BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11283
(314 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, mitochondrial OS=Homo sapiens
GN=PCCB PE=1 SV=3
Length = 539
Score = 436 bits (1122), Expect = e-122, Method: Compositional matrix adjust.
Identities = 208/329 (63%), Positives = 250/329 (75%), Gaps = 34/329 (10%)
Query: 20 VRGQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFN 79
V +I++ R AL GGG + I AQH +GKLTARER+ LL DPG+FVE DMF+EHRC DF
Sbjct: 35 VNERIENKRRTALLGGGQRRIDAQHKRGKLTARERISLLLDPGSFVESDMFVEHRCADFG 94
Query: 80 MS--EKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAP 137
M+ + K PGDSVVTGRG +NGR V++FSQDFTVFGGSLS HA+KICKIMDQA+ GAP
Sbjct: 95 MAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAITVGAP 154
Query: 138 IVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFT 197
++GLNDSGGARIQEGVESLA Y+ +F RN+ ASGV+PQISLI+GPCAGGAVYSPA+TDFT
Sbjct: 155 VIGLNDSGGARIQEGVESLAGYADIFLRNVTASGVIPQISLIMGPCAGGAVYSPALTDFT 214
Query: 198 FMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHL 257
FMV+ +SYLFITGPDV+KSVTNED++QEELGGAKTHT++SGVAH AF ND+DA+ N+R
Sbjct: 215 FMVKDTSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTMSGVAHRAFENDVDALCNLRDF 274
Query: 258 LGFLPMNNTQKPPIRRCY--------------------------------DSREFFEIQP 285
+LP+++ P+R C+ D REFFEI P
Sbjct: 275 FNYLPLSSQDPAPVRECHDPSDRLVPELDTIVPLESTKAYNMVDIIHSVVDEREFFEIMP 334
Query: 286 KYAKNIIVGFARINGHSVGIVANQPKVAA 314
YAKNIIVGFAR+NG +VGIV NQPKVA+
Sbjct: 335 NYAKNIIVGFARMNGRTVGIVGNQPKVAS 363
>sp|P79384|PCCB_PIG Propionyl-CoA carboxylase beta chain, mitochondrial OS=Sus scrofa
GN=PCCB PE=2 SV=1
Length = 539
Score = 435 bits (1118), Expect = e-121, Method: Compositional matrix adjust.
Identities = 207/329 (62%), Positives = 250/329 (75%), Gaps = 34/329 (10%)
Query: 20 VRGQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFN 79
V +I++ R AL GGG + I +QH +GKLTARER+ LL DPG+F+E DMF+EHRC DF
Sbjct: 35 VNERIENKRQAALLGGGQRRIDSQHKRGKLTARERISLLLDPGSFIESDMFVEHRCADFG 94
Query: 80 MS--EKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAP 137
M+ + K PGDSVVTGRG +NGR V++FSQDFTVFGGSLS HA+KICKIMDQAM GAP
Sbjct: 95 MAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAMTVGAP 154
Query: 138 IVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFT 197
++GLNDSGGARIQEGVESLA Y+ +F RN+ ASGV+PQISLI+GPCAGGAVYSPA+TDFT
Sbjct: 155 VIGLNDSGGARIQEGVESLAGYADIFLRNVSASGVIPQISLIMGPCAGGAVYSPALTDFT 214
Query: 198 FMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHL 257
FMV+ +SYLFITGPDV+KSVTNED++QEELGGA+THT++SGVAH AF ND+DA+ N+R
Sbjct: 215 FMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRAFDNDVDALCNLREF 274
Query: 258 LGFLPMNNTQKPPIRRCY--------------------------------DSREFFEIQP 285
+LP++N PIR C+ D R+FFEI P
Sbjct: 275 FNYLPLSNQDPAPIRECHDPSDRLVPELDTVVPLESTRAYDMVDIIYSIVDERDFFEIMP 334
Query: 286 KYAKNIIVGFARINGHSVGIVANQPKVAA 314
YAKNIIVGFAR+NG +VGIV NQPKVA+
Sbjct: 335 NYAKNIIVGFARMNGRTVGIVGNQPKVAS 363
>sp|Q2TBR0|PCCB_BOVIN Propionyl-CoA carboxylase beta chain, mitochondrial OS=Bos taurus
GN=PCCB PE=2 SV=1
Length = 539
Score = 434 bits (1117), Expect = e-121, Method: Compositional matrix adjust.
Identities = 207/329 (62%), Positives = 249/329 (75%), Gaps = 34/329 (10%)
Query: 20 VRGQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFN 79
V +I++ R AL GGG + I AQH +GKLTARER+ LL DPG+FVE DMF+EHRC DF
Sbjct: 35 VNERIENKRQAALLGGGQRRIDAQHKRGKLTARERISLLLDPGSFVESDMFVEHRCADFG 94
Query: 80 MS--EKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAP 137
M+ + K PGDSVVTGRG +NGR V++FSQDFTVFGGSLS HA+KICKIMDQA+ GAP
Sbjct: 95 MAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQALTVGAP 154
Query: 138 IVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFT 197
++GLNDSGGARIQEGVESLA Y+ +F RN+ ASGV+PQISLI+GPCAGGAVYSPA+TDFT
Sbjct: 155 VIGLNDSGGARIQEGVESLAGYADIFLRNVTASGVIPQISLIMGPCAGGAVYSPALTDFT 214
Query: 198 FMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHL 257
FMV+ +SYLFITGPDV+KSVTNED++QEELGGA+THT++SGVAH AF ND+DA+ N+R
Sbjct: 215 FMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRAFENDVDALCNLREF 274
Query: 258 LGFLPMNNTQKPPIRRCY--------------------------------DSREFFEIQP 285
+LP++N P+ C+ D REFFEI P
Sbjct: 275 FNYLPLSNQDPAPVLECHDPSDRLVPELDTIVPLESTKAYNMVDIIHAVVDEREFFEIMP 334
Query: 286 KYAKNIIVGFARINGHSVGIVANQPKVAA 314
YAKNIIVGFAR+NG +VGIV NQPKVA+
Sbjct: 335 NYAKNIIVGFARMNGRTVGIVGNQPKVAS 363
>sp|Q99MN9|PCCB_MOUSE Propionyl-CoA carboxylase beta chain, mitochondrial OS=Mus musculus
GN=Pccb PE=1 SV=2
Length = 541
Score = 434 bits (1115), Expect = e-121, Method: Compositional matrix adjust.
Identities = 207/329 (62%), Positives = 250/329 (75%), Gaps = 34/329 (10%)
Query: 20 VRGQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFN 79
V+ +ID+ R AL GGG + I AQH +GKLTARER+ LL DPG+F+E DMF+EHRC DF
Sbjct: 37 VKERIDNKRHAALLGGGQRRIDAQHKRGKLTARERISLLLDPGSFMESDMFVEHRCADFG 96
Query: 80 MS--EKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAP 137
M+ + K PGDSVVTGRG +NGR V++FSQDFTVFGGSLS HA+KICKIMDQA+ GAP
Sbjct: 97 MAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAITVGAP 156
Query: 138 IVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFT 197
++GLNDSGGARIQEGVESLA Y+ +F RN+ ASGV+PQISLI+GPCAGGAVYSPA+TDFT
Sbjct: 157 VIGLNDSGGARIQEGVESLAGYADIFLRNVTASGVIPQISLIMGPCAGGAVYSPALTDFT 216
Query: 198 FMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHL 257
FMV+ +SYLFITGP+V+KSVTNED++QE+LGGAKTHT+VSGVAH AF ND+DA+ N+R
Sbjct: 217 FMVKDTSYLFITGPEVVKSVTNEDVTQEQLGGAKTHTTVSGVAHRAFDNDVDALCNLREF 276
Query: 258 LGFLPMNNTQKPPIRRCY--------------------------------DSREFFEIQP 285
FLP+++ PIR C+ D REFFEI P
Sbjct: 277 FNFLPLSSQDPAPIRECHDPSDRLVPELDTVVPLESSKAYNMLDIIHAVIDEREFFEIMP 336
Query: 286 KYAKNIIVGFARINGHSVGIVANQPKVAA 314
YAKNI+VGFAR+NG +VGIV NQP VA+
Sbjct: 337 SYAKNIVVGFARMNGRTVGIVGNQPNVAS 365
>sp|P07633|PCCB_RAT Propionyl-CoA carboxylase beta chain, mitochondrial OS=Rattus
norvegicus GN=Pccb PE=2 SV=1
Length = 541
Score = 430 bits (1105), Expect = e-120, Method: Compositional matrix adjust.
Identities = 205/329 (62%), Positives = 248/329 (75%), Gaps = 34/329 (10%)
Query: 20 VRGQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFN 79
V +I++ R AL GGG + I AQH +GKLTARER+ LL DPG+F+E DMF+EHRC DF
Sbjct: 37 VNERIENKRHAALLGGGQRRIDAQHKRGKLTARERISLLLDPGSFLESDMFVEHRCADFG 96
Query: 80 MS--EKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAP 137
M+ + K PGDSVVTGRG +NGR V++FSQDFTVFGGSLS HA+KICKIMDQA+ GAP
Sbjct: 97 MAAEKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAITVGAP 156
Query: 138 IVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFT 197
++GLNDSGGARIQEGVESLA Y+ +F RN+ ASGV+PQISLI+GPCAGGAVYSPA+TDFT
Sbjct: 157 VIGLNDSGGARIQEGVESLAGYADIFLRNVTASGVIPQISLIMGPCAGGAVYSPALTDFT 216
Query: 198 FMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHL 257
FMV+ +SYLFITGP+ +KSVTNED++QE+LGGAKTHT+VSGVAH AF ND+DA+ N+R
Sbjct: 217 FMVKDTSYLFITGPEFVKSVTNEDVTQEQLGGAKTHTTVSGVAHRAFDNDVDALCNLREF 276
Query: 258 LGFLPMNNTQKPPIRRCY--------------------------------DSREFFEIQP 285
L FLP++N IR C+ D REFFEI P
Sbjct: 277 LNFLPLSNQDPASIRECHDPSDRLVPELDTVVPLESSKAYNMLDIIHAVIDEREFFEIMP 336
Query: 286 KYAKNIIVGFARINGHSVGIVANQPKVAA 314
YAKNI++GFAR+NG +VGIV NQP VA+
Sbjct: 337 NYAKNIVIGFARMNGRTVGIVGNQPNVAS 365
>sp|P53003|PCCB_SACEN Propionyl-CoA carboxylase beta chain OS=Saccharopolyspora erythraea
(strain NRRL 23338) GN=pccB PE=3 SV=2
Length = 546
Score = 323 bits (829), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 165/320 (51%), Positives = 204/320 (63%), Gaps = 40/320 (12%)
Query: 31 ALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSV 90
A+ G +++ QH KGK TARER+++L D G+FVE D HR +F M + GD V
Sbjct: 35 AVHAGSERAVAKQHAKGKRTARERIDMLLDEGSFVELDEHARHRSTNFGMDADRPYGDGV 94
Query: 91 VTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQ 150
VTG G+V+GR V +FSQDFTVFGGSL V EKI K+MD AM TG P+VG+NDSGGARIQ
Sbjct: 95 VTGWGTVDGRRVCVFSQDFTVFGGSLGEVFGEKIVKVMDLAMKTGCPLVGINDSGGARIQ 154
Query: 151 EGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITG 210
EGV +L Y+ +F+RN ASGV+PQISLI+GPCAGGAVYSPAITDFT MV+ +S++FITG
Sbjct: 155 EGVAALGLYAEIFKRNTHASGVIPQISLIMGPCAGGAVYSPAITDFTVMVDQTSHMFITG 214
Query: 211 PDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLPMNNTQKPP 270
PDVIK+VT ED+S E+LGGA+TH SG AH +++ DAI V+ LL FLP NN P
Sbjct: 215 PDVIKTVTGEDVSFEDLGGARTHNERSGNAHYLATDEDDAISYVKELLSFLPSNNLSSSP 274
Query: 271 ----------------------------------------IRRCYDSREFFEIQPKYAKN 290
I R D EF E+ +A N
Sbjct: 275 VFPGAEVEEGSVADGVGDADLELDALVPDSPNQPYDMREVITRLVDEGEFLEVSALFAPN 334
Query: 291 IIVGFARINGHSVGIVANQP 310
++ GF RI G SVG+VANQP
Sbjct: 335 MLCGFGRIEGASVGVVANQP 354
>sp|P96885|PCC5_MYCTU Probable propionyl-CoA carboxylase beta chain 5 OS=Mycobacterium
tuberculosis GN=accD5 PE=1 SV=1
Length = 548
Score = 308 bits (789), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 163/327 (49%), Positives = 204/327 (62%), Gaps = 40/327 (12%)
Query: 23 QIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSE 82
++ R +L G +++ H KGKLTARER+ L D +FVE D +HR +FN+ E
Sbjct: 31 ELHKRREESLHPVGEDAVEKVHAKGKLTARERIYALLDEDSFVELDALAKHRSTNFNLGE 90
Query: 83 KKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLN 142
K+ GD VVTG G+++GR V IFSQD TVFGGSL V+ EKI K+ + A+ TG P++G+N
Sbjct: 91 KRPLGDGVVTGYGTIDGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTGRPLIGIN 150
Query: 143 DSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEH 202
D GARIQEGV SL YS +F+ NILASGV+PQISLI+G AGG VYSPA+TDF MV+
Sbjct: 151 DGAGARIQEGVVSLGLYSRIFRNNILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQ 210
Query: 203 SSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLP 262
+S +FITGPDVIK+VT E+++ EELGGA TH + SG AH A S + DA VR LL +LP
Sbjct: 211 TSQMFITGPDVIKTVTGEEVTMEELGGAHTHMAKSGTAHYAASGEQDAFDYVRELLSYLP 270
Query: 263 MNNTQKPP---------------------------------------IRRCYDSREFFEI 283
NN+ P I R D EF EI
Sbjct: 271 PNNSTDAPRYQAAAPTGPIEENLTDEDLELDTLIPDSPNQPYDMHEVITRLLDD-EFLEI 329
Query: 284 QPKYAKNIIVGFARINGHSVGIVANQP 310
Q YA+NI+VGF RI+G VGIVANQP
Sbjct: 330 QAGYAQNIVVGFGRIDGRPVGIVANQP 356
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 19/109 (17%)
Query: 89 SVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGG-- 146
++V G G ++GR V I + T F G L +EK + + PIV L D G
Sbjct: 336 NIVVGFGRIDGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDCFNIPIVMLVDVPGFL 395
Query: 147 --------ARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGA 187
I+ G + L AY VP+I++I GGA
Sbjct: 396 PGTDQEYNGIIRRGAKLLYAY---------GEATVPKITVITRKAYGGA 435
>sp|P54541|PCCB_BACSU Putative propionyl-CoA carboxylase beta chain OS=Bacillus subtilis
(strain 168) GN=yqjD PE=3 SV=2
Length = 507
Score = 306 bits (783), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 159/326 (48%), Positives = 207/326 (63%), Gaps = 38/326 (11%)
Query: 14 VDHLMRVRGQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEH 73
+DH R Q A +GGG + + Q KGKLTARER+ L D +F+E FME
Sbjct: 5 MDHFYTKRKQ-------AEEGGGREKLAQQRQKGKLTARERIIFLLDQDSFIELHPFMES 57
Query: 74 RCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAML 133
+ + E+++ GD VVTG G+++GR+V++F+QDFTV+GG+L HA KIC +MD A
Sbjct: 58 QVL---TREQRMLGDGVVTGYGTIDGRSVYVFAQDFTVYGGALGETHARKICALMDLAAK 114
Query: 134 TGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAI 193
API+GLNDSGGARIQEGV SL Y +F RN+L SGV+PQIS+ILGPCAGGAVYSPA+
Sbjct: 115 NKAPIIGLNDSGGARIQEGVLSLDGYGHIFYRNVLYSGVIPQISVILGPCAGGAVYSPAL 174
Query: 194 TDFTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQN 253
TDF FM E + +FITGP VI+ VT E + E LGGA H +VSG AH + + + +
Sbjct: 175 TDFIFMAEQTGRMFITGPKVIEKVTGEQVDAESLGGAGIHNAVSGNAHFSGHTEKEVLTG 234
Query: 254 VRHLLGFLPMN-----------------------NTQKP-----PIRRCYDSREFFEIQP 285
VR LL +LP+N +T KP IR D + FFEIQP
Sbjct: 235 VRKLLSYLPLNGRTTEPKPEKEASRPLLNRLVPADTTKPYDVRKVIRELADPQSFFEIQP 294
Query: 286 KYAKNIIVGFARINGHSVGIVANQPK 311
+AKNI++GFAR+ ++GIVA+QPK
Sbjct: 295 FFAKNIVIGFARLGEKAIGIVASQPK 320
>sp|P53002|PCCB_MYCLE Probable propionyl-CoA carboxylase beta chain 5 OS=Mycobacterium
leprae (strain TN) GN=accD5 PE=3 SV=1
Length = 549
Score = 296 bits (757), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 155/319 (48%), Positives = 191/319 (59%), Gaps = 39/319 (12%)
Query: 31 ALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSV 90
AL G + + H KGK TARER+ L D +FVE D HR +F + E + GD V
Sbjct: 39 ALHPVGAAAFEKVHAKGKFTARERIYALLDDDSFVELDALARHRSTNFGLGENRPVGDGV 98
Query: 91 VTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQ 150
VTG G+++GR V IFSQD TVFGGSL V+ EKI K+ + A+ TG P++G+ND GARIQ
Sbjct: 99 VTGYGTIDGRDVCIFSQDVTVFGGSLGEVYGEKIVKVQELAIKTGRPLIGINDGAGARIQ 158
Query: 151 EGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITG 210
EGV SL YS +F+ NILASGV+PQISLI+G AGG VYSPA+TDF MV+ +S +FITG
Sbjct: 159 EGVVSLGLYSRIFRNNILASGVIPQISLIMGAAAGGHVYSPALTDFVVMVDQTSQMFITG 218
Query: 211 PDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLPMNNTQKPP 270
PDVIK+VT ED++ EELGGA TH + SG AH S + DA VR +L +LP NN P
Sbjct: 219 PDVIKTVTGEDVTMEELGGAHTHMAKSGTAHYVASGEQDAFDWVRDVLSYLPSNNFTDAP 278
Query: 271 ---------------------------------------IRRCYDSREFFEIQPKYAKNI 291
+ R D EF E+Q YA NI
Sbjct: 279 RYSKPVPHGSIEDNLTAKDLELDTLIPDSPNQPYDMHEVVTRLLDEEEFLEVQAGYATNI 338
Query: 292 IVGFARINGHSVGIVANQP 310
+VG RI+ VGIVANQP
Sbjct: 339 VVGLGRIDDRPVGIVANQP 357
>sp|Q8GBW6|12S_PROFR Methylmalonyl-CoA carboxyltransferase 12S subunit
OS=Propionibacterium freudenreichii subsp. shermanii
PE=1 SV=3
Length = 611
Score = 280 bits (717), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 146/321 (45%), Positives = 197/321 (61%), Gaps = 32/321 (9%)
Query: 23 QIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSE 82
Q+ R + GGG + ++ QH++GK TARER+ L DP +F E F +HR F M +
Sbjct: 19 QLAEQRQVIEAGGGERRVEKQHSQGKQTARERLNNLLDPHSFDEVGAFRKHRTTLFGMDK 78
Query: 83 KKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLN 142
+P D VVTGRG++ GR V SQDFTV GGS + K+ + M+QA+LTG P +
Sbjct: 79 AVVPADGVVTGRGTILGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFY 138
Query: 143 DSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEH 202
DSGGARIQEG++SL+ Y +F N+ SGVVPQI++I GPCAGGA YSPA+TDF M +
Sbjct: 139 DSGGARIQEGIDSLSGYGKMFFANVKLSGVVPQIAIIAGPCAGGASYSPALTDFIIMTKK 198
Query: 203 SSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLP 262
+++FITGP VIKSVT ED++ +ELGGA+ H ++SG H +D A + LL FLP
Sbjct: 199 -AHMFITGPQVIKSVTGEDVTADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFLP 257
Query: 263 MNNTQKP-------------------PI--RRCYDSR----------EFFEIQPKYAKNI 291
NNT++ PI ++ YD R ++ E++ YA N+
Sbjct: 258 QNNTEEASFVNPNNDVSPNTELRDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNL 317
Query: 292 IVGFARINGHSVGIVANQPKV 312
+ FAR+NG SVGIVANQP V
Sbjct: 318 VTAFARVNGRSVGIVANQPSV 338
>sp|O31825|YNGE_BACSU Uncharacterized carboxylase YngE OS=Bacillus subtilis (strain 168)
GN=yngE PE=3 SV=2
Length = 511
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/314 (35%), Positives = 152/314 (48%), Gaps = 41/314 (13%)
Query: 33 QGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVT 92
+GG K Q+ KGKL RER+ LL D +E F E C MS+ +P D VVT
Sbjct: 18 KGGAEKYHQSNREKGKLFVRERLSLLFDDDIELEDAFFAE--C----MSDG-LPADGVVT 70
Query: 93 GRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEG 152
G + G+TV + + D TV GS + EKI +I + A P++ L DS GARI +
Sbjct: 71 AIGKIGGQTVCVMANDSTVKAGSWGAKTVEKIIRIQEIAEKLNCPLIYLVDSAGARITDQ 130
Query: 153 VESLAAYS---SVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFIT 209
+ +F + SG +PQI L+ GP A G Y PA D MV+ ++ +++
Sbjct: 131 INVFPGRRGAGRIFYNQVKLSGRIPQICLLFGPSAAGGAYIPAFCDIVVMVDGNASMYLG 190
Query: 210 GPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLPMNNTQKP 269
P + + V E +S EE+GGA+ H S+SG + +AIQ VR L + P N +K
Sbjct: 191 SPRMAEMVIGEKVSLEEMGGARMHCSISGCGDILAETEEEAIQLVRAYLSYFPANFQEKA 250
Query: 270 PI-------------------------------RRCYDSREFFEIQPKYAKNIIVGFARI 298
PI R D FFEI+ +A ++ G ARI
Sbjct: 251 PIHEKRPPKHFETPLADVIPQNQNAPFDMHELIERVIDEDSFFEIKALFAPELLTGLARI 310
Query: 299 NGHSVGIVANQPKV 312
+G VGIVANQPKV
Sbjct: 311 HGQPVGIVANQPKV 324
>sp|Q06101|PCCB_RHOER Propionyl-CoA carboxylase beta chain OS=Rhodococcus erythropolis
GN=pccB PE=3 SV=1
Length = 476
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 146/287 (50%), Gaps = 46/287 (16%)
Query: 54 RVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFG 113
R+E L DPGT V + +K V+ G+++G + D TV G
Sbjct: 22 RLENLFDPGT-----------TVPLHARDKS----GVLAASGNIDGVRTIAYCSDATVMG 66
Query: 114 GSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVV 173
G++ + + K +D A+ +PIVGL SGGAR+ EGVE+L A VF+ + ASG++
Sbjct: 67 GAMGVDGCKHLVKAIDTAIEEESPIVGLWHSGGARLAEGVEALHAVGLVFEAMVRASGLI 126
Query: 174 PQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTH 233
PQIS++LG AGGA Y PA+TD M +F+TGPDV++SVT E + LGG TH
Sbjct: 127 PQISVVLGFAAGGAAYGPALTDVVIMAP-EGRVFVTGPDVVRSVTGEQVDMVSLGGPDTH 185
Query: 234 TSVSGVAHNAFSNDIDAIQNVRHL----------------LGFLPMNNTQKPPIRRCYDS 277
T SGVAH A ++ DA+ R L LG + +R YD
Sbjct: 186 TKKSGVAHIAAHDEADALHRARRLVSMMCEQGEFDQRAAELGDSDLRAMMPASAKRAYDV 245
Query: 278 R--------------EFFEIQPKYAKNIIVGFARINGHSVGIVANQP 310
R F E+Q YA++I+ GF R+ G +VG++AN P
Sbjct: 246 RPIVHEMLDNVEGESSFEELQGNYARSIVTGFGRMAGRTVGVIANNP 292
>sp|P34385|MCCB_CAEEL Probable methylcrotonoyl-CoA carboxylase beta chain, mitochondrial
OS=Caenorhabditis elegans GN=F02A9.4 PE=2 SV=1
Length = 608
Score = 145 bits (365), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 154/312 (49%), Gaps = 40/312 (12%)
Query: 33 QGGGTKSIQAQHNKGKLTARERVELLCDPGT-FVEYDMFMEHRCVDFNMSEKKIPGDSVV 91
Q GG K+++ ++GK+ ARER++ + D G+ F+E+ + ++++P ++
Sbjct: 110 QAGGEKAVKLHRSRGKMLARERIDGIVDAGSPFIEFSQLAGYEM----YGKEEVPSGGIL 165
Query: 92 TGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQE 151
TG G V+GR I + D TV GG+ + +K + + A P + L DSGGA +
Sbjct: 166 TGVGIVSGRVCVIVANDATVKGGTYYPITVKKHLRAQEIARENKLPCIYLVDSGGANLPR 225
Query: 152 GVESLA---AYSSVF-QRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLF 207
+ A + +F + ++S +PQ+++++G C G Y PA++D +V+ + +F
Sbjct: 226 QADIFADSQHFGRIFYNQATMSSEGIPQLAVVMGSCTAGGAYVPAMSDQAIIVKGTGTVF 285
Query: 208 ITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLP----- 262
+ GP ++K+ T E+IS EELGGA H SGV ND A+ R + LP
Sbjct: 286 LGGPPLVKAATGEEISAEELGGADLHCGESGVTDYYAHNDKHALYLARSCIAGLPPVEEH 345
Query: 263 --MNNTQKPP--------------IRRCYDSRE----------FFEIQPKYAKNIIVGFA 296
N P +++ YD RE F E + +Y + ++ GFA
Sbjct: 346 MTFNPNADEPLYPAEEIYGIVGSNLKKTYDVREVIARIVDGSRFHEFKERYGETLVTGFA 405
Query: 297 RINGHSVGIVAN 308
I G VGI+AN
Sbjct: 406 TIYGQRVGILAN 417
>sp|Q9V9A7|MCCB_DROME Probable methylcrotonoyl-CoA carboxylase beta chain, mitochondrial
OS=Drosophila melanogaster GN=l(2)04524 PE=2 SV=1
Length = 578
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/340 (28%), Positives = 155/340 (45%), Gaps = 58/340 (17%)
Query: 22 GQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGT-FVEYDMFMEHRCVDFNM 80
G + + + L+GGG K+I+ ++GKL ARER+ LL D G+ F+E H
Sbjct: 53 GDLRNFTSQVLKGGGQKAIERHTSRGKLLARERINLLLDKGSPFLELSALAGHEL----Y 108
Query: 81 SEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVG 140
E+ + +VTG G V G + + D TV GGS + +K + + A P +
Sbjct: 109 GEEVVNSGGIVTGVGRVCGTECLVVANDATVKGGSYYPITVKKHLRAQEIAQENRLPCIY 168
Query: 141 LNDSGGARIQEGVESLAA---YSSVF--QRNILASGVVPQISLILGPCAGGAVYSPAITD 195
L DSGGA + + + +F Q N+ A G+ PQI++++G C G Y PA+ D
Sbjct: 169 LVDSGGANLPRQADVFPDKLHFGRIFYNQANMSAQGI-PQIAVVMGSCTAGGAYVPAMAD 227
Query: 196 FTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVR 255
+ +V+ +F+ GP ++K+ T E++S E+LGGA H SGV + +D A+ R
Sbjct: 228 ESIIVKKQGTIFLAGPPLVKAATGEEVSAEDLGGADLHCKTSGVTDHYALDDEHALYLAR 287
Query: 256 HLLGFLPMN-----------------NTQKPP---------------------------- 270
++ L ++ T PP
Sbjct: 288 QIVSNLNLSATNSYNDQLMHSSQVNFQTATPPSAVEEPRYDAEELYGIVGPNLTKSFDVR 347
Query: 271 --IRRCYDSREFFEIQPKYAKNIIVGFARINGHSVGIVAN 308
I R D F E + Y + ++ GFA++ GH+VGIV N
Sbjct: 348 EVIARIVDGSRFTEFKKLYGETLVCGFAKLYGHTVGIVGN 387
>sp|Q5XIT9|MCCB_RAT Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Rattus
norvegicus GN=Mccc2 PE=2 SV=1
Length = 563
Score = 142 bits (357), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 93/318 (29%), Positives = 162/318 (50%), Gaps = 41/318 (12%)
Query: 28 RAIALQGGGTKSIQAQH-NKGKLTARERVELLCDPGT-FVEYDMFMEHRCVDFNMSEKKI 85
RA ++ GG++ +A+H ++GKL R+R++ L DPG+ F+E+ F ++ E+++
Sbjct: 59 RAQYVRLGGSEKARARHTSRGKLLPRDRIDNLIDPGSPFLEFSQFAGYKL----YGEEEV 114
Query: 86 PGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSG 145
P ++TG G V+G I + D TV GG+ V +K + + A+ P + L DSG
Sbjct: 115 PAGGIITGIGRVSGVECMIVANDATVKGGTYYPVTVKKHVRAQEIALQNRLPCIYLVDSG 174
Query: 146 GARIQEGVESLAA---YSSVF-QRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVE 201
GA + ++ + +F + I++S + QI++++G C G Y PA+ D +V+
Sbjct: 175 GANLPRQADTFPDRDHFGRIFYNQAIMSSKNITQIAVVMGSCTAGGAYVPAMADENIIVQ 234
Query: 202 HSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFL 261
+F+ GP ++K+ T E++S E+LGGA H SGV + +D A+ R ++ L
Sbjct: 235 RQGTIFLAGPPLVKAATGEEVSAEDLGGADLHCRRSGVTDHYALDDHHALHLTRKVVRSL 294
Query: 262 ----PMNNTQKPP-----------------IRRCYDSRE----------FFEIQPKYAKN 290
++ T +P ++R +D RE F E + Y
Sbjct: 295 NYQKKLDVTVEPSEEPLFPADELYGIVGANLKRSFDVREVIARIVDGSRFNEFKALYGDT 354
Query: 291 IIVGFARINGHSVGIVAN 308
++ GFARI G+ VGI+ N
Sbjct: 355 LVTGFARIFGYPVGIIGN 372
>sp|P63407|PCC6_MYCTU Probable propionyl-CoA carboxylase beta chain 6 OS=Mycobacterium
tuberculosis GN=accD6 PE=3 SV=1
Length = 473
Score = 140 bits (354), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 129/248 (52%), Gaps = 28/248 (11%)
Query: 90 VVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARI 149
V+ G+VNG F D TV GG++ I D A+ +PIVG+ SGGAR+
Sbjct: 42 VLAAAGTVNGVRTIAFCTDGTVMGGAMGVEGCTHIVNAYDTAIEDQSPIVGIWHSGGARL 101
Query: 150 QEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFIT 209
EGV +L A VF+ I ASG +PQIS+++G AGGA Y PA+TD M S +F+T
Sbjct: 102 AEGVRALHAVGQVFEAMIRASGYIPQISVVVGFAAGGAAYGPALTDVVVMAPESR-VFVT 160
Query: 210 GPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFL-------- 261
GPDV++SVT ED+ LGG +TH SGV H +++DA R L+G
Sbjct: 161 GPDVVRSVTGEDVDMASLGGPETHHKKSGVCHIVADDELDAYDRGRRLVGLFCQQGHFDR 220
Query: 262 --------PMNNTQKPPIRRCYDSR-----------EFFEIQPKYAKNIIVGFARINGHS 302
++ RR YD R F E Q +A +++VG R++G +
Sbjct: 221 SKAEAGDTDIHALLPESSRRAYDVRPIVTAILDADTPFDEFQANWAPSMVVGLGRLSGRT 280
Query: 303 VGIVANQP 310
VG++AN P
Sbjct: 281 VGVLANNP 288
Score = 38.1 bits (87), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 19/109 (17%)
Query: 89 SVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIV--------- 139
S+V G G ++GRTV + + + GG L+S AEK + + G P+V
Sbjct: 268 SMVVGLGRLSGRTVGVLANNPLRLGGCLNSESAEKAARFVRLCDAFGIPLVVVVDVPGYL 327
Query: 140 -GLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGA 187
G++ G ++ G + L A+ VP+++L+ GGA
Sbjct: 328 PGVDQEWGGVVRRGAKLLHAFGEC---------TVPRVTLVTRKTYGGA 367
>sp|P63408|PCC6_MYCBO Probable propionyl-CoA carboxylase beta chain 6 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=accD6 PE=3
SV=1
Length = 473
Score = 140 bits (354), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 129/248 (52%), Gaps = 28/248 (11%)
Query: 90 VVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARI 149
V+ G+VNG F D TV GG++ I D A+ +PIVG+ SGGAR+
Sbjct: 42 VLAAAGTVNGVRTIAFCTDGTVMGGAMGVEGCTHIVNAYDTAIEDQSPIVGIWHSGGARL 101
Query: 150 QEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFIT 209
EGV +L A VF+ I ASG +PQIS+++G AGGA Y PA+TD M S +F+T
Sbjct: 102 AEGVRALHAVGQVFEAMIRASGYIPQISVVVGFAAGGAAYGPALTDVVVMAPESR-VFVT 160
Query: 210 GPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFL-------- 261
GPDV++SVT ED+ LGG +TH SGV H +++DA R L+G
Sbjct: 161 GPDVVRSVTGEDVDMASLGGPETHHKKSGVCHIVADDELDAYDRGRRLVGLFCQQGHFDR 220
Query: 262 --------PMNNTQKPPIRRCYDSR-----------EFFEIQPKYAKNIIVGFARINGHS 302
++ RR YD R F E Q +A +++VG R++G +
Sbjct: 221 SKAEAGDTDIHALLPESSRRAYDVRPIVTAILDADTPFDEFQANWAPSMVVGLGRLSGRT 280
Query: 303 VGIVANQP 310
VG++AN P
Sbjct: 281 VGVLANNP 288
Score = 38.1 bits (87), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 19/109 (17%)
Query: 89 SVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIV--------- 139
S+V G G ++GRTV + + + GG L+S AEK + + G P+V
Sbjct: 268 SMVVGLGRLSGRTVGVLANNPLRLGGCLNSESAEKAARFVRLCDAFGIPLVVVVDVPGYL 327
Query: 140 -GLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGA 187
G++ G ++ G + L A+ VP+++L+ GGA
Sbjct: 328 PGVDQEWGGVVRRGAKLLHAFGEC---------TVPRVTLVTRKTYGGA 367
>sp|Q3ULD5|MCCB_MOUSE Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Mus
musculus GN=Mccc2 PE=2 SV=1
Length = 563
Score = 140 bits (354), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 93/318 (29%), Positives = 162/318 (50%), Gaps = 41/318 (12%)
Query: 28 RAIALQGGGTKSIQAQH-NKGKLTARERVELLCDPGT-FVEYDMFMEHRCVDFNMSEKKI 85
RA ++ GG++ +A+H ++GKL R+R++ L DPG+ F+E+ F ++ ++++
Sbjct: 59 RAQYVRLGGSEKARARHTSRGKLLPRDRIDNLIDPGSPFLEFSQFAGYQL----YGDEEV 114
Query: 86 PGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSG 145
P ++TG G V+G I + D TV GG+ V +K + + A+ P + L DSG
Sbjct: 115 PAGGIITGIGRVSGVECMIVANDATVKGGTYYPVTVKKHVRAQEIALQNRLPCIYLVDSG 174
Query: 146 GARIQEGVESLAA---YSSVF-QRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVE 201
GA + ++ + +F + I++S + QI++++G C G Y PA+ D +V+
Sbjct: 175 GANLPRQADTFPDRDHFGRIFYNQAIMSSKNITQIAVVMGSCTAGGAYVPAMADENIIVQ 234
Query: 202 HSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFL 261
+F+ GP ++K+ T E++S E+LGGA H SGV + +D A+ R ++ L
Sbjct: 235 KQGTIFLAGPPLVKAATGEEVSAEDLGGADLHCRKSGVTDHYALDDHHALHLTRKVVRSL 294
Query: 262 ----PMNNTQKPP-----------------IRRCYDSRE----------FFEIQPKYAKN 290
M+ T +P ++R +D RE F E + Y
Sbjct: 295 NYQKKMDVTIEPSEEPLFPADELYGIVGANLKRSFDVREVIARIVDGSRFNEFKALYGDT 354
Query: 291 IIVGFARINGHSVGIVAN 308
++ GFARI G+ VGI+ N
Sbjct: 355 LVTGFARIFGYPVGIIGN 372
>sp|Q9LDD8|MCCB_ARATH Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial
OS=Arabidopsis thaliana GN=MCCB PE=2 SV=1
Length = 587
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 159/320 (49%), Gaps = 49/320 (15%)
Query: 32 LQGGGTKSIQAQHNKGKLTARERVELLCDPGT-FVEYDMFMEHRCVDFNMSEKKIPGDSV 90
L GGG ++++ ++ KL RER++ L DPG+ F+E H + E+ +P +
Sbjct: 83 LAGGGEEAVKRNRSRNKLLPRERIDRLLDPGSSFLELSQLAGH-----ELYEEPLPSGGI 137
Query: 91 VTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQ 150
+TG G ++GR + D TV GG+ + +K + + A P + L DSGGA +
Sbjct: 138 ITGIGPIHGRICMFMANDPTVKGGTYYPITIKKHLRAQEIAARCRLPCIYLVDSGGAYLP 197
Query: 151 EGVESLA---AYSSVF-QRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYL 206
+ E + VF ++++S +PQI+++LG C G Y PA+ D + MV+ + +
Sbjct: 198 KQAEVFPDKENFGRVFYNESVMSSDGIPQIAIVLGSCTAGGAYIPAMADESVMVKGNGTI 257
Query: 207 FITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSND------------------- 247
F+ GP ++K+ T E++S E+LGGA H +VSGV+ + F+ D
Sbjct: 258 FLAGPPLVKAATGEEVSAEDLGGATVHCTVSGVS-DYFAQDELHGLAIGRNIVKNLHMAA 316
Query: 248 ---------------IDAIQNVRHLLGFLPMNNTQKPPIR----RCYDSREFFEIQPKYA 288
+ + ++ L P+++ Q+ +R R D EF E + +Y
Sbjct: 317 KQGMEGTFGSKNLVYKEPLYDINELRSIAPVDHKQQFDVRSIIARIVDGSEFDEFKKQYG 376
Query: 289 KNIIVGFARINGHSVGIVAN 308
++ GFARI G +VGI+ N
Sbjct: 377 TTLVTGFARIYGQTVGIIGN 396
>sp|Q9HCC0|MCCB_HUMAN Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Homo
sapiens GN=MCCC2 PE=1 SV=1
Length = 563
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 153/311 (49%), Gaps = 40/311 (12%)
Query: 34 GGGTKSIQAQHNKGKLTARERVELLCDPGT-FVEYDMFMEHRCVDFNMSEKKIPGDSVVT 92
GGG K+ ++GKL RER++ L DPG+ F+E F ++ D +++PG ++T
Sbjct: 66 GGGEKARALHISRGKLLPRERIDNLIDPGSPFLELSQFAGYQLYD----NEEVPGGGIIT 121
Query: 93 GRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEG 152
G G V+G I + D TV GG+ V +K + + AM P + L DSGGA +
Sbjct: 122 GIGRVSGVECMIIANDATVKGGAYYPVTVKKQLRAQEIAMQNRLPCIYLVDSGGAYLPRQ 181
Query: 153 VESLAAYS----SVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI 208
+ + + + I++S + QI++++G C G Y PA+ D +V +F+
Sbjct: 182 ADVFPDRDHFGRTFYNQAIMSSKNIAQIAVVMGSCTAGGAYVPAMADENIIVRKQGTIFL 241
Query: 209 TGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFL----PMN 264
GP ++K+ T E++S E+LGGA H SGV+ + +D A+ R ++ L ++
Sbjct: 242 AGPPLVKAATGEEVSAEDLGGADLHCRKSGVSDHWALDDHHALHLTRKVVRNLNYQKKLD 301
Query: 265 NTQKPP-----------------IRRCYDSRE----------FFEIQPKYAKNIIVGFAR 297
T +P ++R +D RE F E + Y ++ GFAR
Sbjct: 302 VTIEPSEEPLFPADELYGIVGANLKRSFDVREVIARIVDGSRFTEFKAFYGDTLVTGFAR 361
Query: 298 INGHSVGIVAN 308
I G+ VGIV N
Sbjct: 362 IFGYPVGIVGN 372
>sp|Q8T2J9|MCCB_DICDI Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial
OS=Dictyostelium discoideum GN=mccb PE=3 SV=2
Length = 588
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 146/312 (46%), Gaps = 42/312 (13%)
Query: 34 GGGTKSIQAQHNKGKLTARERVELLCDPGT-FVEYDMFMEHRCVDFNM-SEKKIPGDSVV 91
GGG K Q ++GKL RER+E L D G+ F+E+ + M ++++ ++
Sbjct: 89 GGGEKLNQKNISRGKLLVRERIEALIDVGSPFLEFSQL-----AGWGMYGKEEVAAGGII 143
Query: 92 TGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQE 151
TG G ++G I + D TV GG+ + +K + + A P + L DSGGA +
Sbjct: 144 TGIGKIHGVECVIVANDSTVKGGTYFPITVKKHLRAQEIAQENNLPCIYLVDSGGANLPR 203
Query: 152 GVESLAAYSSV----FQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLF 207
+ F + +++ +PQI++++G C G Y PA+ D + +V+ + +F
Sbjct: 204 QADVFPDRDHFGRIFFNQANMSAKRIPQIAVVMGSCTAGGAYVPAMADESVIVKGTGTIF 263
Query: 208 ITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVR------------ 255
+ GP ++K+ T E ++ EELGGA H SGV + +D +AI R
Sbjct: 264 LGGPPLVKAATGEIVTSEELGGADLHCRTSGVTDHYARDDAEAIAITRRIVSNLNRKKQP 323
Query: 256 ---------------HLLGFLPMNNTQKPPIR----RCYDSREFFEIQPKYAKNIIVGFA 296
L G +P + + IR R D F E + Y +I GFA
Sbjct: 324 SPVITETEEPLYPTSELAGIVPSDLKKNFDIRKVIARLVDGSRFDEFKELYGTTLICGFA 383
Query: 297 RINGHSVGIVAN 308
R++G VGI+AN
Sbjct: 384 RVHGMPVGIIAN 395
>sp|A7NN57|ACCD2_ROSCS Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta 2
OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8)
GN=accD2 PE=3 SV=2
Length = 300
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 94/189 (49%), Gaps = 15/189 (7%)
Query: 48 KLTARERVELLCDPGTFVEYDMFM------------EHRCVDFNMSEKKI-PGDSVVTGR 94
+LTARE + LL D G+FVEYD + E ++++ D VV+G
Sbjct: 56 RLTAREWLALL-DEGSFVEYDAHLRPTDPLGFVSPKEAYADKLRETQRRTGLADVVVSGV 114
Query: 95 GSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVE 154
GS+ G + I DF GGS+ SV EK+ + ++A G P++ +N SGGAR+QEGV
Sbjct: 115 GSIEGYRLSIAVCDFNFIGGSMGSVFGEKMARAAERAATLGIPLLTINTSGGARMQEGVI 174
Query: 155 SLAAYSSV-FQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDV 213
+L + V LA+ P I++++ PC GG S A + E + + G V
Sbjct: 175 ALMQLAKVNMALTRLAAARQPHIAVLVDPCYGGVTASYASVADIIIAEPGANIGFAGRRV 234
Query: 214 IKSVTNEDI 222
I+ + +
Sbjct: 235 IEQTIRQKL 243
>sp|Q8RGA0|ACCD_FUSNN Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC
25586 / CIP 101130 / JCM 8532 / LMG 13131) GN=accD PE=3
SV=1
Length = 304
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 97/188 (51%), Gaps = 14/188 (7%)
Query: 49 LTARERVELLCDPGTFVEYDMFMEH-RCVDFNMSEKKIP--------GDSVVTGRGSVNG 99
++ARER+ELL D GTF E D+ + ++F +KI + V++G G +NG
Sbjct: 84 MSARERIELLIDEGTFKEEDVTLTSANPINFPEYVEKIEKAQHDSGMNEGVISGLGEING 143
Query: 100 RTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESL--- 156
V I DF GGS+ SV EKI +++A+ P V + SGGAR+QEG+ SL
Sbjct: 144 LKVSIACMDFNFMGGSMGSVVGEKITAALERAIEHKIPAVVVAISGGARMQEGLTSLMQM 203
Query: 157 AAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKS 216
A S+ ++ LA +P IS+ + P GG S A+ + E + + GP VI+
Sbjct: 204 AKTSAAVKKMRLAG--LPFISVPVNPTTGGVTASFAMLGDIIISEPKARIGFAGPRVIEQ 261
Query: 217 VTNEDISQ 224
+ + +
Sbjct: 262 TIRQKLPE 269
>sp|Q3A6L1|ACCD_PELCD Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
GN=accD PE=3 SV=1
Length = 282
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 21/194 (10%)
Query: 48 KLTARERVELLCDPGTFVEYDMFMEHRCVDF--------------NMSEKKIPGDSVVTG 93
+++ARER+ L+ D G+FVE D M + VDF +K D+V+ G
Sbjct: 56 RISARERIALVLDEGSFVERDAGM--KSVDFLEFKDGKRYRDRISAAIKKSGLNDAVIWG 113
Query: 94 RGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGV 153
G++ + V + DF+ GGS+ SV EKI + +++A+ P + + SGGAR+QE +
Sbjct: 114 EGAIEAQPVVVAVFDFSFMGGSMGSVVGEKITRAVEKALENRCPCLVFSSSGGARMQESI 173
Query: 154 ESL---AAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITG 210
SL A S+ R L +P IS++ P GG S A+ M E + + G
Sbjct: 174 MSLMQMAKTSAALSR--LKEAGLPYISIMTDPTTGGVTASFAMLGDVNMAEPRALIGFAG 231
Query: 211 PDVIKSVTNEDISQ 224
P VI+ + + +
Sbjct: 232 PRVIEQTIRQKLPE 245
>sp|B1H0E3|ACCD_UNCTG Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Uncultured termite group 1 bacterium phylotype Rs-D17
GN=accD PE=3 SV=1
Length = 274
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 97/188 (51%), Gaps = 14/188 (7%)
Query: 48 KLTARERVELLCDPGTFVEYDMFMEHRCVDF-------NMSEKKIPGDSVVTGRGSVNGR 100
+L+AR+R+E D G+F E D ++ V+F + +K D+VVTG +NG
Sbjct: 49 RLSARKRIEFTVDKGSFKEMDEAIQP--VNFLCFPGYSDKIKKSEMSDAVVTGEAKINGY 106
Query: 101 TVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESL---A 157
+V I DF GGS+ SV EKI + +++A+ ++ ++ SGGAR+QEG SL
Sbjct: 107 SVVIAVMDFEFMGGSMGSVVGEKIVRAIEKALKKKRHVIIISASGGARMQEGTISLMQMG 166
Query: 158 AYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKSV 217
S+ + LA + IS++ P GG S A+ + E + + GP VI+
Sbjct: 167 KTSAALAK--LADNRLAFISILTDPTTGGVAASYAMLGDINIAEPKALIGFAGPRVIEQT 224
Query: 218 TNEDISQE 225
+ +S+E
Sbjct: 225 IRQQLSEE 232
>sp|Q24XY8|ACCD_DESHY Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Desulfitobacterium hafniense (strain Y51) GN=accD
PE=3 SV=1
Length = 304
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 27/229 (11%)
Query: 48 KLTARERVELLCDPGTFVEYDMFMEH-RCVDFNMSEKKIP--------GDSVVTGRGSVN 98
++ ARER+E L DPG+F E+D ++ + F E+K+ +SV+TG+ S+
Sbjct: 79 RIPARERLEHLVDPGSFAEWDRELQTTNPLSFPDYEEKLAEAYQKSDVSESVLTGQASIE 138
Query: 99 GRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESL-- 156
G V + + GS+ SV EKI + +++A+ P++ + SGGAR+QEG+ SL
Sbjct: 139 GMPVVLAFNEGNFMMGSMGSVTGEKITRAIERAIELRCPVIIFSTSGGARMQEGILSLYQ 198
Query: 157 -AAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIK 215
A S+ R LA + IS++ P GG S A + E + + TGP VIK
Sbjct: 199 MAKTSAALGR--LAEEGLLYISVLTDPTFGGVTASYASLGDIHIAEPGALIGFTGPRVIK 256
Query: 216 SVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAI---QNVRHLLGFL 261
+++ + GA+T N ID + +R +LG L
Sbjct: 257 QTMRKELPE----GAQT------AEFNQSHGQIDCVVERAEMRKVLGRL 295
>sp|B8FTK7|ACCD_DESHD Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Desulfitobacterium hafniense (strain DCB-2 / DSM
10664) GN=accD PE=3 SV=1
Length = 304
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 27/229 (11%)
Query: 48 KLTARERVELLCDPGTFVEYDMFMEH-RCVDFNMSEKKIP--------GDSVVTGRGSVN 98
++ ARER+E L DPG+F E+D ++ + F E+K+ +SV+TG+ S+
Sbjct: 79 RIPARERLEHLVDPGSFAEWDRELQTTNPLSFPDYEEKLAEAYQKSDVSESVLTGQASIE 138
Query: 99 GRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESL-- 156
G V + + GS+ SV EKI + +++A+ P++ + SGGAR+QEG+ SL
Sbjct: 139 GMPVVLAFNEGNFMMGSMGSVTGEKITRAIERAIELRCPVIIFSTSGGARMQEGILSLYQ 198
Query: 157 -AAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIK 215
A S+ R LA + IS++ P GG S A + E + + TGP VIK
Sbjct: 199 MAKTSAALGR--LAEEGLLYISVLTDPTFGGVTASYASLGDIHIAEPGALIGFTGPRVIK 256
Query: 216 SVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAI---QNVRHLLGFL 261
+++ + GA+T N ID + +R +LG L
Sbjct: 257 QTMRKELPE----GAQT------AEFNQSHGQIDCVVERAEMRKVLGRL 295
>sp|Q97DB1|ACCD_CLOAB Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792
/ JCM 1419 / LMG 5710 / VKM B-1787) GN=accD PE=3 SV=1
Length = 285
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 14/190 (7%)
Query: 48 KLTARERVELLCDPGTFVEYDM-FMEHRCVDF--------NMSEKKIPGDSVVTGRGSVN 98
++ ARER+E + D GTF+E+D M ++F +M EK D VVTG G++N
Sbjct: 64 RMNARERIEFIIDEGTFIEFDKNMMAANPLEFPNYEAKIKSMQEKTGLKDGVVTGLGNIN 123
Query: 99 GRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESL-- 156
G I D GS+ SV EKI + +++A P++ SGGAR+QEG+ SL
Sbjct: 124 GYKTVIAVMDSNFMMGSMGSVVGEKITRAIEEATERKLPVIIFTTSGGARMQEGMFSLMQ 183
Query: 157 -AAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIK 215
A S+ ++ A + +S++ P GG S A+ + E + + G VI+
Sbjct: 184 MAKTSAALAKHNEAG--LLYVSVLTDPTTGGVTASFAMLGDIILAEPKTLIGFAGRRVIE 241
Query: 216 SVTNEDISQE 225
N+ + +
Sbjct: 242 QTINQKLPSD 251
>sp|Q1AU96|ACCD_RUBXD Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC
16129) GN=accD PE=3 SV=1
Length = 257
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 21/227 (9%)
Query: 49 LTARERVELLCDPGTFVEYD--------MFMEHRCVDFNMSEKKIP-GDSVVTGRGSVNG 99
L A ERV LL D G+F E D + E + KK GD++++G G + G
Sbjct: 37 LPAPERVRLLTDAGSFEERDGELAAGDPLGFEGYPDRLRSARKKTGLGDAILSGVGEIGG 96
Query: 100 RTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESL--A 157
R V + DF GGS+ SV E++ + ++ A G P+V ++ SGGAR+ EG+ SL
Sbjct: 97 RRVALAVMDFRFIGGSMGSVVGERVARTVELARAEGLPLVTVSASGGARMFEGIYSLMQM 156
Query: 158 AYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKSV 217
A +SV + G P IS++ P GG S A + E + + G VI+
Sbjct: 157 AKTSVALSRFM-EGSKPYISILTDPTFGGVTASFATAADIIIAEPGARVGFAGARVIEQT 215
Query: 218 TNEDISQ--EELGGAKTHTSVSGVAHN-AFSNDIDAIQNVRHLLGFL 261
T E + + + + H V + H A D++ LLGF+
Sbjct: 216 TKERLPEGFQTAEFQREHGMVDRIVHRLALKGDLE------RLLGFV 256
>sp|A9B536|ACCD_HERA2 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM
785) GN=accD PE=3 SV=1
Length = 298
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 14/189 (7%)
Query: 48 KLTARERVELLCDPGTFVEYDMFME-------------HRCVDFNMSEKKIPGDSVVTGR 94
++++RE +E+L D +FVEYD ++ + SE+ D V++G
Sbjct: 56 RISSREWIEVLADADSFVEYDADLQGIDILGFVSPKDNYEAKLAATSERTGTNDVVMSGS 115
Query: 95 GSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVE 154
S+ G I + +F GGS+ SV EK+ + +++A G P++ +N SGGAR+ EG+
Sbjct: 116 ASIEGLPFEIAACNFEFMGGSMGSVFGEKVARAVERAADRGVPVLTINASGGARMHEGIF 175
Query: 155 SLAAYSSV-FQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDV 213
+L + V LA P ISL++ PC GG S A + E + + G V
Sbjct: 176 ALMQMAKVSVALTRLARVRQPHISLLVDPCYGGVSASYASVADIILAEPGANIGFAGRRV 235
Query: 214 IKSVTNEDI 222
I+ + +
Sbjct: 236 IEQTIRQKL 244
>sp|Q7MAM0|ACCD_WOLSU Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740
/ LMG 7466 / NCTC 11488 / FDC 602W) GN=accD PE=3 SV=1
Length = 289
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 99/209 (47%), Gaps = 24/209 (11%)
Query: 38 KSIQAQHN-------KGKLTARERVELLCDPGTFVEYDMFMEHR----CVDFNMSEKKIP 86
K + AQH+ ++ +R+E+LCD GT +E+D +E VD +K+I
Sbjct: 37 KEVIAQHHVCPKCNFHMRIALEDRIEMLCDEGTLIEHDASLEPTDPLTFVDKKSYKKRIE 96
Query: 87 --------GDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPI 138
SV++G +NG + I +F GGSL SV EKI + +++A+ +
Sbjct: 97 EGKQKTGRASSVLSGECRINGVSTQIVLFNFAFMGGSLGSVEGEKIVRAVNRALEKHQGL 156
Query: 139 VGLNDSGGARIQEGVESL---AAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITD 195
V L+ SGGAR+QE SL A S+ R L+ +P ISL+ P GG S A
Sbjct: 157 VILSTSGGARMQESTYSLMQMAKTSAALAR--LSQAKLPFISLLTDPTMGGVSASFAFLG 214
Query: 196 FTFMVEHSSYLFITGPDVIKSVTNEDISQ 224
+ E + + G VIK D+ +
Sbjct: 215 DIIIAEPGAMVGFAGARVIKQTIGADLPE 243
>sp|Q2JIG8|ACCD_SYNJB Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=accD
PE=3 SV=1
Length = 314
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 93/185 (50%), Gaps = 17/185 (9%)
Query: 48 KLTARERVELLCDPGTFVEYD---------MFMEHRCVDFNMS---EKKIPGDSVVTGRG 95
++TA ER+E L DPG++ D F + + ++ E+ D+V+TG G
Sbjct: 68 RITAPERLEQLLDPGSWQPLDEHLAPTDPLHFFDQKPYSERLATYQERTQLKDAVLTGLG 127
Query: 96 SVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVES 155
S+ G V I DF GGS+ SV EKI ++ ++A P++ + SGGAR+QEG+ S
Sbjct: 128 SLEGIPVAIGVMDFRFMGGSMGSVVGEKIARLTERATCDHLPLILFSASGGARMQEGILS 187
Query: 156 L---AAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPD 212
L A S+ QR+ A + IS++ P GG S A+ + E + GP+
Sbjct: 188 LMQMAKTSAALQRHRDARQLF--ISVLTHPTYGGVTASFAMLGDLILAEPGVQVGFAGPN 245
Query: 213 VIKSV 217
VI+
Sbjct: 246 VIEQT 250
>sp|Q3ACZ8|ACCD_CARHZ Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Carboxydothermus hydrogenoformans (strain Z-2901 /
DSM 6008) GN=accD PE=3 SV=1
Length = 280
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 10/187 (5%)
Query: 48 KLTARERVELLCDPGTFVEYDMFMEH-RCVDFNMSEKKIP--------GDSVVTGRGSVN 98
K++A ER++LLCD +FVE+ + ++F E+K+ ++VVTG G +N
Sbjct: 57 KISAWERIKLLCDENSFVEFGREISGGNPLNFPGYEEKLAEAREKTGLKEAVVTGLGKIN 116
Query: 99 GRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAA 158
GR V + D S+ + EKIC M++A+ P+V SGGAR+QEG+ SL
Sbjct: 117 GREVVLAIMDPNFIMASMGTAVGEKICLAMEKALEKKLPLVVFTASGGARMQEGIFSLMQ 176
Query: 159 YSSVFQR-NILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKSV 217
+ Q N L + + + ++ P GG S A + E + + GP VI+
Sbjct: 177 MAKTVQLVNRLNAEKIFYLVVMTDPTTGGVSASFAALGDIILAEPGALIGFAGPRVIEQT 236
Query: 218 TNEDISQ 224
+ + +
Sbjct: 237 IRQKLPE 243
>sp|B5EAK5|ACCD_GEOBB Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 /
DSM 16622) GN=accD PE=3 SV=1
Length = 282
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 99/193 (51%), Gaps = 19/193 (9%)
Query: 48 KLTARERVELLCDPGTFVEYDM------FMEHRCVDFNMSEKKI--------PGDSVVTG 93
++++++R+ELL D G+F E+D F+E + D + +I D+++ G
Sbjct: 56 RVSSKKRLELLLDEGSFTEFDAGVVSVDFLEFK--DSKSYQDRIDQALAKGGSKDAIICG 113
Query: 94 RGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGV 153
G + G V I DF+ GGS+ SV EKI + +++A+ P + ++ SGGAR+QE +
Sbjct: 114 SGRIEGTPVQICVFDFSFMGGSMGSVVGEKITRGIERALSDRTPCIIVSASGGARMQESI 173
Query: 154 ESL--AAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGP 211
SL A +S + +G +P +S++ P GG S A+ M E + + GP
Sbjct: 174 LSLMQMAKTSAALAKLREAG-LPFVSILTDPTTGGVTASFAMLGDINMAEPKALIGFAGP 232
Query: 212 DVIKSVTNEDISQ 224
VI+ + + Q
Sbjct: 233 RVIEQTIRQKLPQ 245
>sp|Q187P6|ACCD_CLOD6 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Clostridium difficile (strain 630) GN=accD PE=3 SV=1
Length = 284
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 99/188 (52%), Gaps = 14/188 (7%)
Query: 49 LTARERVELLCDPGTFVEYDMFME-HRCVDF--------NMSEKKIPGDSVVTGRGSVNG 99
L AR+R+ LL D GTF+E++ +E ++F + EK ++VVTG G +NG
Sbjct: 63 LRARKRINLLIDKGTFMEFNSDVEFQNPLNFPKYKEKVDSYKEKTKESEAVVTGYGRING 122
Query: 100 -RTVF-IFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLA 157
+TV + + DF + GS+ S+ EKI ++ A PI+ + SGGAR+QEG+ SL
Sbjct: 123 IKTVICVMNPDFMM--GSMGSIVGEKITYSIEYAAENNLPIIICSASGGARMQEGMVSLM 180
Query: 158 AYSSVFQR-NILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKS 216
+ Q + L +P IS++ P GG S A+ + E ++ + GP VI+
Sbjct: 181 QMAKTSQALSKLEEKSLPYISVLTDPTTGGVTASFAMLGDIIISEPNTLIGFAGPRVIEQ 240
Query: 217 VTNEDISQ 224
N+ + +
Sbjct: 241 TINQKLPE 248
>sp|Q85FL3|ACCD_ADICA Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta,
chloroplastic OS=Adiantum capillus-veneris GN=accD PE=2
SV=2
Length = 310
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 94/189 (49%), Gaps = 16/189 (8%)
Query: 49 LTARERVELLCDPGTFVEYDMFMEHRCV----DFNMSEKKIP--------GDSVVTGRGS 96
+++ ER+ELL DP T++ D M R + D + E +I D+V TG G
Sbjct: 79 MSSMERIELLIDPNTWIPLDEDMSARDILSFSDEDSYETRILLSQEKTGLTDAVQTGIGY 138
Query: 97 VNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESL 156
+NG + + DF GGS+ SV EKI ++++ A P+V + SGGAR+QEG SL
Sbjct: 139 LNGTLIALGVMDFHFMGGSMGSVVGEKITRLIEYATQRLLPLVLICASGGARMQEGTLSL 198
Query: 157 ---AAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDV 213
A SSV Q + + ++ IS++ P GG S + + E +Y+ G V
Sbjct: 199 MQMAKISSVLQLYQVQNKLL-YISVLTYPTTGGVTASFGMLGDIIIAEPKAYIAFAGKRV 257
Query: 214 IKSVTNEDI 222
I+ + I
Sbjct: 258 IEQTLRQKI 266
>sp|B1ZVD6|ACCD_OPITP Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=accD
PE=3 SV=1
Length = 291
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 19/188 (10%)
Query: 51 ARERVELLCDPGTFVEYDMFMEHRCVD-------------FNMSEKK--IPGDSVVTGRG 95
ARER+ L DPG+FVE ++ E R D EK+ +P ++VVTG G
Sbjct: 57 ARERLGYLLDPGSFVESNI--EVRSADPLQFVDSAPYPARIKKYEKESGLP-EAVVTGAG 113
Query: 96 SVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVES 155
++G V + DF GG+L S EKI + ++ A+ P + + SGGAR+QEG+ S
Sbjct: 114 KIHGVPVSLAVMDFRFCGGTLGSAAGEKITRAIETAIAQKIPCIIFSTSGGARMQEGILS 173
Query: 156 LAAYSSV-FQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVI 214
L + LA+ +P IS++ P GG S A + E + + GP VI
Sbjct: 174 LMQMAKTSAALGRLAAARLPYISVLTHPTTGGVSASYATLGDVILAEPGALIGFAGPRVI 233
Query: 215 KSVTNEDI 222
K T + +
Sbjct: 234 KDTTKQTL 241
>sp|B8D1K3|ACCD_HALOH Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM
9562) GN=accD PE=3 SV=1
Length = 292
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 100/190 (52%), Gaps = 16/190 (8%)
Query: 48 KLTARERVELLCDPGTFVEYDMFMEHRCVD---FNMSEKKIPG--------DSVVTGRGS 96
+LTAR+R+ + D G+F E+ + + VD F ++KI ++++TG +
Sbjct: 63 RLTARDRLAITIDEGSFKEFGQ--DIKTVDPLEFPGYQQKIGKYKVKTGMEEAIITGEAT 120
Query: 97 VNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESL 156
+ G V I DF GGS+ SV EK+ + +++A+ T P+V + +GGAR+QEG+ SL
Sbjct: 121 IEGYPVVIAVMDFHFMGGSMGSVVGEKVTRAIEKAISTRKPLVIFSTAGGARMQEGMLSL 180
Query: 157 --AAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVI 214
A +S + + +G++ +S++ P +GG S A + E + + GP VI
Sbjct: 181 MQMAKTSAAIKRLNKAGIL-YVSVMTDPTSGGVTASFASLGDIIIAEKGALIAFAGPRVI 239
Query: 215 KSVTNEDISQ 224
K + + +
Sbjct: 240 KQTISTKLPE 249
>sp|B3DWQ9|ACCD_METI4 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Methylacidiphilum infernorum (isolate V4) GN=accD
PE=3 SV=1
Length = 277
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 94/189 (49%), Gaps = 17/189 (8%)
Query: 49 LTARERVELLCDPGTFVEYDMFMEH-RCVDFNMSE-----------KKIPGDSVVTGRGS 96
L A ER+ + DPG+F+E + + + FN + K ++VV G +
Sbjct: 54 LKAPERIACITDPGSFIECEKHLHSVDILGFNGEKSYQERLDYYRNKTALDEAVVCGSCT 113
Query: 97 VNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESL 156
+ VF+ DF GGS+ SV EKI +++++++ P++ ++ SGGAR+ EG+ SL
Sbjct: 114 IGSIPVFLCVMDFGFLGGSMGSVVGEKITRMIEKSLSAKTPLLIISASGGARMYEGMFSL 173
Query: 157 ---AAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDV 213
A ++ QR L+ VP ISL+ P G + S A + E + + G V
Sbjct: 174 MQMAKTAAALQR--LSQAHVPYISLLTNPTMAGVIASFASLGDVILAEPKAMIGFAGSRV 231
Query: 214 IKSVTNEDI 222
IK T +++
Sbjct: 232 IKETTQQEL 240
>sp|Q2JSX0|ACCD_SYNJA Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Synechococcus sp. (strain JA-3-3Ab) GN=accD PE=3 SV=1
Length = 314
Score = 77.8 bits (190), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 118/256 (46%), Gaps = 30/256 (11%)
Query: 48 KLTARERVELLCDPGTFVEYD---------MFMEHRCVDFNMS---EKKIPGDSVVTGRG 95
++TA +R++ L DPG++ D F + + ++ E+ D+V+TG G
Sbjct: 68 RITAPQRLQQLLDPGSWQPLDEHLAPTDPLHFFDQKPYAERLASYQERTQLKDAVLTGLG 127
Query: 96 SVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVES 155
S+ G V + DF GGS+ SV EKI ++ ++A P+V + SGGAR+QEG+ S
Sbjct: 128 SLEGIPVAMGVMDFRFMGGSMGSVVGEKITRLTERATRDHLPLVIFSASGGARMQEGILS 187
Query: 156 L---AAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPD 212
L A ++ QR+ A + IS++ P GG S A+ + E + + GP+
Sbjct: 188 LMQMAKTAAALQRHREAGQLF--ISVLTHPTYGGVTASFAMLGDLILAEPGAQVGFAGPN 245
Query: 213 VIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLPMNNTQKPPIR 272
VI+ + E T+ +AH + + R L L M+ +P +R
Sbjct: 246 VIEQTIGKGKLPEGF-----QTAEYLLAHGLIDAIVPRTELRRRLAQLLAMH---RPRLR 297
Query: 273 RCYDSREFFEIQPKYA 288
+ ++P YA
Sbjct: 298 MSLPA-----LEPTYA 308
>sp|A5UY57|ACCD2_ROSS1 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta 2
OS=Roseiflexus sp. (strain RS-1) GN=accD2 PE=3 SV=1
Length = 300
Score = 77.8 bits (190), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 15/189 (7%)
Query: 48 KLTARERVELLCDPGTFVEYDMFM------------EHRCVDFNMSEKKI-PGDSVVTGR 94
+L ARE + LL D +FVE+D + E ++++ D VV+G
Sbjct: 56 RLKAREWLALL-DEDSFVEHDAHLRPADPLGFVSPKETYADKLREAQRRTGLADVVVSGV 114
Query: 95 GSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVE 154
GS+ GR + + DF GGS+ SV EK+ + ++A G P++ +N SGGAR+QEGV
Sbjct: 115 GSIEGRRLAVAVCDFEFIGGSMGSVFGEKMARAAERAAALGIPLLTINTSGGARMQEGVI 174
Query: 155 SLAAYSSV-FQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDV 213
+L + V LA+ P I++++ PC GG S A + E + + G V
Sbjct: 175 ALMQLAKVNMALTRLAAARQPHIAVLVDPCYGGVTASYASVADIIIAEPGASIGFAGRRV 234
Query: 214 IKSVTNEDI 222
I+ + +
Sbjct: 235 IEQTIRQKL 243
>sp|B3EU20|ACCD_AMOA5 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Amoebophilus asiaticus (strain 5a2) GN=accD PE=3 SV=1
Length = 281
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 73/139 (52%), Gaps = 3/139 (2%)
Query: 88 DSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGA 147
DS+ G G VNG ++ I DF GGS+ SV EKI K +D A+ AP++ ++ SGGA
Sbjct: 107 DSIQVGYGPVNGNSMVIACMDFNFIGGSMGSVVGEKIAKAVDHALEHKAPLLIISKSGGA 166
Query: 148 RIQEGVESLAAYSSVFQRNI-LASGVVPQISLILGPCAGGAVYSPAIT-DFTFMVEHSSY 205
R+ E SL + + + LA +P ISL+ P GG S A+ DF + E +
Sbjct: 167 RMMEAGLSLMQMAKTSAKLLQLAKARIPYISLLTDPTTGGVTASFAMLGDFN-IAEPGAL 225
Query: 206 LFITGPDVIKSVTNEDISQ 224
+ GP +I+ D+ +
Sbjct: 226 IGFAGPRIIRDTIGRDLPK 244
>sp|Q49YD0|ACCD_STAS1 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Staphylococcus saprophyticus subsp. saprophyticus
(strain ATCC 15305 / DSM 20229) GN=accD PE=3 SV=1
Length = 288
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 89/185 (48%), Gaps = 12/185 (6%)
Query: 49 LTARERVELLCDPGTFVEYDMFMEH-RCVDFNMSEKKIPGD--------SVVTGRGSVNG 99
LTA R+E + D GTF E+D M +DF E+KI D +VVTG ++G
Sbjct: 62 LTAHNRIEAISDEGTFTEFDKGMTSANPLDFPSYEEKIQKDQQKTGLNEAVVTGTAQLDG 121
Query: 100 RTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAY 159
T + D GS+ SV EKIC+I++ P + + SGGAR+QEG+ SL
Sbjct: 122 MTFGVAVMDARFRMGSMGSVLGEKICRIIEHCTENRLPFILFSASGGARMQEGIISLMQM 181
Query: 160 --SSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKSV 217
+SV + +G++ IS I P GG S A + E + + G VI+
Sbjct: 182 GKTSVSLKRHADAGLL-YISYITNPTTGGVSASFASVGDINISEPKALIGFAGRRVIEQT 240
Query: 218 TNEDI 222
NE +
Sbjct: 241 INEKL 245
>sp|A5FJY2|ACCD_FLAJ1 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM
2064 / UW101) GN=accD PE=3 SV=1
Length = 284
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 87/183 (47%), Gaps = 15/183 (8%)
Query: 56 ELLCDPGTFVEYDMFMEHR----CVDF--------NMSEKKIPGDSVVTGRGSVNGRTVF 103
E+L D FVE D M + VD ++ EK D+V TG G GR +
Sbjct: 63 EILFDNNVFVELDKNMTSKDPLHFVDTKKYAERLKDVMEKTHLKDAVRTGVGKSKGRELV 122
Query: 104 IFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLA--AYSS 161
I DF GGS+ +V EKI + +D A+ P V ++ SGGAR+ E SL A +S
Sbjct: 123 ICCMDFAFIGGSMGAVVGEKIARGIDHAIKNKLPFVMISKSGGARMMEAAYSLMQLAKTS 182
Query: 162 VFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKSVTNED 221
V + LA +P ISL P GG S A+ + E + + GP V++ T +D
Sbjct: 183 V-KLAQLAEAKLPYISLCTDPTTGGTTASYAMLGDINISEPGALIGFAGPRVVRDTTGKD 241
Query: 222 ISQ 224
+ +
Sbjct: 242 LPE 244
>sp|B7GGS9|ACCD_ANOFW Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1)
GN=accD PE=3 SV=1
Length = 290
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 93/187 (49%), Gaps = 16/187 (8%)
Query: 49 LTARERVELLCDPGTFVEYDM-FMEHRCVDFNMSEKKIPGD--------SVVTGRGSVNG 99
++A ER+ L D GTF EYD + ++F +KI D +VVTG G++NG
Sbjct: 60 MSAPERIGCLLDEGTFQEYDRHLLSKNPLEFPQYMEKIEEDREKTKLNEAVVTGEGTING 119
Query: 100 RTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESL--- 156
V I D GS+ SV EKI + +++AM P + SGGAR+QEGV SL
Sbjct: 120 FPVVIAVMDSRFRMGSMGSVVGEKIARAIERAMEKSVPFIIFTASGGARMQEGVLSLMQM 179
Query: 157 AAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPA-ITDFTFMVEHSSYLFITGPDVIK 215
A S+ + G++ IS++ P GG S A + D+ F E + + G VI+
Sbjct: 180 AKTSAALKLFSEQGGLI--ISVMTHPTTGGVSASFASLGDYNF-AEPGALIGFAGRRVIE 236
Query: 216 SVTNEDI 222
E++
Sbjct: 237 QTVREEL 243
>sp|A8MLP1|ACCD_ALKOO Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Alkaliphilus oremlandii (strain OhILAs) GN=accD PE=3
SV=1
Length = 275
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 94/197 (47%), Gaps = 17/197 (8%)
Query: 41 QAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMS----------EKKIPGDSV 90
+ + NK ++ AR R+ L D TF+EYD +E C + E + D+V
Sbjct: 41 EMKENK-RMGARSRIAALIDKDTFIEYDSELES-CNPLSFPKYAEKILAAMETSMEKDAV 98
Query: 91 VTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQ 150
+TG G++ G + + + GS+ SV EKI + +++A+ P++ SGGAR+Q
Sbjct: 99 ITGEGTIRGESCVLCVMNPDFMMGSMGSVVGEKITRAIEKAIEKKLPVIIFCASGGARMQ 158
Query: 151 EGVESL---AAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLF 207
EG+ SL A S+ R L + IS++ P GG S A+ + E + +
Sbjct: 159 EGILSLMQMAKTSAALGR--LGEAGLLYISVLTDPTTGGVTASFAMLGDIIIAEPGALIG 216
Query: 208 ITGPDVIKSVTNEDISQ 224
GP VI+ + + +
Sbjct: 217 FAGPRVIEQTIRQKLPE 233
>sp|Q332W9|ACCD_LACSA Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta,
chloroplastic OS=Lactuca sativa GN=accD PE=3 SV=2
Length = 508
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 96/193 (49%), Gaps = 17/193 (8%)
Query: 48 KLTARERVELLCDPGTFVEYDMFM-EHRCVDFNMSEKKIPG------------DSVVTGR 94
K+++ +R+ELL DPGT+ D M ++F+ E+ ++V TGR
Sbjct: 275 KMSSSDRIELLIDPGTWEPMDEDMVSLDPIEFHSEEEPYKNRIDSYQRNTGLTEAVQTGR 334
Query: 95 GSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVE 154
G +NG TV I DF GGS+ SV EKI ++++ A P++ + SGGAR+QEG
Sbjct: 335 GQLNGITVAIGVMDFQFMGGSMGSVVGEKITRLIEYATKEFLPLIIVCASGGARMQEGSV 394
Query: 155 SL---AAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGP 211
SL A SS + ++ + + ++ P GG S + + E ++Y+ G
Sbjct: 395 SLMQMAKISSAL-YDYQSNKKLFYVPILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGK 453
Query: 212 DVIKSVTNEDISQ 224
VI+ N+ + +
Sbjct: 454 RVIEQTLNKTVPE 466
>sp|A5UQC0|ACCD1_ROSS1 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta 1
OS=Roseiflexus sp. (strain RS-1) GN=accD1 PE=3 SV=1
Length = 300
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 97/191 (50%), Gaps = 19/191 (9%)
Query: 48 KLTARERVELLCDPGTFVEYDMFMEHRCVDF-------NMSEKKI--------PGDSVVT 92
+LTARE + LL D G+FVE+D + VD ++ E+K+ D+++T
Sbjct: 56 RLTAREWLGLL-DDGSFVEFDAALAS--VDALGFVSPRHVYEQKLIESRQQTGLNDALIT 112
Query: 93 GRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEG 152
G++NG + + +F GGS+ S + E++ +++++A P++ +N SGGAR +EG
Sbjct: 113 SSGAINGMLLCLAVTEFEFIGGSMGSAYGERLARVIERAADARLPLLTINASGGARQEEG 172
Query: 153 VESLAAYSSV-FQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGP 211
+L + V LA+ P I+L++ PC GG + S + E + + G
Sbjct: 173 TLALLQMAKVNMALTRLAAAGQPHIALLVDPCYGGVLASYTSVADVIIAEPGARVGFAGR 232
Query: 212 DVIKSVTNEDI 222
VI+ + +
Sbjct: 233 RVIEQTIRQKL 243
>sp|A4QLK3|ACCD_LOBMA Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta,
chloroplastic OS=Lobularia maritima GN=accD PE=3 SV=1
Length = 487
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 93/193 (48%), Gaps = 17/193 (8%)
Query: 48 KLTARERVELLCDPGTFVEYDMFM-EHRCVDFNMSEKKIPG------------DSVVTGR 94
K+T+ ER+ELL DPGT+ D M + F+ E+ D+V TG
Sbjct: 251 KMTSSERIELLIDPGTWNPMDEDMVSADPIKFHSKEEPYKNRINSFQKKTGLTDAVQTGT 310
Query: 95 GSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVE 154
G +NG V + DF GGS+ SV EKI ++++ A P++ + SGGAR+QEG
Sbjct: 311 GQLNGIPVALGVMDFQFMGGSMGSVVGEKITRLIEYATNQRLPLILVCSSGGARMQEGSL 370
Query: 155 SL---AAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGP 211
SL A SSV + +S + IS++ P GG S + + E +Y+ G
Sbjct: 371 SLMQMAKISSVLC-DYQSSKKLFYISILTSPTTGGVTASFGMLGDIIIAEPYAYIAFAGK 429
Query: 212 DVIKSVTNEDISQ 224
VI+ + + +
Sbjct: 430 RVIEQTLKKAVPE 442
>sp|Q9K841|ACCD_BACHD Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197
/ FERM 7344 / JCM 9153 / C-125) GN=accD PE=3 SV=1
Length = 282
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 16/191 (8%)
Query: 48 KLTARERVELLCDPGTFVEYDMFME-HRCVDFNMSEKKIPGD--------SVVTGRGSVN 98
++ A +R+E L DPGTFVE D M + F +K+ D ++VTG G++N
Sbjct: 59 RMNAFDRIESLLDPGTFVELDKGMTTEDPLSFPTYREKVEADRKKTNLNEAIVTGEGTMN 118
Query: 99 GRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESL-- 156
G + I D GS+ SV EKI + +++A+ P + + SGGAR+QEGV SL
Sbjct: 119 GFPLVIGVMDARFRMGSMGSVVGEKITRAIERAIENKQPFLLFSASGGARMQEGVLSLMQ 178
Query: 157 -AAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPA-ITDFTFMVEHSSYLFITGPDVI 214
A S+ +R G+ IS++ P GG S A + D+ F E + + G +I
Sbjct: 179 MAKTSAALERLDRVGGLF--ISVMTHPTTGGVSASFASLGDYNF-AEPGALIGFAGRRII 235
Query: 215 KSVTNEDISQE 225
+ E++ +
Sbjct: 236 EQTIREELPND 246
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,635,811
Number of Sequences: 539616
Number of extensions: 4852421
Number of successful extensions: 11920
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 221
Number of HSP's that attempted gapping in prelim test: 10679
Number of HSP's gapped (non-prelim): 887
length of query: 314
length of database: 191,569,459
effective HSP length: 117
effective length of query: 197
effective length of database: 128,434,387
effective search space: 25301574239
effective search space used: 25301574239
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)