Query psy1128
Match_columns 337
No_of_seqs 292 out of 2955
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 22:49:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a9x_B Carbamoyl phosphate syn 100.0 3.8E-81 1.3E-85 616.9 23.8 239 2-249 28-377 (379)
2 1s1m_A CTP synthase; CTP synth 99.9 2.9E-28 9.8E-33 249.7 -9.5 213 25-249 172-540 (545)
3 1vco_A CTP synthetase; tetrame 99.9 1.9E-25 6.7E-30 228.9 -3.4 216 25-251 183-549 (550)
4 1a9x_A Carbamoyl phosphate syn 99.8 6.1E-19 2.1E-23 193.1 8.6 73 264-337 493-566 (1073)
5 3nva_A CTP synthase; rossman f 99.6 9.6E-17 3.3E-21 163.2 -3.0 64 51-114 199-263 (535)
6 2vpi_A GMP synthase; guanine m 99.4 1.1E-12 3.7E-17 119.5 10.8 99 143-246 13-211 (218)
7 1i1q_B Anthranilate synthase c 99.4 2.3E-12 7.8E-17 114.3 12.0 53 191-246 138-190 (192)
8 2vxo_A GMP synthase [glutamine 99.3 7.7E-12 2.6E-16 131.7 10.6 86 157-245 30-214 (697)
9 3tqi_A GMP synthase [glutamine 99.3 9.9E-12 3.4E-16 126.9 10.7 56 192-249 153-208 (527)
10 4gud_A Imidazole glycerol phos 99.3 2E-12 6.8E-17 115.7 4.7 47 198-247 160-206 (211)
11 2ywb_A GMP synthase [glutamine 99.3 8.5E-12 2.9E-16 126.6 9.9 86 159-246 2-185 (503)
12 1wl8_A GMP synthase [glutamine 99.2 2.8E-11 9.6E-16 106.7 10.5 54 191-246 134-187 (189)
13 1gpm_A GMP synthetase, XMP ami 99.2 1.9E-11 6.5E-16 124.7 10.4 54 192-247 150-203 (525)
14 2a9v_A GMP synthase; structura 99.2 3.7E-11 1.3E-15 108.6 10.2 57 191-249 147-203 (212)
15 3r75_A Anthranilate/para-amino 99.2 9.1E-11 3.1E-15 122.6 11.0 90 156-249 446-637 (645)
16 3uow_A GMP synthetase; structu 99.1 3.7E-10 1.3E-14 116.1 11.1 52 195-248 181-232 (556)
17 3fij_A LIN1909 protein; 11172J 98.9 1.1E-09 3.7E-14 101.5 7.4 71 178-249 169-244 (254)
18 1qdl_B Protein (anthranilate s 98.9 3E-09 1E-13 94.4 8.0 52 191-243 142-193 (195)
19 2v4u_A CTP synthase 2; pyrimid 98.9 1.5E-09 5.2E-14 102.7 6.3 81 167-248 187-277 (289)
20 2w7t_A CTP synthetase, putativ 98.8 3E-09 1E-13 99.9 5.4 61 191-251 194-260 (273)
21 1l9x_A Gamma-glutamyl hydrolas 98.8 2E-09 6.9E-14 103.1 2.5 57 192-249 207-280 (315)
22 2ywj_A Glutamine amidotransfer 98.7 2.5E-08 8.7E-13 87.3 7.1 58 182-246 124-184 (186)
23 3d54_D Phosphoribosylformylgly 98.6 3E-08 1E-12 88.1 5.7 54 193-246 151-212 (213)
24 1gpw_B Amidotransferase HISH; 98.5 3.1E-08 1.1E-12 87.8 3.3 51 195-248 149-200 (201)
25 2nv0_A Glutamine amidotransfer 98.3 3.9E-07 1.3E-11 80.3 5.6 53 191-251 141-193 (196)
26 2ywd_A Glutamine amidotransfer 98.3 7E-07 2.4E-11 78.0 6.1 48 191-246 143-190 (191)
27 1q7r_A Predicted amidotransfer 98.2 8.2E-07 2.8E-11 80.1 5.3 51 191-249 163-213 (219)
28 2iss_D Glutamine amidotransfer 98.1 1.8E-06 6.3E-11 77.1 4.6 46 192-245 162-207 (208)
29 1o1y_A Conserved hypothetical 98.1 2.3E-06 8E-11 78.4 4.6 59 180-247 143-202 (239)
30 1ka9_H Imidazole glycerol phos 98.0 2.1E-06 7.2E-11 76.0 3.1 45 197-245 152-200 (200)
31 2abw_A PDX2 protein, glutamina 97.9 1.2E-05 4.1E-10 72.5 5.0 51 193-249 163-217 (227)
32 3l7n_A Putative uncharacterize 97.8 1.4E-05 4.7E-10 72.9 5.3 60 180-247 136-196 (236)
33 3m3p_A Glutamine amido transfe 97.6 4.3E-05 1.5E-09 70.9 4.6 57 181-245 134-191 (250)
34 1jvn_A Glutamine, bifunctional 97.3 3.6E-05 1.2E-09 78.9 0.1 48 193-244 165-214 (555)
35 2vdj_A Homoserine O-succinyltr 89.6 0.33 1.1E-05 46.0 4.9 37 191-229 204-240 (301)
36 2h2w_A Homoserine O-succinyltr 88.8 0.43 1.5E-05 45.5 5.0 48 194-247 217-264 (312)
37 2ahq_A Sigma-54, RNA polymeras 87.9 0.47 1.6E-05 36.2 3.8 34 265-299 35-73 (76)
38 1gpw_B Amidotransferase HISH; 68.2 3.9 0.00013 35.2 3.7 29 158-186 2-37 (201)
39 2ywj_A Glutamine amidotransfer 62.5 7.3 0.00025 33.0 4.3 29 158-186 2-31 (186)
40 1qdl_B Protein (anthranilate s 62.3 8.1 0.00028 33.2 4.6 29 159-187 4-34 (195)
41 1ka9_H Imidazole glycerol phos 60.3 7.6 0.00026 33.4 4.0 30 157-186 3-34 (200)
42 2iss_D Glutamine amidotransfer 53.2 12 0.00042 32.4 4.2 33 154-186 18-51 (208)
43 3ctl_A D-allulose-6-phosphate 51.9 83 0.0028 28.0 9.6 99 81-185 73-195 (231)
44 1j9i_A GPNU1 DBD;, terminase s 45.2 11 0.00039 26.8 2.2 31 268-301 3-33 (68)
45 3inp_A D-ribulose-phosphate 3- 43.2 80 0.0028 28.6 8.1 97 82-184 103-222 (246)
46 2v4u_A CTP synthase 2; pyrimid 42.3 5.4 0.00018 37.0 0.1 28 154-181 23-55 (289)
47 2nv0_A Glutamine amidotransfer 38.2 34 0.0011 29.0 4.5 30 157-186 2-32 (196)
48 3ovp_A Ribulose-phosphate 3-ep 37.6 98 0.0034 27.4 7.7 95 82-184 81-196 (228)
49 1q7r_A Predicted amidotransfer 34.3 42 0.0014 29.1 4.6 31 156-186 23-54 (219)
50 3d54_D Phosphoribosylformylgly 31.9 43 0.0015 28.5 4.2 31 157-187 3-36 (213)
51 1h1y_A D-ribulose-5-phosphate 31.7 52 0.0018 28.8 4.8 100 80-184 80-200 (228)
52 1jvn_A Glutamine, bifunctional 28.4 45 0.0015 33.7 4.2 31 157-187 5-37 (555)
53 1tqj_A Ribulose-phosphate 3-ep 27.0 1.4E+02 0.0049 26.1 6.9 98 81-184 78-200 (230)
54 1gxs_B P-(S)-hydroxymandelonit 26.7 91 0.0031 25.9 5.3 75 169-244 57-152 (158)
55 1eaq_A RUNT-related transcript 25.4 20 0.00069 29.9 0.8 37 62-114 25-61 (140)
56 3ulq_B Transcriptional regulat 24.8 25 0.00084 26.7 1.2 30 266-296 43-76 (90)
57 2jpc_A SSRB; DNA binding prote 24.0 58 0.002 21.8 2.9 23 266-289 12-34 (61)
58 4a0z_A Transcription factor FA 23.7 44 0.0015 29.0 2.8 36 266-302 25-60 (190)
59 1tc3_C Protein (TC3 transposas 22.1 84 0.0029 19.2 3.3 26 266-292 20-45 (51)
60 1jko_C HIN recombinase, DNA-in 22.0 52 0.0018 20.7 2.3 29 268-297 22-50 (52)
61 2o8x_A Probable RNA polymerase 21.1 78 0.0027 21.5 3.2 26 265-291 29-54 (70)
62 1fdq_A Fatty acid-binding prot 21.0 27 0.00094 28.5 0.8 25 76-104 12-36 (131)
63 1tqx_A D-ribulose-5-phosphate 20.9 2.5E+02 0.0087 24.8 7.3 26 159-184 175-200 (227)
64 4a1y_A Myelin P2 protein; tran 20.9 25 0.00087 28.9 0.6 25 76-104 14-38 (133)
No 1
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=100.00 E-value=3.8e-81 Score=616.87 Aligned_cols=239 Identities=36% Similarity=0.588 Sum_probs=219.2
Q ss_pred cEEEecCCCCccccccCccccCeEeeecccceeeecCCCCCcccccccccccccCceEEEEEecccCCCCCCcCCcCCHH
Q psy1128 2 RYVFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLIVGDMCDTPSHWNSASTLG 81 (337)
Q Consensus 2 EvVFnT~MtGYqE~lTDPSy~gQiv~~TyP~IGNyGi~~~d~~~~~~~~~~ES~~~~~~g~iv~e~~~~~s~~~~~~sl~ 81 (337)
|||||||||||||+||||||+|||||||||||||||||++ ++||.+||++|+||||+|..|||||+++||+
T Consensus 28 Evvf~T~mtGYqe~ltDpsy~gqi~~~t~P~iGn~Gv~~~---------d~es~~~~~~g~vv~~~~~~~s~~~~~~~l~ 98 (379)
T 1a9x_B 28 EVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDA---------DEESSQVHAQGLVIRDLPLIASNFRNTEDLS 98 (379)
T ss_dssp EEEEECCSSCHHHHHTCGGGBTEEEEECSSBCCTTCCCGG---------GCSSSSCCBSEEECSBCCSCCCCTTCCSCHH
T ss_pred EEEEeCCCCcCCccccCcccccceeEEcCCCccEEccCch---------hhccccceEEEEEEccCCCCCCcccccCCHH
Confidence 9999999999999999999999999999999999999998 4899999999999999999999999999999
Q ss_pred HHHHHCCCCeEeccchHHHHHHHHhcCceeEEEEeCCCCChhhhhhhc-ccCCCCcCCccceeeecceEEeCCCC-----
Q psy1128 82 EWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLAVTVEDL-VFVDPNRGNLVDQVSTKEVVTYNPTG----- 155 (337)
Q Consensus 82 ~~L~~~~ipgi~gvDTRaLt~~iR~~G~~~g~i~~~~~~~~~~~~~~~-~~~~~~~~~lv~~VS~~~~~~~~~~~----- 155 (337)
+||+++|||||+|||||||||+||++|+|+|+|++++..+.+++.+++ .++++++.|||++|||+++|.+.++.
T Consensus 99 ~~l~~~~i~gi~giDTR~lt~~iR~~G~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~vs~~~~~~~~~~~~~~~~ 178 (379)
T 1a9x_B 99 SYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTG 178 (379)
T ss_dssp HHHHHTTCEEEESSCHHHHHHHHHHHCCEEEEEEESSSCCHHHHHHHHHHCCCSTTCBCHHHHSCSSCEEECCCCCBTTT
T ss_pred HHHHHCCCccccCCCHHHHHHHHHhcCCeeEEEecCCCCCHHHHHHHHHhCCCccccCccceeCCCCCEEeCCCCccccc
Confidence 999999999999999999999999999999999985222444444334 68889999999999999999985432
Q ss_pred -----------CeeEEEEecCCcchHHHHHHHCCCEEEEecCCCCC----------------------------------
Q psy1128 156 -----------SVHLCVVDCGLKYNQLRCLIQRGAKLSVIPWNHPI---------------------------------- 190 (337)
Q Consensus 156 -----------~~~I~viDfGiK~~ilr~L~~~G~~v~vvP~~~~~---------------------------------- 190 (337)
+.||+++|||.|+||+|.|.++||+++|+|+++++
T Consensus 179 ~~~~~~~~~~~~~~V~viD~G~k~ni~r~L~~~G~~v~vvp~~~~~e~i~~~~~DGliLsGGPgdp~~~~~~~~~Ir~~~ 258 (379)
T 1a9x_B 179 GLPQAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFL 258 (379)
T ss_dssp BSCCCCCGGGCCEEEEEEESSCCHHHHHHHHHTTEEEEEEETTCCHHHHHTTCCSEEEECCCSBCSTTCHHHHHHHHHHT
T ss_pred ccccccccccCCCEEEEEECCChHHHHHHHHHCCCEEEEEeccCCHHHHhhcCCCEEEEeCCCCChHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999998653
Q ss_pred ------------------------------------------------------------CCCCceeeEEEeCCCCceEE
Q psy1128 191 ------------------------------------------------------------KVPQGWQPLFTNANDGTNEG 210 (337)
Q Consensus 191 ------------------------------------------------------------sL~~~l~vt~~n~nDgtvEG 210 (337)
+||+++++++++++|+++||
T Consensus 259 ~~~~PILGIClG~QLLa~A~GG~v~k~~~gh~g~n~pv~~~~~g~v~its~~H~~aV~~~~Lp~~~~v~a~s~~Dg~iea 338 (379)
T 1a9x_B 259 ETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQG 338 (379)
T ss_dssp TSCCCEEEETHHHHHHHHHTTCCEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECSTTCCTTEEEEEEETTTCCEEE
T ss_pred HcCCCEEEECchHHHHHHHhCcEEEecccccccCceeeEecCCCcEEEEecCccceEecccCCCCeEEEEEeCCCCcEEE
Confidence 38889999999999999999
Q ss_pred EeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHhcc
Q psy1128 211 IVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSK 249 (337)
Q Consensus 211 i~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~~k 249 (337)
|+|+++|+||||||||+.++|+|+.+||++|+++++++|
T Consensus 339 i~~~~~pi~gVQFHPE~~~~p~d~~~Lf~~Fl~~~~~~~ 377 (379)
T 1a9x_B 339 IHRTDKPAFSFQGNPEASPGPHDAAPLFDHFIELIEQYR 377 (379)
T ss_dssp EEESSSSEEEESSCTTCSSSCSTTTHHHHHHHHHHHHHH
T ss_pred EEECCCCEEEEEeCCcCCCCcccHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999997654
No 2
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=99.92 E-value=2.9e-28 Score=249.66 Aligned_cols=213 Identities=18% Similarity=0.162 Sum_probs=162.0
Q ss_pred EeeecccceeeecCCCCCcccccccccccccCceEEEEEecccCCCCCCcCCcCCHHHHHHHCCCCeEeccchHH-HHHH
Q psy1128 25 ILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLIVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRR-LTKH 103 (337)
Q Consensus 25 iv~~TyP~IGNyGi~~~d~~~~~~~~~~ES~~~~~~g~iv~e~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRa-Lt~~ 103 (337)
|-+...|.|+++|--...-..+ -.++.||.+||+.|+|||+.+..|||||+..+|..||++++||||.|||||+ |+++
T Consensus 172 ~h~~~~p~~~~~ge~ktkptq~-sv~~l~s~gi~pd~lv~R~~~~~~~~~r~kisL~~~v~~~~Vi~~~dvdt~y~lp~~ 250 (545)
T 1s1m_A 172 MHLTLVPYMAASGEVKTKPTQH-SVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGL 250 (545)
T ss_dssp EEEEECCEETTTTEECCHHHHH-HHHHHHTTTCCCSEEEEEESSCCCHHHHHHHHHTTCCCSSCEEEEECCSCGGGHHHH
T ss_pred EEEeCcccccCCCCcCCCCCcC-CHHHHhCCCCccCEEEEeCCCCCCchhhccCChhhCccccCceecCCCChHHHHHHH
Confidence 5567889999999766531112 2457899999999999999999999999999999999999999999999998 9999
Q ss_pred HHhcCceeEEEEeCCCCC-hhhhhhhcccCCCCcCCccceeeecceEEeCC-CCCeeEEEEecCCcchHHHHHHHCCCE-
Q psy1128 104 IRECGVVSGKIVHGSVAP-LAVTVEDLVFVDPNRGNLVDQVSTKEVVTYNP-TGSVHLCVVDCGLKYNQLRCLIQRGAK- 180 (337)
Q Consensus 104 iR~~G~~~g~i~~~~~~~-~~~~~~~~~~~~~~~~~lv~~VS~~~~~~~~~-~~~~~I~viDfGiK~~ilr~L~~~G~~- 180 (337)
||++|.|+++|...+.+. ...+. .| .++|..|+++++++..+ .| +.|+++| .+.|+++.|.++|++
T Consensus 251 lr~~G~~~~ii~~~~l~~~~~~l~---~w-----~~lv~~v~~~~~~v~i~~vG-kyv~l~D--~y~Si~~aL~~~G~~~ 319 (545)
T 1s1m_A 251 LKSQGLDDYICKRFSLNCPEANLS---EW-----EQVIFEEANPVSEVTIGMVG-KYIELPD--AYKSVIEALKHGGLKN 319 (545)
T ss_dssp HHHTTHHHHHHHHTTCCCCCCCCH---HH-----HHHHHHHHCCSEEEEEEEEE-SSCSSGG--GGHHHHHHHHHHHHHH
T ss_pred HHHcCChhhhhhhCCCCchhHHHH---HH-----HHHHHhccCCCCeEEeCCcC-CeEEEEE--HHHHHHHHHHHhCccc
Confidence 999999999986543210 01111 12 26788888776664321 22 2466777 677888888887763
Q ss_pred ---EEEecCCC------------CC--------------------------------------------------CC---
Q psy1128 181 ---LSVIPWNH------------PI--------------------------------------------------KV--- 192 (337)
Q Consensus 181 ---v~vvP~~~------------~~--------------------------------------------------sL--- 192 (337)
|.+++.+. .+ .|
T Consensus 320 ~~~V~i~~~d~e~i~~~~~~~l~~~DGIilsGGpg~~~~~g~~~~i~~a~~~~~PiLGIClG~Qll~va~Gg~v~~l~~a 399 (545)
T 1s1m_A 320 RVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENA 399 (545)
T ss_dssp TEEEEEEEEEHHHHHHHCTTTTTTCSEEEECCCCSSTTHHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHHCCTTC
T ss_pred CCeEEEccCCHHHhhhhhhhhhhcCCEEEECCCCCCccchhhHHHHHHHHHCCCcEEEECChHHHHHHHhCCceecCCCC
Confidence 34433221 00 11
Q ss_pred --------------------------------------------------------------------------------
Q psy1128 193 -------------------------------------------------------------------------------- 192 (337)
Q Consensus 193 -------------------------------------------------------------------------------- 192 (337)
T Consensus 400 ~s~E~~~~~~hpvi~l~~~w~~~~g~~~~q~~~~~~ggtmrlG~~~v~l~~~s~l~~iyg~~~v~e~h~Hry~VNs~~~~ 479 (545)
T 1s1m_A 400 NSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLK 479 (545)
T ss_dssp EETTTCSSCSCEEEECTTTCCCTTSCCC----------CCEEEEEEEEECTTCHHHHHTTSSEEEEEEEECCEECHHHHH
T ss_pred cccccCCCCCCceEEeecccccccccccccccccccCccccccceeeEeccCCHHHHhcCCceEEEecCcceEEChHHhh
Confidence
Q ss_pred ---CCceeeEEEeCCCCceEEEeecCCcEE-EEccCCCCCCCCcCHHHHHHHHHHHHHhcc
Q psy1128 193 ---PQGWQPLFTNANDGTNEGIVHESLPFF-SVQFHPEHTAGPADLELLFDIFINAVRDSK 249 (337)
Q Consensus 193 ---~~~l~vt~~n~nDgtvEGi~h~~~pi~-gVQfHPEa~pgp~d~~~lF~~Fi~~~~~~k 249 (337)
+++|++++++.+++.|||++|+++|+| |||||||+.++|.+...||++|++++.+++
T Consensus 480 ~l~~~gl~v~a~s~dg~~VEaie~~~~p~flGVQFHPE~~~~p~~g~~LF~~Fv~aa~~~~ 540 (545)
T 1s1m_A 480 QIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQ 540 (545)
T ss_dssp HHHHTTCEEEEECSSSCCEEEEECTTSSSEEEESSCGGGTCCTTTCCHHHHHHHHHHHHHH
T ss_pred hcccCCeEEEEECCCCCceEEEEeCCCCEEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 135778899876559999999999988 999999999999988899999999998655
No 3
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=99.89 E-value=1.9e-25 Score=228.93 Aligned_cols=216 Identities=16% Similarity=0.131 Sum_probs=156.4
Q ss_pred EeeecccceeeecCCCCCcccccccccccccCceEEEEEecccCCCCCCcCCcCCHHHHHHHCCCCeEeccchHH-HHHH
Q psy1128 25 ILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLIVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRR-LTKH 103 (337)
Q Consensus 25 iv~~TyP~IGNyGi~~~d~~~~~~~~~~ES~~~~~~g~iv~e~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRa-Lt~~ 103 (337)
|-+-.-|.|+++|--...-..+ -.++.||.+|++.|+|||+.+..|||||++.+|..||++++||||.|||||+ |+++
T Consensus 183 ~h~~~~p~~~~~~e~ktkptq~-sv~~lrs~gi~pd~lvvR~~~~~~~~~r~k~sL~~~v~~~~Vi~~~dvdt~y~lp~~ 261 (550)
T 1vco_A 183 LHLTLVPYLETSEEFKTKPTQH-SVATLRGVGIQPDILVLRSARPVPEEVRRKVALFTNVRPGHVFSSPTVEHLYEVPLL 261 (550)
T ss_dssp EEEEECCEETTTTEECCHHHHH-HHHHHHHTTCCCSEEEEEESSCCCHHHHHHHHHHHTCCGGGEEEEECCSCTTHHHHH
T ss_pred EEEeCeecccCCCCcCCCCcch-hHHHHhcCCCccCEEEEeCCCCCCcchhcccchhcCCCccCeeecCCCChHHHHHHH
Confidence 3445679999888765531111 2457899999999999999999999999999999999999999999999999 9999
Q ss_pred HHhcCceeEEEEeCCCCC-hhhhhhhcccCCCCc--CCccceeeecceEEeCCCCCeeEEEEecCC--cchHHHHHHHCC
Q psy1128 104 IRECGVVSGKIVHGSVAP-LAVTVEDLVFVDPNR--GNLVDQVSTKEVVTYNPTGSVHLCVVDCGL--KYNQLRCLIQRG 178 (337)
Q Consensus 104 iR~~G~~~g~i~~~~~~~-~~~~~~~~~~~~~~~--~~lv~~VS~~~~~~~~~~~~~~I~viDfGi--K~~ilr~L~~~G 178 (337)
||++|.|+++|...+.+. .+.+. .|.++.. .++...|++. + -+ +.+.++|++. .+++.+.+.++|
T Consensus 262 lr~~G~~~~v~~~~~l~~~~~~l~---~w~~~~~~~~~~~~~v~I~----i--vg-kyv~l~D~y~Sv~~aL~~~g~~~g 331 (550)
T 1vco_A 262 LEEQGLGRAVERALGLEAVIPNLS---FWQEAVRVLKHPERTVKIA----I--AG-KYVKMPDAYLSLLEALRHAGIKNR 331 (550)
T ss_dssp HHHHTHHHHHHHHTTCCCCCCCCH---HHHHHHHHHHSCSEEEEEE----E--EE-SCC---CTTHHHHHHHHHHHHHTT
T ss_pred HHHcCChhhhHhhCCCCchhHHHH---HhHHHHHhhcCCCCceEEc----c--cC-CeEEEEecHHHHHHHHHHHHHHcC
Confidence 999999999886533211 11111 2222211 1334444432 1 11 2477788873 456777777788
Q ss_pred CEEEEecCCCC-------------C--------------------------------------------------CC---
Q psy1128 179 AKLSVIPWNHP-------------I--------------------------------------------------KV--- 192 (337)
Q Consensus 179 ~~v~vvP~~~~-------------~--------------------------------------------------sL--- 192 (337)
++|.+++++.. + .+
T Consensus 332 ~~v~I~~~d~~~~~~~~~~~~L~~~DGIILpGGfGd~~~~g~i~~ir~a~e~~iPiLGICLGmQlL~~a~Gg~v~~l~~~ 411 (550)
T 1vco_A 332 ARVEVKWVDAESLEAADLEEAFRDVSGILVPGGFGVRGIEGKVRAAQYARERKIPYLGICLGLQIAVIEFARNVAGLKGA 411 (550)
T ss_dssp EEEEEEEEEGGGC--CCHHHHTTTCSCEEECCCCSSTTHHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHTSCCTTC
T ss_pred CeEEEEEeCccccccchHHHHHhcCCEEEECCCCCCcchhhhHHHHHHHHHCCCcEEEECcCHHHHHHHhCcccccCCcc
Confidence 88888755441 0 11
Q ss_pred ------------------------------------------------------------------------C-CceeeE
Q psy1128 193 ------------------------------------------------------------------------P-QGWQPL 199 (337)
Q Consensus 193 ------------------------------------------------------------------------~-~~l~vt 199 (337)
+ ++++++
T Consensus 412 ~s~E~~~~~~hpvi~~~~~q~~i~~~ggtmrlG~~~v~i~~~s~l~~iy~~~~v~e~h~H~Y~Vns~~~~~l~~~gl~v~ 491 (550)
T 1vco_A 412 NSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKPGTLLHRLYGKEEVLERHRHRYEVNPLYVDGLERAGLVVS 491 (550)
T ss_dssp EETTTCTTCSCEEEEESCGGGCC---CCCCEEEEEEEEECTTSHHHHHHCCSEEEEEEEESEEECHHHHHHHHHHTEEEE
T ss_pred ccccccCCCCCCeEEeccccccccccCCcccccceEEEEccCchhhHhcCCceeeeeccceEEEchHHhhccccCCeEEE
Confidence 0 246678
Q ss_pred EEeCC-----CCceEEEeecCCcEE-EEccCCCCCCCCcCHHHHHHHHHHHHHhccCC
Q psy1128 200 FTNAN-----DGTNEGIVHESLPFF-SVQFHPEHTAGPADLELLFDIFINAVRDSKTR 251 (337)
Q Consensus 200 ~~n~n-----DgtvEGi~h~~~pi~-gVQfHPEa~pgp~d~~~lF~~Fi~~~~~~k~~ 251 (337)
+++.+ |+.||||+|+++|+| |||||||+.++|.+...||++|++++.+++.+
T Consensus 492 a~s~dG~g~~~~~VeaIe~~~~p~fvGVQFHPE~~~~p~~g~~LF~~Fv~aa~~~~~~ 549 (550)
T 1vco_A 492 ATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRPMRPSPPFVGFVEAALAYQER 549 (550)
T ss_dssp EECCCBTTBSTTCEEEEEETTSSSEEEESSCGGGGCBTTBCCHHHHHHHHHHHHHTC-
T ss_pred EEeCCCCccCCCcEEEEEeCCCCEEEEEEeCCccCCCCCChHHHHHHHHHHHHhhccc
Confidence 88876 559999999999998 99999999999988889999999999876643
No 4
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.76 E-value=6.1e-19 Score=193.06 Aligned_cols=73 Identities=26% Similarity=0.393 Sum_probs=69.0
Q ss_pred cCCCccHHHHHHHcCCCChhHHHHHHHhCCCceeeeeeccccccCCCCCceeEeeecCCcCCCC-CCCCeEEEeC
Q psy1128 264 TLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTYNATAHDLA-VKETVSIIKG 337 (337)
Q Consensus 264 ~~~~~sD~~IA~l~~~~~e~~Vr~~R~~~~I~p~yk~VDtcAgEF~a~TpY~YSTY~~e~e~~~-~~~kkvlVlG 337 (337)
|..+|||.+||++|+.+ |.+||++|+++||.|+||+||||||||+|.||||||||+.++|..+ ++++||||||
T Consensus 493 k~~gf~d~~ia~~~~~~-~~~~~~~r~~~~~~~~~k~vd~~a~e~~~~t~y~y~~y~~~~~~~~~~~~~kVlVlG 566 (1073)
T 1a9x_A 493 KRKGFADARLAKLAGVR-EAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLG 566 (1073)
T ss_dssp HHTTCCHHHHHHHTTSC-HHHHHHHHHHTTCCCEEEECCSBTTSSCCCCEEEEEESCSCCCCCCCSSSCEEEEEC
T ss_pred HHcCCCHHHHHHHhCCC-HHHHHHHHHHcCCCceEEEeCCccccCcCCCceEEEEECCCccccccccCcEEEEec
Confidence 44678999999999998 9999999999999999999999999999999999999999988887 6889999998
No 5
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=99.56 E-value=9.6e-17 Score=163.24 Aligned_cols=64 Identities=11% Similarity=-0.041 Sum_probs=60.1
Q ss_pred cccccCceEEEEEecccCCCCCCcCCcCCHHHHHHHCCCCeEeccchHHHH-HHHHhcCceeEEE
Q psy1128 51 YFESHRIWISGLIVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLT-KHIRECGVVSGKI 114 (337)
Q Consensus 51 ~~ES~~~~~~g~iv~e~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRaLt-~~iR~~G~~~g~i 114 (337)
..+|.+|++.++|||.....|++||++.+|..|+++++|.++.+||||.+| ++||++|.+.-++
T Consensus 199 ~Lrs~GIqPdilvcRs~~~l~~~~r~KiaLfc~V~~~~VI~i~DvdtiY~vpl~L~~qGl~~~~~ 263 (535)
T 3nva_A 199 ELRRIGIQPDFIVGRATLPLDDETRRKIALFTNVKVDHIVSSYDVETSYEVPIILESQKLVSKIL 263 (535)
T ss_dssp HHHHHTCCCSEEEEEESSCCCHHHHHHHHHHTTCCGGGEEEEECCSCGGGHHHHHHHHTHHHHHH
T ss_pred HHHhCCCCCCEEEEecCCCCCHHHHHhhhhhcCCChhceEecCCCChHHHhHHHHHHCCcHHHHH
Confidence 468999999999999999999999999999999999999999999999999 9999999877544
No 6
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=99.40 E-value=1.1e-12 Score=119.51 Aligned_cols=99 Identities=20% Similarity=0.348 Sum_probs=77.2
Q ss_pred eeecceEEeCCCCCeeEEEEecCCcc--hHHHHHHHCCCEEEEecCCCCC------------------------------
Q psy1128 143 VSTKEVVTYNPTGSVHLCVVDCGLKY--NQLRCLIQRGAKLSVIPWNHPI------------------------------ 190 (337)
Q Consensus 143 VS~~~~~~~~~~~~~~I~viDfGiK~--~ilr~L~~~G~~v~vvP~~~~~------------------------------ 190 (337)
|++.+.|... . ..+|++||||.++ ++.+.|.+.|+++.++|++.+.
T Consensus 13 ~~~~~~~~~~-~-~~~I~iiD~g~~~~~~i~~~l~~~G~~~~vv~~~~~~~~l~~~~~dglil~Gg~~~~~~~~~~~~~~ 90 (218)
T 2vpi_A 13 LGTENLYFQS-M-EGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDP 90 (218)
T ss_dssp -----------C-TTCEEEEECSTTTTHHHHHHHHHTTCCEEEECTTCCHHHHHHHTCSEEEEEC---------CCCCCG
T ss_pred cccceEEEEe-c-CCeEEEEECCCchHHHHHHHHHHCCCEEEEEECCCChHHHhhcCCCEEEECCCCcccccccchhHHH
Confidence 4444444322 2 2589999999998 5899999999999999987653
Q ss_pred -------------------------------------------------------------------CCCCceeeEEEeC
Q psy1128 191 -------------------------------------------------------------------KVPQGWQPLFTNA 203 (337)
Q Consensus 191 -------------------------------------------------------------------sL~~~l~vt~~n~ 203 (337)
.||+++++++.+
T Consensus 91 ~~~~~~~PilGIC~G~Qll~~~~GG~v~~~~~~~~G~~~v~~~~~~~l~~~l~~~~~v~~~H~~~v~~l~~~~~vlA~s- 169 (218)
T 2vpi_A 91 AIFTIGKPVLGICYGMQMMNKVFGGTVHKKSVREDGVFNISVDNTCSLFRGLQKEEVVLLTHGDSVDKVADGFKVVARS- 169 (218)
T ss_dssp GGGTSSCCEEEETHHHHHHHHHTTCCEEEEEECSCEEEEEEECTTSGGGTTCCSEEEEEECSEEEESSCCTTCEEEEEE-
T ss_pred HHHHcCCCEEEEcHHHHHHHHHhCCceEeCCCCcccEEEEEEccCChhHhcCCCCcEEeehhhhHhhhcCCCCEEEEEc-
Confidence 578899999998
Q ss_pred CCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHH-HHHH
Q psy1128 204 NDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFI-NAVR 246 (337)
Q Consensus 204 nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi-~~~~ 246 (337)
|+.+||+++++.|++|||||||..+++. ...||++|+ +.++
T Consensus 170 -~~~i~ai~~~~~~i~gvQfHPE~~~~~~-g~~l~~~F~~~~~~ 211 (218)
T 2vpi_A 170 -GNIVAGIANESKKLYGAQFHPEVGLTEN-GKVILKNFLYDIAG 211 (218)
T ss_dssp -TTEEEEEEETTTTEEEESSCTTSTTSTT-HHHHHHHHHTTTTC
T ss_pred -CCeEEEEEECCCCEEEEEcCCCCCCChh-HHHHHHHHHHHHhC
Confidence 6799999999999999999999998766 468999999 6654
No 7
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=99.39 E-value=2.3e-12 Score=114.25 Aligned_cols=53 Identities=21% Similarity=0.266 Sum_probs=46.1
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHH
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVR 246 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~ 246 (337)
.+|+++++++. +|+.+|+++|++.|++|||||||.++++.+. .+|++|+++++
T Consensus 138 ~lp~~~~v~a~--~~~~~~ai~~~~~~~~gvQfHPE~~~~~~g~-~il~nf~~~~~ 190 (192)
T 1i1q_B 138 NVPAGLTINAH--FNGMVMAVRHDADRVCGFQFHPESILTTQGA-RLLEQTLAWAQ 190 (192)
T ss_dssp CCCTTCEEEEE--ETTEEEEEEETTTTEEEESSBTTSTTCTTHH-HHHHHHHHHHT
T ss_pred hCCCccEEEEC--CCCcEEEEEECCCCEEEEEccCcccCCcccH-HHHHHHHHHHh
Confidence 56788999884 4799999999999999999999999887665 69999999865
No 8
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.28 E-value=7.7e-12 Score=131.69 Aligned_cols=86 Identities=22% Similarity=0.416 Sum_probs=74.5
Q ss_pred eeEEEEecCCcch--HHHHHHHCCCEEEEecCCCCC--------------------------------------------
Q psy1128 157 VHLCVVDCGLKYN--QLRCLIQRGAKLSVIPWNHPI-------------------------------------------- 190 (337)
Q Consensus 157 ~~I~viDfGiK~~--ilr~L~~~G~~v~vvP~~~~~-------------------------------------------- 190 (337)
.+|+++|||.+++ |.|.|++.|+++.++|++.+.
T Consensus 30 ~~I~VLDfg~q~~~liar~lre~Gv~~~ivp~~~~~e~i~~~~~dGIILsGGp~s~~~~~~~~~~~~i~~~g~PvLGIC~ 109 (697)
T 2vxo_A 30 GAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAIFTIGKPVLGICY 109 (697)
T ss_dssp CCEEEEEEC--CHHHHHHHHHHTTCCEEEEETTCCHHHHHHHTCSEEEEEECC-------CCCCCGGGTTSSCCEEEEEH
T ss_pred CEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCCHHHHhhcCCCEEEECCCCCcccCccchhHHHHHHhCCCCEEEECH
Confidence 4899999999997 789999999999999998764
Q ss_pred -----------------------------------------------------CCCCceeeEEEeCCCCceEEEeecCCc
Q psy1128 191 -----------------------------------------------------KVPQGWQPLFTNANDGTNEGIVHESLP 217 (337)
Q Consensus 191 -----------------------------------------------------sL~~~l~vt~~n~nDgtvEGi~h~~~p 217 (337)
.||+++++++.+ |+.++|++|+++|
T Consensus 110 G~QlLa~~lGG~v~~~~~~e~G~~~v~~~~~~~Lf~~l~~~~~v~~~H~~~V~~lp~g~~vlA~s--~~~i~ai~~~~~~ 187 (697)
T 2vxo_A 110 GMQMMNKVFGGTVHKKSVREDGVFNISVDNTCSLFRGLQKEEVVLLTHGDSVDKVADGFKVVARS--GNIVAGIANESKK 187 (697)
T ss_dssp HHHHHHHHTTCCBCC-------CEEEEECTTSGGGTTCCSEEEECCCSSCCBSSCCTTCEEEEEE--TTEEEEEEETTTT
T ss_pred HHHHHHHHhCCeEeecCCCccceEEEEecCCChhhhcCCccCcceeecccceecCCCCeEEEEEe--CCceEEEEeCCCC
Confidence 578899999998 5699999999999
Q ss_pred EEEEccCCCCCCCCcCHHHHHHHHHHHH
Q psy1128 218 FFSVQFHPEHTAGPADLELLFDIFINAV 245 (337)
Q Consensus 218 i~gVQfHPEa~pgp~d~~~lF~~Fi~~~ 245 (337)
++|||||||..++|.+ ..||++|+..+
T Consensus 188 i~GvQFHPE~~~t~~g-~~ll~nFl~~i 214 (697)
T 2vxo_A 188 LYGAQFHPEVGLTENG-KVILKNFLYDI 214 (697)
T ss_dssp EEEESSCTTSSSSTTH-HHHHHHHHTTT
T ss_pred EEEEEecccCCCCccc-hhhhhhhhhcc
Confidence 9999999999998874 67999999433
No 9
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.28 E-value=9.9e-12 Score=126.91 Aligned_cols=56 Identities=21% Similarity=0.431 Sum_probs=47.7
Q ss_pred CCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHhcc
Q psy1128 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSK 249 (337)
Q Consensus 192 L~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~~k 249 (337)
||+++++++.+ .|+.++|++|+++|+||||||||..++|.+ ..||++|+..+.+.+
T Consensus 153 lp~g~~v~A~s-~~~~i~ai~~~~~~~~GvQFHPE~~~t~~G-~~ll~nF~~~i~~~~ 208 (527)
T 3tqi_A 153 LPPGFEATACT-DNSPLAAMADFKRRFFGLQFHPEVTHTPQG-HRILAHFVIHICQCI 208 (527)
T ss_dssp CCTTCEEEEEE-TTEEEEEEECSSSCEEEESBCSSSTTSTTH-HHHHHHHHHTTSCCC
T ss_pred cCCCCEEEEEe-CCCcEEEEEcCCCCEEEEEecccccccccc-chhhhhhhhhccccc
Confidence 45678899988 478999999999999999999999988765 579999998776544
No 10
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=99.27 E-value=2e-12 Score=115.69 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=34.0
Q ss_pred eEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHh
Q psy1128 198 PLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRD 247 (337)
Q Consensus 198 vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~ 247 (337)
+.+.+ +||..++..+++.|+||||||||++ + .++..||++|++++.+
T Consensus 160 ~~a~~-~~g~~~~~~v~~~~v~GvQFHPE~s-~-~~G~~ll~nFl~~~ge 206 (211)
T 4gud_A 160 TIAQC-EYGQPFSAAIQAGNYYGVQFHPERS-S-KAGARLIQNFLELRGE 206 (211)
T ss_dssp EEEEE-ESSSEEEEEEEETTEEEESSCGGGS-H-HHHHHHHHHHHHC---
T ss_pred EEEEe-cCCCeEEEEEeCCCEEEEEccCEec-C-ccHHHHHHHHHHHhcc
Confidence 34444 3577777777788999999999986 3 4456799999998653
No 11
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.27 E-value=8.5e-12 Score=126.59 Aligned_cols=86 Identities=24% Similarity=0.422 Sum_probs=76.3
Q ss_pred EEEEecCCcch--HHHHHHHCCCEEEEecCCCCC----------------------------------------------
Q psy1128 159 LCVVDCGLKYN--QLRCLIQRGAKLSVIPWNHPI---------------------------------------------- 190 (337)
Q Consensus 159 I~viDfGiK~~--ilr~L~~~G~~v~vvP~~~~~---------------------------------------------- 190 (337)
|+++|||.+++ |.|.|++.|+.+.++|++.+.
T Consensus 2 i~ilD~g~~~~~~i~r~l~~~G~~~~i~p~~~~~~~i~~~~~dgiIlsGGp~s~~~~~~~~~~~~~~~~~~PvLGIC~G~ 81 (503)
T 2ywb_A 2 VLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDAPRPDPRLFSSGLPLLGICYGM 81 (503)
T ss_dssp EEEEESSCTTHHHHHHHHHTTTCCEEEEETTCCHHHHHTTCCSEEEECCCSSCSSCTTCCCCCGGGGCSSCCEEEETHHH
T ss_pred EEEEECCCcHHHHHHHHHHHCCCEEEEEECCCCHHHHHhcCCCEEEECCCCchhccCCCcchHHHHHhCCCCEEEECHHH
Confidence 89999999995 999999999999999998654
Q ss_pred --------------------------------------------------CCCCceeeEEEeCCCCceEEEeecCCcEEE
Q psy1128 191 --------------------------------------------------KVPQGWQPLFTNANDGTNEGIVHESLPFFS 220 (337)
Q Consensus 191 --------------------------------------------------sL~~~l~vt~~n~nDgtvEGi~h~~~pi~g 220 (337)
.||+++++++.+ +|+.++|++|++.+++|
T Consensus 82 Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~l~~~~~~~~~v~~~H~~~v~~lp~g~~v~A~s-~~~~i~ai~~~~~~~~g 160 (503)
T 2ywb_A 82 QLLAQELGGRVERAGRAEYGKALLTRHEGPLFRGLEGEVQVWMSHQDAVTAPPPGWRVVAET-EENPVAAIASPDGRAYG 160 (503)
T ss_dssp HHHHHTTTCEEECC---CEEEEECSEECSGGGTTCCSCCEEEEECSCEEEECCTTCEEEEEC-SSCSCSEEECTTSSEEE
T ss_pred HHHHHHhCCeEeeCCCCccceEEEEecCcHHhhcCCCccEEEEECCCccccCCCCCEEEEEE-CCCCEEEEEeCCCCEEE
Confidence 578899999988 57999999999999999
Q ss_pred EccCCCCCCCCcCHHHHHHHHHHHHH
Q psy1128 221 VQFHPEHTAGPADLELLFDIFINAVR 246 (337)
Q Consensus 221 VQfHPEa~pgp~d~~~lF~~Fi~~~~ 246 (337)
||||||..++|. +..||++|++.+.
T Consensus 161 vQFHPE~~~~~~-g~~ll~~F~~~~~ 185 (503)
T 2ywb_A 161 VQFHPEVAHTPK-GMQILENFLELAG 185 (503)
T ss_dssp ESBCTTSTTSTT-HHHHHHHHHHHTT
T ss_pred EecCCCcccccc-cHHHHHHHHHHhh
Confidence 999999998876 5679999996654
No 12
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=99.24 E-value=2.8e-11 Score=106.68 Aligned_cols=54 Identities=28% Similarity=0.447 Sum_probs=47.5
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHH
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVR 246 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~ 246 (337)
+||+++++++.+. ||.+||+++++.|++|||||||...++ ++..+|++|++.++
T Consensus 134 ~l~~~~~vla~s~-~g~i~a~~~~~~~~~gvQfHPE~~~~~-~g~~l~~~f~~~~~ 187 (189)
T 1wl8_A 134 ELPPKFKILARSE-TCPIEAMKHEELPIYGVQFHPEVAHTE-KGEEILRNFAKLCG 187 (189)
T ss_dssp ECCTTEEEEEEES-SCSCSEEEESSSCEEEESSCTTSTTST-THHHHHHHHHHHHC
T ss_pred hCCCCcEEEEEcC-CCCEEEEEeCCceEEEEecCCCcCCCc-chHHHHHHHHHHHh
Confidence 5788999999985 799999999999999999999998765 45689999999764
No 13
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.24 E-value=1.9e-11 Score=124.70 Aligned_cols=54 Identities=20% Similarity=0.369 Sum_probs=46.4
Q ss_pred CCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHh
Q psy1128 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRD 247 (337)
Q Consensus 192 L~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~ 247 (337)
||+++++++.+ +|+.++|++|++.+++|||||||..++|. +..||++|+..+.+
T Consensus 150 lp~g~~v~A~s-~~~~i~ai~~~~~~i~gvQFHPE~~~~~~-g~~ll~nF~~~i~~ 203 (525)
T 1gpm_A 150 IPSDFITVAST-ESCPFAIMANEEKRFYGVQFHPEVTHTRQ-GMRMLERFVRDICQ 203 (525)
T ss_dssp CCTTCEEEEEC-SSCSCSEEEETTTTEEEESBCTTSTTSTT-HHHHHHHHHHTTSC
T ss_pred CCCCCEEEEEC-CCCCEEEEEECCCCEEEEecCCCCCcchh-HHHHHHHHHHhhhh
Confidence 56678889987 57899999999999999999999998876 56799999976654
No 14
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=99.22 E-value=3.7e-11 Score=108.58 Aligned_cols=57 Identities=23% Similarity=0.408 Sum_probs=49.7
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHhcc
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSK 249 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~~k 249 (337)
.||+++++++.+. |+.+||+++++.+++|||||||...++. ...||++|++.+++++
T Consensus 147 ~l~~~~~vlA~s~-d~~i~ai~~~~~~i~gvQfHPE~~~~~~-g~~l~~~F~~~~~~~~ 203 (212)
T 2a9v_A 147 NLPDDFTLAASSA-TCQVQGFYHKTRPIYATQFHPEVEHTQY-GRDIFRNFIGICASYR 203 (212)
T ss_dssp SCCTTEEEEEECS-SCSCSEEEESSSSEEEESSCTTSTTSTT-HHHHHHHHHHHHHHHH
T ss_pred hCCCCcEEEEEeC-CCCEEEEEECCCCEEEEEeCCCCCCCcc-HHHHHHHHHHHHHHhh
Confidence 6888999999984 7999999999899999999999997665 4679999999887543
No 15
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=99.16 E-value=9.1e-11 Score=122.60 Aligned_cols=90 Identities=14% Similarity=0.040 Sum_probs=77.5
Q ss_pred CeeEEEEecCCc--chHHHHHHHCCCEEEEecCCCCC-------------------------------------------
Q psy1128 156 SVHLCVVDCGLK--YNQLRCLIQRGAKLSVIPWNHPI------------------------------------------- 190 (337)
Q Consensus 156 ~~~I~viDfGiK--~~ilr~L~~~G~~v~vvP~~~~~------------------------------------------- 190 (337)
+++|+++|+|.. ++|.+.|.+.|+++.|+|++.+.
T Consensus 446 Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~~~~~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~~~~iPiL 525 (645)
T 3r75_A 446 GCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDAVDLARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEGKPFM 525 (645)
T ss_dssp TCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCCCCGGGCSEEEECCCSSCTTCTTSHHHHHHHHHHHHHHHHTCCEE
T ss_pred CCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCcccccCCCEEEECCCCCChhhhhhhhHHHHHHHHHHHHHCCCCEE
Confidence 468999999965 59999999999999999988654
Q ss_pred ---------------------------------------------------------CCCCceeeEEEeCCCCceEEEee
Q psy1128 191 ---------------------------------------------------------KVPQGWQPLFTNANDGTNEGIVH 213 (337)
Q Consensus 191 ---------------------------------------------------------sL~~~l~vt~~n~nDgtvEGi~h 213 (337)
.+|+++++++.+ +|+.||+|+|
T Consensus 526 GIClG~QlLa~alGG~V~~~~~~~~G~~~~i~~~~~~l~~~~~~~~~v~~~h~~~~~~lp~g~~v~A~s-~dg~i~Ai~~ 604 (645)
T 3r75_A 526 AVCLSHQILNAILGIPLVRREVPNQGIQVEIDLFGQRERVGFYNTYVAQTVRDEMDVDGVGTVAISRDP-RTGEVHALRG 604 (645)
T ss_dssp EETHHHHHHHHHTTCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEBCSCSEEEETTTEEEEEEECT-TTCBEEEEEE
T ss_pred EECHHHHHHHHHhCCEEEcCCCcccccceEEeeecCcceecCCCcEEEEEehhhccccCCCCeEEEEEc-CCCcEEEEEc
Confidence 377899999987 6899999999
Q ss_pred cCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHhcc
Q psy1128 214 ESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSK 249 (337)
Q Consensus 214 ~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~~k 249 (337)
++ ++|||||||+..++. +..||++|++.+...+
T Consensus 605 ~~--~~GVQFHPE~~~t~~-G~~Ll~nFl~~~~~~~ 637 (645)
T 3r75_A 605 PT--FSSMQFHAESVLTVD-GPRILGEAITHAIRRE 637 (645)
T ss_dssp TT--EEEESSBTTSTTCTT-HHHHHHHHHHHHTTTT
T ss_pred CC--EEEEEeCCeecCCcc-hHHHHHHHHHHHHhcc
Confidence 85 699999999998765 6689999999986544
No 16
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.08 E-value=3.7e-10 Score=116.11 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=42.3
Q ss_pred ceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHhc
Q psy1128 195 GWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDS 248 (337)
Q Consensus 195 ~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~~ 248 (337)
++++++.+ .|+.++|+++++.+++|||||||..+.|. +..||++|+..+.+.
T Consensus 181 g~~vlA~s-~~~~i~ai~~~~~~i~GvQFHPE~~~~~~-G~~ll~nFl~~i~g~ 232 (556)
T 3uow_A 181 NFYLVSSS-ENCLICSIYNKEYNIYGVQYHPEVYESLD-GELMFYNFAYNICKC 232 (556)
T ss_dssp TCEEEEEE-TTEEEEEEEETTTTEEEESSCTTSTTSTT-HHHHHHHHHTTTTCC
T ss_pred CcEEEEEe-CCCCEEEEEECCCCEEEEEcCCCCCcccc-chHHHHHHHHHhhcc
Confidence 34566776 46899999999999999999999998775 567999999766543
No 17
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=98.94 E-value=1.1e-09 Score=101.53 Aligned_cols=71 Identities=23% Similarity=0.356 Sum_probs=57.8
Q ss_pred CCEEEEecCCCCC--CCCCceeeEEEeCCCCceEEEeec-CCc-EEEEccCCCCCCCCc-CHHHHHHHHHHHHHhcc
Q psy1128 178 GAKLSVIPWNHPI--KVPQGWQPLFTNANDGTNEGIVHE-SLP-FFSVQFHPEHTAGPA-DLELLFDIFINAVRDSK 249 (337)
Q Consensus 178 G~~v~vvP~~~~~--sL~~~l~vt~~n~nDgtvEGi~h~-~~p-i~gVQfHPEa~pgp~-d~~~lF~~Fi~~~~~~k 249 (337)
|-.+.|.-++... .||+++++++.+. ||.|||++++ ++| ++|||||||..++|. ....||++|++.++++.
T Consensus 169 ~~~~~v~~~H~~~v~~l~~g~~v~a~s~-dg~ieai~~~~~~~~~~gvQfHPE~~~~~~~~~~~lf~~Fv~~~~~~~ 244 (254)
T 3fij_A 169 PNKKLVNSLHHQFIKKLAPSFKVTARTA-DGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESKKTM 244 (254)
T ss_dssp CTTEEECCBCSCEESSCCSSEEEEEEET-TCCEEEEEESSCSSCEEEESSCGGGTGGGCHHHHHHHHHHHHHHHSCC
T ss_pred CCcEEEEEeccchhhccCCCcEEEEEeC-CCcEEEEEecCCCCeEEEEEcCCccCCCCCchHHHHHHHHHHHHHHHH
Confidence 3345555555554 7899999999995 8999999999 998 999999999998764 44689999999987544
No 18
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=98.89 E-value=3e-09 Score=94.37 Aligned_cols=52 Identities=29% Similarity=0.337 Sum_probs=46.8
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHH
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFIN 243 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~ 243 (337)
.||+++++++.+.+||.+||++++++|++|||||||...++ +...||++|++
T Consensus 142 ~l~~~~~vla~s~~~g~i~a~~~~~~~~~gvQfHPE~~~~~-~g~~l~~~f~~ 193 (195)
T 1qdl_B 142 EVHRPLIVDAISAEDNEIMAIHHEEYPIYGVQFHPESVGTS-LGYKILYNFLN 193 (195)
T ss_dssp CCCTTEEEEEEESSSCCEEEEEESSSSEEEESSBTTSTTCT-THHHHHHHHHH
T ss_pred hCCCCcEEEEEECCCCcEEEEEeCCCCEEEEecCCCCCCCc-cHHHHHHHHHh
Confidence 78999999999856899999999999999999999999765 45689999997
No 19
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=98.88 E-value=1.5e-09 Score=102.75 Aligned_cols=81 Identities=22% Similarity=0.206 Sum_probs=61.6
Q ss_pred cchHHHHHHHCCCEEEEecC-------CCCCCCC-CceeeEEEeCCCCc-eEEEeecCCcEE-EEccCCCCCCCCcCHHH
Q psy1128 167 KYNQLRCLIQRGAKLSVIPW-------NHPIKVP-QGWQPLFTNANDGT-NEGIVHESLPFF-SVQFHPEHTAGPADLEL 236 (337)
Q Consensus 167 K~~ilr~L~~~G~~v~vvP~-------~~~~sL~-~~l~vt~~n~nDgt-vEGi~h~~~pi~-gVQfHPEa~pgp~d~~~ 236 (337)
+.+.+..+......|....+ +.-..|| +++++++.+ .||. ||||+++++|++ |||||||..++|.+...
T Consensus 187 ~~s~l~~~~~~~~~v~~~H~H~y~vn~~~v~~l~~~g~~v~A~s-~dg~~ieaie~~~~p~~lGvQfHPE~~~~~~~~~~ 265 (289)
T 2v4u_A 187 ENSILRKLYGDVPFIEERHRHRFEVNPNLIKQFEQNDLSFVGQD-VDGDRMEIIELANHPYFVGVQFHPEFSSRPMKPSP 265 (289)
T ss_dssp SCCHHHHHTTSCSEEEEEEEECEEECGGGSGGGTTSSEEEEEEE-TTSCSEEEEEESSSSCEEEESSBGGGGCBTTBCCH
T ss_pred CCCHHHHhcCCCceEEEecccccccCHHHHHhcccCCeEEEEEc-CCCCeEEEEEcCCCCeEEEEECCCCCCCCCCchHH
Confidence 34666666544455555433 2112688 899999999 4887 999999999976 99999999988877678
Q ss_pred HHHHHHHHHHhc
Q psy1128 237 LFDIFINAVRDS 248 (337)
Q Consensus 237 lF~~Fi~~~~~~ 248 (337)
||++|++.++++
T Consensus 266 lf~~Fv~~~~~~ 277 (289)
T 2v4u_A 266 PYLGLLLAATGN 277 (289)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhh
Confidence 999999998753
No 20
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=98.81 E-value=3e-09 Score=99.91 Aligned_cols=61 Identities=26% Similarity=0.347 Sum_probs=51.0
Q ss_pred CC-CCceeeEEEeCCC---C-ceEEEeecCCcEE-EEccCCCCCCCCcCHHHHHHHHHHHHHhccCC
Q psy1128 191 KV-PQGWQPLFTNAND---G-TNEGIVHESLPFF-SVQFHPEHTAGPADLELLFDIFINAVRDSKTR 251 (337)
Q Consensus 191 sL-~~~l~vt~~n~nD---g-tvEGi~h~~~pi~-gVQfHPEa~pgp~d~~~lF~~Fi~~~~~~k~~ 251 (337)
.| |+++++++++.++ | .||+|+|+++|++ |||||||.+..+.+...||++|++.++++...
T Consensus 194 ~l~~~g~~v~A~s~d~~~~g~~ieaie~~~~p~~~GvQfHPE~~~~~~~~~~l~~~Fv~~~~~~~~~ 260 (273)
T 2w7t_A 194 DLRKAGLCISAVTDPTFSSRCRVEAVENPSLRFFLAVQFHPEFISTPMDPAPTYLSFMAAAAKKDYV 260 (273)
T ss_dssp HHHHTTCEEEEESCTTCCTTCCEEEEECTTSSSEEEESSCGGGSCBTTBCCHHHHHHHHHHHTCCCC
T ss_pred hhccCCcEEEEEcCCcCCCCCeEEEEEcCCCCeEEEEeCCCCcCCCCCchHHHHHHHHHHHHHHHHh
Confidence 46 6889999998642 6 8999999999965 99999999988776678999999999865443
No 21
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=98.76 E-value=2e-09 Score=103.07 Aligned_cols=57 Identities=30% Similarity=0.440 Sum_probs=46.5
Q ss_pred CCCceeeEEEeCCCCceEEE---eecCCcEEEEccCCCCCC---C-----Cc------CHHHHHHHHHHHHHhcc
Q psy1128 192 VPQGWQPLFTNANDGTNEGI---VHESLPFFSVQFHPEHTA---G-----PA------DLELLFDIFINAVRDSK 249 (337)
Q Consensus 192 L~~~l~vt~~n~nDgtvEGi---~h~~~pi~gVQfHPEa~p---g-----p~------d~~~lF~~Fi~~~~~~k 249 (337)
||+++++++.+. ||.+|++ +|++.|++|||||||..+ + |+ ++..||++|++.+++++
T Consensus 207 l~~g~~v~A~s~-dg~ve~i~~i~~~~~~i~GVQfHPE~~~~e~~~~~~~p~s~~a~~~~~~lf~~Fv~~a~~~~ 280 (315)
T 1l9x_A 207 LKKFFNVLTTNT-DGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNN 280 (315)
T ss_dssp HHHHEEEEEEEE-SSSCEEEEEEEESSSCEEEESSCTTHHHHCCSSCTTCCCCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cCCCCEEEEEcC-CCCEEEEEEeccCCCCEEEEEeCCCCCcccccccccCCccHHHHHHHHHHHHHHHHHHHhcc
Confidence 677899999986 7987666 888889999999999864 2 44 57799999999987544
No 22
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=98.68 E-value=2.5e-08 Score=87.27 Aligned_cols=58 Identities=16% Similarity=0.334 Sum_probs=47.0
Q ss_pred EEecCCCCC--CC-CCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHH
Q psy1128 182 SVIPWNHPI--KV-PQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVR 246 (337)
Q Consensus 182 ~vvP~~~~~--sL-~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~ 246 (337)
.++-+|... ++ |+++++++.+ |+.+||+++. +++|||||||.++ ++..||++|++.++
T Consensus 124 ~~~~~H~~~v~~l~~~~~~v~a~s--d~~~~a~~~~--~~~gvQfHPE~~~---~g~~l~~~F~~~~~ 184 (186)
T 2ywj_A 124 YGVFIRAPVVDKILSDDVEVIARD--GDKIVGVKQG--KYMALSFHPELSE---DGYKVYKYFVENCV 184 (186)
T ss_dssp EEEESSCCEEEEECCTTCEEEEEE--TTEEEEEEET--TEEEESSCGGGST---THHHHHHHHHHHHT
T ss_pred EEEEEecceeeecCCCCeEEEEEE--CCEEEEEeeC--CEEEEECCCCcCC---chhHHHHHHHHHHh
Confidence 444444443 67 8899999998 7999999984 7999999999774 46789999999875
No 23
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=98.62 E-value=3e-08 Score=88.07 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=44.5
Q ss_pred CCceeeEEEeCC--C--CceEEEeecCCcEEEEccCCCCCCC----CcCHHHHHHHHHHHHH
Q psy1128 193 PQGWQPLFTNAN--D--GTNEGIVHESLPFFSVQFHPEHTAG----PADLELLFDIFINAVR 246 (337)
Q Consensus 193 ~~~l~vt~~n~n--D--gtvEGi~h~~~pi~gVQfHPEa~pg----p~d~~~lF~~Fi~~~~ 246 (337)
|+++.+++.+.+ + +.|||+++++.+++|||||||..+. +.++..||++|++.++
T Consensus 151 ~~~~~~~a~~~~~ng~~~~i~a~~~~~~~~~gvQfHPE~~~~~~~~~~~g~~l~~~f~~~~~ 212 (213)
T 3d54_D 151 DDVNVVLRYVKDVNGSDERIAGVLNESGNVFGLMPHPERAVEELIGGEDGKKVFQSILNYLK 212 (213)
T ss_dssp SCCEEEEEESSCSSCCGGGEEEEECSSSCEEEECSCSTTTTSTTTTCSTTSHHHHHHHHHCC
T ss_pred CCCcEEEEEcCCCCCCccceeEEEcCCCCEEEEeCCHHHhcCHhhhcCccHHHHHHHHHHhh
Confidence 578899888743 2 4899999988999999999999872 4666789999998863
No 24
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=98.53 E-value=3.1e-08 Score=87.77 Aligned_cols=51 Identities=24% Similarity=0.249 Sum_probs=42.7
Q ss_pred ceeeEEEeCCCC-ceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHhc
Q psy1128 195 GWQPLFTNANDG-TNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDS 248 (337)
Q Consensus 195 ~l~vt~~n~nDg-tvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~~ 248 (337)
++++++.+..+| .+|++++++ +++|||||||.. +.+...||++|++++.++
T Consensus 149 ~~~vla~s~~~g~~~~a~~~~~-~i~gvQfHPE~~--~~~~~~l~~~f~~~~~~~ 200 (201)
T 1gpw_B 149 EEHVLGTTEYDGEIFPSAVRKG-RILGFQFHPEKS--SKIGRKLLEKVIECSLSR 200 (201)
T ss_dssp GGGEEEEEEETTEEEEEEEEET-TEEEESSCGGGS--HHHHHHHHHHHHHHSSCC
T ss_pred CCEEEEEEccCCceEEEEEECC-CEEEEECCCccc--CHhHHHHHHHHHHHhhcC
Confidence 689999885336 899999987 899999999998 456678999999987654
No 25
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=98.35 E-value=3.9e-07 Score=80.28 Aligned_cols=53 Identities=21% Similarity=0.358 Sum_probs=44.4
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHhccCC
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSKTR 251 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~~k~~ 251 (337)
.+|+++++++.+ |+.+||+++ .+++|+|||||.... ..+|++|++.+++.|++
T Consensus 141 ~~~~~~~v~a~~--d~~~~a~~~--~~~~gvQfHPE~~~~----~~l~~~fl~~~~~~~~~ 193 (196)
T 2nv0_A 141 EAGENVEVLSEH--NGRIVAAKQ--GQFLGCSFHPELTED----HRVTQLFVEMVEEYKQK 193 (196)
T ss_dssp EECTTCEEEEEE--TTEEEEEEE--TTEEEESSCTTSSSC----CHHHHHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEE--CCEEEEEEE--CCEEEEEECCccCCc----hHHHHHHHHHHHhhhhh
Confidence 468899999987 799999988 489999999998743 26999999999876644
No 26
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.30 E-value=7e-07 Score=78.00 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=40.6
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHH
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVR 246 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~ 246 (337)
.+|+++++++.+ |+.+||+++. +++|+|||||..+. . .+|++|++.++
T Consensus 143 ~l~~~~~~~a~~--~~~~~a~~~~--~~~gvQfHPE~~~~---~-~l~~~f~~~~~ 190 (191)
T 2ywd_A 143 RLGEGVEVLARL--GDLPVLVRQG--KVLASSFHPELTED---P-RLHRYFLELAG 190 (191)
T ss_dssp EECTTCEEEEEE--TTEEEEEEET--TEEEESSCGGGSSC---C-HHHHHHHHHHT
T ss_pred ccCCCcEEEEEE--CCEEEEEEEC--CEEEEEeCCCCCCC---c-HHHHHHHHHhc
Confidence 478899999998 6999999986 49999999997742 2 79999998864
No 27
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=98.24 E-value=8.2e-07 Score=80.08 Aligned_cols=51 Identities=27% Similarity=0.409 Sum_probs=43.1
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHhcc
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSK 249 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~~k 249 (337)
.+|+++++++.+ |+.+||+++ .+++|||||||.... ..+|++|++.+++++
T Consensus 163 ~l~~~~~v~a~s--dg~~ea~~~--~~i~GvQfHPE~~~~----~~l~~~fl~~~~~~~ 213 (219)
T 1q7r_A 163 EAGDGVDVLATY--NDRIVAARQ--GQFLGCSFHPELTDD----HRLMQYFLNMVKEAK 213 (219)
T ss_dssp EECTTCEEEEEE--TTEEEEEEE--TTEEEESSCGGGSSC----CHHHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEc--CCEEEEEEE--CCEEEEEECcccCCC----HHHHHHHHHHHHHhh
Confidence 467899999998 799999998 489999999998742 369999999987654
No 28
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=98.11 E-value=1.8e-06 Score=77.05 Aligned_cols=46 Identities=24% Similarity=0.246 Sum_probs=39.1
Q ss_pred CCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHH
Q psy1128 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAV 245 (337)
Q Consensus 192 L~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~ 245 (337)
+|+++++++.+ |+.+||+++. +++|+|||||....+ .+|++|++.+
T Consensus 162 ~~~~~~v~a~~--d~~~~a~~~~--~i~GvQfHPE~~~~~----~l~~~fl~~~ 207 (208)
T 2iss_D 162 TGKNVEILATY--DYDPVLVKEG--NILACTFHPELTDDL----RLHRYFLEMV 207 (208)
T ss_dssp ECSSCEEEEEE--TTEEEEEEET--TEEEESSCGGGSSCC----HHHHHHHTTC
T ss_pred CCCCcEEEEEE--CCEEEEEEEC--CEEEEEeCCCcCCcH----HHHHHHHHHh
Confidence 57889999987 7999999974 799999999998643 6999999764
No 29
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=98.07 E-value=2.3e-06 Score=78.42 Aligned_cols=59 Identities=29% Similarity=0.463 Sum_probs=44.8
Q ss_pred EEEEecCCCCC-CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHh
Q psy1128 180 KLSVIPWNHPI-KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRD 247 (337)
Q Consensus 180 ~v~vvP~~~~~-sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~ 247 (337)
...++-++... .||+++++++.+ +|+.+||+++.+ ++|||||||..+ .++++|++..++
T Consensus 143 ~~~~~~~H~~~v~lp~~~~vlA~s-~~~~iea~~~~~--i~gvQfHPE~~~------~~~~~~~~~~~~ 202 (239)
T 1o1y_A 143 RLRVFQWHGDTFDLPRRATRVFTS-EKYENQGFVYGK--AVGLQFHIEVGA------RTMKRWIEAYKD 202 (239)
T ss_dssp EEEEEEEESEEECCCTTCEEEEEC-SSCSCSEEEETT--EEEESSBSSCCH------HHHHHHHHHTHH
T ss_pred CceeEeecCCccccCCCCEEEEEc-CCCCEEEEEECC--EEEEEeCccCCH------HHHHHHHHHhHH
Confidence 34444333322 789999999987 578999999985 999999999863 388999887553
No 30
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=98.02 E-value=2.1e-06 Score=76.04 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=34.3
Q ss_pred eeEEEeCCCC-ceEEEeecCCcEEEEccCCCCCCCCcCHHHHH---HHHHHHH
Q psy1128 197 QPLFTNANDG-TNEGIVHESLPFFSVQFHPEHTAGPADLELLF---DIFINAV 245 (337)
Q Consensus 197 ~vt~~n~nDg-tvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF---~~Fi~~~ 245 (337)
.+ +.+.+|| .++++++++ +++|||||||..+ .....|| ++|+++|
T Consensus 152 ~v-a~s~~~g~~~~~~~~~~-~i~gvQfHPE~~~--~~g~~l~~~~~~F~~~~ 200 (200)
T 1ka9_H 152 SL-GKGEYEGTPFTALLAKE-NLLAPQFHPEKSG--KAGLAFLALARRYFEVL 200 (200)
T ss_dssp CC-EEEEETTEEEEEEEECS-SEEEESSCTTSSH--HHHHHHHHHHHHHC---
T ss_pred cE-EEEEeCCeEEEEEEeeC-CEEEEecCCCcCc--cchhHHHHHHHHHHhhC
Confidence 56 7764336 789999887 9999999999984 5566899 9999764
No 31
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=97.85 E-value=1.2e-05 Score=72.45 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=41.5
Q ss_pred CCceeeEEEeCC----CCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHhcc
Q psy1128 193 PQGWQPLFTNAN----DGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSK 249 (337)
Q Consensus 193 ~~~l~vt~~n~n----DgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~~k 249 (337)
|+++++.+.+.. |+.+||++. .+++|+|||||.... ..||++|++.+++++
T Consensus 163 ~~~~~vla~~~~~~~g~~~~~a~~~--~~v~gvQfHPE~~~~----~~l~~~Fl~~~~~~~ 217 (227)
T 2abw_A 163 SDEVKVLATFSHESYGPNIIAAVEQ--NNCLGTVFHPELLPH----TAFQQYFYEKVKNYK 217 (227)
T ss_dssp CTTCEEEEEEEETTTEEEEEEEEEE--TTEEEESSCGGGSSC----CHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcccccCCCCceEEEEE--CCEEEEEECCeeCCC----cHHHHHHHHHHHhhh
Confidence 788999988753 789999986 479999999998743 269999999987543
No 32
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=97.84 E-value=1.4e-05 Score=72.90 Aligned_cols=60 Identities=23% Similarity=0.218 Sum_probs=46.7
Q ss_pred EEEEecCCCC-CCCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHh
Q psy1128 180 KLSVIPWNHP-IKVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRD 247 (337)
Q Consensus 180 ~v~vvP~~~~-~sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~ 247 (337)
...++-+|.. .++|+++++++.+ +|+.++++++.+ +++|||||||.. ..++++|++..+.
T Consensus 136 ~~~v~~~H~~~~~lp~~~~vla~s-~~~~~~a~~~~~-~v~gvQfHPE~~------~~~~~~~~~~~~~ 196 (236)
T 3l7n_A 136 DLLVGHWHGDMPGLPDKAQVLAIS-QGCPRQIIKFGP-KQYAFQCHLEFT------PELVAALIAQEDD 196 (236)
T ss_dssp EEEEEEEEEEECCCCTTCEEEEEC-SSCSCSEEEEET-TEEEESSBSSCC------HHHHHHHHHHCSC
T ss_pred CcEEEEecCCcccCCChheEEEEC-CCCCEEEEEECC-CEEEEEeCCCCC------HHHHHHHHHhhhh
Confidence 3444433332 3789999999998 578999999975 899999999986 4589999988653
No 33
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=97.59 E-value=4.3e-05 Score=70.89 Aligned_cols=57 Identities=18% Similarity=0.312 Sum_probs=41.9
Q ss_pred EEEecCCCCC-CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHH
Q psy1128 181 LSVIPWNHPI-KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAV 245 (337)
Q Consensus 181 v~vvP~~~~~-sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~ 245 (337)
..|+-++... +||+++++++.+. |+.++|+++++ +++|||||||..+ ....++++..
T Consensus 134 ~~v~~~H~~~v~lp~~~~vlA~s~-~~~~~a~~~~~-~~~GvQfHPE~~~------~~~~~~l~~~ 191 (250)
T 3m3p_A 134 LELFEWHYQTFSIPPGAVHILRSE-HCANQAYVLDD-LHIGFQCHIEMQA------HMVREWCSIS 191 (250)
T ss_dssp EEEEEEEEEEECCCTTEEEEEEET-TEEEEEEEETT-TEEEESSCTTCCH------HHHHHHHHHC
T ss_pred cEEEEEccceeecCCCCEEEEEeC-CCCEEEEEECC-eeEEEEeCCcCCH------HHHHHHHHhh
Confidence 4444444322 8999999999985 78999999988 5999999999863 3445555543
No 34
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=97.30 E-value=3.6e-05 Score=78.94 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=37.6
Q ss_pred CCceeeEEEeCC--CCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHH
Q psy1128 193 PQGWQPLFTNAN--DGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINA 244 (337)
Q Consensus 193 ~~~l~vt~~n~n--DgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~ 244 (337)
|+++.+++.+.. |+.+|++++ .+++|||||||.++ .....||++|++.
T Consensus 165 ~~g~~vlA~s~~~~D~~i~ai~~--~~i~GvQFHPE~s~--~~g~~l~~~Fl~~ 214 (555)
T 1jvn_A 165 ENDGWKIAKAKYGSEEFIAAVNK--NNIFATQFHPEKSG--KAGLNVIENFLKQ 214 (555)
T ss_dssp HHTTCEEEEEEETTEEEEEEEEE--TTEEEESSBGGGSH--HHHHHHHHHHHTT
T ss_pred CCCCEEEEEEcCCCCCeEEEEEe--CCEEEEEeCcEecC--hhHHHHHHHHHhc
Confidence 567788777643 578999994 58999999999762 4456899999975
No 35
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=89.56 E-value=0.33 Score=46.00 Aligned_cols=37 Identities=11% Similarity=-0.012 Sum_probs=31.2
Q ss_pred CCCCceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCC
Q psy1128 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTA 229 (337)
Q Consensus 191 sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~p 229 (337)
.+| ++++.+.|. ..-+.+++.++..+++||||||-.+
T Consensus 204 ~~p-ga~vLA~S~-~~~~~~~~~~~~~~~~vQgHpEyd~ 240 (301)
T 2vdj_A 204 EVK-ELTLLANSE-EAGVHLVIGQEGRQVFALGHSEYSC 240 (301)
T ss_dssp TCT-TEEEEEEET-TTEEEEEEEGGGTEEEECSCTTCCT
T ss_pred CCC-CCEEEEeCC-CCcceEEEecCCCEEEEECCCCCCH
Confidence 444 899999984 5778999998888999999999764
No 36
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=88.75 E-value=0.43 Score=45.52 Aligned_cols=48 Identities=17% Similarity=0.068 Sum_probs=35.1
Q ss_pred CceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHh
Q psy1128 194 QGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRD 247 (337)
Q Consensus 194 ~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~ 247 (337)
+++++.+.|. ..-+.+++.++..+++||||||-.+. .|-+.+...+.+
T Consensus 217 pga~vLA~S~-~~~~q~~~~~~~~~~~vQgHPEyd~~-----~l~~ey~rd~~~ 264 (312)
T 2h2w_A 217 PELEILAESD-EAGVYVVANKSERQIFVTGHPEYDRY-----TLRDEYYRDIGR 264 (312)
T ss_dssp C-CEEEEEET-TTEEEEEECSSSSEEEECSCTTCCTT-----HHHHHHHHHHHT
T ss_pred CCCEEEEcCC-CCcceEEEecCCCEEEEECCCCCCHH-----HHHHHHHHHHHc
Confidence 4899999984 57789999888899999999997642 344455554443
No 37
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=87.89 E-value=0.47 Score=36.24 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=24.5
Q ss_pred CCCccHHHHHHHc-----CCCChhHHHHHHHhCCCceeee
Q psy1128 265 LVPKDEALIAKSF-----QTPKKTSVRKMREDNGIRPYNK 299 (337)
Q Consensus 265 ~~~~sD~~IA~l~-----~~~~e~~Vr~~R~~~~I~p~yk 299 (337)
...+||..||.++ .++ --.|.++|+++||-++.+
T Consensus 35 ~kPlSD~~I~~~L~~~Gi~Ia-RRTVaKYRe~l~Ip~s~~ 73 (76)
T 2ahq_A 35 RKPYSDQEIANILKEKGFKVA-RRTVAKYREMLGIPSSRE 73 (76)
T ss_dssp SSCCCHHHHHHHHTTTSSCCC-HHHHHHHHHHTC------
T ss_pred CCCCCHHHHHHHHHHcCCCcc-HHHHHHHHHHcCCCchhh
Confidence 4567999999999 456 889999999999988764
No 38
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=68.23 E-value=3.9 Score=35.16 Aligned_cols=29 Identities=10% Similarity=0.227 Sum_probs=25.8
Q ss_pred eEEEEecC--CcchHHHHHHHCC-----CEEEEecC
Q psy1128 158 HLCVVDCG--LKYNQLRCLIQRG-----AKLSVIPW 186 (337)
Q Consensus 158 ~I~viDfG--iK~~ilr~L~~~G-----~~v~vvP~ 186 (337)
+|++|||| -..++.+.|.+.| +++.+++.
T Consensus 2 ~I~iid~~~g~~~s~~~~l~~~G~~~~~~~~~~~~~ 37 (201)
T 1gpw_B 2 RIGIISVGPGNIMNLYRGVKRASENFEDVSIELVES 37 (201)
T ss_dssp EEEEECCSSSCCHHHHHHHHHHSTTBSSCEEEEECS
T ss_pred EEEEEecCCchHHHHHHHHHHcCCCCCceEEEEECC
Confidence 79999999 5669999999999 99999875
No 39
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=62.52 E-value=7.3 Score=32.97 Aligned_cols=29 Identities=10% Similarity=0.073 Sum_probs=25.6
Q ss_pred eEEEEec-CCcchHHHHHHHCCCEEEEecC
Q psy1128 158 HLCVVDC-GLKYNQLRCLIQRGAKLSVIPW 186 (337)
Q Consensus 158 ~I~viDf-GiK~~ilr~L~~~G~~v~vvP~ 186 (337)
||+++|+ |...++++.|.+.|+++.++|.
T Consensus 2 ~i~vl~~~g~~~~~~~~l~~~G~~~~~~~~ 31 (186)
T 2ywj_A 2 IIGVLAIQGDVEEHEEAIKKAGYEAKKVKR 31 (186)
T ss_dssp EEEEECSSSCCHHHHHHHHHTTSEEEEECS
T ss_pred EEEEEecCcchHHHHHHHHHCCCEEEEECC
Confidence 6999998 6667899999999999999975
No 40
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=62.27 E-value=8.1 Score=33.18 Aligned_cols=29 Identities=17% Similarity=0.094 Sum_probs=25.8
Q ss_pred EEEEecCCcc--hHHHHHHHCCCEEEEecCC
Q psy1128 159 LCVVDCGLKY--NQLRCLIQRGAKLSVIPWN 187 (337)
Q Consensus 159 I~viDfGiK~--~ilr~L~~~G~~v~vvP~~ 187 (337)
|++||++..+ ++.+.|.+.|+++.++|++
T Consensus 4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~ 34 (195)
T 1qdl_B 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRND 34 (195)
T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETT
T ss_pred EEEEECCCchHHHHHHHHHhCCCEEEEEeCC
Confidence 9999999775 6889999999999999975
No 41
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=60.25 E-value=7.6 Score=33.37 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=25.8
Q ss_pred eeEEEEecC--CcchHHHHHHHCCCEEEEecC
Q psy1128 157 VHLCVVDCG--LKYNQLRCLIQRGAKLSVIPW 186 (337)
Q Consensus 157 ~~I~viDfG--iK~~ilr~L~~~G~~v~vvP~ 186 (337)
.+|+++|+| -..++.+.|.+.|+++.+++.
T Consensus 3 ~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~ 34 (200)
T 1ka9_H 3 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQD 34 (200)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHTTCEEEEESS
T ss_pred cEEEEEeCCCccHHHHHHHHHHCCCeEEEecC
Confidence 479999998 445899999999999999975
No 42
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=53.23 E-value=12 Score=32.36 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=24.9
Q ss_pred CCCeeEEEEec-CCcchHHHHHHHCCCEEEEecC
Q psy1128 154 TGSVHLCVVDC-GLKYNQLRCLIQRGAKLSVIPW 186 (337)
Q Consensus 154 ~~~~~I~viDf-GiK~~ilr~L~~~G~~v~vvP~ 186 (337)
+.+.+|+++|| |...++++.|.+.|+++.+++.
T Consensus 18 ~~~~~I~ii~~~~~~~~~~~~l~~~g~~~~~~~~ 51 (208)
T 2iss_D 18 GSHMKIGVLGVQGDVREHVEALHKLGVETLIVKL 51 (208)
T ss_dssp --CCEEEEECSSSCHHHHHHHHHHTTCEEEEECS
T ss_pred CCCcEEEEEECCCchHHHHHHHHHCCCEEEEeCC
Confidence 34568999999 4344678899999999998864
No 43
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=51.85 E-value=83 Score=28.02 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=59.3
Q ss_pred HHHHHHCCCCeEe------ccchHHHHHHHHhcCceeEEEEeCCCCChhhhhhhcccCCCCcCCccceeeec-----ceE
Q psy1128 81 GEWLRAHNIPALA------NVDTRRLTKHIRECGVVSGKIVHGSVAPLAVTVEDLVFVDPNRGNLVDQVSTK-----EVV 149 (337)
Q Consensus 81 ~~~L~~~~ipgi~------gvDTRaLt~~iR~~G~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~VS~~-----~~~ 149 (337)
-+.+.+.|.-+|+ .-+-.++.+.+|+.|...|+...-.+ +.+.+...+. ..|+|--.|.. +.+
T Consensus 73 i~~~~~aGAd~itvh~Ea~~~~~~~~i~~i~~~G~k~gv~lnp~t-p~~~~~~~l~-----~~D~VlvmsV~pGfggQ~f 146 (231)
T 3ctl_A 73 IAQLARAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPET-PVEAMKYYIH-----KADKITVMTVDPGFAGQPF 146 (231)
T ss_dssp HHHHHHHTCSEEEECGGGCTTTHHHHHHHHHHTTCEEEEEECTTC-CGGGGTTTGG-----GCSEEEEESSCTTCSSCCC
T ss_pred HHHHHHcCCCEEEECcccCCccHHHHHHHHHHcCCeEEEEEECCC-cHHHHHHHHh-----cCCEEEEeeeccCcCCccc
Confidence 3667778888885 55668899999999988887654333 4333221111 12333322221 011
Q ss_pred E------------eCC-CCCeeEEEEecCCcchHHHHHHHCCCEEEEec
Q psy1128 150 T------------YNP-TGSVHLCVVDCGLKYNQLRCLIQRGAKLSVIP 185 (337)
Q Consensus 150 ~------------~~~-~~~~~I~viDfGiK~~ilr~L~~~G~~v~vvP 185 (337)
. +.+ .+..-.+.+|.|++..-+..+.+.|+++.|+=
T Consensus 147 ~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~~~~~~~~~~aGAd~~V~G 195 (231)
T 3ctl_A 147 IPEMLDKLAELKAWREREGLEYEIEVDGSCNQATYEKLMAAGADVFIVG 195 (231)
T ss_dssp CTTHHHHHHHHHHHHHHHTCCCEEEEESCCSTTTHHHHHHHTCCEEEEC
T ss_pred cHHHHHHHHHHHHHHhccCCCceEEEECCcCHHHHHHHHHcCCCEEEEc
Confidence 0 000 01112467899999988888999999999984
No 44
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=45.24 E-value=11 Score=26.83 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=26.1
Q ss_pred ccHHHHHHHcCCCChhHHHHHHHhCCCceeeeee
Q psy1128 268 KDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQI 301 (337)
Q Consensus 268 ~sD~~IA~l~~~~~e~~Vr~~R~~~~I~p~yk~V 301 (337)
++-.++|.++|++ ...|++.+++ |+ |.++..
T Consensus 3 lt~~e~a~~LgvS-~~Tl~rw~~~-G~-P~~~~~ 33 (68)
T 1j9i_A 3 VNKKQLADIFGAS-IRTIQNWQEQ-GM-PVLRGG 33 (68)
T ss_dssp EEHHHHHHHTTCC-HHHHHHHTTT-TC-CCSSCC
T ss_pred cCHHHHHHHHCcC-HHHHHHHHHC-CC-CeEeeC
Confidence 4678899999998 9999999987 87 887653
No 45
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=43.16 E-value=80 Score=28.59 Aligned_cols=97 Identities=13% Similarity=0.105 Sum_probs=55.0
Q ss_pred HHHHHCCCCeEe-----ccchHHHHHHHHhcCceeEEEEeCCCCChhhhhhhcccCCCCcCCccceeeecceE---EeCC
Q psy1128 82 EWLRAHNIPALA-----NVDTRRLTKHIRECGVVSGKIVHGSVAPLAVTVEDLVFVDPNRGNLVDQVSTKEVV---TYNP 153 (337)
Q Consensus 82 ~~L~~~~ipgi~-----gvDTRaLt~~iR~~G~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~VS~~~~~---~~~~ 153 (337)
+.+.+.|.-.|+ .-+-.++.+.||+.|...|+...... +.+.+...+. ..|+|--.|..--+ .+.+
T Consensus 103 ~~~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gvalnp~T-p~e~l~~~l~-----~vD~VlvMsV~PGfgGQ~fi~ 176 (246)
T 3inp_A 103 ESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPAT-GIDCLKYVES-----NIDRVLIMSVNPGFGGQKFIP 176 (246)
T ss_dssp HHHHHHTCSEEEECGGGCSCHHHHHHHHHTTTSEEEEEECTTC-CSGGGTTTGG-----GCSEEEEECSCTTC--CCCCT
T ss_pred HHHHHcCCCEEEEccccchhHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHh-----cCCEEEEeeecCCCCCcccch
Confidence 445566764442 23445678889999987777654333 4443322111 12333332321000 0001
Q ss_pred --------------CCCe-eEEEEecCCcchHHHHHHHCCCEEEEe
Q psy1128 154 --------------TGSV-HLCVVDCGLKYNQLRCLIQRGAKLSVI 184 (337)
Q Consensus 154 --------------~~~~-~I~viDfGiK~~ilr~L~~~G~~v~vv 184 (337)
+.++ --+.+|.|++..-++.+.+.|+++.|+
T Consensus 177 ~~l~KI~~lr~~~~~~~~~~~I~VDGGI~~~ti~~~~~aGAD~~V~ 222 (246)
T 3inp_A 177 AMLDKAKEISKWISSTDRDILLEIDGGVNPYNIAEIAVCGVNAFVA 222 (246)
T ss_dssp THHHHHHHHHHHHHHHTSCCEEEEESSCCTTTHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCeeEEEECCcCHHHHHHHHHcCCCEEEE
Confidence 0011 236799999999899999999999987
No 46
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=42.30 E-value=5.4 Score=36.97 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=23.1
Q ss_pred CCCeeEEEE-ec-CCcc---hHHHHHHHCCCEE
Q psy1128 154 TGSVHLCVV-DC-GLKY---NQLRCLIQRGAKL 181 (337)
Q Consensus 154 ~~~~~I~vi-Df-GiK~---~ilr~L~~~G~~v 181 (337)
.++.+|++| || |.+. ++++.|.+.|+++
T Consensus 23 ~~~~~Iavv~d~~~~~~s~~si~~~L~~~G~~~ 55 (289)
T 2v4u_A 23 MKICSIALVGKYTKLRDCYASVFKALEHSALAI 55 (289)
T ss_dssp CEEEEEEEEESCSSCCGGGHHHHHHHHHHHHHT
T ss_pred CCceEEEEEecCcCCCccHHHHHHHHHHhhhhh
Confidence 334689999 99 9998 8999999887744
No 47
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=38.20 E-value=34 Score=28.96 Aligned_cols=30 Identities=13% Similarity=0.106 Sum_probs=24.2
Q ss_pred eeEEEEecCCcc-hHHHHHHHCCCEEEEecC
Q psy1128 157 VHLCVVDCGLKY-NQLRCLIQRGAKLSVIPW 186 (337)
Q Consensus 157 ~~I~viDfGiK~-~ilr~L~~~G~~v~vvP~ 186 (337)
.||+++|++..+ +.++.|.+.|+++.+++.
T Consensus 2 m~I~il~~~~~~~~~~~~l~~~g~~~~~~~~ 32 (196)
T 2nv0_A 2 LTIGVLGLQGAVREHIHAIEACGAAGLVVKR 32 (196)
T ss_dssp CEEEEECSSSCCHHHHHHHHHTTCEEEEECS
T ss_pred cEEEEEEccCCcHHHHHHHHHCCCEEEEeCC
Confidence 379999985444 677999999999998864
No 48
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=37.63 E-value=98 Score=27.40 Aligned_cols=95 Identities=15% Similarity=0.083 Sum_probs=53.8
Q ss_pred HHHHHCCCCeEe-----ccchHHHHHHHHhcCceeEEEEeCCCCChhhhhhhcccCCCCcCCccceeeecceE----EeC
Q psy1128 82 EWLRAHNIPALA-----NVDTRRLTKHIRECGVVSGKIVHGSVAPLAVTVEDLVFVDPNRGNLVDQVSTKEVV----TYN 152 (337)
Q Consensus 82 ~~L~~~~ipgi~-----gvDTRaLt~~iR~~G~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~VS~~~~~----~~~ 152 (337)
+.+.+.|.-+|+ +-+-.++.+.||+.|...|+...... +.+.+.+.+.. .|+|-..|.. |= .+.
T Consensus 81 ~~~~~aGad~itvH~Ea~~~~~~~i~~i~~~G~k~gval~p~t-~~e~l~~~l~~-----~D~Vl~msv~-pGf~Gq~f~ 153 (228)
T 3ovp_A 81 KPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGT-SVEYLAPWANQ-----IDMALVMTVE-PGFGGQKFM 153 (228)
T ss_dssp HHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTCEEEEEECTTS-CGGGTGGGGGG-----CSEEEEESSC-TTTCSCCCC
T ss_pred HHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCCEEEEEcCCC-CHHHHHHHhcc-----CCeEEEeeec-CCCCCcccC
Confidence 445557764432 22345688889999988777655443 44433222111 2333222221 10 000
Q ss_pred C------------CCCeeEEEEecCCcchHHHHHHHCCCEEEEe
Q psy1128 153 P------------TGSVHLCVVDCGLKYNQLRCLIQRGAKLSVI 184 (337)
Q Consensus 153 ~------------~~~~~I~viDfGiK~~ilr~L~~~G~~v~vv 184 (337)
+ ... .-+.+|.|+...-++.+.+.|+++.|+
T Consensus 154 ~~~l~ki~~lr~~~~~-~~I~VdGGI~~~t~~~~~~aGAd~~Vv 196 (228)
T 3ovp_A 154 EDMMPKVHWLRTQFPS-LDIEVDGGVGPDTVHKCAEAGANMIVS 196 (228)
T ss_dssp GGGHHHHHHHHHHCTT-CEEEEESSCSTTTHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHhcCC-CCEEEeCCcCHHHHHHHHHcCCCEEEE
Confidence 0 011 247899999998888999999999887
No 49
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=34.33 E-value=42 Score=29.13 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=25.3
Q ss_pred CeeEEEEecCCcc-hHHHHHHHCCCEEEEecC
Q psy1128 156 SVHLCVVDCGLKY-NQLRCLIQRGAKLSVIPW 186 (337)
Q Consensus 156 ~~~I~viDfGiK~-~ilr~L~~~G~~v~vvP~ 186 (337)
+.+|+++|+...+ +.++.|.+.|+++.++|.
T Consensus 23 ~~~I~il~~~~~~~~~~~~l~~~G~~~~~~~~ 54 (219)
T 1q7r_A 23 NMKIGVLGLQGAVREHVRAIEACGAEAVIVKK 54 (219)
T ss_dssp CCEEEEESCGGGCHHHHHHHHHTTCEEEEECS
T ss_pred CCEEEEEeCCCCcHHHHHHHHHCCCEEEEECC
Confidence 4689999996644 567899999999999875
No 50
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=31.92 E-value=43 Score=28.46 Aligned_cols=31 Identities=19% Similarity=0.166 Sum_probs=26.7
Q ss_pred eeEEEEecCCcc---hHHHHHHHCCCEEEEecCC
Q psy1128 157 VHLCVVDCGLKY---NQLRCLIQRGAKLSVIPWN 187 (337)
Q Consensus 157 ~~I~viDfGiK~---~ilr~L~~~G~~v~vvP~~ 187 (337)
++|+++|++... ++++.|.+.|+++.++|..
T Consensus 3 ~~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 36 (213)
T 3d54_D 3 PRACVVVYPGSNCDRDAYHALEINGFEPSYVGLD 36 (213)
T ss_dssp CEEEEECCTTEEEHHHHHHHHHTTTCEEEEECTT
T ss_pred cEEEEEEcCCCCccHHHHHHHHHCCCEEEEEecC
Confidence 479999998875 6789999999999999864
No 51
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=31.74 E-value=52 Score=28.79 Aligned_cols=100 Identities=17% Similarity=0.117 Sum_probs=53.3
Q ss_pred HHHHHHHCCCCeE--ecc---ch-HHHHHHHHhcCceeEEEEeCCCCChhhhhhhcccCCCCcCCccceeee-----cce
Q psy1128 80 LGEWLRAHNIPAL--ANV---DT-RRLTKHIRECGVVSGKIVHGSVAPLAVTVEDLVFVDPNRGNLVDQVST-----KEV 148 (337)
Q Consensus 80 l~~~L~~~~ipgi--~gv---DT-RaLt~~iR~~G~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~VS~-----~~~ 148 (337)
+..+++ .|.-|| .+- +. .++.+.+|+.|...|+.+.... +.+.+.+.+... ...|++--.|. ...
T Consensus 80 i~~~~~-agad~v~vH~~~~~~~~~~~~~~i~~~g~~igv~~~p~t-~~e~~~~~~~~~--~~~d~vl~~sv~pg~~g~~ 155 (228)
T 1h1y_A 80 VEPLAK-AGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGT-PVEEVFPLVEAE--NPVELVLVMTVEPGFGGQK 155 (228)
T ss_dssp HHHHHH-HTCSEEEEEGGGCTTTHHHHHHHHHHTTCEEEEEECTTS-CGGGGHHHHHSS--SCCSEEEEESSCTTCSSCC
T ss_pred HHHHHH-cCCCEEEECCCCcccHHHHHHHHHHHcCCCEEEEEeCCC-CHHHHHHHHhcC--CCCCEEEEEeecCCCCccc
Confidence 455555 788777 443 44 6679999999987775543222 333322111100 01122222221 111
Q ss_pred EEeCC----------CCCeeEEEEecCCcchHHHHHHHCCCEEEEe
Q psy1128 149 VTYNP----------TGSVHLCVVDCGLKYNQLRCLIQRGAKLSVI 184 (337)
Q Consensus 149 ~~~~~----------~~~~~I~viDfGiK~~ilr~L~~~G~~v~vv 184 (337)
+.+.. ... .-+++|+|+...-+..+.+.|+++.|+
T Consensus 156 ~~~~~l~~i~~~~~~~~~-~pi~v~GGI~~~ni~~~~~aGaD~vvv 200 (228)
T 1h1y_A 156 FMPEMMEKVRALRKKYPS-LDIEVDGGLGPSTIDVAASAGANCIVA 200 (228)
T ss_dssp CCGGGHHHHHHHHHHCTT-SEEEEESSCSTTTHHHHHHHTCCEEEE
T ss_pred CCHHHHHHHHHHHHhcCC-CCEEEECCcCHHHHHHHHHcCCCEEEE
Confidence 11000 012 246789999987777778889999887
No 52
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=28.38 E-value=45 Score=33.66 Aligned_cols=31 Identities=10% Similarity=0.066 Sum_probs=26.7
Q ss_pred eeEEEEecC--CcchHHHHHHHCCCEEEEecCC
Q psy1128 157 VHLCVVDCG--LKYNQLRCLIQRGAKLSVIPWN 187 (337)
Q Consensus 157 ~~I~viDfG--iK~~ilr~L~~~G~~v~vvP~~ 187 (337)
++|+++||| -..++++.|.+.|+++.++|..
T Consensus 5 ~~I~Iid~~~g~~~~~~~~l~~~G~~~~vv~~~ 37 (555)
T 1jvn_A 5 PVVHVIDVESGNLQSLTNAIEHLGYEVQLVKSP 37 (555)
T ss_dssp CEEEEECCSCSCCHHHHHHHHHTTCEEEEESSG
T ss_pred CEEEEEECCCCCHHHHHHHHHHCCCEEEEECCc
Confidence 479999997 5568999999999999999853
No 53
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=27.03 E-value=1.4e+02 Score=26.14 Aligned_cols=98 Identities=24% Similarity=0.219 Sum_probs=56.1
Q ss_pred HHHHHHCCCCeE--ecc-----chHHHHHHHHhcCceeEEEEeCCCCChhhhhhhcccCCCCcCCccceeeecceE---E
Q psy1128 81 GEWLRAHNIPAL--ANV-----DTRRLTKHIRECGVVSGKIVHGSVAPLAVTVEDLVFVDPNRGNLVDQVSTKEVV---T 150 (337)
Q Consensus 81 ~~~L~~~~ipgi--~gv-----DTRaLt~~iR~~G~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~VS~~~~~---~ 150 (337)
-+.+.+.|.-|| ..- .-.++.+.+|+.|...|+...-.. +.+.+.+.+. ..|++--.|...-. .
T Consensus 78 i~~~~~aGadgv~vh~e~~~~~~~~~~~~~i~~~g~~~gv~~~p~t-~~e~~~~~~~-----~~D~v~~msv~pg~ggq~ 151 (230)
T 1tqj_A 78 VEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPST-PLDFLEYVLP-----VCDLILIMSVNPGFGGQS 151 (230)
T ss_dssp HHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTC-CGGGGTTTGG-----GCSEEEEESSCC----CC
T ss_pred HHHHHHcCCCEEEECcccccchhHHHHHHHHHHcCCcEEEEEeCCC-cHHHHHHHHh-----cCCEEEEEEeccccCCcc
Confidence 366667788777 222 346788999999998888763222 3332221111 12334322221000 0
Q ss_pred eCC---------------CCCeeEEEEecCCcchHHHHHHHCCCEEEEe
Q psy1128 151 YNP---------------TGSVHLCVVDCGLKYNQLRCLIQRGAKLSVI 184 (337)
Q Consensus 151 ~~~---------------~~~~~I~viDfGiK~~ilr~L~~~G~~v~vv 184 (337)
+.+ .+...-+++|+|++..-+..+.+.|+++.|+
T Consensus 152 ~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~~~~~~~~~aGad~vvv 200 (230)
T 1tqj_A 152 FIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVA 200 (230)
T ss_dssp CCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCTTTTHHHHHHTCCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCHHHHHHHHHcCCCEEEE
Confidence 110 0101246789999998888888999999887
No 54
>1gxs_B P-(S)-hydroxymandelonitrIle lyase chain B; inhibitor complex, cyanogenesis mechanism; HET: NAG FUL DKA; 2.3A {Sorghum bicolor} SCOP: c.69.1.5
Probab=26.67 E-value=91 Score=25.88 Aligned_cols=75 Identities=20% Similarity=0.259 Sum_probs=45.5
Q ss_pred hHHHHHHHCCCEEEEecCCCCC------------CCC----CceeeEEEeCCCCceEEEeecCCcEEEEccCCCCCC---
Q psy1128 169 NQLRCLIQRGAKLSVIPWNHPI------------KVP----QGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTA--- 229 (337)
Q Consensus 169 ~ilr~L~~~G~~v~vvP~~~~~------------sL~----~~l~vt~~n~nDgtvEGi~h~~~pi~gVQfHPEa~p--- 229 (337)
.++..|.+.|.+|.|+.-+.+. +|. ..+.....+..|+.+.|....... +++-.=-.|.+
T Consensus 57 ~~~~~Ll~~girVliysGd~D~i~~~~Gt~~wi~~L~w~~~~~~~~w~~~~~~~~vaG~~~~~~n-Ltf~~V~~AGHmVP 135 (158)
T 1gxs_B 57 PVYRELIQAGLRVWVYSGDTDSVVPVSSTRRSLAALELPVKTSWYPWYMAPTEREVGGWSVQYEG-LTYVTVRGAGHLVP 135 (158)
T ss_dssp HHHHHHHHTTCEEEEEEETTCSSSCHHHHHHHHHTTCCCEEEEEEEEESSTTCCSEEEEEEEETT-EEEEEETTCCSSHH
T ss_pred HHHHHHHHcCCeEEEEecccCccCCcHHHHHHHHHCCCcccCCccceEECCCCCcccceEEEeCC-EEEEEECCCcccCc
Confidence 5788899999999999888877 332 235555432223788898554444 22211112221
Q ss_pred --CCcCHHHHHHHHHHH
Q psy1128 230 --GPADLELLFDIFINA 244 (337)
Q Consensus 230 --gp~d~~~lF~~Fi~~ 244 (337)
.|..+..+|++|+.-
T Consensus 136 ~dqP~~al~m~~~fl~g 152 (158)
T 1gxs_B 136 VHRPAQAFLLFKQFLKG 152 (158)
T ss_dssp HHCHHHHHHHHHHHHHT
T ss_pred ccCcHHHHHHHHHHHcC
Confidence 245567789998863
No 55
>1eaq_A RUNT-related transcription factor 1; transcription/DNA, acute myeloid leukemia, AML, RUNX1, RUNT domain, chloride binding, IG fold; HET: MSE; 1.25A {Mus musculus} SCOP: b.2.5.6 PDB: 1ean_A 1eao_A* 2j6w_A 1e50_A 1h9d_A* 1ljm_A 1cmo_A 1hjc_A* 1hjb_C* 1io4_C 1co1_A
Probab=25.39 E-value=20 Score=29.85 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=23.1
Q ss_pred EEecccCCCCCCcCCcCCHHHHHHHCCCCeEeccchHHHHHHHHhcCceeEEE
Q psy1128 62 LIVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKI 114 (337)
Q Consensus 62 ~iv~e~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR~~G~~~g~i 114 (337)
++|.-+ |+||||..||..- -+|..+-.|- .|++.-+-
T Consensus 25 ~~cs~L---P~HWRsNKtLP~~---FkVvalg~V~----------DGT~Vtv~ 61 (140)
T 1eaq_A 25 FLSSVL---PTHWRSNKTLPIA---FKVVALGDVP----------DGTLVTVM 61 (140)
T ss_dssp EEECCC---CSEEETTCCCSSC---CEEEESSCCC----------TTCEEEEE
T ss_pred EEEccC---cchhccCCCCCCc---eEEEEecccC----------CCCEEEEE
Confidence 344444 9999999999752 3454553332 57776443
No 56
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=24.81 E-value=25 Score=26.68 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=22.5
Q ss_pred CCccHHHHHHHcCCCChhHHHH----HHHhCCCce
Q psy1128 266 VPKDEALIAKSFQTPKKTSVRK----MREDNGIRP 296 (337)
Q Consensus 266 ~~~sD~~IA~l~~~~~e~~Vr~----~R~~~~I~p 296 (337)
.+.|.++||..+|++ +..|+. .++++|+.-
T Consensus 43 ~G~s~~eIA~~L~iS-~~TV~~~~~~i~~Klgv~~ 76 (90)
T 3ulq_B 43 KGFTNQEIADALHLS-KRSIEYSLTSIFNKLNVGS 76 (90)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHHHHHHHTTCSS
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHHHHHHHHCCCC
Confidence 677999999999998 777764 445566543
No 57
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=23.99 E-value=58 Score=21.79 Aligned_cols=23 Identities=13% Similarity=0.093 Sum_probs=18.2
Q ss_pred CCccHHHHHHHcCCCChhHHHHHH
Q psy1128 266 VPKDEALIAKSFQTPKKTSVRKMR 289 (337)
Q Consensus 266 ~~~sD~~IA~l~~~~~e~~Vr~~R 289 (337)
.+.|.++||..+|++ +..|+...
T Consensus 12 ~g~s~~eIA~~l~is-~~tV~~~~ 34 (61)
T 2jpc_A 12 EGYTNHGISEKLHIS-IKTVETHR 34 (61)
T ss_dssp TSCCSHHHHHHTCSC-HHHHHHHH
T ss_pred cCCCHHHHHHHhCCC-HHHHHHHH
Confidence 456899999999998 77776543
No 58
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=23.68 E-value=44 Score=28.99 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=29.7
Q ss_pred CCccHHHHHHHcCCCChhHHHHHHHhCCCceeeeeec
Q psy1128 266 VPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQID 302 (337)
Q Consensus 266 ~~~sD~~IA~l~~~~~e~~Vr~~R~~~~I~p~yk~VD 302 (337)
+++++..||..+++| +..||+=+.+++|.-.-+.+-
T Consensus 25 ~~~~~~~la~~~~vs-~~TiRrDl~eL~~~~l~~r~~ 60 (190)
T 4a0z_A 25 PFITDHELSDLFQVS-IQTIRLDRTYLNIPELRKRIK 60 (190)
T ss_dssp TTCCHHHHHHHHTSC-HHHHHHHHHHHTCCCHHHHHH
T ss_pred CCEeHHHHHHHHCCC-HHHHHHHHHHhcCcchhhHhh
Confidence 677999999999998 999999999998865433333
No 59
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=22.05 E-value=84 Score=19.24 Aligned_cols=26 Identities=8% Similarity=0.160 Sum_probs=21.1
Q ss_pred CCccHHHHHHHcCCCChhHHHHHHHhC
Q psy1128 266 VPKDEALIAKSFQTPKKTSVRKMREDN 292 (337)
Q Consensus 266 ~~~sD~~IA~l~~~~~e~~Vr~~R~~~ 292 (337)
.+.|-..||+.+|++ ...|+...+.+
T Consensus 20 ~g~s~~~IA~~lgis-~~Tv~~~~~~~ 45 (51)
T 1tc3_C 20 LNVSLHEMSRKISRS-RHCIRVYLKDP 45 (51)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHHCS
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHhhH
Confidence 345889999999998 99998876654
No 60
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=22.04 E-value=52 Score=20.74 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=22.1
Q ss_pred ccHHHHHHHcCCCChhHHHHHHHhCCCcee
Q psy1128 268 KDEALIAKSFQTPKKTSVRKMREDNGIRPY 297 (337)
Q Consensus 268 ~sD~~IA~l~~~~~e~~Vr~~R~~~~I~p~ 297 (337)
.|-..||+.+|++ ...|++..+++++.|.
T Consensus 22 ~s~~~ia~~lgvs-~~Tv~r~l~~~~~~~~ 50 (52)
T 1jko_C 22 HPRQQLAIIFGIG-VSTLYRYFPASSIKKR 50 (52)
T ss_dssp CCHHHHHHTTSCC-HHHHHHHSCTTC----
T ss_pred CCHHHHHHHHCCC-HHHHHHHHHHcccccc
Confidence 5788999999998 9999998888887664
No 61
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=21.11 E-value=78 Score=21.54 Aligned_cols=26 Identities=19% Similarity=0.084 Sum_probs=21.1
Q ss_pred CCCccHHHHHHHcCCCChhHHHHHHHh
Q psy1128 265 LVPKDEALIAKSFQTPKKTSVRKMRED 291 (337)
Q Consensus 265 ~~~~sD~~IA~l~~~~~e~~Vr~~R~~ 291 (337)
..+.|...||..+|++ +..|+.....
T Consensus 29 ~~g~s~~eIA~~lgis-~~tv~~~~~r 54 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCP-VGTIRSRVAR 54 (70)
T ss_dssp TSCCCHHHHHHHHTSC-HHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcC-HHHHHHHHHH
Confidence 4667999999999998 8888865544
No 62
>1fdq_A Fatty acid-binding protein, brain; omega-3, long chain poly unsaturated fatty acid, lipid binding protein; HET: HXA; 2.10A {Homo sapiens} SCOP: b.60.1.2 PDB: 1fe3_A* 1jjx_A
Probab=20.98 E-value=27 Score=28.51 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=20.9
Q ss_pred CcCCHHHHHHHCCCCeEeccchHHHHHHH
Q psy1128 76 SASTLGEWLRAHNIPALANVDTRRLTKHI 104 (337)
Q Consensus 76 ~~~sl~~~L~~~~ipgi~gvDTRaLt~~i 104 (337)
+..++++||++-||| .++|++.+.+
T Consensus 12 ~seNfdeylkalGv~----~~~rk~a~~~ 36 (131)
T 1fdq_A 12 NSQNFDEYMKALGVG----FATRQVGNVT 36 (131)
T ss_dssp EEESHHHHHHHTTCC----HHHHHHHHHC
T ss_pred cCcCHHHHHHHcCCC----HHHHHHHhcC
Confidence 466899999999996 6889988875
No 63
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=20.88 E-value=2.5e+02 Score=24.76 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=23.0
Q ss_pred EEEEecCCcchHHHHHHHCCCEEEEe
Q psy1128 159 LCVVDCGLKYNQLRCLIQRGAKLSVI 184 (337)
Q Consensus 159 I~viDfGiK~~ilr~L~~~G~~v~vv 184 (337)
-+.+|-|+...-+..+.+.|+++.|+
T Consensus 175 ~I~VdGGI~~~ti~~~~~aGAd~~V~ 200 (227)
T 1tqx_A 175 NIQVDGGLNIETTEISASHGANIIVA 200 (227)
T ss_dssp EEEEESSCCHHHHHHHHHHTCCEEEE
T ss_pred eEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 46789999999888999999999987
No 64
>4a1y_A Myelin P2 protein; transport; HET: PLM; 1.20A {Homo sapiens} PDB: 2wut_A* 4a1h_A* 1pmp_A* 1yiv_A*
Probab=20.87 E-value=25 Score=28.93 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=21.4
Q ss_pred CcCCHHHHHHHCCCCeEeccchHHHHHHH
Q psy1128 76 SASTLGEWLRAHNIPALANVDTRRLTKHI 104 (337)
Q Consensus 76 ~~~sl~~~L~~~~ipgi~gvDTRaLt~~i 104 (337)
+..++++||++-||| .++|++...+
T Consensus 14 ~sENfdeylkalGv~----~~~Rk~a~~~ 38 (133)
T 4a1y_A 14 SSENFDDYMKALGVG----LATRKLGNLA 38 (133)
T ss_dssp EEESHHHHHHHHTCC----HHHHHHHHHC
T ss_pred eccCHHHHHHHcCCC----HHHHHhHhhC
Confidence 457899999999995 7899998876
Done!