RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1128
(337 letters)
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B*
1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Length = 379
Score = 199 bits (510), Expect = 2e-61
Identities = 66/201 (32%), Positives = 100/201 (49%), Gaps = 26/201 (12%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF T M GY E +TDPSY +QI+ LTYP IGN G D ES ++ GL+
Sbjct: 30 VFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDAD---------EESSQVHAQGLV 80
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
+ D+ S++ + L +L+ HNI A+A++DTR+LT+ +RE G +G I+ G A
Sbjct: 81 IRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAA 140
Query: 124 VTVEDLVFVDPNRG-NLVDQVSTKEVVTYN----------------PTGSVHLCVVDCGL 166
+ +E G +L +V+T E ++ H+ D G
Sbjct: 141 LALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPQAKKEDELPFHVVAYDFGA 200
Query: 167 KYNQLRCLIQRGAKLSVIPWN 187
K N LR L+ RG +L+++P
Sbjct: 201 KRNILRMLVDRGCRLTIVPAQ 221
Score = 72.9 bits (180), Expect = 1e-14
Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 29/95 (30%)
Query: 177 RGAKLSVIPWNHPIK----------------------VPQGWQPLFTNANDGTNEGIVHE 214
G NHP+K +P + + DGT +GI
Sbjct: 290 HGG-------NHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRT 342
Query: 215 SLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSK 249
P FS Q +PE + GP D LFD FI + +
Sbjct: 343 DKPAFSFQGNPEASPGPHDAAPLFDHFIELIEQYR 377
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
1jdb_B* 1kee_A* 1t36_A*
Length = 1073
Score = 51.0 bits (123), Expect = 3e-07
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 273 IAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTYNA 321
+AK + +RK+R+ + P K++DT AAE T Y+Y TY
Sbjct: 502 LAKLAGVREAE-IRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEE 549
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II,
structural genomics, protein structure initiative; 2.30A
{Listeria innocua}
Length = 254
Score = 45.0 bits (107), Expect = 1e-05
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 203 ANDGTNEGIVHESLPFF--SVQFHPEHTAG--PADLELLFDIFINAVRDSKTR 251
DG E + ++LP + VQ+HPE P + LF ++ + + +
Sbjct: 195 TADGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQ-LFQALVDESKKTMVK 246
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Length = 315
Score = 42.7 bits (100), Expect = 9e-05
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 6/89 (6%)
Query: 166 LKYNQLRCLIQRGAKLSVIPWNHP--IKVPQGWQPLFTNANDGTNEGIV---HESLPFFS 220
L + L K S+ N K+ + + L TN DG E I P +
Sbjct: 179 LLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNT-DGKIEFISTMEGYKYPVYG 237
Query: 221 VQFHPEHTAGPADLELLFDIFINAVRDSK 249
VQ+HPE NAV+ +
Sbjct: 238 VQWHPEKAPYEWKNLDGISHAPNAVKTAF 266
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.5 bits (83), Expect = 0.005
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 25/53 (47%)
Query: 281 KKTSVRKMREDNGIRPYNKQIDTLAAEH-PAQTNYLYLTYNATAHDLAVKETV 332
+K +++K+ ++ Y A + PA LA+K T+
Sbjct: 18 EKQALKKL--QASLKLY-------ADDSAPA---------------LAIKATM 46
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.007
Identities = 55/352 (15%), Positives = 97/352 (27%), Gaps = 135/352 (38%)
Query: 31 PLIGNYG-------VPP-------QDKDEHGILKYFESHRIWISGLIVGDMCDTPSHWNS 76
PL ++G VP Q +++ F + D D P+
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQ------FNKILPEPTEGFAAD--DEPTT--P 57
Query: 77 ASTLGEWLR--AHNIPALANVDTRRLTKHIR---ECGVVSGKIVHGSVAPLAVTVEDLVF 131
A +G++L + + ++ E + G +H A L +
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT--- 114
Query: 132 VDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKLSVIPWNHPIK 191
V TKE++ Y R + +R P++
Sbjct: 115 ---------TLVKTKELIKN----------------YITARIMAKR-------PFDKKSN 142
Query: 192 VPQGWQPLFTNANDGTNEGIVHESLPFFSV---QFHPEHTAGPADL---ELLFDIFINAV 245
LF +G + ++ Q G D EL
Sbjct: 143 -----SALFRAVGEGNAQ--------LVAIFGGQ-------GNTDDYFEEL--------- 173
Query: 246 RDSKTRTPVPPIRKTIYDTLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLA 305
RD +Y T LI S +T + + + + + + ++ L
Sbjct: 174 RD-------------LYQTYHVLVGDLIKFSAETLSELIRTTLDAE---KVFTQGLNILE 217
Query: 306 A-EHPAQT---NYL----------YLT----YNATAH--DLAVKETVSIIKG 337
E+P+ T +YL + Y TA E S +KG
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Score = 31.9 bits (72), Expect = 0.33
Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 41/128 (32%)
Query: 16 MTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWI--------------SG 61
+ P +H +LV LI +D ++ + F + I I SG
Sbjct: 423 VASP-FHSHLLVPASDLI------NKDLVKNNVS--FNAKDIQIPVYDTFDGSDLRVLSG 473
Query: 62 LIVGDMCDT----PSHWNSASTLGEWLRAHNI----P-ALANVDTRRLTKHIRE-CGVVS 111
I + D P W + + +A +I P + + LT ++ GV
Sbjct: 474 SISERIVDCIIRLPVKWETTTQ----FKATHILDFGPGGASGLGV--LTHRNKDGTGV-- 525
Query: 112 GKIVHGSV 119
IV G++
Sbjct: 526 RVIVAGTL 533
>2a9v_A GMP synthase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2, ligase;
2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Length = 212
Score = 35.2 bits (82), Expect = 0.018
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Query: 210 GIVHESLPFFSVQFHPE--HT 228
G H++ P ++ QFHPE HT
Sbjct: 165 GFYHKTRPIYATQFHPEVEHT 185
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan
biosynthesis, glutamine amidotransferase, allosteric
interaction, lyase; 2.50A {Sulfolobus solfataricus}
SCOP: c.23.16.1
Length = 195
Score = 34.4 bits (80), Expect = 0.027
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 201 TNANDGTNEGIVHESLPFFSVQFHPE 226
+A D I HE P + VQFHPE
Sbjct: 152 ISAEDNEIMAIHHEEYPIYGVQFHPE 177
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase;
HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1
PDB: 1i7q_B 1i7s_B*
Length = 192
Score = 34.4 bits (80), Expect = 0.027
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 205 DGTNEGIVHESLPFFSVQFHPE 226
+G + H++ QFHPE
Sbjct: 150 NGMVMAVRHDADRVCGFQFHPE 171
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine
nucleotide biosy process, ligase; HET: XMP; 2.72A
{Plasmodium falciparum}
Length = 556
Score = 35.3 bits (82), Expect = 0.028
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPE--HT 228
K+P+ + + ++ N I ++ + VQ+HPE +
Sbjct: 177 KIPENFYLVSSSEN-CLICSIYNKEYNIYGVQYHPEVYES 215
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel,
chorismate, type 1 glutamine amidotransfera phenazine
biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP}
PDB: 3r74_A* 3r76_A*
Length = 645
Score = 35.2 bits (81), Expect = 0.030
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 207 TNEGIVH--ESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSKTRTPV 254
G VH F S+QFH E +L + +A+R K T +
Sbjct: 594 PRTGEVHALRGPTFSSMQFHAESVLTVDGPRILGEAITHAIRREKRMTAL 643
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP
synthetase, GMP biosynthesis, glutamine
amidotransferase, ligase, cytoplasm; 2.40A {Homo
sapiens}
Length = 218
Score = 33.7 bits (78), Expect = 0.052
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Query: 210 GIVHESLPFFSVQFHPE--HT 228
GI +ES + QFHPE T
Sbjct: 175 GIANESKKLYGAQFHPEVGLT 195
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene,
phosphoprotein, GMP synthetase, guanine monophosphate
synthetase, chromosomal rearrangement; HET: XMP; 2.5A
{Homo sapiens}
Length = 697
Score = 34.2 bits (79), Expect = 0.066
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Query: 210 GIVHESLPFFSVQFHPE--HT 228
GI +ES + QFHPE T
Sbjct: 180 GIANESKKLYGAQFHPEVGLT 200
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.070
Identities = 46/355 (12%), Positives = 89/355 (25%), Gaps = 130/355 (36%)
Query: 35 NYG-----VPPQDKDEHGILKYFESHRIWISGLIVGDMCDTPSHWNSASTLGEWLRAHNI 89
NY + + + + + + R +N + +N+
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQR--------------DRLYND----NQVFAKYNV 131
Query: 90 PALANVDTRRLTKHIRECGVVSGKIVHG------SVAPLAVTV----------EDLVF-- 131
L +L + + E ++ G + +A+ V + +F
Sbjct: 132 SRLQPYL--KLRQALLELRPAKNVLIDGVLGSGKTW--VALDVCLSYKVQCKMDFKIFWL 187
Query: 132 ---------------------VDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVDCGLKYNQ 170
+DPN + D + N +H ++
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-------SSNIKLRIHS------IQAEL 234
Query: 171 LRCLIQRGAKLSVIP----WNHPIKVPQGWQP-------LFT-----NANDGTNEGIVHE 214
R L + + ++ N + W L T + + H
Sbjct: 235 RRLLKSKPYENCLLVLLNVQN-----AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 215 SLPFFSVQFHPEHTAG---------PADL--E------LLFDIFINAVRDSKTRTPVPPI 257
SL S+ P+ P DL E I ++RD
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD--NW 347
Query: 258 RKTIYDTLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQT 312
+ D L +I S + RKM + + P + I P
Sbjct: 348 KHVNCDKL----TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-------PTIL 391
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics
initiative, RSGI, structural genomics, ligase; HET: GLN;
2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10
PDB: 1vcn_A 1vcm_A
Length = 550
Score = 33.6 bits (78), Expect = 0.077
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 217 PFF-SVQFHPEHTAGPADLELLFDIFINAVRDSKTR 251
PFF +Q HPE + P F F+ A + R
Sbjct: 514 PFFLGLQSHPEFKSRPMRPSPPFVGFVEAALAYQER 549
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming),
cytidine 5 triphosphate synthase, ammonia lyase; 2.30A
{Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB:
2ad5_A*
Length = 545
Score = 33.6 bits (78), Expect = 0.081
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 217 PFF-SVQFHPEHTAGPADLELLFDIFINAVRDSKTR 251
P+F + QFHPE T+ P D LF F+ A + + R
Sbjct: 507 PWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKR 542
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase,
N-type ATP pyrophosphata transferase (glutamine
amidotransferase); HET: AMP CIT; 2.20A {Escherichia
coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Length = 525
Score = 32.8 bits (76), Expect = 0.14
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 210 GIVHESLPFFSVQFHPE--HT 228
+ +E F+ VQFHPE HT
Sbjct: 167 IMANEEKRFYGVQFHPEVTHT 187
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A
{Sulfolobus solfataricus}
Length = 535
Score = 32.8 bits (76), Expect = 0.14
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 217 PFF-SVQFHPEHTAGPADLELLFDIFINA 244
FF + Q HPE + P + ++ FI A
Sbjct: 503 KFFVATQAHPEFKSRPTNPSPIYLGFIRA 531
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella
burnetii}
Length = 527
Score = 32.8 bits (76), Expect = 0.17
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 210 GIVHESLPFFSVQFHPE--HT 228
+ FF +QFHPE HT
Sbjct: 170 AMADFKRRFFGLQFHPEVTHT 190
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase,
gatases, riken structural genomics/proteomics
initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP:
c.23.16.1 PDB: 2d7j_A
Length = 189
Score = 31.9 bits (73), Expect = 0.18
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 187 NHPIKVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELL 237
+ ++P ++ L + E + HE LP + VQFHPE E+L
Sbjct: 130 DEVKELPPKFKILARSET-CPIEAMKHEELPIYGVQFHPEVAHTEKGEEIL 179
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding,
ATP binding, purine nucleotide biosynthetic pathway,
structural genomics; 2.10A {Thermus thermophilus} PDB:
2ywc_A*
Length = 503
Score = 32.4 bits (75), Expect = 0.19
Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 191 KVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPE--HT 228
P GW+ + I + VQFHPE HT
Sbjct: 132 APPPGWRVVAETEE-NPVAAIASPDGRAYGVQFHPEVAHT 170
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase;
glutaminase domain, trypsanosoma brucei, ligase,
acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Length = 273
Score = 31.4 bits (71), Expect = 0.32
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 218 FFSVQFHPEHTAGPADLELLFDIFINAVRDSKTRTPVPPIRKTIYD 263
F +VQFHPE + P D + F+ A P ++ +
Sbjct: 227 FLAVQFHPEFISTPMDPAPTYLSFMAAAAKKDYVWPQKCSQRRLKQ 272
>1gpw_B Amidotransferase HISH; lyase/transferase, complex
(lyase/transferase), histidine biosynthesis,
glutaminase, glutamine amidotransferase; 2.4A
{Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A
2wjz_B
Length = 201
Score = 30.9 bits (71), Expect = 0.36
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 33/77 (42%)
Query: 191 KVPQ-GW-QPLFTNANDGT-------------NEGIV----HESLPF---------FSVQ 222
++P GW + +F + E ++ ++ F Q
Sbjct: 117 RLPHMGWNEVIFKDTFPNGYYYFVHTYRAVCEEEHVLGTTEYDGEIFPSAVRKGRILGFQ 176
Query: 223 FHPE--HTAGPADLELL 237
FHPE G +LL
Sbjct: 177 FHPEKSSKIG---RKLL 190
>3cr3_A PTS-dependent dihydroxyacetone kinase, ADP- binding subunit DHAL;
transient protein-protein complex transferase complex
PTS- dependent dihydroxyacetone kinase; HET: ADP; 2.10A
{Lactococcus lactis subsp} SCOP: a.208.1.1
Length = 192
Score = 30.6 bits (69), Expect = 0.54
Identities = 15/119 (12%), Positives = 31/119 (26%), Gaps = 20/119 (16%)
Query: 163 DCGLKYNQLRCLIQRGAK-----LSVIPWNHPIKVPQGWQPLFTNANDGTNEGIVHESLP 217
D G N + RG L V + + ++ + + G + + +
Sbjct: 36 DHGA--N-----MARGMSETMKALEVSNFGNVSEIFKKVAMTLMSKVGGASGPLYGSAFL 88
Query: 218 FFSVQFHPEHTAGPADLELLFDIFINAVRDSKTRTPVPPIRKTIYDTLVPKDEALIAKS 276
S + ++ + + R KT+ D L S
Sbjct: 89 AMS--------KTAIETLDTSELIYAGLEAIQKRGKAQVGEKTMVDIWSAFLNDLQTDS 139
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.0 bits (67), Expect = 0.71
Identities = 12/61 (19%), Positives = 15/61 (24%), Gaps = 36/61 (59%)
Query: 106 ECGVVSGKIVHGSVAPLAVTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVDCG 165
EC V KIV + G++V C CG
Sbjct: 26 ECKVYPPKIV----------------ERFSEGDVV-------------------C-ALCG 49
Query: 166 L 166
L
Sbjct: 50 L 50
>3pnl_B PTS-dependent dihydroxyacetone kinase, ADP-bindin DHAL; structural
genomics, montreal-kingston bacterial structural
initiative, BSGI; HET: ADP; 2.20A {Escherichia coli}
PDB: 2btd_A*
Length = 211
Score = 29.9 bits (67), Expect = 0.83
Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 15/122 (12%)
Query: 163 DCGLKYNQLRCLIQRGAK-----LSVIPWNHPIKVPQGWQPLFTNANDGTNEGIVHESLP 217
D GL N + RG L I + + ++ G + +
Sbjct: 38 DHGL--N-----MNRGFSKVVEKLPAIADKDIGFILKNTGMTLLSSVGGASGPLFGTFFI 90
Query: 218 FFSVQFHPEHTAGPADLELLFDIFINAVRDSKTRTPVPPIRKTIYDTLVPKDEALIAKSF 277
+ + +L + +F + +R P KT+ D VP E+L S
Sbjct: 91 RAAQATQARQSLTLEEL---YQMFRDGADGVISRGKAEPGDKTMCDVWVPVVESLRQSSE 147
Query: 278 QT 279
Q
Sbjct: 148 QN 149
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine
amidotransferase, glutaminase domain,
5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET:
CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Length = 289
Score = 29.5 bits (66), Expect = 1.4
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 218 FFSVQFHPEHTAGPADLELLFDIFINA 244
F VQFHPE ++ P + + A
Sbjct: 247 FVGVQFHPEFSSRPMKPSPPYLGLLLA 273
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for
structural genomi infectious diseases, csgid, serine
peptidase S66; 1.95A {Bacillus anthracis}
Length = 331
Score = 29.5 bits (67), Expect = 1.6
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 59 ISGLIVGDM--CDTPSHWNSASTLGEWLRAHNIPALANVD 96
+ G+++G M + + + +IP +AN
Sbjct: 260 VKGIVIGKMQKGAECTIEDIQEMIASKPELAHIPIIANAS 299
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural
genomics, NIA national institute of allergy and
infectious diseases; HET: AMP; 1.58A {Streptococcus
pneumoniae} PDB: 4e94_A*
Length = 346
Score = 29.1 bits (65), Expect = 1.8
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 59 ISGLIVGDMCDTPSHWNSASTLGEWLRAHNIPALANVD 96
I+GL+VG D H + L + + NIP + N++
Sbjct: 279 INGLLVGKPMDETFHDDYKEALLDIID-SNIPIVYNLN 315
>1whu_A Polynucleotide phosphorylase; 3'-5' RNA exonuclease; pnpase,
alpha-helical domain, structural genomics; NMR {Mus
musculus} SCOP: a.4.9.1
Length = 104
Score = 27.8 bits (62), Expect = 1.8
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 237 LFDIFINAVRDSKTR-TPVPPIRKTIYDTLVPK----DEALIAKSFQTPKKTSVRKMRED 291
L+ +F + D +R V IR + L K D+ I +SF K R + +
Sbjct: 30 LYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIESFNIVAKEVFRSIILN 89
Query: 292 NGIRP 296
R
Sbjct: 90 EYKRC 94
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix
bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Length = 515
Score = 29.5 bits (65), Expect = 1.9
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 51 YFES----HRIWISGLIVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDT 97
Y ES +W+ + ++ P + A + ++ H+ P L +V T
Sbjct: 7 YLESLNDGRVVWVGNEKIDNVATHPLTRDYAERVAQFYDLHHRPDLQDVLT 57
>2imz_A Endonuclease PI-MTUI; N-terminal cysteine sulfinic acid C-terminal
aminosuccinimide, hydrolase; 1.70A {Mycobacterium
tuberculosis}
Length = 168
Score = 28.6 bits (63), Expect = 2.2
Identities = 32/145 (22%), Positives = 47/145 (32%), Gaps = 10/145 (6%)
Query: 137 GNLVDQVSTKEVVTYNPTGSVHLCVVDCGLKYNQLRCLI----QRGAKLSVIPWNHPIKV 192
++VD VV G++H V R +I GA L P +H +
Sbjct: 20 EDVVDGRKPIHVVAAAKDGTLHARPVV-SWFDQGTRDVIGLRIAGGAILWATP-DHKVLT 77
Query: 193 PQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHT---AGPADLELLFDIFINAVRDSK 249
GW+ G F P A D + L D+ +R S
Sbjct: 78 EYGWRAA-GELRKGDRVAQPRRFDGFGDSAPIPARVQALADALDDKFLHDMLAEELRYSV 136
Query: 250 TRTPVPPIRKTIYDTLVPKDEALIA 274
R +P R +D V + L+A
Sbjct: 137 IREVLPTRRARTFDLEVEELHTLVA 161
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF
protein, center for structu genomics of infectious
diseases, immune system; 1.50A {Bacillus anthracis} PDB:
3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Length = 336
Score = 28.4 bits (64), Expect = 3.0
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 59 ISGLIVG---DMCDTPSHWNSASTLGEWLRAHNIPALANVD 96
+SG+I+G D ++ L E L+ IP LA+ D
Sbjct: 263 VSGIILGKHEQFDDCGTNRKPYEILLEVLQNQRIPLLADFD 303
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 2.30A {Thermus thermophilus}
SCOP: c.23.16.1
Length = 200
Score = 27.8 bits (63), Expect = 3.5
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 6/28 (21%)
Query: 218 FFSVQFHPE--HTAGPADLELLFDIFIN 243
+ QFHPE AG L L +
Sbjct: 172 LLAPQFHPEKSGKAG---LAFL-ALARR 195
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein
synthesis, protein regulation, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 97
Score = 26.8 bits (59), Expect = 3.7
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 66 DMCDTPSHWNSASTLGEWLRA 86
++C P S++ +WL +
Sbjct: 12 EICRKPVSPGCISSVSDWLIS 32
>2r1f_A Protein YCEG, predicted aminodeoxychorismate lyase; structural
genomics, unknown function, PFAM 02618, PSI-2, PR
structure initiative; 2.21A {Escherichia coli}
Length = 270
Score = 28.0 bits (63), Expect = 4.3
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 305 AAEHPAQTNYLY 316
AA HPA+T YLY
Sbjct: 224 AAAHPAKTPYLY 235
>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation;
3.93A {Tetrahymena thermophila} PDB: 2xzn_5
Length = 119
Score = 27.0 bits (59), Expect = 4.5
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 243 NAVRDSKTRTPVPPIRKTIYDTLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQID 302
NA R K R + T V KD+A+ K+ +VR M + + R +++
Sbjct: 7 NAGRSQKNRGHTRTVPCTNCGRQVAKDKAV--------KRYTVRDMVDPSSKRDIQQKLA 58
Query: 303 TLAAEHPAQTNYLYLTY 319
+ Y+ L Y
Sbjct: 59 FENEKQGIPKLYVKLQY 75
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT
structure initiative, midwest center for structural
genomic unknown function; HET: TLA PEG; 1.10A
{Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB:
1zrs_A 2aum_A 2aun_A
Length = 311
Score = 27.7 bits (62), Expect = 5.2
Identities = 6/41 (14%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 59 ISGLIVG---DMCDTPSHWNSASTLGEWLRAHNIPALANVD 96
+ + +G D + GE+ A +P ++
Sbjct: 244 LGAICLGSFTDCPRKEVAHSLERIFGEYAAAIEVPLYHHLP 284
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 27.2 bits (61), Expect = 6.8
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 88 NIPALANVDTRRLTKHIRECGVVSGKIVH-GSVA 120
N+ AL+ TR + ++E V G I++ S++
Sbjct: 142 NVLALSIC-TREAYQSMKERNVDDGHIININSMS 174
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB:
3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Length = 371
Score = 27.1 bits (60), Expect = 8.4
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 59 ISGLIVGDMCDT---PSHWNSASTLGEWLRAHNIPALANVD 96
+S +I+G S L E L IP L D
Sbjct: 295 VSAIILGKHELFDCAGSKRRPYEVLTEVLDGKQIPVLDGFD 335
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.421
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,309,220
Number of extensions: 319894
Number of successful extensions: 648
Number of sequences better than 10.0: 1
Number of HSP's gapped: 641
Number of HSP's successfully gapped: 49
Length of query: 337
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 243
Effective length of database: 4,077,219
Effective search space: 990764217
Effective search space used: 990764217
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.0 bits)