RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1128
(337 letters)
>d1a9xb1 c.8.3.1 (B:1502-1652) Carbamoyl phosphate synthetase, small
subunit N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 151
Score = 108 bits (272), Expect = 1e-29
Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 9/124 (7%)
Query: 4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
VF T M GY E +TDPSY +QI+ LTYP IGN G ES ++ GL+
Sbjct: 30 VFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTND---------ADEESSQVHAQGLV 80
Query: 64 VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
+ D+ S++ + L +L+ HNI A+A++DTR+LT+ +RE G +G I+ G A
Sbjct: 81 IRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAA 140
Query: 124 VTVE 127
+ +E
Sbjct: 141 LALE 144
>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase,
small subunit C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 228
Score = 69.8 bits (170), Expect = 1e-14
Identities = 20/64 (31%), Positives = 28/64 (43%)
Query: 186 WNHPIKVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAV 245
+P + + DGT +GI P FS Q +PE + GP D LFD FI +
Sbjct: 163 AVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGNPEASPGPHDAAPLFDHFIELI 222
Query: 246 RDSK 249
+
Sbjct: 223 EQYR 226
Score = 42.1 bits (98), Expect = 3e-05
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 16/77 (20%)
Query: 138 NLVDQVSTKEVVTYN----------------PTGSVHLCVVDCGLKYNQLRCLIQRGAKL 181
+L +V+T E ++ H+ D G K N LR L+ RG +L
Sbjct: 5 DLAKEVTTAEAYSWTQGSWTLTGGLPQAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRL 64
Query: 182 SVIPWNHPIKVPQGWQP 198
+++P + P
Sbjct: 65 TIVPAQTSAEDVLKMNP 81
>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 195
Score = 57.6 bits (138), Expect = 1e-10
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 185 PWNHPIKVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINA 244
+V + +A D I HE P + VQFHPE ++L++ F+N
Sbjct: 136 HSLVVDEVHRPLIVDAISAEDNEIMAIHHEEYPIYGVQFHPESVGTSLGYKILYN-FLNR 194
Query: 245 V 245
V
Sbjct: 195 V 195
>d1a9xa1 a.92.1.1 (A:403-555) Carbamoyl phosphate synthetase, large
subunit connection domain {Escherichia coli [TaxId:
562]}
Length = 153
Score = 56.6 bits (136), Expect = 1e-10
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 285 VRKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTYNA 321
+RK+R+ + P K++DT AAE T Y+Y TY
Sbjct: 111 IRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEE 147
>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 196
Score = 49.5 bits (117), Expect = 8e-08
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 186 WNHPIKVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAV 245
N I L ++ +G H++ P ++ QFHPE + +F FI
Sbjct: 129 HNDEIINLPDDFTLAASSATCQVQGFYHKTRPIYATQFHPEVEHTQYGRD-IFRNFIGIC 187
Query: 246 RDSK 249
+
Sbjct: 188 ASYR 191
Score = 32.2 bits (72), Expect = 0.060
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 159 LCVVDCGLKYNQL--RCLIQRGAKLSVIPWNHPIKVPQGWQPLFTNAN 204
+ VVD G ++ R L + G ++P + G L +
Sbjct: 4 IYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSELDGLDGLVLSGG 51
>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 188
Score = 47.6 bits (112), Expect = 3e-07
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 185 PWNHPIKVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFIN 243
+ ++P ++ L + E + HE LP + VQFHPE E+L F
Sbjct: 128 HMDEVKELPPKFKILARS-ETCPIEAMKHEELPIYGVQFHPEVAHTEKGEEIL-RNFAK 184
Score = 28.8 bits (63), Expect = 0.71
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 161 VVDCGLKYNQL--RCLIQRGAKLSVIPWNHPIK 191
++D G +Y R L G + +IP P++
Sbjct: 5 IMDNGGQYVHRIWRTLRYLGVETKIIPNTTPLE 37
>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
{Serratia marcescens [TaxId: 615]}
Length = 192
Score = 46.8 bits (110), Expect = 8e-07
Identities = 8/56 (14%), Positives = 13/56 (23%)
Query: 182 SVIPWNHPIKVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELL 237
V ++ + + + QFHPE LL
Sbjct: 127 PVARYHSLVGSNIPADLTVNARFGEMVMAVRDDRRRVCGFQFHPESILTTHGARLL 182
>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli
[TaxId: 562]}
Length = 205
Score = 42.6 bits (99), Expect = 2e-05
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Query: 185 PWNHPIKVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINA 244
+ + + +E F+ VQFHPE T + + + F+
Sbjct: 140 SHGDKVTAIPSDFITVASTESCPFAIMANEEKRFYGVQFHPEVTHTRQGMR-MLERFVRD 198
Query: 245 VRDSK 249
+ +
Sbjct: 199 ICQCE 203
Score = 38.0 bits (87), Expect = 7e-04
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 158 HLCVVDCGLKYNQL--RCLIQRGAKLSVIPWNHPIKVPQGWQPLFTNANDG 206
+ ++D G +Y QL R + + G + W+ + + P + G
Sbjct: 7 RILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGG 57
>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 258
Score = 41.1 bits (96), Expect = 8e-05
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 195 GWQPLFTNANDGTNEGIVHESLPFF-SVQFHPEHTAGPADLELLFDIFINAVRDSKTR 251
G + + +D E I + P+F + QFHPE T+ P D LF F+ A + + R
Sbjct: 199 GLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKR 256
>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 288
Score = 41.0 bits (95), Expect = 9e-05
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 16/87 (18%)
Query: 181 LSVIPWNHPIKVPQGWQPLFTNANDGTN--EGIVHESLPFFSVQFHPEHTAGP------- 231
LSV + K+ + + L TN + + P + VQ+HPE
Sbjct: 169 LSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGI 228
Query: 232 -------ADLELLFDIFINAVRDSKTR 251
L + F+N R +
Sbjct: 229 SHAPNAVKTAFYLAEFFVNEARKNNHH 255
>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 250
Score = 36.5 bits (84), Expect = 0.002
Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Query: 186 WNHPIKVPQGWQPLFTNANDGTNEGIVHESLPFF-SVQFHPEHTAGPADLELLFDIFINA 244
V P G E I + PFF +Q HPE + P F F+ A
Sbjct: 186 LERAGLVVSATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRPMRPSPPFVGFVEA 245
Query: 245 VRDSK 249
+
Sbjct: 246 ALAYQ 250
>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus
subtilis [TaxId: 1423]}
Length = 195
Score = 32.2 bits (72), Expect = 0.058
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 6/74 (8%)
Query: 178 GAKLSVIPWNHPIKVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELL 237
+ + P + G + ++G F FHPE T +L
Sbjct: 126 DEPFTGVFIRAPHILEAGENVEVLSEHNGRIVAAKQG--QFLGCSFHPELTEDHRVTQL- 182
Query: 238 FDIFINAVRDSKTR 251
F+ V + K +
Sbjct: 183 ---FVEMVEEYKQK 193
>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 202
Score = 31.0 bits (69), Expect = 0.14
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 217 PFFSVQFHPEHTAGPADLELLFDIFINAVRDSK 249
F FHPE T ++ F+N V+++K
Sbjct: 168 QFLGCSFHPELTDDHRLMQY----FLNMVKEAK 196
>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2
{Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 218
Score = 30.7 bits (68), Expect = 0.18
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 200 FTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSK 249
F++ + G N E FHPE A + F V++ K
Sbjct: 171 FSHESYGPNIIAAVEQNNCLGTVFHPELLPHTAFQQY----FYEKVKNYK 216
>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermotoga
maritima [TaxId: 2336]}
Length = 200
Score = 29.2 bits (64), Expect = 0.61
Identities = 12/52 (23%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 186 WNHPIKVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELL 237
+ V + L T DG QFHPE + +LL
Sbjct: 140 VHTYRAVCEEEHVLGTTEYDGEIFPSAVRKGRILGFQFHPEKS-SKIGRKLL 190
>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermus
thermophilus [TaxId: 274]}
Length = 195
Score = 28.5 bits (62), Expect = 0.96
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 6/61 (9%)
Query: 185 PWNHPIKVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPE--HTAGPADLELLFDIFI 242
+ + P L +GT + + QFHPE AG L L +
Sbjct: 137 YFANSYYGPLTPYSLGKGEYEGTPFTALLAKENLLAPQFHPEKSGKAG---LAFL-ALAR 192
Query: 243 N 243
Sbjct: 193 R 193
>d1whua_ a.4.9.1 (A:) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domain 3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 104
Score = 26.7 bits (59), Expect = 1.7
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 237 LFDIFINAVRDSKTR-TPVPPIRKTIYDTLVPK----DEALIAKSFQTPKKTSVRKMRED 291
L+ +F + D +R V IR + L K D+ I +SF K R + +
Sbjct: 30 LYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIESFNIVAKEVFRSIILN 89
Query: 292 NGIRP 296
R
Sbjct: 90 EYKRC 94
>d1g99a1 c.55.1.2 (A:1-197) Acetate kinase {Archaeon Methanosarcina
thermophila [TaxId: 2210]}
Length = 197
Score = 27.3 bits (60), Expect = 2.1
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 15 AMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKY 51
+ D ++HQ + Y Y +P ++HG+ KY
Sbjct: 145 IVFDTAFHQTMPPYAY----MYALPYDLYEKHGVRKY 177
>d2e1za1 c.55.1.2 (A:4-192) Propionate kinase {Salmonella
typhimurium [TaxId: 90371]}
Length = 189
Score = 27.2 bits (60), Expect = 2.5
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 15 AMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKY 51
A+ D S+HQ + Y YG+P + G+ +Y
Sbjct: 137 AVFDTSFHQTLAPEAY----LYGLPWEYFSSLGVRRY 169
>d1p1ma1 b.92.1.4 (A:1-49,A:331-404) Hypothetical protein TM0936
{Thermotoga maritima [TaxId: 2336]}
Length = 123
Score = 25.7 bits (56), Expect = 4.4
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 110 VSGKIVHGSVAP--LAVTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVD 163
+SGK+V + A DLV +D + + + K + + +G V +V
Sbjct: 42 LSGKLVMPKIEEGWNA----DLVVIDLDLPEMFPVQNIKNHLVHAFSGEVFATMVA 93
>d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of
imidazoleglycerolphosphate synthase HisF {Baker's yeast
(Saccharomyces cerevisiae), His7 [TaxId: 4932]}
Length = 232
Score = 26.4 bits (57), Expect = 4.6
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 5/23 (21%)
Query: 217 PFFSVQFHPE--HTAGPADLELL 237
F+ QFHPE AG L ++
Sbjct: 189 NIFATQFHPEKSGKAG---LNVI 208
>d1xb4a1 a.4.5.54 (A:2-125) Vacuolar protein sorting-associated
protein VPS25 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 124
Score = 25.4 bits (55), Expect = 6.9
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 48 ILKYFESHRIWISGLIVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRR 99
I +Y ++ +IW + V + +S ST + + + N D +R
Sbjct: 33 ISQYCKTKKIWY--MSVDGTVINDNELDSGSTDNDDSKKISKNLFNNEDIQR 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.421
Gapped
Lambda K H
0.267 0.0465 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,298,335
Number of extensions: 60096
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 27
Length of query: 337
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 251
Effective length of database: 1,226,816
Effective search space: 307930816
Effective search space used: 307930816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.8 bits)