BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11283
(314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N6R|B Chain B, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|D Chain D, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|F Chain F, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|H Chain H, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|J Chain J, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|L Chain L, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
Length = 531
Score = 402 bits (1032), Expect = e-112, Method: Compositional matrix adjust.
Identities = 193/332 (58%), Positives = 241/332 (72%), Gaps = 33/332 (9%)
Query: 16 HLMR-VRGQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHR 74
H+M+ + Q++ RA A GGG K I AQH +GKLTARERV+LL D G+F E+DMF+ HR
Sbjct: 20 HMMKDILEQLEDRRAAARLGGGQKRIDAQHGRGKLTARERVDLLLDEGSFEEFDMFVTHR 79
Query: 75 CVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLT 134
C DFNM ++K GD VVTG G++NGR V++FSQDFTV GGS+S H++KICKIMD AM
Sbjct: 80 CTDFNMQDQKPAGDGVVTGWGTINGRVVYVFSQDFTVLGGSVSETHSKKICKIMDMAMQN 139
Query: 135 GAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAIT 194
GAP++G+NDSGGARIQEGV+SLA Y VFQRNI+ASGVVPQIS+I+GPCAGGAVYSPA+T
Sbjct: 140 GAPVIGINDSGGARIQEGVDSLAGYGEVFQRNIMASGVVPQISMIMGPCAGGAVYSPAMT 199
Query: 195 DFTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNV 254
DF FMV+ SSY+F+TGPDV+K+VTNE +S EELGGA THT S VA AF ND++A+ V
Sbjct: 200 DFIFMVKDSSYMFVTGPDVVKTVTNEQVSAEELGGATTHTRKSSVADAAFENDVEALAEV 259
Query: 255 RHLLGFLPMNNTQKPPIR--------------------------------RCYDSREFFE 282
R L+ FLP+NN +KPP+R + D +F+E
Sbjct: 260 RRLVDFLPLNNREKPPVRPFFDDPDRIEPSLDTLVPDNPNTPYDMKELIHKLADEGDFYE 319
Query: 283 IQPKYAKNIIVGFARINGHSVGIVANQPKVAA 314
IQ ++AKNII GF R+ G +VG+VANQP V A
Sbjct: 320 IQEEFAKNIITGFIRLEGRTVGVVANQPLVLA 351
>pdb|1VRG|A Chain A, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|B Chain B, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|C Chain C, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|D Chain D, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|E Chain E, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|F Chain F, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
Length = 527
Score = 347 bits (889), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 174/329 (52%), Positives = 219/329 (66%), Gaps = 34/329 (10%)
Query: 20 VRGQIDSMRAIAL---QGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCV 76
+R +I+ ++ I QGGG + ++ QH GKLTA ER+ELL DPGTFVE D F+EHR
Sbjct: 15 LRDKIEELKKIEKEIEQGGGPEKVEKQHRAGKLTAWERLELLLDPGTFVEIDKFVEHRNT 74
Query: 77 DFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGA 136
F + + K+P D V+TG G +NGR V +FSQDFTV GGSL HA+KI K++D A+ G
Sbjct: 75 YFGLDKVKLPRDGVITGVGEINGRKVAVFSQDFTVXGGSLGEXHAKKIVKLLDLALKXGI 134
Query: 137 PIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDF 196
P++G+NDSGGARIQEGV++LA Y +F RN LASGVVPQI++I GPCAGGAVYSPA+TDF
Sbjct: 135 PVIGINDSGGARIQEGVDALAGYGEIFLRNTLASGVVPQITVIAGPCAGGAVYSPALTDF 194
Query: 197 TFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRH 256
V+ ++ FITGP+VIK+VT E+ISQE+LGGA H SG AH ND A VR
Sbjct: 195 IVXVDQTARXFITGPNVIKAVTGEEISQEDLGGAXVHNQKSGNAHFLADNDEKAXSLVRT 254
Query: 257 LLGFLPMNNTQKPP-------------------------------IRRCYDSREFFEIQP 285
LL +LP NN ++PP I+R D EFFE+QP
Sbjct: 255 LLSYLPSNNAEEPPVEDPDTSLETPEDILDILPDNPNKGYDVRDVIKRVVDHGEFFEVQP 314
Query: 286 KYAKNIIVGFARINGHSVGIVANQPKVAA 314
+AKNI++GFARI G +VGIVANQP V A
Sbjct: 315 YFAKNIVIGFARIQGKTVGIVANQPSVLA 343
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 60/153 (39%), Gaps = 35/153 (22%)
Query: 45 NKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFI 104
NKG R+ ++ + D G F E + ++V G + G+TV I
Sbjct: 291 NKG-YDVRDVIKRVVDHGEFFEVQPYF---------------AKNIVIGFARIQGKTVGI 334
Query: 105 FSQDFTVFGGSL---SSVHAEKICKIMDQAML-------TGAPIVGLNDSGGARIQEGVE 154
+ +V G L SS A + + +D + T + G+ G I+ G +
Sbjct: 335 VANQPSVLAGVLDIDSSDKAARFIRFLDAFNIPILTFVDTPGYLPGVAQEHGGIIRHGAK 394
Query: 155 SLAAYSSVFQRNILASGVVPQISLILGPCAGGA 187
L AYS VP+I++IL GGA
Sbjct: 395 LLYAYS---------EATVPKITVILRKAYGGA 418
>pdb|3IBB|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|C Chain C, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|D Chain D, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|E Chain E, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|F Chain F, Propionyl-Coa Carboxylase Beta Subunit, D422a
Length = 530
Score = 344 bits (882), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 168/314 (53%), Positives = 211/314 (67%), Gaps = 34/314 (10%)
Query: 31 ALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSV 90
A G ++++ QH KGKLTARER++LL D G+FVE D F HR +F + + GD V
Sbjct: 28 ATHAGSARAVEKQHAKGKLTARERIDLLLDEGSFVELDEFARHRSTNFGLDANRPYGDGV 87
Query: 91 VTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQ 150
VTG G+V+GR V +FSQDFTVFGG+L V+ +KI K+MD A+ TG P+VG+NDSGGARIQ
Sbjct: 88 VTGYGTVDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQ 147
Query: 151 EGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITG 210
EGV SL AY +F+RN ASGV+PQISL++GPCAGGAVYSPAITDFT MV+ +S++FITG
Sbjct: 148 EGVASLGAYGEIFRRNTHASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITG 207
Query: 211 PDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLPMNNTQKPP 270
PDVIK+VT ED+ EELGGA+TH S SGVAH+ ++ DA++ V+ LL +LP NN +PP
Sbjct: 208 PDVIKTVTGEDVGFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYLPSNNLSEPP 267
Query: 271 ----------------------------------IRRCYDSREFFEIQPKYAKNIIVGFA 296
I D EFFE QP +A NI+ GF
Sbjct: 268 AFPEEADLAVTDEDAELDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPNILTGFG 327
Query: 297 RINGHSVGIVANQP 310
R+ G VGIVANQP
Sbjct: 328 RVEGRPVGIVANQP 341
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 22/134 (16%)
Query: 67 YDM--FMEHRCVDFNMSEKK-IPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEK 123
YDM +EH D E + + +++TG G V GR V I + F G L +EK
Sbjct: 296 YDMHSVIEHVLDDAEFFETQPLFAPNILTGFGRVEGRPVGIVANQPMQFAGCLDITASEK 355
Query: 124 ICKIMDQAMLTGAPIV----------GLNDSGGARIQEGVESLAAYSSVFQRNILASGVV 173
+ + P++ G++ I+ G + + AY A V
Sbjct: 356 AARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAY---------AEATV 406
Query: 174 PQISLILGPCAGGA 187
P I++I GGA
Sbjct: 407 PLITVITRKAFGGA 420
>pdb|3MFM|C Chain C, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|F Chain F, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|A Chain A, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|B Chain B, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|D Chain D, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|E Chain E, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
Length = 530
Score = 344 bits (882), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 168/314 (53%), Positives = 211/314 (67%), Gaps = 34/314 (10%)
Query: 31 ALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSV 90
A G ++++ QH KGKLTARER++LL D G+FVE D F HR +F + + GD V
Sbjct: 28 ATHAGSARAVEKQHAKGKLTARERIDLLLDEGSFVELDEFARHRSTNFGLDANRPYGDGV 87
Query: 91 VTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQ 150
VTG G+V+GR V +FSQDFTVFGG+L V+ +KI K+MD A+ TG P+VG+NDSGGARIQ
Sbjct: 88 VTGYGTVDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQ 147
Query: 151 EGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITG 210
EGV SL AY +F+RN ASGV+PQISL++GPCAGGAVYSPAITDFT MV+ +S++FITG
Sbjct: 148 EGVASLGAYGEIFRRNTHASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITG 207
Query: 211 PDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLPMNNTQKPP 270
PDVIK+VT ED+ EELGGA+TH S SGVAH+ ++ DA++ V+ LL +LP NN +PP
Sbjct: 208 PDVIKTVTGEDVGFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYLPSNNLSEPP 267
Query: 271 ----------------------------------IRRCYDSREFFEIQPKYAKNIIVGFA 296
I D EFFE QP +A NI+ GF
Sbjct: 268 AFPEEADLAVTDEDAELDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPNILTGFG 327
Query: 297 RINGHSVGIVANQP 310
R+ G VGIVANQP
Sbjct: 328 RVEGRPVGIVANQP 341
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 22/134 (16%)
Query: 67 YDM--FMEHRCVDFNMSEKK-IPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEK 123
YDM +EH D E + + +++TG G V GR V I + F G L +EK
Sbjct: 296 YDMHSVIEHVLDDAEFFETQPLFAPNILTGFGRVEGRPVGIVANQPMQFAGCLDITASEK 355
Query: 124 ICKIMDQAMLTGAPIV----------GLNDSGGARIQEGVESLAAYSSVFQRNILASGVV 173
+ + P++ G++ I+ G + + AY A V
Sbjct: 356 AARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAY---------AEATV 406
Query: 174 PQISLILGPCAGGA 187
P I++I GGA
Sbjct: 407 PLITVITRKAFGGA 420
>pdb|3IB9|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422l
pdb|3IB9|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422l
Length = 530
Score = 344 bits (882), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 168/314 (53%), Positives = 211/314 (67%), Gaps = 34/314 (10%)
Query: 31 ALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSV 90
A G ++++ QH KGKLTARER++LL D G+FVE D F HR +F + + GD V
Sbjct: 28 ATHAGSARAVEKQHAKGKLTARERIDLLLDEGSFVELDEFARHRSTNFGLDANRPYGDGV 87
Query: 91 VTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQ 150
VTG G+V+GR V +FSQDFTVFGG+L V+ +KI K+MD A+ TG P+VG+NDSGGARIQ
Sbjct: 88 VTGYGTVDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQ 147
Query: 151 EGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITG 210
EGV SL AY +F+RN ASGV+PQISL++GPCAGGAVYSPAITDFT MV+ +S++FITG
Sbjct: 148 EGVASLGAYGEIFRRNTHASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITG 207
Query: 211 PDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLPMNNTQKPP 270
PDVIK+VT ED+ EELGGA+TH S SGVAH+ ++ DA++ V+ LL +LP NN +PP
Sbjct: 208 PDVIKTVTGEDVGFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYLPSNNLSEPP 267
Query: 271 ----------------------------------IRRCYDSREFFEIQPKYAKNIIVGFA 296
I D EFFE QP +A NI+ GF
Sbjct: 268 AFPEEADLAVTDEDAELDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPNILTGFG 327
Query: 297 RINGHSVGIVANQP 310
R+ G VGIVANQP
Sbjct: 328 RVEGRPVGIVANQP 341
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 22/134 (16%)
Query: 67 YDM--FMEHRCVDFNMSEKK-IPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEK 123
YDM +EH D E + + +++TG G V GR V I + F G L +EK
Sbjct: 296 YDMHSVIEHVLDDAEFFETQPLFAPNILTGFGRVEGRPVGIVANQPMQFAGCLDITASEK 355
Query: 124 ICKIMDQAMLTGAPIV----------GLNDSGGARIQEGVESLAAYSSVFQRNILASGVV 173
+ + P++ G++ I+ G + + AY A V
Sbjct: 356 AARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAY---------AEATV 406
Query: 174 PQISLILGPCAGGA 187
P I++I GGA
Sbjct: 407 PLITVITRKAFGGA 420
>pdb|1XNV|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #1
pdb|1XNV|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #1
pdb|1XNY|A Chain A, Biotin And Propionyl-coa Bound To Acyl-coa Carboxylase
Beta Subunit From S. Coelicolor (pccb)
pdb|1XNY|B Chain B, Biotin And Propionyl-coa Bound To Acyl-coa Carboxylase
Beta Subunit From S. Coelicolor (pccb)
pdb|1XO6|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|C Chain C, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|D Chain D, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|E Chain E, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|F Chain F, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
Length = 530
Score = 344 bits (882), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 168/314 (53%), Positives = 211/314 (67%), Gaps = 34/314 (10%)
Query: 31 ALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSV 90
A G ++++ QH KGKLTARER++LL D G+FVE D F HR +F + + GD V
Sbjct: 28 ATHAGSARAVEKQHAKGKLTARERIDLLLDEGSFVELDEFARHRSTNFGLDANRPYGDGV 87
Query: 91 VTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQ 150
VTG G+V+GR V +FSQDFTVFGG+L V+ +KI K+MD A+ TG P+VG+NDSGGARIQ
Sbjct: 88 VTGYGTVDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQ 147
Query: 151 EGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITG 210
EGV SL AY +F+RN ASGV+PQISL++GPCAGGAVYSPAITDFT MV+ +S++FITG
Sbjct: 148 EGVASLGAYGEIFRRNTHASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITG 207
Query: 211 PDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLPMNNTQKPP 270
PDVIK+VT ED+ EELGGA+TH S SGVAH+ ++ DA++ V+ LL +LP NN +PP
Sbjct: 208 PDVIKTVTGEDVGFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYLPSNNLSEPP 267
Query: 271 ----------------------------------IRRCYDSREFFEIQPKYAKNIIVGFA 296
I D EFFE QP +A NI+ GF
Sbjct: 268 AFPEEADLAVTDEDAELDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPNILTGFG 327
Query: 297 RINGHSVGIVANQP 310
R+ G VGIVANQP
Sbjct: 328 RVEGRPVGIVANQP 341
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 22/134 (16%)
Query: 67 YDM--FMEHRCVDFNMSEKK-IPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEK 123
YDM +EH D E + + +++TG G V GR V I + F G L +EK
Sbjct: 296 YDMHSVIEHVLDDAEFFETQPLFAPNILTGFGRVEGRPVGIVANQPMQFAGCLDITASEK 355
Query: 124 ICKIMDQAMLTGAPIV----------GLNDSGGARIQEGVESLAAYSSVFQRNILASGVV 173
+ + P++ G++ I+ G + + AY A V
Sbjct: 356 AARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAY---------AEATV 406
Query: 174 PQISLILGPCAGGA 187
P I++I GGA
Sbjct: 407 PLITVITRKAFGGA 420
>pdb|3IAV|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422v
pdb|3IAV|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422v
Length = 530
Score = 344 bits (882), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 168/314 (53%), Positives = 211/314 (67%), Gaps = 34/314 (10%)
Query: 31 ALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSV 90
A G ++++ QH KGKLTARER++LL D G+FVE D F HR +F + + GD V
Sbjct: 28 ATHAGSARAVEKQHAKGKLTARERIDLLLDEGSFVELDEFARHRSTNFGLDANRPYGDGV 87
Query: 91 VTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQ 150
VTG G+V+GR V +FSQDFTVFGG+L V+ +KI K+MD A+ TG P+VG+NDSGGARIQ
Sbjct: 88 VTGYGTVDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQ 147
Query: 151 EGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITG 210
EGV SL AY +F+RN ASGV+PQISL++GPCAGGAVYSPAITDFT MV+ +S++FITG
Sbjct: 148 EGVASLGAYGEIFRRNTHASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITG 207
Query: 211 PDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLPMNNTQKPP 270
PDVIK+VT ED+ EELGGA+TH S SGVAH+ ++ DA++ V+ LL +LP NN +PP
Sbjct: 208 PDVIKTVTGEDVGFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYLPSNNLSEPP 267
Query: 271 ----------------------------------IRRCYDSREFFEIQPKYAKNIIVGFA 296
I D EFFE QP +A NI+ GF
Sbjct: 268 AFPEEADLAVTDEDAELDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPNILTGFG 327
Query: 297 RINGHSVGIVANQP 310
R+ G VGIVANQP
Sbjct: 328 RVEGRPVGIVANQP 341
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 22/134 (16%)
Query: 67 YDM--FMEHRCVDFNMSEKK-IPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEK 123
YDM +EH D E + + +++TG G V GR V I + F G L +EK
Sbjct: 296 YDMHSVIEHVLDDAEFFETQPLFAPNILTGFGRVEGRPVGIVANQPMQFAGCLDITASEK 355
Query: 124 ICKIMDQAMLTGAPIV----------GLNDSGGARIQEGVESLAAYSSVFQRNILASGVV 173
+ + P++ G++ I+ G + + AY A V
Sbjct: 356 AARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAY---------AEATV 406
Query: 174 PQISLILGPCAGGA 187
P I++I GGA
Sbjct: 407 PLITVITRKAFGGA 420
>pdb|1XNW|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|C Chain C, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|D Chain D, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|E Chain E, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|F Chain F, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
Length = 530
Score = 344 bits (882), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 168/314 (53%), Positives = 211/314 (67%), Gaps = 34/314 (10%)
Query: 31 ALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSV 90
A G ++++ QH KGKLTARER++LL D G+FVE D F HR +F + + GD V
Sbjct: 28 ATHAGSARAVEKQHAKGKLTARERIDLLLDEGSFVELDEFARHRSTNFGLDANRPYGDGV 87
Query: 91 VTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQ 150
VTG G+V+GR V +FSQDFTVFGG+L V+ +KI K+MD A+ TG P+VG+NDSGGARIQ
Sbjct: 88 VTGYGTVDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQ 147
Query: 151 EGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITG 210
EGV SL AY +F+RN ASGV+PQISL++GPCAGGAVYSPAITDFT MV+ +S++FITG
Sbjct: 148 EGVASLGAYGEIFRRNTHASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITG 207
Query: 211 PDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLPMNNTQKPP 270
PDVIK+VT ED+ EELGGA+TH S SGVAH+ ++ DA++ V+ LL +LP NN +PP
Sbjct: 208 PDVIKTVTGEDVGFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYLPSNNLSEPP 267
Query: 271 ----------------------------------IRRCYDSREFFEIQPKYAKNIIVGFA 296
I D EFFE QP +A NI+ GF
Sbjct: 268 AFPEEADLAVTDEDAELDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPNILTGFG 327
Query: 297 RINGHSVGIVANQP 310
R+ G VGIVANQP
Sbjct: 328 RVEGRPVGIVANQP 341
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 22/134 (16%)
Query: 67 YDM--FMEHRCVDFNMSEKK-IPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEK 123
YDM +EH D E + + +++TG G V GR V I + F G L +EK
Sbjct: 296 YDMHSVIEHVLDDAEFFETQPLFAPNILTGFGRVEGRPVGIVANQPMQFAGCLDITASEK 355
Query: 124 ICKIMDQAMLTGAPIV----------GLNDSGGARIQEGVESLAAYSSVFQRNILASGVV 173
+ + P++ G++ I+ G + + AY A V
Sbjct: 356 AARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAY---------AEATV 406
Query: 174 PQISLILGPCAGGA 187
P I++I GGA
Sbjct: 407 PLITVITRKAFGGA 420
>pdb|2A7S|A Chain A, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|B Chain B, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|C Chain C, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|D Chain D, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|E Chain E, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|F Chain F, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
Length = 548
Score = 308 bits (789), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 163/327 (49%), Positives = 204/327 (62%), Gaps = 40/327 (12%)
Query: 23 QIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSE 82
++ R +L G +++ H KGKLTARER+ L D +FVE D +HR +FN+ E
Sbjct: 31 ELHKRREESLHPVGEDAVEKVHAKGKLTARERIYALLDEDSFVELDALAKHRSTNFNLGE 90
Query: 83 KKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLN 142
K+ GD VVTG G+++GR V IFSQD TVFGGSL V+ EKI K+ + A+ TG P++G+N
Sbjct: 91 KRPLGDGVVTGYGTIDGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTGRPLIGIN 150
Query: 143 DSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEH 202
D GARIQEGV SL YS +F+ NILASGV+PQISLI+G AGG VYSPA+TDF MV+
Sbjct: 151 DGAGARIQEGVVSLGLYSRIFRNNILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQ 210
Query: 203 SSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLP 262
+S +FITGPDVIK+VT E+++ EELGGA TH + SG AH A S + DA VR LL +LP
Sbjct: 211 TSQMFITGPDVIKTVTGEEVTMEELGGAHTHMAKSGTAHYAASGEQDAFDYVRELLSYLP 270
Query: 263 MNNTQKPP---------------------------------------IRRCYDSREFFEI 283
NN+ P I R D EF EI
Sbjct: 271 PNNSTDAPRYQAAAPTGPIEENLTDEDLELDTLIPDSPNQPYDMHEVITRLLDD-EFLEI 329
Query: 284 QPKYAKNIIVGFARINGHSVGIVANQP 310
Q YA+NI+VGF RI+G VGIVANQP
Sbjct: 330 QAGYAQNIVVGFGRIDGRPVGIVANQP 356
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 19/109 (17%)
Query: 89 SVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGG-- 146
++V G G ++GR V I + T F G L +EK + + PIV L D G
Sbjct: 336 NIVVGFGRIDGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDCFNIPIVMLVDVPGFL 395
Query: 147 --------ARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGA 187
I+ G + L AY VP+I++I GGA
Sbjct: 396 PGTDQEYNGIIRRGAKLLYAY---------GEATVPKITVITRKAYGGA 435
>pdb|2BZR|A Chain A, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|B Chain B, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|C Chain C, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|D Chain D, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|E Chain E, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|F Chain F, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
Length = 548
Score = 308 bits (788), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 163/327 (49%), Positives = 204/327 (62%), Gaps = 40/327 (12%)
Query: 23 QIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSE 82
++ R +L G +++ H KGKLTARER+ L D +FVE D +HR +FN+ E
Sbjct: 31 ELHKRREESLHPVGEDAVEKVHAKGKLTARERIYALLDEDSFVELDALAKHRSTNFNLGE 90
Query: 83 KKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLN 142
K+ GD VVTG G+++GR V IFSQD TVFGGSL V+ EKI K+ + A+ TG P++G+N
Sbjct: 91 KRPLGDGVVTGYGTIDGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTGRPLIGIN 150
Query: 143 DSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEH 202
D GARIQEGV SL YS +F+ NILASGV+PQISLI+G AGG VYSPA+TDF MV+
Sbjct: 151 DGAGARIQEGVVSLGLYSRIFRNNILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQ 210
Query: 203 SSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLP 262
+S +FITGPDVIK+VT E+++ EELGGA TH + SG AH A S + DA VR LL +LP
Sbjct: 211 TSQMFITGPDVIKTVTGEEVTMEELGGAHTHMAKSGTAHYAASGEQDAFDYVRELLSYLP 270
Query: 263 MNNTQKPP---------------------------------------IRRCYDSREFFEI 283
NN+ P I R D EF EI
Sbjct: 271 PNNSTDAPRYQAAAPTGPIEENLTDEDLELDTLIPDSPNQPYDMHEVITRLLDD-EFLEI 329
Query: 284 QPKYAKNIIVGFARINGHSVGIVANQP 310
Q YA+NI+VGF RI+G VGIVANQP
Sbjct: 330 QAGYAQNIVVGFGRIDGRPVGIVANQP 356
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 19/109 (17%)
Query: 89 SVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGG-- 146
++V G G ++GR V I + T F G L +EK + + PIV L D G
Sbjct: 336 NIVVGFGRIDGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDCFNIPIVMLVDVPGFL 395
Query: 147 --------ARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGA 187
I+ G + L AY VP+I++I GGA
Sbjct: 396 PGTDQEYNGIIRRGAKLLYAY---------GEATVPKITVITRKAYGGA 435
>pdb|1X0U|A Chain A, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|B Chain B, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|C Chain C, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|D Chain D, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|E Chain E, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|F Chain F, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
Length = 522
Score = 294 bits (752), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 148/322 (45%), Positives = 204/322 (63%), Gaps = 33/322 (10%)
Query: 23 QIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSE 82
++ ++ A +GGG + IQ QH+KGKLTARER+ LL D G F E F R +F + +
Sbjct: 14 ELRQLKEKAYKGGGDERIQFQHSKGKLTARERLALLFDDGKFNEIMTFATTRATEFGLDK 73
Query: 83 KKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLN 142
++ GD VVTG G V+GRTVF ++QDFTV GGSL HA KI + + A+ GAP+VG+N
Sbjct: 74 QRFYGDGVVTGWGKVDGRTVFAYAQDFTVLGGSLGETHANKIVRAYELALKVGAPVVGIN 133
Query: 143 DSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEH 202
DSGGARIQEG SL Y +VF+ N++ASGV+PQI+++ GP AGGAVYSPA+TDF M++
Sbjct: 134 DSGGARIQEGALSLEGYGAVFKMNVMASGVIPQITIMAGPAAGGAVYSPALTDFIIMIKG 193
Query: 203 SS-YLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFL 261
+ Y+F+TGP++ K V E++S ++LGGA H + SGV H ++ +AI + LL +L
Sbjct: 194 DAYYMFVTGPEITKVVLGEEVSFQDLGGAVVHATKSGVVHFMVDSEQEAINLTKRLLSYL 253
Query: 262 PMNNTQKPP--------------------------------IRRCYDSREFFEIQPKYAK 289
P NN ++PP I + D+ EF E+ +A+
Sbjct: 254 PSNNMEEPPYIDTGDPADRDATGVEQIVPNDAAKPYNMREIIYKIVDNGEFLEVHKHWAQ 313
Query: 290 NIIVGFARINGHSVGIVANQPK 311
NIIVGFARI G+ VGIVAN P+
Sbjct: 314 NIIVGFARIAGNVVGIVANNPE 335
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 66/151 (43%), Gaps = 25/151 (16%)
Query: 89 SVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGG-- 146
+++ G + G V I + + FGGS+ A+K + + P++ L D+ G
Sbjct: 314 NIIVGFARIAGNVVGIVANNPEEFGGSIDIDAADKAARFIRFCDAFNIPLISLVDTPGYV 373
Query: 147 --------ARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAI----T 194
I+ G + L A+ A VP+I++I+ GGA + +I
Sbjct: 374 PGTDQEYKGIIRHGAKMLYAF---------AEATVPKITVIVRKSYGGAHIAMSIKSLGA 424
Query: 195 DFTFMVEHSSYLFITGPD-VIKSVTNEDISQ 224
D + ++ + +TGP+ ++ + ++I Q
Sbjct: 425 DLVYAWP-TAEIAVTGPEGAVRILYRKEIQQ 454
>pdb|1ON3|A Chain A, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|B Chain B, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|C Chain C, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|D Chain D, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|E Chain E, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|F Chain F, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON9|A Chain A, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|B Chain B, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|C Chain C, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|D Chain D, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|E Chain E, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|F Chain F, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
Length = 523
Score = 279 bits (714), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 146/321 (45%), Positives = 197/321 (61%), Gaps = 32/321 (9%)
Query: 23 QIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSE 82
Q+ R + GGG + ++ QH++GK TARER+ L DP +F E F +HR F M +
Sbjct: 18 QLAEQRQVIEAGGGERRVEKQHSQGKQTARERLNNLLDPHSFDEVGAFRKHRTTLFGMDK 77
Query: 83 KKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLN 142
+P D VVTGRG++ GR V SQDFTV GGS + K+ + M+QA+LTG P +
Sbjct: 78 AVVPADGVVTGRGTILGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFY 137
Query: 143 DSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEH 202
DSGGARIQEG++SL+ Y +F N+ SGVVPQI++I GPCAGGA YSPA+TDF M +
Sbjct: 138 DSGGARIQEGIDSLSGYGKMFFANVKLSGVVPQIAIIAGPCAGGASYSPALTDFIIMTK- 196
Query: 203 SSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLP 262
+++FITGP VIKSVT ED++ +ELGGA+ H ++SG H +D A + LL FLP
Sbjct: 197 KAHMFITGPQVIKSVTGEDVTADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFLP 256
Query: 263 MNNTQKP-------------------PI--RRCYDSR----------EFFEIQPKYAKNI 291
NNT++ PI ++ YD R ++ E++ YA N+
Sbjct: 257 QNNTEEASFVNPNNDVSPNTELRDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNL 316
Query: 292 IVGFARINGHSVGIVANQPKV 312
+ FAR+NG SVGIVANQP V
Sbjct: 317 VTAFARVNGRSVGIVANQPSV 337
>pdb|3U9R|B Chain B, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc), Beta Subunit
pdb|3U9S|B Chain B, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|D Chain D, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|F Chain F, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|H Chain H, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|J Chain J, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|L Chain L, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9T|B Chain B, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Free Enzyme
Length = 555
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 156/326 (47%), Gaps = 46/326 (14%)
Query: 23 QIDSMRAIA--LQGGGTKSIQAQHN-KGKLTARERVELLCDPGT-FVEYDMFMEHRCVDF 78
Q++++R + + GG + QA+H+ +GKL RER+ L DPG+ F+E H
Sbjct: 45 QVNALRTLLGRIHEGGGSAAQARHSARGKLLVRERINRLLDPGSPFLELSALAAH----- 99
Query: 79 NMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPI 138
+ +++ +V G G V G I D TV GG+ + +K + A+ P
Sbjct: 100 EVYGEEVAAAGIVAGIGRVEGVECMIVGNDATVKGGTYYPLTVKKHLRAQAIALENRLPC 159
Query: 139 VGLNDSGGA---RIQEGVESLAAYSSVF--QRNILASGVVPQISLILGPCAGGAVYSPAI 193
+ L DSGGA R E + +F Q N+ A G+ PQI++++G C G Y PA+
Sbjct: 160 IYLVDSGGANLPRQDEVFPDREHFGRIFFNQANMSARGI-PQIAVVMGSCTAGGAYVPAM 218
Query: 194 TDFTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQN 253
+D T MV + +F+ GP ++K+ T E +S EELGGA H VSGVA + +D A+
Sbjct: 219 SDETVMVREQATIFLAGPPLVKAATGEVVSAEELGGADVHCKVSGVADHYAEDDDHALAI 278
Query: 254 VR---------------------------HLLGFLPMNNTQKPPIR----RCYDSREFFE 282
R L G +P ++ Q +R R D EF E
Sbjct: 279 ARRCVANLNWRKQGQLQCRAPRAPLYPAEELYGVIPADSKQPYDVREVIARLVDGSEFDE 338
Query: 283 IQPKYAKNIIVGFARINGHSVGIVAN 308
+ + ++ GFA ++G+ + I+AN
Sbjct: 339 FKALFGTTLVCGFAHLHGYPIAILAN 364
>pdb|3GF3|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaconyl-Coa
pdb|3GF7|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Apoprotein
pdb|3GLM|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|C Chain C, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|D Chain D, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GMA|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaryl-Coa
pdb|3GMA|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaryl-Coa
Length = 588
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/326 (23%), Positives = 122/326 (37%), Gaps = 60/326 (18%)
Query: 36 GTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRG 95
G S + + +G+L+A +R+ L DPGT+ + FN K ++V G G
Sbjct: 49 GITSEEKLNERGQLSAMQRINALIDPGTWCPLNSL-------FNPENNKFGTTNIVNGLG 101
Query: 96 SVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARI--QEGV 153
V+G+ V+I + D G+ AE + + D A + P++ L + G Q+ V
Sbjct: 102 RVDGKWVYIVASDNKKMAGAWVPGQAENLIRCSDAAKMMHLPLIYLLNCSGVEFPNQDKV 161
Query: 154 --ESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVY---SPAI----TDFTFMVEHSS 204
+ F+ + L +P I I G G Y SP I D V +
Sbjct: 162 YPNRRGGGTPFFRNSELNQLGIPVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAG 221
Query: 205 YLFITGPD-----------VIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQN 253
L P + + N + G H +G + ND+ I
Sbjct: 222 ILSGMNPKGYIDDEAAEQIIAAQIENSKLKVPAPGSVPIHYDETGFFREVYQNDLGVIDG 281
Query: 254 VRHLLGFLPMNN-------------------------TQKPP------IRRCYDSREFFE 282
++ + +LP N QK P I R +D+ EF E
Sbjct: 282 IKKYISYLPAYNLEFFRVDTPKAPQLPAEDLYSIIPMNQKRPYDIYEVIARLFDNSEFSE 341
Query: 283 IQPKYAKNIIVGFARINGHSVGIVAN 308
+ Y ++ G A++NG VG++AN
Sbjct: 342 YKKGYGPEMVTGLAKVNGLLVGVIAN 367
>pdb|2F9I|B Chain B, Crystal Structure Of The Carboxyltransferase Subunit Of
Acc From Staphylococcus Aureus
pdb|2F9I|D Chain D, Crystal Structure Of The Carboxyltransferase Subunit Of
Acc From Staphylococcus Aureus
Length = 285
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 88/185 (47%), Gaps = 12/185 (6%)
Query: 49 LTARERVELLCDPGTFVEYDMFMEH-RCVDFNMSEKKIPGD--------SVVTGRGSVNG 99
LTA +R+E + D G+F E+D M +DF +KI D +VVTG ++G
Sbjct: 61 LTAYKRIEAISDEGSFTEFDKGMTSANPLDFPSYLEKIEKDQQKTGLKEAVVTGTAQLDG 120
Query: 100 RTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAY 159
+ D GS+ SV EKIC+I+D P + + SGGAR+QEG+ SL
Sbjct: 121 MKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFILFSASGGARMQEGIISLMQM 180
Query: 160 --SSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKSV 217
+SV + +G++ IS + P GG S A + E + + G VI+
Sbjct: 181 GKTSVSLKRHSDAGLL-YISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRVIEQT 239
Query: 218 TNEDI 222
NE +
Sbjct: 240 INEKL 244
>pdb|2F9Y|B Chain B, The Crystal Structure Of The Carboxyltransferase Subunit
Of Acc From Escherichia Coli
Length = 304
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 92/194 (47%), Gaps = 25/194 (12%)
Query: 48 KLTARERVELLCDPGTFVEYDMFMEHRCV----------DFNMSEKKIPG--DSVVTGRG 95
++TAR R+ L D G+ VE +E + V D S +K G D++V +G
Sbjct: 54 RMTARNRLHSLLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVMKG 113
Query: 96 SVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVES 155
++ G V + +F GGS+ SV + + ++QA+ P++ + SGGAR+QE + S
Sbjct: 114 TLYGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFSASGGARMQEALMS 173
Query: 156 L-------AAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI 208
L AA + + +R + P IS++ P GG S A+ + E + +
Sbjct: 174 LMQMAKTSAALAKMQERGL------PYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGF 227
Query: 209 TGPDVIKSVTNEDI 222
GP VI+ E +
Sbjct: 228 AGPRVIEQTVREKL 241
>pdb|1PIX|A Chain A, Crystal Structure Of The Carboxyltransferase Subunit Of
The Bacterial Ion Pump Glutaconyl-Coenzyme A
Decarboxylase
pdb|1PIX|B Chain B, Crystal Structure Of The Carboxyltransferase Subunit Of
The Bacterial Ion Pump Glutaconyl-Coenzyme A
Decarboxylase
Length = 587
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/346 (20%), Positives = 131/346 (37%), Gaps = 62/346 (17%)
Query: 15 DHLMRVRGQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHR 74
+ L ++ +I + A + G K+ + +G+LTA +R+E L +PG++ +
Sbjct: 29 EQLKKIEEEIHQLIKEAQEAG--KADADVNKRGELTALQRIEKLVEPGSWRPLNTL---- 82
Query: 75 CVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLT 134
FN K ++V G G VNG+ + + D G+ AE + + D A
Sbjct: 83 ---FNPQGNKNGSVAIVKGLGRVNGKWCVVVASDNKKLAGAWVPGQAECLLRASDTAKTL 139
Query: 135 GAPIVGLNDSGGARI--QEGV--ESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYS 190
P+V + + G + QE V + F+ L +P I I G G Y
Sbjct: 140 HVPLVYVLNCSGVKFDEQEKVYPNRRGGGTPFFRNAELNQLGIPVIVGIYGTNPAGGGYH 199
Query: 191 PAITDFTFMVEHSSYLFITGPDV-----------------IKSVTNEDISQEELGGAKTH 233
+I+ + + + + G + I + + E G H
Sbjct: 200 -SISPTVIIAHEKANMAVGGAGIMGGMNPKGHVDLEYANEIADMVDRTGKTEPPGAVDIH 258
Query: 234 TSVSGVAHNAFSNDIDAIQNVRHLLGFLPMNNTQ-------KPP---------------- 270
+ +G ++++ ++ ++ +G LP + + K P
Sbjct: 259 YTETGFMREVYASEEGVLEGIKKYVGMLPKYDPEFFRVDDPKAPAFPADDLYSMVPLNDK 318
Query: 271 --------IRRCYDSREFFEIQPKYAKNIIVGFARINGHSVGIVAN 308
I R +D+ E E + Y ++ G A++NG VG+VAN
Sbjct: 319 RAYDIYNVIARLFDNSELHEYKKGYGPEMVTGLAKVNGLLVGVVAN 364
>pdb|3FF6|A Chain A, Human Acc2 Ct Domain With Cp-640186
pdb|3FF6|B Chain B, Human Acc2 Ct Domain With Cp-640186
pdb|3FF6|C Chain C, Human Acc2 Ct Domain With Cp-640186
pdb|3FF6|D Chain D, Human Acc2 Ct Domain With Cp-640186
Length = 760
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 102/254 (40%), Gaps = 61/254 (24%)
Query: 100 RTVFIFSQDFTVFGGSLSSVHAEKICKIMDQA-----MLTGAPIVGLNDSGGARIQEGVE 154
+ +++ QD+T SL+SVH CK +++ M+T I+G +D G G
Sbjct: 169 KYLYLTPQDYTRIS-SLNSVH----CKHIEEGGESRYMITD--IIGKDDGLGVENLRGSG 221
Query: 155 SLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVI 214
+A SS+ I+ ISL+ G Y + VE +S++ +TG +
Sbjct: 222 MIAGESSLAYEEIVT------ISLVTCRAIGIGAYLVRLGQRVIQVE-NSHIILTGASAL 274
Query: 215 KSVTNEDI--SQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLPMNNTQKPPI- 271
V ++ S +LGG + +GV+H +D + + + L ++P +N PI
Sbjct: 275 NKVLGREVYTSNNQLGGVQI-MHYNGVSHITVPDDFEGVYTILEWLSYMPKDNHSPVPII 333
Query: 272 ---------------RRCYDSR-----------------------EFFEIQPKYAKNIIV 293
R YD R F EI +A+ ++
Sbjct: 334 TPTDPIDREIEFLPSRAPYDPRWMLAGRPHPTLKGTWQSGFFDHGSFKEIMAPWAQTVVT 393
Query: 294 GFARINGHSVGIVA 307
G AR+ G VG++A
Sbjct: 394 GRARLGGIPVGVIA 407
>pdb|3TDC|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 2
Length = 762
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 102/254 (40%), Gaps = 61/254 (24%)
Query: 100 RTVFIFSQDFTVFGGSLSSVHAEKICKIMDQA-----MLTGAPIVGLNDSGGARIQEGVE 154
+ +++ QD+T SL+SVH CK +++ M+T I+G +D G G
Sbjct: 171 KYLYLTPQDYTRIS-SLNSVH----CKHIEEGGESRYMITD--IIGKDDGLGVENLRGSG 223
Query: 155 SLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVI 214
+A SS+ I+ ISL+ G Y + VE +S++ +TG +
Sbjct: 224 MIAGESSLAYEEIVT------ISLVTCRAIGIGAYLVRLGQRVIQVE-NSHIILTGASAL 276
Query: 215 KSVTNEDI--SQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLPMNNTQKPPI- 271
V ++ S +LGG + +GV+H +D + + + L ++P +N PI
Sbjct: 277 NKVLGREVYTSNNQLGGVQI-MHYNGVSHITVPDDFEGVYTILEWLSYMPKDNHSPVPII 335
Query: 272 ---------------RRCYDSR-----------------------EFFEIQPKYAKNIIV 293
R YD R F EI +A+ ++
Sbjct: 336 TPTDPIDREIEFLPSRAPYDPRWMLAGRPHPTLKGTWQSGFFDHGSFKEIMAPWAQTVVT 395
Query: 294 GFARINGHSVGIVA 307
G AR+ G VG++A
Sbjct: 396 GRARLGGIPVGVIA 409
>pdb|4ASI|A Chain A, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|B Chain B, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|C Chain C, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|D Chain D, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|E Chain E, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|F Chain F, Crystal Structure Of Human Acaca C-Terminal Domain
Length = 769
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 102/256 (39%), Gaps = 65/256 (25%)
Query: 100 RTVFIFSQDFTVFGGSLSSVHAEKI-------CKIMDQAMLTGAPIVGLNDSGGARIQEG 152
R +++ QD+ +L+SVH E + KI D I+G + G G
Sbjct: 180 RYLYLTPQDYKRVS-ALNSVHCEHVEDEGESRYKITD--------IIGKEEGIGPENLRG 230
Query: 153 VESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPD 212
+A SS LA + ISL+ G Y + T VE +S+L +TG
Sbjct: 231 SGMIAGESS------LAYNEIITISLVTCRAIGIGAYLVRLGQRTIQVE-NSHLILTGAG 283
Query: 213 VIKSVTNEDI--SQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLP-------- 262
+ V ++ S +LGG + + +GV H +D + + V H L ++P
Sbjct: 284 ALNKVLGREVYTSNNQLGGIQIMHN-NGVTHCTVCDDFEGVFTVLHWLSYMPKSVHSSVP 342
Query: 263 MNNTQKP--------PIRRCYDSR-----------------------EFFEIQPKYAKNI 291
+ N++ P P + YD R F EI +A+ +
Sbjct: 343 LLNSKDPIDRIIEFVPTKTPYDPRWMLAGRPHPTQKGQWLSGFFDYGSFSEIMQPWAQTV 402
Query: 292 IVGFARINGHSVGIVA 307
+VG AR+ G VG+VA
Sbjct: 403 VVGRARLGGIPVGVVA 418
>pdb|2X24|A Chain A, Bovine Acc2 Ct Domain In Complex With Inhibitor
pdb|2X24|B Chain B, Bovine Acc2 Ct Domain In Complex With Inhibitor
Length = 793
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 100/253 (39%), Gaps = 51/253 (20%)
Query: 100 RTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAY 159
+ +++ QD+T SL+SVH CK +++ G + D G GVE+L
Sbjct: 195 KYLYLTPQDYTRIS-SLNSVH----CKHVEE---DGESRYVITDIIGKEEGLGVENLRGS 246
Query: 160 SSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKSVTN 219
+ + IS++ G Y + VE+S ++ +TG + V
Sbjct: 247 GMIAGETSQDYDEIVTISMVSCRALGIGAYLVRLGQRVIQVENS-HIILTGATALNKVLG 305
Query: 220 EDI--SQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLPMNN-------TQKPP 270
D+ S +LGG + +GV+H +D + + + L ++P +N T K P
Sbjct: 306 RDVYTSNNQLGGVQIMHH-NGVSHVTVPDDFEGVCTILEWLSYMPKDNRSPVPVVTPKDP 364
Query: 271 IRR---------CYDSR-----------------------EFFEIQPKYAKNIIVGFARI 298
I R YD R F EI +A+ ++ G AR+
Sbjct: 365 IDREIEFQPSRGPYDPRWLLAGRPHPTLKGSWQSGFFDQGSFKEIMVPWAQTVVTGRARL 424
Query: 299 NGHSVGIVANQPK 311
G VG++A + +
Sbjct: 425 GGIPVGVIAAETR 437
>pdb|2F9I|A Chain A, Crystal Structure Of The Carboxyltransferase Subunit Of
Acc From Staphylococcus Aureus
pdb|2F9I|C Chain C, Crystal Structure Of The Carboxyltransferase Subunit Of
Acc From Staphylococcus Aureus
Length = 327
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 90/227 (39%), Gaps = 48/227 (21%)
Query: 67 YDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQD---------FTVFGGSLS 117
+D FME D N + +++ G G +NGR V + Q + FG +
Sbjct: 89 FDSFMELHG-DRNFRDDP----AMIGGIGFLNGRAVTVIGQQRGKDTKDNIYRNFGMA-- 141
Query: 118 SVHAE---KICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNI-LASGVV 173
H E K ++M QA PI D+ GA + E S+ I +AS V
Sbjct: 142 --HPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKV 199
Query: 174 PQISLILGPCAGGAVYSPAITDFTFMVEHSSY-------------------------LFI 208
P I++++G G I + M+E+S+Y + I
Sbjct: 200 PVIAIVIGEGGSGGALGIGIANKVLMLENSTYSVISPEGAAALLWKDSNLAKIAAETMKI 259
Query: 209 TGPDVIKSVTNEDISQEELGGAKTHTSVSGVA-HNAFSNDIDAIQNV 254
T D+ + +D+ E LGGA +A +AF +D+++++
Sbjct: 260 TAHDIKQLGIIDDVISEPLGGAHKDIEQQALAIKSAFVAQLDSLESL 306
>pdb|3IPC|A Chain A, Structure Of Atu2422-Gaba F77a Mutant Receptor In Complex
With Leucine
Length = 356
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 15/85 (17%)
Query: 128 MDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVV--PQISLILG---- 181
MD + GAP+ G N + GA+IQ+G E A ++I A+G + QI ++LG
Sbjct: 1 MDVVIAVGAPLTGPNAAFGAQIQKGAEQAA-------KDINAAGGINGEQIKIVLGDDVS 53
Query: 182 -PCAGGAVYSPAITD-FTFMVEHSS 204
P G +V + + D F+V H++
Sbjct: 54 DPKQGISVANKFVADGVKFVVGHAN 78
>pdb|3IP5|A Chain A, Structure Of Atu2422-Gaba Receptor In Complex With Alanine
pdb|3IP6|A Chain A, Structure Of Atu2422-Gaba Receptor In Complex With Proline
pdb|3IP7|A Chain A, Structure Of Atu2422-Gaba Receptor In Complex With Valine
pdb|3IP9|A Chain A, Structure Of Atu2422-Gaba Receptor In Complex With Gaba
pdb|3IPA|A Chain A, Structure Of Atu2422-Gaba Receptor In Complex With Alanine
Length = 356
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 15/83 (18%)
Query: 128 MDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVV--PQISLILG---- 181
MD + GAP+ G N + GA+IQ+G E A ++I A+G + QI ++LG
Sbjct: 1 MDVVIAVGAPLTGPNAAFGAQIQKGAEQAA-------KDINAAGGINGEQIKIVLGDDVS 53
Query: 182 -PCAGGAVYSPAITD-FTFMVEH 202
P G +V + + D F+V H
Sbjct: 54 DPKQGISVANKFVADGVKFVVGH 76
>pdb|3TV5|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 1
pdb|3TV5|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 1
pdb|3TV5|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 1
pdb|3TVU|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 3
pdb|3TVU|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 3
pdb|3TVU|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 3
pdb|3TVW|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 4
pdb|3TVW|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 4
pdb|3TVW|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 4
pdb|3TZ3|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 2
pdb|3TZ3|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 2
pdb|3TZ3|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 2
Length = 769
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 40/140 (28%)
Query: 206 LFITGPDVIKSVTNEDI--SQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLPM 263
+ +TG + V ++ S +LGG + + +GV+H +D+ ++ + + ++P
Sbjct: 282 IILTGASALNKVLGREVYTSNLQLGGTQIMYN-NGVSHLTAVDDLAGVEKIVEWMSYVPA 340
Query: 264 NNTQKPPIRRCYDSRE-------------------------------------FFEIQPK 286
PI D+ + FFE
Sbjct: 341 KRNMPVPILETKDTWDRPVDFTPTNDETYDVRWMIEGRETESGFEYGLFDKGSFFETLSG 400
Query: 287 YAKNIIVGFARINGHSVGIV 306
+AK ++VG AR+ G +G++
Sbjct: 401 WAKGVVVGRARLGGIPLGVI 420
>pdb|3H0J|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 2
pdb|3H0J|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 2
pdb|3H0J|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 2
pdb|3H0S|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 7
pdb|3H0S|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 7
pdb|3H0S|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 7
pdb|3H0Q|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 3
pdb|3H0Q|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 3
pdb|3H0Q|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 3
Length = 769
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/207 (19%), Positives = 72/207 (34%), Gaps = 45/207 (21%)
Query: 138 IVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFT 197
I+G D G G +A +S +I I+L+ G Y +
Sbjct: 221 IIGSEDGLGVECLRGSGLIAGATSRAYHDIFT------ITLVTCRSVGIGAYLVRLGQRA 274
Query: 198 FMVEHSSYLFITGPDVIKSVTNE-DISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRH 256
VE + P + K + E S +LGG + + +GV+H +D+ ++ +
Sbjct: 275 IQVEGQPIILTGAPAINKMLGREVYTSNLQLGGTQIMYN-NGVSHLTAVDDLAGVEKIVE 333
Query: 257 LLGFLPMNNTQKPPIRRCYDSRE------------------------------------- 279
+ ++P PI D+ +
Sbjct: 334 WMSYVPAKRNMPVPILETKDTWDRPVDFTPTNDETYDVRWMIEGRETESGFEYGLFDKGS 393
Query: 280 FFEIQPKYAKNIIVGFARINGHSVGIV 306
FFE +AK ++VG AR+ G +G++
Sbjct: 394 FFETLSGWAKGVVVGRARLGGIPLGVI 420
>pdb|3PGQ|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of S.
Cerevisiae Acetyl Coa Carboxylase In Complex With
Pinoxaden
pdb|3PGQ|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of S.
Cerevisiae Acetyl Coa Carboxylase In Complex With
Pinoxaden
pdb|3PGQ|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of S.
Cerevisiae Acetyl Coa Carboxylase In Complex With
Pinoxaden
Length = 764
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 40/207 (19%), Positives = 72/207 (34%), Gaps = 45/207 (21%)
Query: 138 IVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFT 197
I+G D G G +A +S +I I+L+ G Y +
Sbjct: 218 IIGSEDGLGVECLRGSGLIAGATSRAYHDIFT------ITLVTCRSVGIGAYLVRLGQRA 271
Query: 198 FMVEHSSYLFITGPDVIKSVTNE-DISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRH 256
VE + P + K + E S +LGG + + +GV+H +D+ ++ +
Sbjct: 272 IQVEGQPIILTGAPAINKMLGREVYTSNLQLGGTQIMYN-NGVSHLTAVDDLAGVEKIVE 330
Query: 257 LLGFLPMNNTQKPPIRRCYDSRE------------------------------------- 279
+ ++P PI D+ +
Sbjct: 331 WMSYVPAKRNMPVPILETKDTWDRPVDFTPTNDETYDVRWMIEGRETESGFEYGLFDKGS 390
Query: 280 FFEIQPKYAKNIIVGFARINGHSVGIV 306
FFE +AK ++VG AR+ G +G++
Sbjct: 391 FFETLSGWAKGVVVGRARLGGIPLGVI 417
>pdb|1W2X|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Cp-640186
pdb|1W2X|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Cp-640186
pdb|1W2X|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Cp-640186
pdb|3K8X|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With
Tepraloxydim
pdb|3K8X|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With
Tepraloxydim
pdb|3K8X|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With
Tepraloxydim
Length = 758
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 40/207 (19%), Positives = 72/207 (34%), Gaps = 45/207 (21%)
Query: 138 IVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFT 197
I+G D G G +A +S +I I+L+ G Y +
Sbjct: 218 IIGSEDGLGVECLRGSGLIAGATSRAYHDIFT------ITLVTCRSVGIGAYLVRLGQRA 271
Query: 198 FMVEHSSYLFITGPDVIKSVTNE-DISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRH 256
VE + P + K + E S +LGG + + +GV+H +D+ ++ +
Sbjct: 272 IQVEGQPIILTGAPAINKMLGREVYTSNLQLGGTQIMYN-NGVSHLTAVDDLAGVEKIVE 330
Query: 257 LLGFLPMNNTQKPPIRRCYDSRE------------------------------------- 279
+ ++P PI D+ +
Sbjct: 331 WMSYVPAKRNMPVPILETKDTWDRPVDFTPTNDETYDVRWMIEGRETESGFEYGLFDKGS 390
Query: 280 FFEIQPKYAKNIIVGFARINGHSVGIV 306
FFE +AK ++VG AR+ G +G++
Sbjct: 391 FFETLSGWAKGVVVGRARLGGIPLGVI 417
>pdb|1UYR|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Diclofop
pdb|1UYR|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Diclofop
pdb|1UYT|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1UYT|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1UYT|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain
Length = 737
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 40/207 (19%), Positives = 72/207 (34%), Gaps = 45/207 (21%)
Query: 138 IVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFT 197
I+G D G G +A +S +I I+L+ G Y +
Sbjct: 212 IIGSEDGLGVECLRGSGLIAGATSRAYHDIFT------ITLVTCRSVGIGAYLVRLGQRA 265
Query: 198 FMVEHSSYLFITGPDVIKSVTNE-DISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRH 256
VE + P + K + E S +LGG + + +GV+H +D+ ++ +
Sbjct: 266 IQVEGQPIILTGAPAINKMLGREVYTSNLQLGGTQIMYN-NGVSHLTAVDDLAGVEKIVE 324
Query: 257 LLGFLPMNNTQKPPIRRCYDSRE------------------------------------- 279
+ ++P PI D+ +
Sbjct: 325 WMSYVPAKRNMPVPILETKDTWDRPVDFTPTNDETYDVRWMIEGRETESGFEYGLFDKGS 384
Query: 280 FFEIQPKYAKNIIVGFARINGHSVGIV 306
FFE +AK ++VG AR+ G +G++
Sbjct: 385 FFETLSGWAKGVVVGRARLGGIPLGVI 411
>pdb|1UYV|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain L1705i
V1967i Mutant
pdb|1UYV|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain L1705i
V1967i Mutant
pdb|1UYV|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain L1705i
V1967i Mutant
Length = 737
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 40/207 (19%), Positives = 72/207 (34%), Gaps = 45/207 (21%)
Query: 138 IVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFT 197
I+G D G G +A +S +I I+L+ G Y +
Sbjct: 212 IIGSEDGLGVECIRGSGLIAGATSRAYHDIFT------ITLVTCRSVGIGAYLVRLGQRA 265
Query: 198 FMVEHSSYLFITGPDVIKSVTNE-DISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRH 256
VE + P + K + E S +LGG + + +GV+H +D+ ++ +
Sbjct: 266 IQVEGQPIILTGAPAINKMLGREVYTSNLQLGGTQIMYN-NGVSHLTAVDDLAGVEKIVE 324
Query: 257 LLGFLPMNNTQKPPIRRCYDSRE------------------------------------- 279
+ ++P PI D+ +
Sbjct: 325 WMSYVPAKRNMPVPILETKDTWDRPVDFTPTNDETYDVRWMIEGRETESGFEYGLFDKGS 384
Query: 280 FFEIQPKYAKNIIVGFARINGHSVGIV 306
FFE +AK ++VG AR+ G +G++
Sbjct: 385 FFETLSGWAKGVVVGRARLGGIPLGVI 411
>pdb|1OD2|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD2|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD4|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD4|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD4|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain
Length = 805
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/207 (19%), Positives = 71/207 (34%), Gaps = 45/207 (21%)
Query: 138 IVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFT 197
I+G D G G +A +S +I I+L+ G Y +
Sbjct: 265 IIGSEDGLGVECLRGSGLIAGATSRAYHDIFT------ITLVTCRSVGIGAYLVRLGQRA 318
Query: 198 FMVEHSSYLFITGPDVIKSVTNE-DISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRH 256
VE + P + K + E S +LGG + + +GV+H +D+ ++ +
Sbjct: 319 IQVEGQPIILTGAPAINKXLGREVYTSNLQLGGTQIXYN-NGVSHLTAVDDLAGVEKIVE 377
Query: 257 LLGFLPMNNTQKPPIRRCYDSRE------------------------------------- 279
++P PI D+ +
Sbjct: 378 WXSYVPAKRNXPVPILETKDTWDRPVDFTPTNDETYDVRWXIEGRETESGFEYGLFDKGS 437
Query: 280 FFEIQPKYAKNIIVGFARINGHSVGIV 306
FFE +AK ++VG AR+ G +G++
Sbjct: 438 FFETLSGWAKGVVVGRARLGGIPLGVI 464
>pdb|1UYS|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Haloxyfop
pdb|1UYS|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Haloxyfop
pdb|1UYS|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Haloxyfop
Length = 737
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/207 (19%), Positives = 71/207 (34%), Gaps = 45/207 (21%)
Query: 138 IVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFT 197
I+G D G G +A +S +I I+L+ G Y +
Sbjct: 212 IIGSEDGLGVECLRGSGLIAGATSRAYHDIFT------ITLVTCRSVGIGAYLVRLGQRA 265
Query: 198 FMVEHSSYLFITGPDVIKSVTNE-DISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRH 256
VE + P + K + E S +LGG + + +GV+H +D+ ++ +
Sbjct: 266 IQVEGQPIILTGAPAINKXLGREVYTSNLQLGGTQIXYN-NGVSHLTAVDDLAGVEKIVE 324
Query: 257 LLGFLPMNNTQKPPIRRCYDSRE------------------------------------- 279
++P PI D+ +
Sbjct: 325 WXSYVPAKRNXPVPILETKDTWDRPVDFTPTNDETYDVRWXIEGRETESGFEYGLFDKGS 384
Query: 280 FFEIQPKYAKNIIVGFARINGHSVGIV 306
FFE +AK ++VG AR+ G +G++
Sbjct: 385 FFETLSGWAKGVVVGRARLGGIPLGVI 411
>pdb|2OLS|A Chain A, The Crystal Structure Of The Phosphoenolpyruvate Synthase
From Neisseria Meningitidis
Length = 794
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 142 NDSGGARIQEGVESLAAYSSV--------FQRNILASGVVPQISLILGPCAGGAVYSPAI 193
+DSG + + +++ + Y V N++ V P + P PAI
Sbjct: 196 SDSGASGVMFTLDTESGYDQVVFVTSSYGLGENVVQGAVNPDEFYVFKPTLKAG--KPAI 253
Query: 194 TDFTFMVEHSSYLFITGPDVIKSVTNEDISQEELGG-AKTHTSVSGVAHNAFS 245
T +H +F + KSVTN D+ +E+ + T ++ +AH A +
Sbjct: 254 LRKTMGSKHIKMIFTDKAEAGKSVTNVDVPEEDRNRFSITDEEITELAHYALT 306
>pdb|3KZW|A Chain A, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|B Chain B, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|C Chain C, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|D Chain D, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|E Chain E, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|F Chain F, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|G Chain G, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|H Chain H, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|I Chain I, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|J Chain J, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|K Chain K, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|L Chain L, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
Length = 515
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 75 CVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFT---VFGGSLSSVHAEKICKIMDQA 131
C + ++E + D V T +++G TV + + D V ++ + + IMD A
Sbjct: 335 CAENMINEASMKPDDVFT---ALSGETVEVMNTDAEGRLVLADAVFYANQYQPSVIMDFA 391
Query: 132 MLTGAPIVGLNDSGGARIQ 150
LTGA IV L D A +
Sbjct: 392 TLTGAAIVALGDDKAAAFE 410
>pdb|2F9Y|A Chain A, The Crystal Structure Of The Carboxyltransferase Subunit
Of Acc From Escherichia Coli
Length = 339
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 123 KICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNI--LASGVVPQISLIL 180
K ++M A PI+ D+ GA G E S RN+ ++ VP + ++
Sbjct: 162 KALRLMQMAERFKMPIITFIDTPGAYPGVGAEE-RGQSEAIARNLREMSRLGVPVVCTVI 220
Query: 181 GPCAGGAVYSPAITDFTFMVEHSSYLFITGPD-----VIKSVTNEDISQEELG 228
G G + + D M+++S+Y I+ P+ + KS ++ E +G
Sbjct: 221 GEGGSGGALAIGVGDKVNMLQYSTYSVIS-PEGCASILWKSADKAPLAAEAMG 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,243,761
Number of Sequences: 62578
Number of extensions: 369757
Number of successful extensions: 842
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 750
Number of HSP's gapped (non-prelim): 83
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)