHHHHH
Q psy1128 214 ESLPFFSVQFHPEHTAGPADLELLFDIFINA 244 (337)
Q Consensus 214 ~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~ 244 (337)
...+++|+|||||-+ + ..+..|+++|++-
T Consensus 159 ~~~n~~g~QFHPEkS-~-~~G~~ll~nf~~~ 187 (192)
T PRK13142 159 QFNNYIGIQFHPEKS-G-TYGLQILRQAIQG 187 (192)
T ss_pred EcCCEEEEecCcccC-c-HhHHHHHHHHHhc
Confidence 457899999999997 3 4456799999763
No 81
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=94.30 E-value=0.07 Score=50.84 Aligned_cols=38 Identities=26% Similarity=0.377 Sum_probs=28.7
Q ss_pred CceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHhcc
Q psy1128 206 GTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSK 249 (337)
Q Consensus 206 gtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~~k 249 (337)
+.+.+++ ..++++.|||||-+. |. .++++|++++...+
T Consensus 181 ~~~~aV~--qgnvlatqFHPEls~---d~-rih~~Fl~~~~~~~ 218 (248)
T PLN02832 181 KVIVAVK--QGNLLATAFHPELTA---DT-RWHSYFVKMVSESE 218 (248)
T ss_pred ceEEEEE--eCCEEEEEccCccCC---cc-HHHHHHHHHHHHhh
Confidence 3455554 558999999999884 33 79999999987533
No 82
>KOG0623|consensus
Probab=93.48 E-value=0.13 Score=51.31 Aligned_cols=80 Identities=24% Similarity=0.309 Sum_probs=45.4
Q ss_pred CCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHhccCCCCCCCccc-----cccccCCCccHHHHHHHcC-----------
Q psy1128 215 SLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSKTRTPVPPIRK-----TIYDTLVPKDEALIAKSFQ----------- 278 (337)
Q Consensus 215 ~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~~k~~~~~~~v~~-----~l~~~~~~~sD~~IA~l~~----------- 278 (337)
...++++|||||-+ |.. +...+++|+.. +.+++++ .+-++..+++-+.||-|=-
T Consensus 180 knN~~AtQFHPEKS-G~a-GL~vl~~FL~~--------~~ppips~e~~kl~en~~sgLtkRiIACLDVRtND~GDLVVT 249 (541)
T KOG0623|consen 180 KNNVHATQFHPEKS-GEA-GLSVLRRFLHQ--------QSPPIPSAETQKLMENKASGLTKRIIACLDVRTNDKGDLVVT 249 (541)
T ss_pred cCceeeEecccccc-cch-hHHHHHHHHhc--------cCCCCCchhhhhhhhccchhhhhhheeeeeeeccCCCceEEe
Confidence 34789999999987 433 34689999873 1233433 3444446666666654420
Q ss_pred -CCChhHHHHHHHhCCCceeeeeecccc
Q psy1128 279 -TPKKTSVRKMREDNGIRPYNKQIDTLA 305 (337)
Q Consensus 279 -~~~e~~Vr~~R~~~~I~p~yk~VDtcA 305 (337)
-+ .-+||+.-....+.--=|.||.|.
T Consensus 250 KGD-QYDVREkS~g~eVRNLGKPV~Laq 276 (541)
T KOG0623|consen 250 KGD-QYDVREKSNGNEVRNLGKPVDLAQ 276 (541)
T ss_pred cCc-ccchhhccCchhhhccCChHHHHH
Confidence 01 234444444445555556666653
No 83
>KOG1559|consensus
Probab=91.92 E-value=0.11 Score=49.62 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=24.3
Q ss_pred eeeEEEeCCCCc---eEEEeecCCcEEEEccCCCCCC
Q psy1128 196 WQPLFTNANDGT---NEGIVHESLPFFSVQFHPEHTA 229 (337)
Q Consensus 196 l~vt~~n~nDgt---vEGi~h~~~pi~gVQfHPEa~p 229 (337)
|.+.-.+.+++. |--++.+.+|+.|+|||||-.+
T Consensus 236 FnilTT~~D~~~k~fvSTv~~~kYPvtgfQWHPEKna 272 (340)
T KOG1559|consen 236 FNILTTCTDGNSKTFVSTVESKKYPVTGFQWHPEKNA 272 (340)
T ss_pred HhheeeecCCCceEEEEeecceeccceeeeecCccCc
Confidence 455555654434 4456778899999999999664
No 84
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=90.47 E-value=0.7 Score=45.28 Aligned_cols=50 Identities=14% Similarity=0.093 Sum_probs=39.3
Q ss_pred CCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHh
Q psy1128 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRD 247 (337)
Q Consensus 192 L~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~ 247 (337)
+|+++++.+.|. +.-+.++..++..+++||+|||-. ...|-+++..-+.+
T Consensus 204 ~~~~l~vLA~S~-~~gv~~~~~~~~r~~~vQgHPEYd-----~~tL~~EY~RD~~~ 253 (302)
T PRK05368 204 AATGLEILAESE-EAGVYLFASKDKREVFVTGHPEYD-----ADTLAQEYFRDLGA 253 (302)
T ss_pred cCCCCEEEecCC-CCCeEEEEeCCCCEEEEECCCCCC-----HHHHHHHHHHHHhC
Confidence 578999999885 567888888888999999999954 45677777766553
No 85
>KOG2387|consensus
Probab=87.14 E-value=0.42 Score=49.13 Aligned_cols=40 Identities=38% Similarity=0.514 Sum_probs=31.0
Q ss_pred CceeeEEEeCCCCceEEEeecCCcEE-EEccCCCCCCCCcC
Q psy1128 194 QGWQPLFTNANDGTNEGIVHESLPFF-SVQFHPEHTAGPAD 233 (337)
Q Consensus 194 ~~l~vt~~n~nDgtvEGi~h~~~pi~-gVQfHPEa~pgp~d 233 (337)
.|+.-...+......|=++.+++|+| |+|||||-..-|..
T Consensus 495 ~Gl~FvGkd~~g~rmeI~El~~HP~fVg~QfHPE~~srp~k 535 (585)
T KOG2387|consen 495 AGLSFVGKDVTGKRMEIIELESHPFFVGVQFHPEFKSRPDK 535 (585)
T ss_pred cCcEEEeecCCCcEEEEEEcCCCCceeeeccCHHHhcCCCC
Confidence 47887887764446888899999997 99999997655544
No 86
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=76.41 E-value=2 Score=29.01 Aligned_cols=31 Identities=39% Similarity=0.647 Sum_probs=24.3
Q ss_pred CcCCHHHHHHHCCCCeEeccchHH-HHHHHHh
Q psy1128 76 SASTLGEWLRAHNIPALANVDTRR-LTKHIRE 106 (337)
Q Consensus 76 ~~~sl~~~L~~~~ipgi~gvDTRa-Lt~~iR~ 106 (337)
+...|.+||+++|||.=.+..||. |.+.+|+
T Consensus 5 s~~~L~~wL~~~gi~~~~~~~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVPKSAKTRDELLKLAKK 36 (38)
T ss_pred CHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHH
Confidence 356799999999998877777774 6666665
No 87
>KOG1273|consensus
Probab=74.19 E-value=9.1 Score=38.16 Aligned_cols=68 Identities=15% Similarity=0.314 Sum_probs=48.1
Q ss_pred eEEEEecCCcchHHHHHHHCCCEEEEecCCCCC----CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCC
Q psy1128 158 HLCVVDCGLKYNQLRCLIQRGAKLSVIPWNHPI----KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPE 226 (337)
Q Consensus 158 ~I~viDfGiK~~ilr~L~~~G~~v~vvP~~~~~----sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPE 226 (337)
+|+++||-. ++|-|.|..+=--|+.+-|...- +-..++.+.-+++-+|++--=..-+-||++.||||-
T Consensus 46 ~vvI~D~~T-~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~ 117 (405)
T KOG1273|consen 46 RVVIYDFDT-FRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPR 117 (405)
T ss_pred cEEEEEccc-cchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccc
Confidence 799999965 45888888775566666664433 223478888888888873322234569999999995
No 88
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=70.02 E-value=8.8 Score=35.29 Aligned_cols=46 Identities=26% Similarity=0.369 Sum_probs=33.3
Q ss_pred CceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHH
Q psy1128 194 QGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVR 246 (337)
Q Consensus 194 ~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~ 246 (337)
++.++.+.. ||.+-+++ ..++++.-||||-. .|...+.+.|++++.
T Consensus 142 ~~v~vla~~--~g~iVav~--qgn~latsFHPELT---~D~~r~H~yFl~~v~ 187 (188)
T PF01174_consen 142 EGVEVLAEL--DGKIVAVR--QGNILATSFHPELT---DDDTRIHEYFLEMVV 187 (188)
T ss_dssp TTEEEEEEE--TTEEEEEE--ETTEEEESS-GGGS---STHCHHHHHHHHHHC
T ss_pred ccccccccc--ccceEEEE--ecCEEEEEeCCccc---CchhHHHHHHHHHhh
Confidence 577887765 46777776 56899999999976 452358888998864
No 89
>PF04552 Sigma54_DBD: Sigma-54, DNA binding domain; InterPro: IPR007634 This DNA-binding domain is based on peptide fragmentation data. This domain is proximal to DNA in the promoter/holoenzyme complex. Furthermore, this region contains a putative helix-turn-helix motif. At the C terminus, there is a highly conserved region known as the RpoN box and is the signature of the sigma-54 proteins [].; PDB: 2AHQ_A 2O9L_A 2O8K_A.
Probab=66.44 E-value=3.4 Score=36.85 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=23.7
Q ss_pred cCCCccHHHHHHHcC-----CCChhHHHHHHHhCCCceeee
Q psy1128 264 TLVPKDEALIAKSFQ-----TPKKTSVRKMREDNGIRPYNK 299 (337)
Q Consensus 264 ~~~~~sD~~IA~l~~-----~~~e~~Vr~~R~~~~I~p~yk 299 (337)
+...+||..|+.+++ ++ --.|.++|+++||-+++.
T Consensus 118 ~~~PlSD~~i~~~L~~~gi~is-RRTVaKYR~~L~Ip~s~~ 157 (160)
T PF04552_consen 118 KKKPLSDQEIAELLKEEGIKIS-RRTVAKYREELGIPSSSQ 157 (160)
T ss_dssp TTS---HHHHHHHHTTTTS----HHHHHHHHHHHT-S-SHH
T ss_pred CCCCCCHHHHHHHHHHcCCCcc-HHHHHHHHHHcCCCChhh
Confidence 456789999999994 45 779999999999988753
No 90
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=62.64 E-value=7.5 Score=37.25 Aligned_cols=74 Identities=24% Similarity=0.205 Sum_probs=48.9
Q ss_pred cchHHHHHHHCCCEEEEecCCCCCCCCCcee-eEEEeCCC--CceEEEeecCCcEEEEccCCCCCCCCc-----------
Q psy1128 167 KYNQLRCLIQRGAKLSVIPWNHPIKVPQGWQ-PLFTNAND--GTNEGIVHESLPFFSVQFHPEHTAGPA----------- 232 (337)
Q Consensus 167 K~~ilr~L~~~G~~v~vvP~~~~~sL~~~l~-vt~~n~nD--gtvEGi~h~~~pi~gVQfHPEa~pgp~----------- 232 (337)
....+..|.+.|.-+.-+ .+ +.+.. .--.|+|- ..|+||-.++.+++|.=-|||+.--|.
T Consensus 170 ~~~~l~~l~~~~~i~~~Y-~d-----~~g~~~~~p~NPNGs~~~IAGi~~~~G~vlglMpHPEr~~~~~~~~~~~~~~~~ 243 (261)
T PRK01175 170 EEEILERLIENDQIVFRY-VD-----ENGNYAGYPWNPNGSIYNIAGITNEKGNVIGLMPHPERAFYGYQHPYWEKEEDY 243 (261)
T ss_pred CHHHHHHHHHCCcEEEEE-eC-----CCCCCCCCCCCCCCChhhcceeECCCCCEEEEcCCHHHhhchhhccccccccCC
Confidence 456778888877644444 11 11110 11135542 348999999999999999999984433
Q ss_pred -CHHHHHHHHHHHHH
Q psy1128 233 -DLELLFDIFINAVR 246 (337)
Q Consensus 233 -d~~~lF~~Fi~~~~ 246 (337)
|+..||+++++.++
T Consensus 244 ~~g~~~f~~~~~~~~ 258 (261)
T PRK01175 244 GDGKIFFDSLINYLR 258 (261)
T ss_pred CchHHHHHHHHHHHH
Confidence 88899999887543
No 91
>KOG3179|consensus
Probab=61.29 E-value=17 Score=34.19 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=30.1
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCC
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHT 228 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~ 228 (337)
.||++++..+.+ .+..+|.+...+ .++++|=|||-.
T Consensus 160 e~PE~a~llasS-e~ceve~fs~~~-~~l~fQGHPEyn 195 (245)
T KOG3179|consen 160 ELPEGAELLASS-EKCEVEMFSIED-HLLCFQGHPEYN 195 (245)
T ss_pred cCCchhhhhccc-cccceEEEEecc-eEEEecCCchhh
Confidence 679999999987 478999986554 689999999965
No 92
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=60.28 E-value=17 Score=34.39 Aligned_cols=70 Identities=24% Similarity=0.232 Sum_probs=49.0
Q ss_pred hHHHHHHHCCCEEEEecCCCCCCCCCceeeEEEeCCCCc---eEEEeecCCcEEEEccCCCCC----CCCcCHHHHHHHH
Q psy1128 169 NQLRCLIQRGAKLSVIPWNHPIKVPQGWQPLFTNANDGT---NEGIVHESLPFFSVQFHPEHT----AGPADLELLFDIF 241 (337)
Q Consensus 169 ~ilr~L~~~G~~v~vvP~~~~~sL~~~l~vt~~n~nDgt---vEGi~h~~~pi~gVQfHPEa~----pgp~d~~~lF~~F 241 (337)
..|..|.+.|.-+.-+-- ..+-.-...|+| |+ |+||...+..|++.==|||+. .|..|+..||+..
T Consensus 154 ~~l~~l~~ngqvvfrY~d------~~G~~~~~~NPN-GS~~~IaGI~n~~G~V~gmMPHPERa~~~~~g~~Dg~~lF~s~ 226 (231)
T COG0047 154 ETLAELEENGQVVFRYVD------NNGETEEYANPN-GSVNGIAGITNEDGNVLGMMPHPERASESLLGGEDGLRLFRSA 226 (231)
T ss_pred HHHHHHhhCCeEEEEEec------CCCceeeeeCCC-CChhhceeEEcCCCCEEEecCCchhhhhcccCCchHHHHHHHH
Confidence 478888877764433311 111122337876 55 888899999999999999986 4567888899988
Q ss_pred HHHH
Q psy1128 242 INAV 245 (337)
Q Consensus 242 i~~~ 245 (337)
++.+
T Consensus 227 ~~~~ 230 (231)
T COG0047 227 RKYL 230 (231)
T ss_pred HHhh
Confidence 8764
No 93
>COG2403 Predicted GTPase [General function prediction only]
Probab=47.49 E-value=44 Score=34.24 Aligned_cols=47 Identities=26% Similarity=0.186 Sum_probs=40.4
Q ss_pred CcCCcCCHHHHHHHCCCCeEeccchHHHHHHHHhcCceeEEEEeCCC
Q psy1128 73 HWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSV 119 (337)
Q Consensus 73 ~~~~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR~~G~~~g~i~~~~~ 119 (337)
+-+...||...|.-+|||-..+=|--.|.|.||++++=..++.-.+.
T Consensus 47 er~yppsleg~~~p~Gvpi~~~k~~~~lek~ire~~VD~~VlaySDv 93 (449)
T COG2403 47 ERIYPPSLEGVLYPLGVPILPEKDYDDLEKIIREKDVDIVVLAYSDV 93 (449)
T ss_pred cccCCCCcccccccCCccccccccHHHHHHHHHHcCCCeEEEEcccC
Confidence 34566789999999999999999999999999999998888866544
No 94
>PF12728 HTH_17: Helix-turn-helix domain
Probab=46.31 E-value=31 Score=23.93 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=24.7
Q ss_pred CccHHHHHHHcCCCChhHHHHHHHhCCCcee
Q psy1128 267 PKDEALIAKSFQTPKKTSVRKMREDNGIRPY 297 (337)
Q Consensus 267 ~~sD~~IA~l~~~~~e~~Vr~~R~~~~I~p~ 297 (337)
++|-.++|+++|++ ...|+++.++-.|.|.
T Consensus 1 ~lt~~e~a~~l~is-~~tv~~~~~~g~i~~~ 30 (51)
T PF12728_consen 1 YLTVKEAAELLGIS-RSTVYRWIRQGKIPPF 30 (51)
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHHcCCCCeE
Confidence 35678999999998 9999999988665544
No 95
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=46.13 E-value=17 Score=34.01 Aligned_cols=67 Identities=24% Similarity=0.216 Sum_probs=41.3
Q ss_pred chHHHHHHHCCCEEEEecCCCCCCCCCceeeEEEeCCCCc---eEEEeecCCcEEEEccCCCCCCCC---------cCHH
Q psy1128 168 YNQLRCLIQRGAKLSVIPWNHPIKVPQGWQPLFTNANDGT---NEGIVHESLPFFSVQFHPEHTAGP---------ADLE 235 (337)
Q Consensus 168 ~~ilr~L~~~G~~v~vvP~~~~~sL~~~l~vt~~n~nDgt---vEGi~h~~~pi~gVQfHPEa~pgp---------~d~~ 235 (337)
...+..|.+.|--+ - |......+ ..---.|+| |+ |+||-.++.+++|.=.|||++--| .++.
T Consensus 158 ~~~~~~l~~~~~i~-~--y~~~~~~~--~~~yp~NPn-Gs~~~iAgi~~~~GrvlglMphPer~~~~~q~~~~~~~~~~~ 231 (238)
T cd01740 158 DETLAELEENGQIA-Q--YVDDDGNV--TERYPANPN-GSLDGIAGICNEDGRVLGMMPHPERAVEPWQWERLLGGSDGL 231 (238)
T ss_pred HHHHHHHHHCCCEE-E--EEcCCCCc--cccCCCCCC-CChhcceEEEcCCCCEEEEcCChHHcccccccccccCCCccH
Confidence 45678888877644 2 21111111 001124665 44 899999999999999999987433 3566
Q ss_pred HHHHH
Q psy1128 236 LLFDI 240 (337)
Q Consensus 236 ~lF~~ 240 (337)
.+|++
T Consensus 232 ~~F~~ 236 (238)
T cd01740 232 KLFRN 236 (238)
T ss_pred HHHhh
Confidence 67765
No 96
>KOG1399|consensus
Probab=45.45 E-value=24 Score=36.56 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=27.6
Q ss_pred eeEEEEecCCcc-hHHHHHHHCCCEEEEecCCCC
Q psy1128 157 VHLCVVDCGLKY-NQLRCLIQRGAKLSVIPWNHP 189 (337)
Q Consensus 157 ~~I~viDfGiK~-~ilr~L~~~G~~v~vvP~~~~ 189 (337)
++|++|=.|... .-+|+|++.|.+++|+--...
T Consensus 7 ~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 7 KDVAVIGAGPAGLAAARELLREGHEVVVFERTDD 40 (448)
T ss_pred CceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence 579999999888 578899999999999965433
No 97
>TIGR02395 rpoN_sigma RNA polymerase sigma-54 factor. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called sigma-54, or RpoN (unrelated to sigma 70-type factors such as RpoD/SigA). RpoN is responsible for enhancer-dependent transcription, and its presence characteristically is associated with varied panels of activators, most of which are enhancer-binding proteins (but see Brahmachary, et al., PubMed:15231786). RpoN may be responsible for transcription of nitrogen fixation genes, flagellins, pilins, etc., and synonyms for the gene symbol rpoN, such as ntrA, reflect these observations
Probab=45.01 E-value=20 Score=36.75 Aligned_cols=36 Identities=31% Similarity=0.428 Sum_probs=30.1
Q ss_pred ccCCCccHHHHHHHcC-----CCChhHHHHHHHhCCCceeee
Q psy1128 263 DTLVPKDEALIAKSFQ-----TPKKTSVRKMREDNGIRPYNK 299 (337)
Q Consensus 263 ~~~~~~sD~~IA~l~~-----~~~e~~Vr~~R~~~~I~p~yk 299 (337)
+|...+||..||.+++ ++ --.|.++|+++||-++++
T Consensus 387 ~~~~PlSD~~I~~~L~~~Gi~Ia-RRTVaKYRe~L~Ip~s~~ 427 (429)
T TIGR02395 387 DKRKPLSDQKIAELLKEKGIKIA-RRTVAKYREELGIPSSSK 427 (429)
T ss_pred CCCCCCCHHHHHHHHHhcCCCee-hHHHHHHHHHcCCCcccc
Confidence 4557889999999983 45 679999999999998875
No 98
>PRK12469 RNA polymerase factor sigma-54; Provisional
Probab=43.30 E-value=13 Score=38.76 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=29.7
Q ss_pred ccCCCccHHHHHHHcC-----CCChhHHHHHHHhCCCceeee
Q psy1128 263 DTLVPKDEALIAKSFQ-----TPKKTSVRKMREDNGIRPYNK 299 (337)
Q Consensus 263 ~~~~~~sD~~IA~l~~-----~~~e~~Vr~~R~~~~I~p~yk 299 (337)
++...+||..||.+++ ++ --.|.++|+++||-|+++
T Consensus 437 d~~kPLSD~~I~~~L~~~GI~IA-RRTVAKYRe~L~IpsS~~ 477 (481)
T PRK12469 437 QAGDPLSDVALAEMLAGRGVLIA-RRTVAKYREAMKIPPAEL 477 (481)
T ss_pred CCCCCCCHHHHHHHHHhcCCCee-chhHHHHHHHcCCCChhh
Confidence 3557899999999993 33 578999999999998765
No 99
>PRK05932 RNA polymerase factor sigma-54; Reviewed
Probab=43.25 E-value=19 Score=37.26 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=28.8
Q ss_pred CCCccHHHHHHHc-----CCCChhHHHHHHHhCCCceeee
Q psy1128 265 LVPKDEALIAKSF-----QTPKKTSVRKMREDNGIRPYNK 299 (337)
Q Consensus 265 ~~~~sD~~IA~l~-----~~~~e~~Vr~~R~~~~I~p~yk 299 (337)
...+||..||.++ .++ --.|.++|+++||-++++
T Consensus 413 ~~PlSD~~I~~~L~~~Gi~Ia-RRTVaKYRe~L~Ip~s~~ 451 (455)
T PRK05932 413 KKPLSDSKIAELLKEQGIDVA-RRTVAKYREALNIPSSSQ 451 (455)
T ss_pred CCCCCHHHHHHHHHHcCCCee-hHHHHHHHHHcCCCChHh
Confidence 3688999999999 344 679999999999998765
No 100
>PF06242 DUF1013: Protein of unknown function (DUF1013); InterPro: IPR010421 This is a family of uncharacterised proteins found in Proteobacteria.
Probab=42.94 E-value=22 Score=31.16 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=20.8
Q ss_pred CCccHHHHHHHcCCCChhHHHHHHHh
Q psy1128 266 VPKDEALIAKSFQTPKKTSVRKMRED 291 (337)
Q Consensus 266 ~~~sD~~IA~l~~~~~e~~Vr~~R~~ 291 (337)
-.++|.||++|.|++ ...|.+.|..
T Consensus 82 Pel~DaQI~kLiGTT-K~TI~~IR~r 106 (140)
T PF06242_consen 82 PELSDAQIAKLIGTT-KPTIEAIRDR 106 (140)
T ss_pred CcccHHHHHHHhcCc-HHHHHHHhcc
Confidence 345999999999998 8888888876
No 101
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=42.12 E-value=1.3e+02 Score=28.36 Aligned_cols=90 Identities=21% Similarity=0.215 Sum_probs=53.3
Q ss_pred ccchHHHHHHHHhcCceeEEEEeCCCCChhhhhhhcc----------cCCCCcCCccceeeecc--eEEeCCCCCeeEEE
Q psy1128 94 NVDTRRLTKHIRECGVVSGKIVHGSVAPLAVTVEDLV----------FVDPNRGNLVDQVSTKE--VVTYNPTGSVHLCV 161 (337)
Q Consensus 94 gvDTRaLt~~iR~~G~~~g~i~~~~~~~~~~~~~~~~----------~~~~~~~~lv~~VS~~~--~~~~~~~~~~~I~v 161 (337)
..+.-.+.++||+.|..-|+...-.+ +.+.+...+. -|...++.+.+.+-.|= -..+..+.+...+-
T Consensus 95 ~~~~~r~i~~Ik~~G~kaGv~lnP~T-p~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~Ie 173 (220)
T COG0036 95 TEHIHRTIQLIKELGVKAGLVLNPAT-PLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIE 173 (220)
T ss_pred CcCHHHHHHHHHHcCCeEEEEECCCC-CHHHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEE
Confidence 55666788899999999998876554 4433221111 12222233332222110 00011111145788
Q ss_pred EecCCcchHHHHHHHCCCEEEEe
Q psy1128 162 VDCGLKYNQLRCLIQRGAKLSVI 184 (337)
Q Consensus 162 iDfGiK~~ilr~L~~~G~~v~vv 184 (337)
+|=|++.+-++.+.+.|.++.|.
T Consensus 174 VDGGI~~~t~~~~~~AGad~~Va 196 (220)
T COG0036 174 VDGGINLETIKQLAAAGADVFVA 196 (220)
T ss_pred EeCCcCHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999887
No 102
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=40.82 E-value=37 Score=31.04 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=23.1
Q ss_pred eeEEEEecCCcc--hHHHHHHHCCC--EEEEe
Q psy1128 157 VHLCVVDCGLKY--NQLRCLIQRGA--KLSVI 184 (337)
Q Consensus 157 ~~I~viDfGiK~--~ilr~L~~~G~--~v~vv 184 (337)
.||++||||.-. ++.+.|.+.|+ ++.++
T Consensus 2 ~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~ 33 (209)
T PRK13146 2 MTVAIIDYGSGNLRSAAKALERAGAGADVVVT 33 (209)
T ss_pred CeEEEEECCCChHHHHHHHHHHcCCCccEEEE
Confidence 379999999955 89999999999 55544
No 103
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=40.67 E-value=24 Score=32.07 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=23.2
Q ss_pred CCccHHHHHHHcCCCChhHHHHHHHhC
Q psy1128 266 VPKDEALIAKSFQTPKKTSVRKMREDN 292 (337)
Q Consensus 266 ~~~sD~~IA~l~~~~~e~~Vr~~R~~~ 292 (337)
|-++|.+||+.+|++ ...|.++|.++
T Consensus 18 g~L~d~~Ia~~lgvs-~~nV~kmR~Kw 43 (181)
T PF04645_consen 18 GRLSDAEIAKELGVS-RVNVWKMRQKW 43 (181)
T ss_pred CCccHHHHHHHHCch-HHHHHHHHHHH
Confidence 457899999999998 99999999885
No 104
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=40.51 E-value=40 Score=31.05 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=25.7
Q ss_pred eEEEEecCCcc--hHHHHHHHCCCEEEEecC
Q psy1128 158 HLCVVDCGLKY--NQLRCLIQRGAKLSVIPW 186 (337)
Q Consensus 158 ~I~viDfGiK~--~ilr~L~~~G~~v~vvP~ 186 (337)
+|.++|+|.-. ++.+.|..+|+++.+++.
T Consensus 3 ~v~iid~~~GN~~sl~~al~~~g~~v~vv~~ 33 (210)
T CHL00188 3 KIGIIDYSMGNLHSVSRAIQQAGQQPCIINS 33 (210)
T ss_pred EEEEEEcCCccHHHHHHHHHHcCCcEEEEcC
Confidence 69999999775 899999999999999954
No 105
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=40.18 E-value=1.5e+02 Score=27.61 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=22.1
Q ss_pred EEEecCCcchHHHHHHHCCCEEEEe
Q psy1128 160 CVVDCGLKYNQLRCLIQRGAKLSVI 184 (337)
Q Consensus 160 ~viDfGiK~~ilr~L~~~G~~v~vv 184 (337)
+.+|.|++..-++.+.+.|+++.|+
T Consensus 170 I~vdGGI~~eni~~l~~aGAd~vVv 194 (220)
T PRK08883 170 LEIDGGVKVDNIREIAEAGADMFVA 194 (220)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 4579999998889999999999887
No 106
>PHA01083 hypothetical protein
Probab=39.73 E-value=18 Score=32.13 Aligned_cols=28 Identities=18% Similarity=0.141 Sum_probs=22.3
Q ss_pred ccCCCccHHHHHHHcCCCChhHHHHHHHh
Q psy1128 263 DTLVPKDEALIAKSFQTPKKTSVRKMRED 291 (337)
Q Consensus 263 ~~~~~~sD~~IA~l~~~~~e~~Vr~~R~~ 291 (337)
++..+.||.+||+-+|++ ...|.+.|+-
T Consensus 12 ~a~~~~sdkqLA~~LGVs-~q~IS~~R~G 39 (149)
T PHA01083 12 KAKNYVQYKQIAHDLGVS-PQKISKMRTG 39 (149)
T ss_pred HHHhhccHHHHHHHhCCC-HHHHHHHHcC
Confidence 345778999999999987 7888887775
No 107
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=38.81 E-value=52 Score=29.97 Aligned_cols=45 Identities=20% Similarity=0.224 Sum_probs=32.4
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHH
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFIN 243 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~ 243 (337)
++.++.+|.+.- |+.+-+++ ..++++.-||||-. .|. .+.+.|++
T Consensus 134 ~~~~~v~vla~~--~~~~v~v~--q~~~l~~~FHPElt---~d~-r~h~~f~~ 178 (179)
T PRK13526 134 VVGNQVDILSKY--QNSPVLLR--QANILVSSFHPELT---QDP-TVHEYFLA 178 (179)
T ss_pred EcCCCcEEEEEE--CCEEEEEE--ECCEEEEEeCCccC---CCc-hHHHHHhc
Confidence 556788888864 45666665 66889999999975 354 47777765
No 108
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=37.80 E-value=1.4e+02 Score=27.34 Aligned_cols=97 Identities=21% Similarity=0.247 Sum_probs=53.5
Q ss_pred HHHHHCCCCeE-----eccchHHHHHHHHhcCceeEEEEeCCCCChhhhhhhcccCCCCcCCccceeeecc-----eEE-
Q psy1128 82 EWLRAHNIPAL-----ANVDTRRLTKHIRECGVVSGKIVHGSVAPLAVTVEDLVFVDPNRGNLVDQVSTKE-----VVT- 150 (337)
Q Consensus 82 ~~L~~~~ipgi-----~gvDTRaLt~~iR~~G~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~VS~~~-----~~~- 150 (337)
+.+.+.|.--| +.-+...+.++||+.|..-|+...-.+ +.+.+...+. ..|+|--.|..- ++.
T Consensus 74 ~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T-~~~~~~~~l~-----~vD~VlvMsV~PG~~Gq~f~~ 147 (201)
T PF00834_consen 74 EEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPET-PVEELEPYLD-----QVDMVLVMSVEPGFGGQKFIP 147 (201)
T ss_dssp HHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS--GGGGTTTGC-----CSSEEEEESS-TTTSSB--HG
T ss_pred HHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCC-CchHHHHHhh-----hcCEEEEEEecCCCCcccccH
Confidence 44555554333 223566788999999988887665444 4444322111 134444444321 000
Q ss_pred -----------e-CCCCCeeEEEEecCCcchHHHHHHHCCCEEEEe
Q psy1128 151 -----------Y-NPTGSVHLCVVDCGLKYNQLRCLIQRGAKLSVI 184 (337)
Q Consensus 151 -----------~-~~~~~~~I~viDfGiK~~ilr~L~~~G~~v~vv 184 (337)
+ ..++..-.+-+|=|+....++.+.+.|+++.|+
T Consensus 148 ~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~~~~~~~~aGad~~V~ 193 (201)
T PF00834_consen 148 EVLEKIRELRKLIPENGLDFEIEVDGGINEENIKQLVEAGADIFVA 193 (201)
T ss_dssp GHHHHHHHHHHHHHHHTCGSEEEEESSESTTTHHHHHHHT--EEEE
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 0 001223577899999999999999999999886
No 109
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=36.71 E-value=67 Score=21.22 Aligned_cols=31 Identities=13% Similarity=0.079 Sum_probs=24.7
Q ss_pred CccHHHHHHHcCCCChhHHHHHHHhCCCceeee
Q psy1128 267 PKDEALIAKSFQTPKKTSVRKMREDNGIRPYNK 299 (337)
Q Consensus 267 ~~sD~~IA~l~~~~~e~~Vr~~R~~~~I~p~yk 299 (337)
+++-.++|+++|++ ...|+++.++. ..|..+
T Consensus 1 ~lt~~e~a~~lgis-~~ti~~~~~~g-~i~~~~ 31 (49)
T TIGR01764 1 YLTVEEAAEYLGVS-KDTVYRLIHEG-ELPAYR 31 (49)
T ss_pred CCCHHHHHHHHCCC-HHHHHHHHHcC-CCCeEE
Confidence 35678899999998 99999998874 455554
No 110
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=35.94 E-value=52 Score=28.97 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=27.9
Q ss_pred eEEEEecCCcchHHHHHHHCCCEEEEecCCCCC
Q psy1128 158 HLCVVDCGLKYNQLRCLIQRGAKLSVIPWNHPI 190 (337)
Q Consensus 158 ~I~viDfGiK~~ilr~L~~~G~~v~vvP~~~~~ 190 (337)
++++.|+|+....++.|.+.-+++.|..++++.
T Consensus 91 k~ilY~LgL~~~~i~~L~~~~~n~evr~Fn~s~ 123 (142)
T PF07801_consen 91 KIILYDLGLSEEQIKKLKKNFCNVEVRKFNFSK 123 (142)
T ss_pred cEEEEeCCCCHHHHHHHHhcCCceEEEECCCcc
Confidence 799999999999999998766777877777654
No 111
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=35.72 E-value=3.4e+02 Score=25.26 Aligned_cols=101 Identities=16% Similarity=0.077 Sum_probs=54.1
Q ss_pred HHHHHHHCCCCeEeccc--------hHHHHHHHHhcCceeEEEEeCCCCChhhhhhhcccCC------CC---cCCccce
Q psy1128 80 LGEWLRAHNIPALANVD--------TRRLTKHIRECGVVSGKIVHGSVAPLAVTVEDLVFVD------PN---RGNLVDQ 142 (337)
Q Consensus 80 l~~~L~~~~ipgi~gvD--------TRaLt~~iR~~G~~~g~i~~~~~~~~~~~~~~~~~~~------~~---~~~lv~~ 142 (337)
+-+.+++.|+=||.=.| -..+.+.+|++|...+...+... +.+.+...+...+ .+ +..+...
T Consensus 93 ~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T-~~e~l~~~~~~~~~~l~msv~~~~g~~~~~~ 171 (244)
T PRK13125 93 FLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKF-PDLLIHRLSKLSPLFIYYGLRPATGVPLPVS 171 (244)
T ss_pred HHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCC-CHHHHHHHHHhCCCEEEEEeCCCCCCCchHH
Confidence 34566777777766543 34677888999988877766444 3333222111111 00 0001000
Q ss_pred eeec--ceEEeCCCCCeeEEEEecCCcc-hHHHHHHHCCCEEEEe
Q psy1128 143 VSTK--EVVTYNPTGSVHLCVVDCGLKY-NQLRCLIQRGAKLSVI 184 (337)
Q Consensus 143 VS~~--~~~~~~~~~~~~I~viDfGiK~-~ilr~L~~~G~~v~vv 184 (337)
+..+ .-..+.+ . +.+++|||++. .-++.+.+.|++..|+
T Consensus 172 ~~~~i~~lr~~~~--~-~~i~v~gGI~~~e~i~~~~~~gaD~vvv 213 (244)
T PRK13125 172 VERNIKRVRNLVG--N-KYLVVGFGLDSPEDARDALSAGADGVVV 213 (244)
T ss_pred HHHHHHHHHHhcC--C-CCEEEeCCcCCHHHHHHHHHcCCCEEEE
Confidence 0000 0000011 1 23679999955 7888888999998887
No 112
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=35.45 E-value=1e+02 Score=28.58 Aligned_cols=48 Identities=31% Similarity=0.427 Sum_probs=32.0
Q ss_pred CCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHh
Q psy1128 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRD 247 (337)
Q Consensus 192 L~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~ 247 (337)
+.++.++.+. + |+.+-+.+ +.++++.-||||-. .|. .+-+.|++++..
T Consensus 145 vg~~V~vLa~-l-~~~iVav~--qgn~LatsFHPELT---~D~-r~Heyf~~~v~~ 192 (194)
T COG0311 145 VGDGVEVLAT-L-DGRIVAVK--QGNILATSFHPELT---DDT-RLHEYFLDMVLG 192 (194)
T ss_pred hcCcceEeee-e-CCEEEEEE--eCCEEEEecCcccc---CCc-cHHHHHHHHhhc
Confidence 3346777775 3 45555554 55999999999976 343 467778877653
No 113
>PF06218 NPR2: Nitrogen permease regulator 2; InterPro: IPR009348 This family of regulators are involved in post-translational control of nitrogen permease.
Probab=33.86 E-value=9.9 Score=39.14 Aligned_cols=37 Identities=35% Similarity=0.628 Sum_probs=31.5
Q ss_pred CcCCcCCHHHHHHHCCCCeEeccchHHHHHHHHhcCceeEEE
Q psy1128 73 HWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKI 114 (337)
Q Consensus 73 ~~~~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR~~G~~~g~i 114 (337)
..+...||.+|+++|... +.+||-|+|+. .|.++|.|
T Consensus 332 sl~~G~tl~dw~~~~~~~-~~~IDvRRfI~----FGvikGfi 368 (428)
T PF06218_consen 332 SLQQGLTLKDWCERHSPR-LNNIDVRRFIQ----FGVIKGFI 368 (428)
T ss_pred hccCCCCHHHHHHHhhHh-hcCCChHHhhH----HHHHHHHH
Confidence 346788999999999876 69999999876 78888887
No 114
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=33.23 E-value=41 Score=23.08 Aligned_cols=25 Identities=16% Similarity=0.085 Sum_probs=18.7
Q ss_pred CccHHHHHHHcCCCChhHHHHHHHhC
Q psy1128 267 PKDEALIAKSFQTPKKTSVRKMREDN 292 (337)
Q Consensus 267 ~~sD~~IA~l~~~~~e~~Vr~~R~~~ 292 (337)
+.|..+||+.+|++ ...|++.++.+
T Consensus 17 G~s~~~ia~~lgvs-~~Tv~~w~kr~ 41 (50)
T PF13384_consen 17 GWSIREIAKRLGVS-RSTVYRWIKRY 41 (50)
T ss_dssp T--HHHHHHHHTS--HHHHHHHHT--
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHHHc
Confidence 67999999999998 99999888775
No 115
>KOG4015|consensus
Probab=31.40 E-value=32 Score=29.95 Aligned_cols=26 Identities=27% Similarity=0.495 Sum_probs=22.7
Q ss_pred CcCCHHHHHHHCCCCeEeccchHHHHHHHH
Q psy1128 76 SASTLGEWLRAHNIPALANVDTRRLTKHIR 105 (337)
Q Consensus 76 ~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR 105 (337)
+..++++||++-|| |+.||++++.+-
T Consensus 13 ~SENFdeymk~lGV----~~~~Rk~a~~~k 38 (133)
T KOG4015|consen 13 SSENFDEYLKALGV----GWATRKIAKLAK 38 (133)
T ss_pred eccCHHHHHHhcCC----cHhHHHHHhhcC
Confidence 56789999999999 789999998774
No 116
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=30.82 E-value=2.6e+02 Score=26.34 Aligned_cols=83 Identities=17% Similarity=0.237 Sum_probs=48.3
Q ss_pred hHHHHHHHHhcCceeEEEEeCCCCChhhhhhhcccCCCCcCCccceeeecc-----eE------------Ee-CCCCCee
Q psy1128 97 TRRLTKHIRECGVVSGKIVHGSVAPLAVTVEDLVFVDPNRGNLVDQVSTKE-----VV------------TY-NPTGSVH 158 (337)
Q Consensus 97 TRaLt~~iR~~G~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~VS~~~-----~~------------~~-~~~~~~~ 158 (337)
.-++.++||+.|..-|+...-.+ +.+.+...+.. .|+|--.|..- ++ .+ ...+.-.
T Consensus 97 ~~~~i~~Ik~~G~kaGlalnP~T-~~~~l~~~l~~-----vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~ 170 (229)
T PRK09722 97 AFRLIDEIRRAGMKVGLVLNPET-PVESIKYYIHL-----LDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEY 170 (229)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCC-CHHHHHHHHHh-----cCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCe
Confidence 44566889999976666544333 44443322222 23333333210 00 00 1112124
Q ss_pred EEEEecCCcchHHHHHHHCCCEEEEec
Q psy1128 159 LCVVDCGLKYNQLRCLIQRGAKLSVIP 185 (337)
Q Consensus 159 I~viDfGiK~~ilr~L~~~G~~v~vvP 185 (337)
..-+|=|++.+-++.+.+.|+++.|+=
T Consensus 171 ~IeVDGGI~~~~i~~~~~aGad~~V~G 197 (229)
T PRK09722 171 LIEVDGSCNQKTYEKLMEAGADVFIVG 197 (229)
T ss_pred EEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 588999999999999999999999883
No 117
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=29.70 E-value=3.1e+02 Score=25.63 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=24.4
Q ss_pred eEEEEecCCcchHHHHHHHCCCEEEEe
Q psy1128 158 HLCVVDCGLKYNQLRCLIQRGAKLSVI 184 (337)
Q Consensus 158 ~I~viDfGiK~~ilr~L~~~G~~v~vv 184 (337)
..+-+|=|+...-++.+.+.|+++.|+
T Consensus 172 ~~IeVDGGI~~eti~~l~~aGaDi~V~ 198 (223)
T PRK08745 172 IRLEIDGGVKADNIGAIAAAGADTFVA 198 (223)
T ss_pred eeEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 457899999999999999999999988
No 118
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=29.07 E-value=70 Score=29.32 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=24.7
Q ss_pred EEEEecCCcc--hHHHHHHHCCCEEEEecC
Q psy1128 159 LCVVDCGLKY--NQLRCLIQRGAKLSVIPW 186 (337)
Q Consensus 159 I~viDfGiK~--~ilr~L~~~G~~v~vvP~ 186 (337)
|+++|+|.-+ |..+.|.+.|+++.++..
T Consensus 2 i~iidyg~gN~~s~~~al~~~g~~~~~v~~ 31 (192)
T PRK13142 2 IVIVDYGLGNISNVKRAIEHLGYEVVVSNT 31 (192)
T ss_pred EEEEEcCCccHHHHHHHHHHcCCCEEEEeC
Confidence 7899999988 899999999999998854
No 119
>PF00853 Runt: Runt domain; InterPro: IPR013524 The AML1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia []. The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene []. The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction. In addition to the highly-conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters. The protein is a heterodimer of alpha- and beta-subunits. The alpha-subunit binds DNA as a monomer, and appears to have a role in the development of normal hematopoiesis. CBF is a nuclear protein expressed in numerous tissue types, except brain and heart; highest levels have been found to occur in thymus, bone marrow and peripheral blood. This domain occurs towards the N terminus of the proteins in this entry.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1E50_E 1LJM_A 1CO1_A 1H9D_C 1CMO_A 1EAO_B 1HJC_D 1HJB_F 2J6W_B 1EAN_A ....
Probab=26.41 E-value=31 Score=29.83 Aligned_cols=33 Identities=30% Similarity=0.499 Sum_probs=20.2
Q ss_pred CCCCcCCcCCHHHHHHHCCCCeEeccchHHHHHHHHhcCceeEEEE
Q psy1128 70 TPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIV 115 (337)
Q Consensus 70 ~~s~~~~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR~~G~~~g~i~ 115 (337)
-|+||||..||..-+ +|..+..|- .|++.-+.+
T Consensus 28 LP~HWR~NKsLP~~F---kVvalg~V~----------DGT~Vtv~A 60 (135)
T PF00853_consen 28 LPSHWRSNKSLPVAF---KVVALGDVP----------DGTLVTVMA 60 (135)
T ss_dssp -TSEEETTSS-SS-E---EEEESSS-S----------TTEEEEEEE
T ss_pred ccccccccCCCCCce---eEEEEEEcC----------CCcEEEEEe
Confidence 399999999997643 455554432 577775544
No 120
>PF10743 Phage_Cox: Regulatory phage protein cox; InterPro: IPR019679 Phage Cox proteins are expressed by Enterobacteria phages. The Cox protein is a 79-residue basic protein with a predicted strong helix-turn-helix DNA-binding motif. It inhibits integrative recombination and it activates site-specific excision of the HP1 genome from the Haemophilus influenzae chromosome, Hp1. Cox appears to function as a tetramer. Cox binding sites consist of two direct repeats of the consensus motif 5'-GGTMAWWWWA, one Cox tetramer binding to each motif. Cox binding interferes with the interaction of HP1 integrase with one of its binding sites, IBS5. This competition is central to directional control. Both Cox binding sites are needed for full inhibition of integration and for activating excision, because it plays a positive role in assembling the nucleoprotein complexes that produce excisive recombination, by inducing the formation of a critical conformation in those complexes [].
Probab=25.92 E-value=1.3e+02 Score=24.33 Aligned_cols=40 Identities=20% Similarity=0.113 Sum_probs=34.0
Q ss_pred cCCCccHHHHHHHcCCCChhHHHHHHHhCCCceeeeeecccc
Q psy1128 264 TLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLA 305 (337)
Q Consensus 264 ~~~~~sD~~IA~l~~~~~e~~Vr~~R~~~~I~p~yk~VDtcA 305 (337)
..+.++-...|.+.|.+ +..||.+.++ |-.|...+-|...
T Consensus 9 p~d~v~~~~FA~~IGKt-~sAVr~Mi~~-gKLP~i~~~dP~~ 48 (87)
T PF10743_consen 9 PSDAVTYEKFAEYIGKT-PSAVRKMIKA-GKLPVIEMRDPEK 48 (87)
T ss_pred hccccCHHHHHHHHCCC-HHHHHHHHHc-CCCCeEeccCCCC
Confidence 34566778899999998 9999999988 5679999999876
No 121
>PRK14057 epimerase; Provisional
Probab=25.58 E-value=3.6e+02 Score=25.91 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=24.0
Q ss_pred eEEEEecCCcchHHHHHHHCCCEEEEe
Q psy1128 158 HLCVVDCGLKYNQLRCLIQRGAKLSVI 184 (337)
Q Consensus 158 ~I~viDfGiK~~ilr~L~~~G~~v~vv 184 (337)
..+-+|=|++.+-++.|.+.|+++.|.
T Consensus 194 ~~IeVDGGI~~~ti~~l~~aGad~~V~ 220 (254)
T PRK14057 194 KIIVIDGSLTQDQLPSLIAQGIDRVVS 220 (254)
T ss_pred ceEEEECCCCHHHHHHHHHCCCCEEEE
Confidence 457899999999999999999998887
No 122
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=24.88 E-value=1.2e+02 Score=29.06 Aligned_cols=73 Identities=19% Similarity=0.150 Sum_probs=41.6
Q ss_pred chHHHHHHHCCCEEEEecCCCCCCCCCceeeEEEeCCC--CceEEEeecCCcEEEEccCCCCCCC----C---------c
Q psy1128 168 YNQLRCLIQRGAKLSVIPWNHPIKVPQGWQPLFTNAND--GTNEGIVHESLPFFSVQFHPEHTAG----P---------A 232 (337)
Q Consensus 168 ~~ilr~L~~~G~~v~vvP~~~~~sL~~~l~vt~~n~nD--gtvEGi~h~~~pi~gVQfHPEa~pg----p---------~ 232 (337)
...+..|.+.|.-+..+ ++ ....|. .---.|+|- ..|+||-..+.+++|.=.|||++-- | .
T Consensus 171 ~~~l~~l~~~~qi~~~Y-~~-~~g~~a--~~yP~NPNGS~~~IAGics~~GrvlglMpHPEr~~~~~~~~~~p~~~~~~s 246 (259)
T PF13507_consen 171 EATLEELEENGQIAFRY-VD-EEGNPA--QEYPRNPNGSVNNIAGICSPDGRVLGLMPHPERAFEPWQWPHWPREKWQES 246 (259)
T ss_dssp HHHHHHHCCTTEEEEEE-CS-TTSSB----STTTSSS--GGGEEEEE-TTSSEEEESSBCCGTTCCCCSS-S--TT--B-
T ss_pred HHHHHHHHhcCeEEEEE-ec-CCCCcc--cCCCCCCCCCccceeEEEcCCCCEEEEcCChHHhCchhhcCCCCccccCCC
Confidence 35677777766533333 22 111110 000125542 3599999999999999999998732 2 3
Q ss_pred CHHHHHHHHHHH
Q psy1128 233 DLELLFDIFINA 244 (337)
Q Consensus 233 d~~~lF~~Fi~~ 244 (337)
++..+|++-+++
T Consensus 247 ~~~~~F~n~~~w 258 (259)
T PF13507_consen 247 PWLRIFQNAVEW 258 (259)
T ss_dssp TTHHHHHHHHH-
T ss_pred hHHHHHHHHhhc
Confidence 456688877665
No 123
>PRK08734 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=24.33 E-value=57 Score=31.50 Aligned_cols=84 Identities=13% Similarity=0.224 Sum_probs=49.5
Q ss_pred cccCccccCeEeeecccceeeecCCCCCcccccccccccccCceEEEEEecccCCCCCCcCCcCCHHHHHH----HCCCC
Q psy1128 15 AMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLIVGDMCDTPSHWNSASTLGEWLR----AHNIP 90 (337)
Q Consensus 15 ~lTDPSy~gQiv~~TyP~IGNyGi~~~d~~~~~~~~~~ES~~~~~~g~iv~e~~~~~s~~~~~~sl~~~L~----~~~ip 90 (337)
.|.+-.=.||=+++..+|+||+-+-.. ..... .. -++|.|..- ..-++++++ +.|+.
T Consensus 104 ~l~~~~~~gkgvI~lt~H~GnwE~~~~---------~~~~~-~~-~~~vyr~~~--------n~~~d~~~~~~R~~~g~~ 164 (305)
T PRK08734 104 LYDAALASGRGVIVAAPHFGNWELLNQ---------WLSER-GP-IAIVYRPPE--------SEAVDGFLQLVRGGDNVR 164 (305)
T ss_pred HHHHHHHcCCCEEEEccccchHHHHHH---------HHHcc-CC-ceEEEeCCC--------CHHHHHHHHHHhccCCCe
Confidence 344433357888999999999976542 11111 22 245666652 344666655 34444
Q ss_pred eEe-c-cchHHHHHHHHhcCceeEEEEeCC
Q psy1128 91 ALA-N-VDTRRLTKHIRECGVVSGKIVHGS 118 (337)
Q Consensus 91 gi~-g-vDTRaLt~~iR~~G~~~g~i~~~~ 118 (337)
-|. + =.+|+|.+.||+.| ..|++.+.+
T Consensus 165 ~i~~~~~~~r~li~~Lk~g~-~v~~l~Dq~ 193 (305)
T PRK08734 165 QVRAEGPAVRQLFKVLKDGG-AVGILPDQQ 193 (305)
T ss_pred eecCCchhHHHHHHHHhcCC-eEEEeCCCC
Confidence 452 2 13799999999665 667775543
No 124
>PF00196 GerE: Bacterial regulatory proteins, luxR family; InterPro: IPR000792 This domain is a DNA-binding, helix-turn-helix (HTH) domain of about 65 amino acids, present in transcription regulators of the LuxR/FixJ family of response regulators. The domain is named after Vibrio fischeri luxR, a transcriptional activator for quorum-sensing control of luminescence. LuxR-type HTH domain proteins occur in a variety of organisms. The DNA-binding HTH domain is usually located in the C-terminal region; the N-terminal region often containing an autoinducer-binding domain or a response regulatory domain. Most luxR-type regulators act as transcription activators, but some can be repressors or have a dual role for different sites. LuxR-type HTH regulators control a wide variety of activities in various biological processes. The luxR-type, DNA-binding HTH domain forms a four-helical bundle structure. The HTH motif comprises the second and third helices, known as the scaffold and recognition helix, respectively. The HTH binds DNA in the major groove, where the N-terminal part of the recognition helix makes most of the DNA contacts. The fourth helix is involved in dimerisation of gerE and traR. Signalling events by one of the four activation mechanisms described below lead to multimerisation of the regulator. The regulators bind DNA as multimers [, , ]. LuxR-type HTH proteins can be activated by one of four different mechanisms: 1) Regulators which belong to a two-component sensory transduction system where the protein is activated by its phosphorylation, generally on an aspartate residue, by a transmembrane kinase [, ]. Some proteins that belong to this category are: Rhizobiaceae fixJ (global regulator inducing expression of nitrogen-fixation genes in microaerobiosis) Escherichia coli and Salmonella typhimurium uhpA (activates hexose phosphate transport gene uhpT) E. coli narL and narP (activate nitrate reductase operon) Enterobacteria rcsB (regulation of exopolysaccharide biosynthesis in enteric and plant pathogenesis) Bordetella pertussis bvgA (virulence factor) Bacillus subtilis coma (involved in expression of late-expressing competence genes) 2) Regulators which are activated, or in very rare cases repressed, when bound to N-acyl homoserine lactones, which are used as quorum sensing molecules in a variety of Gram-negative bacteria []: V. fischeri luxR (activates bioluminescence operon) Agrobacterium tumefaciens traR (regulation of Ti plasmid transfer) Erwinia carotovora carR (control of carbapenem antibiotics biosynthesis) E. carotovora expR (virulence factor for soft rot disease; activates plant tissue macerating enzyme genes) Pseudomonas aeruginosa lasR (activates elastase gene lasB) Erwinia chrysanthemi echR and Erwinia stewartii esaR Pseudomonas chlororaphis phzR (positive regulator of phenazine antibiotic production) Pseudomonas aeruginosa rhlR (activates rhlAB operon and lasB gene) 3) Autonomous effector domain regulators, without a regulatory domain, represented by gerE []. B. subtilis gerE (transcription activator and repressor for the regulation of spore formation) 4) Multiple ligand-binding regulators, exemplified by malT []. E. coli malT (activates maltose operon; MalT binds ATP and maltotriose); GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3SZT_A 3CLO_A 1H0M_A 1L3L_A 3C57_B 1ZLK_B 1ZLJ_H 3C3W_B 1RNL_A 1ZG1_A ....
Probab=24.04 E-value=70 Score=22.81 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=19.1
Q ss_pred CCccHHHHHHHcCCCChhHHHHHHHh
Q psy1128 266 VPKDEALIAKSFQTPKKTSVRKMRED 291 (337)
Q Consensus 266 ~~~sD~~IA~l~~~~~e~~Vr~~R~~ 291 (337)
.+.+..+||..++++ +..|+..+..
T Consensus 17 ~G~~~~eIA~~l~is-~~tV~~~~~~ 41 (58)
T PF00196_consen 17 QGMSNKEIAEELGIS-EKTVKSHRRR 41 (58)
T ss_dssp TTS-HHHHHHHHTSH-HHHHHHHHHH
T ss_pred hcCCcchhHHhcCcc-hhhHHHHHHH
Confidence 566999999999998 8887765543
No 125
>PRK08005 epimerase; Validated
Probab=23.64 E-value=3.9e+02 Score=24.78 Aligned_cols=80 Identities=20% Similarity=0.236 Sum_probs=48.2
Q ss_pred chHHHHHHHHhcCceeEEEEeCCCCChhhhhhhcccCCCCcCCccceeeecc-----eE------------EeCCCCCee
Q psy1128 96 DTRRLTKHIRECGVVSGKIVHGSVAPLAVTVEDLVFVDPNRGNLVDQVSTKE-----VV------------TYNPTGSVH 158 (337)
Q Consensus 96 DTRaLt~~iR~~G~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~VS~~~-----~~------------~~~~~~~~~ 158 (337)
+.-++.++||+.|..-|+...-.+ +.+.+...+.. .|+|--.|..- ++ .+.++ .
T Consensus 94 ~~~~~l~~Ik~~G~k~GlAlnP~T-p~~~i~~~l~~-----vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~---~ 164 (210)
T PRK08005 94 NPSEILADIRAIGAKAGLALNPAT-PLLPYRYLALQ-----LDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPA---A 164 (210)
T ss_pred CHHHHHHHHHHcCCcEEEEECCCC-CHHHHHHHHHh-----cCEEEEEEecCCCccceecHHHHHHHHHHHHhccc---C
Confidence 455677889999988777655444 44443221121 22333333210 00 00111 1
Q ss_pred EEEEecCCcchHHHHHHHCCCEEEEe
Q psy1128 159 LCVVDCGLKYNQLRCLIQRGAKLSVI 184 (337)
Q Consensus 159 I~viDfGiK~~ilr~L~~~G~~v~vv 184 (337)
-+-+|=|+..+-++.|.+.|+++.|+
T Consensus 165 ~I~VDGGI~~~~i~~l~~aGad~~V~ 190 (210)
T PRK08005 165 ECWADGGITLRAARLLAAAGAQHLVI 190 (210)
T ss_pred CEEEECCCCHHHHHHHHHCCCCEEEE
Confidence 37899999999999999999998887
No 126
>TIGR02207 lipid_A_htrB lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. This model represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of E. coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis.
Probab=22.82 E-value=55 Score=31.38 Aligned_cols=83 Identities=6% Similarity=-0.126 Sum_probs=48.5
Q ss_pred cccCccccCeEeeecccceeeecCCCCCcccccccccccccCceEEEEEecccCCCCCCcCCcCCHHHHH----HHCCCC
Q psy1128 15 AMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLIVGDMCDTPSHWNSASTLGEWL----RAHNIP 90 (337)
Q Consensus 15 ~lTDPSy~gQiv~~TyP~IGNyGi~~~d~~~~~~~~~~ES~~~~~~g~iv~e~~~~~s~~~~~~sl~~~L----~~~~ip 90 (337)
.|.+---.||=+++..+|+||+-+...- + .+..+ . .+|.+..- ...++.++ .+.|+.
T Consensus 111 ~l~~a~~~gkgvI~lt~H~GnwE~~~~~-----~---~~~~~--~-~~vyr~~~--------n~~~d~l~~~~R~~~g~~ 171 (303)
T TIGR02207 111 HLQRAQKQGRGVLLVGVHFLTLELGARI-----F---GQQQP--G-IGVYRPHN--------NPLFDWIQTRGRLRSNKA 171 (303)
T ss_pred HHHHHHhcCCCEEEEecchhHHHHHHHH-----H---HccCC--C-eEEEeCCC--------CHHHHHHHHHHHHhcCCc
Confidence 3444333577788999999999775421 1 01111 1 34555441 22344443 445665
Q ss_pred eEeccchHHHHHHHHhcCceeEEEEeC
Q psy1128 91 ALANVDTRRLTKHIRECGVVSGKIVHG 117 (337)
Q Consensus 91 gi~gvDTRaLt~~iR~~G~~~g~i~~~ 117 (337)
-|..=+.|+|.+.||+.| +.|++.+.
T Consensus 172 ~i~~~~~r~i~~~Lk~g~-~v~il~Dq 197 (303)
T TIGR02207 172 MIDRKDLRGMIKALKNGE-RIWYAPDH 197 (303)
T ss_pred ccCcccHHHHHHHHhCCC-eEEEeCCC
Confidence 565556899999999665 55676543
No 127
>KOG3111|consensus
Probab=22.17 E-value=3.3e+02 Score=25.61 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCceeEEEEeCCCCChhhhhhhcccCCCCcCCccceeeecceEEeCC---------------CCCeeEEE-
Q psy1128 98 RRLTKHIRECGVVSGKIVHGSVAPLAVTVEDLVFVDPNRGNLVDQVSTKEVVTYNP---------------TGSVHLCV- 161 (337)
Q Consensus 98 RaLt~~iR~~G~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~VS~~~~~~~~~---------------~~~~~I~v- 161 (337)
-.|+++||+.|...|+-..-.+ +.+.+..+++. .|+|--.|. +|= +++ +.-++..+
T Consensus 102 ~~lv~~ir~~Gmk~G~alkPgT-~Ve~~~~~~~~-----~D~vLvMtV-ePG-FGGQkFme~mm~KV~~lR~kyp~l~ie 173 (224)
T KOG3111|consen 102 AELVEKIREKGMKVGLALKPGT-PVEDLEPLAEH-----VDMVLVMTV-EPG-FGGQKFMEDMMPKVEWLREKYPNLDIE 173 (224)
T ss_pred HHHHHHHHHcCCeeeEEeCCCC-cHHHHHHhhcc-----ccEEEEEEe-cCC-CchhhhHHHHHHHHHHHHHhCCCceEE
Confidence 6699999999988887655444 55543322222 222222222 211 000 01123333
Q ss_pred EecCCcchHHHHHHHCCCEEEEe
Q psy1128 162 VDCGLKYNQLRCLIQRGAKLSVI 184 (337)
Q Consensus 162 iDfGiK~~ilr~L~~~G~~v~vv 184 (337)
+|=|+--+-+..-.+.|++.+|.
T Consensus 174 vDGGv~~~ti~~~a~AGAN~iVa 196 (224)
T KOG3111|consen 174 VDGGVGPSTIDKAAEAGANMIVA 196 (224)
T ss_pred ecCCcCcchHHHHHHcCCCEEEe
Confidence 77777776666667778777765
No 128
>KOG0292|consensus
Probab=22.01 E-value=2.9e+02 Score=31.56 Aligned_cols=132 Identities=17% Similarity=0.151 Sum_probs=73.8
Q ss_pred cccccCceEEEEEecccCCCCC-CcCCcCCHHHHHHHCCCCeEeccchHHHHHHH---HhcCceeEEEEeCCCCChhhhh
Q psy1128 51 YFESHRIWISGLIVGDMCDTPS-HWNSASTLGEWLRAHNIPALANVDTRRLTKHI---RECGVVSGKIVHGSVAPLAVTV 126 (337)
Q Consensus 51 ~~ES~~~~~~g~iv~e~~~~~s-~~~~~~sl~~~L~~~~ipgi~gvDTRaLt~~i---R~~G~~~g~i~~~~~~~~~~~~ 126 (337)
-|||....++|+=.+ |+ .|- -.+|. .|+ |.=+|=|.=|-.= -..|..||+.....
T Consensus 4 kfEskSsRvKglsFH-----P~rPwI-LtslH-----sG~--IQlWDYRM~tli~rFdeHdGpVRgv~FH~~-------- 62 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFH-----PKRPWI-LTSLH-----SGV--IQLWDYRMGTLIDRFDEHDGPVRGVDFHPT-------- 62 (1202)
T ss_pred hhhcccccccceecC-----CCCCEE-EEeec-----Cce--eeeehhhhhhHHhhhhccCCccceeeecCC--------
Confidence 478888888876544 43 232 11111 222 4555667644332 34577777765422
Q ss_pred hhcccCCCCcCCccceeeecceEEeCCCCCeeEEEEecCCcchHHHHHHHCCCEEEEecCCCCC----CCCCc--eeeEE
Q psy1128 127 EDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKLSVIPWNHPI----KVPQG--WQPLF 200 (337)
Q Consensus 127 ~~~~~~~~~~~~lv~~VS~~~~~~~~~~~~~~I~viDfGiK~~ilr~L~~~G~~v~vvP~~~~~----sL~~~--l~vt~ 200 (337)
.|....++.+++|-|+.+-.++=+-+.|.+.++ |-.+-+|+.. |-.++ +.|+-
T Consensus 63 --------------------qplFVSGGDDykIkVWnYk~rrclftL~GHlDY-VRt~~FHheyPWIlSASDDQTIrIWN 121 (1202)
T KOG0292|consen 63 --------------------QPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDY-VRTVFFHHEYPWILSASDDQTIRIWN 121 (1202)
T ss_pred --------------------CCeEEecCCccEEEEEecccceehhhhccccce-eEEeeccCCCceEEEccCCCeEEEEe
Confidence 233334456789999999888877777666655 3333233222 22233 44444
Q ss_pred EeCCCCceEEEeecCCcEEEEccCC
Q psy1128 201 TNANDGTNEGIVHESLPFFSVQFHP 225 (337)
Q Consensus 201 ~n~nDgtvEGi~h~~~pi~gVQfHP 225 (337)
+- +-+.|.-+..-.+=++.-||||
T Consensus 122 wq-sr~~iavltGHnHYVMcAqFhp 145 (1202)
T KOG0292|consen 122 WQ-SRKCIAVLTGHNHYVMCAQFHP 145 (1202)
T ss_pred cc-CCceEEEEecCceEEEeeccCC
Confidence 42 2334555555566688999999
No 129
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=21.96 E-value=5.3e+02 Score=24.31 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=24.2
Q ss_pred eEEEEecCCcchHHHHHHHCCCEEEEe
Q psy1128 158 HLCVVDCGLKYNQLRCLIQRGAKLSVI 184 (337)
Q Consensus 158 ~I~viDfGiK~~ilr~L~~~G~~v~vv 184 (337)
..+-+|=|+..+-++.+.+.|+++.|.
T Consensus 180 ~~IeVDGGI~~~ti~~l~~aGaD~~V~ 206 (228)
T PRK08091 180 KLISIDGSMTLELASYLKQHQIDWVVS 206 (228)
T ss_pred ceEEEECCCCHHHHHHHHHCCCCEEEE
Confidence 458899999999999999999999877
No 130
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.87 E-value=1.2e+02 Score=20.25 Aligned_cols=26 Identities=12% Similarity=0.011 Sum_probs=20.9
Q ss_pred cHHHHHHHcCCCChhHHHHHHHhCCCc
Q psy1128 269 DEALIAKSFQTPKKTSVRKMREDNGIR 295 (337)
Q Consensus 269 sD~~IA~l~~~~~e~~Vr~~R~~~~I~ 295 (337)
+-.++|+++|++ ...||...++-.|.
T Consensus 2 ~~~e~a~~~gv~-~~tlr~~~~~g~l~ 27 (49)
T cd04761 2 TIGELAKLTGVS-PSTLRYYERIGLLS 27 (49)
T ss_pred cHHHHHHHHCcC-HHHHHHHHHCCCCC
Confidence 557899999998 99999887665444
No 131
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=21.78 E-value=1.2e+02 Score=20.90 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=20.2
Q ss_pred CCccHHHHHHHcCCCChhHHHHHHHh
Q psy1128 266 VPKDEALIAKSFQTPKKTSVRKMRED 291 (337)
Q Consensus 266 ~~~sD~~IA~l~~~~~e~~Vr~~R~~ 291 (337)
...|..+||..+|++ ...|++....
T Consensus 19 ~~~t~~eIa~~lg~s-~~~V~~~~~~ 43 (50)
T PF04545_consen 19 EGLTLEEIAERLGIS-RSTVRRILKR 43 (50)
T ss_dssp ST-SHHHHHHHHTSC-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCc-HHHHHHHHHH
Confidence 345889999999998 9999887654
No 132
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=21.71 E-value=1.1e+02 Score=32.76 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=31.6
Q ss_pred eeEEEEecCCcc-hHHHHHHHCCCEEEEecCCCCC-CCCC
Q psy1128 157 VHLCVVDCGLKY-NQLRCLIQRGAKLSVIPWNHPI-KVPQ 194 (337)
Q Consensus 157 ~~I~viDfGiK~-~ilr~L~~~G~~v~vvP~~~~~-sL~~ 194 (337)
.-|+.+|||+.. ..++.+.++|++|+|.-||.+. .+|+
T Consensus 129 ~LiItvD~Gi~~~e~i~~a~~~gidvIVtDHH~~~~~~P~ 168 (575)
T PRK11070 129 QLIVTVDNGISSHAGVAHAHALGIPVLVTDHHLPGETLPA 168 (575)
T ss_pred CEEEEEcCCcCCHHHHHHHHHCCCCEEEECCCCCCCCCCC
Confidence 369999999998 6888889999999999888665 4554
No 133
>PF11198 DUF2857: Protein of unknown function (DUF2857); InterPro: IPR021364 This is a bacterial family of uncharacterised proteins.
Probab=20.96 E-value=93 Score=28.11 Aligned_cols=66 Identities=15% Similarity=0.259 Sum_probs=44.3
Q ss_pred CCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHhccCCCCCCCccccccccC--CCccHHHHHHHcCCCChhHHHHHHHhC
Q psy1128 215 SLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSKTRTPVPPIRKTIYDTL--VPKDEALIAKSFQTPKKTSVRKMREDN 292 (337)
Q Consensus 215 ~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~~k~~~~~~~v~~~l~~~~--~~~sD~~IA~l~~~~~e~~Vr~~R~~~ 292 (337)
.-++++|++|++ .|..-++.++...+. ..+.+++ .+=|-.++.+++|++ ..+|..+|+-+
T Consensus 50 ~v~~~~i~in~~----------~l~~~L~~~~~~~~~-------~~~idr~L~lGAS~~mm~~~FGls-~~ev~~rR~ll 111 (180)
T PF11198_consen 50 SVSFVSISINHD----------VLWRLLEQARREQQE-------QQLIDRALRLGASIEMMQRLFGLS-SAEVAARRRLL 111 (180)
T ss_pred CcceeeeeeCHH----------HHHHHHHHHHHHHHH-------HHHHHHHHHcCCCHHHHHHHHCCC-HHHHHHHHHHh
Confidence 345678888875 445555555433322 2222222 333899999999998 99999999999
Q ss_pred CCceee
Q psy1128 293 GIRPYN 298 (337)
Q Consensus 293 ~I~p~y 298 (337)
||.+..
T Consensus 112 gi~~~~ 117 (180)
T PF11198_consen 112 GIPVRK 117 (180)
T ss_pred CCCCCC
Confidence 998653
No 134
>PHA02591 hypothetical protein; Provisional
Probab=20.78 E-value=1e+02 Score=24.71 Aligned_cols=24 Identities=21% Similarity=0.077 Sum_probs=20.1
Q ss_pred CCccHHHHHHHcCCCChhHHHHHHH
Q psy1128 266 VPKDEALIAKSFQTPKKTSVRKMRE 290 (337)
Q Consensus 266 ~~~sD~~IA~l~~~~~e~~Vr~~R~ 290 (337)
-++|-.+||+++|++ .+.|+++-+
T Consensus 58 qGlSqeqIA~~LGVs-qetVrKYL~ 81 (83)
T PHA02591 58 KGFTVEKIASLLGVS-VRKVRRYLE 81 (83)
T ss_pred cCCCHHHHHHHhCCC-HHHHHHHHh
Confidence 355899999999998 999998654
No 135
>cd06170 LuxR_C_like C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental
Probab=20.68 E-value=1.3e+02 Score=20.27 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=19.4
Q ss_pred CCccHHHHHHHcCCCChhHHHHHHHh
Q psy1128 266 VPKDEALIAKSFQTPKKTSVRKMRED 291 (337)
Q Consensus 266 ~~~sD~~IA~l~~~~~e~~Vr~~R~~ 291 (337)
.+.|..+||+.++++ ...|+....+
T Consensus 14 ~~~s~~eia~~l~~s-~~tv~~~~~~ 38 (57)
T cd06170 14 EGKTNKEIADILGIS-EKTVKTHLRN 38 (57)
T ss_pred cCCCHHHHHHHHCCC-HHHHHHHHHH
Confidence 345899999999998 8877766443
No 136
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=20.41 E-value=91 Score=25.10 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=22.0
Q ss_pred CCccHHHHHHHcCCCChhHHHHHHHh---CCCceeeeeec
Q psy1128 266 VPKDEALIAKSFQTPKKTSVRKMRED---NGIRPYNKQID 302 (337)
Q Consensus 266 ~~~sD~~IA~l~~~~~e~~Vr~~R~~---~~I~p~yk~VD 302 (337)
+.++|.+||..++++ ..+||+.-.. .++.-..+.=|
T Consensus 26 ~~l~de~la~~~~l~-~~~vRkiL~~L~~~~lv~~~~~~d 64 (105)
T PF02002_consen 26 GELTDEDLAKKLGLK-PKEVRKILYKLYEDGLVSYRRRKD 64 (105)
T ss_dssp --B-HHHHHHTT-S--HHHHHHHHHHHHHHSS-EEEEE--
T ss_pred CCcCHHHHHHHhCCC-HHHHHHHHHHHHHCCCeEEEEEEc
Confidence 457899999999998 8888876554 47776666655
No 137
>KOG0277|consensus
Probab=20.29 E-value=2.7e+02 Score=27.36 Aligned_cols=69 Identities=10% Similarity=0.126 Sum_probs=51.5
Q ss_pred eEEEEecCCcchHHHHHHHCCCEEEEecCCCCC-------CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCC
Q psy1128 158 HLCVVDCGLKYNQLRCLIQRGAKLSVIPWNHPI-------KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEH 227 (337)
Q Consensus 158 ~I~viDfGiK~~ilr~L~~~G~~v~vvP~~~~~-------sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa 227 (337)
.+-++|.+-+.+=|+.+.++.-+|..+-|++.- |-...++...-|. -++|+-+.-...-|++.||||-.
T Consensus 84 SLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r-~~Sv~Tf~gh~~~Iy~a~~sp~~ 159 (311)
T KOG0277|consen 84 SLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR-PNSVQTFNGHNSCIYQAAFSPHI 159 (311)
T ss_pred eEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC-CcceEeecCCccEEEEEecCCCC
Confidence 467788999999999999999999888887654 2222355555443 35777787777889999999974
Done!