Query psy11283
Match_columns 314
No_of_seqs 188 out of 1878
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 22:53:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11283.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11283hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4799 Acetyl-CoA carboxylase 100.0 1.4E-78 3.1E-83 596.3 26.8 301 11-314 5-337 (526)
2 TIGR01117 mmdA methylmalonyl-C 100.0 2.5E-72 5.3E-77 561.6 32.5 295 20-314 2-328 (512)
3 PLN02820 3-methylcrotonyl-CoA 100.0 1.8E-70 3.8E-75 551.4 32.0 295 12-311 45-381 (569)
4 PF01039 Carboxyl_trans: Carbo 100.0 1.1E-65 2.3E-70 513.7 23.6 270 42-313 1-306 (493)
5 KOG0540|consensus 100.0 1.5E-63 3.2E-68 473.8 19.0 287 24-314 39-362 (536)
6 PRK07189 malonate decarboxylas 100.0 1.9E-48 4.1E-53 363.4 21.2 216 44-264 10-242 (301)
7 TIGR03133 malonate_beta malona 100.0 2.1E-47 4.5E-52 352.9 22.7 211 47-260 4-232 (274)
8 CHL00174 accD acetyl-CoA carbo 100.0 1.1E-46 2.3E-51 349.8 21.8 212 46-261 66-293 (296)
9 PRK05654 acetyl-CoA carboxylas 100.0 2.1E-45 4.5E-50 343.5 21.2 214 46-263 55-282 (292)
10 TIGR00515 accD acetyl-CoA carb 100.0 6.6E-45 1.4E-49 338.8 22.0 212 46-261 54-279 (285)
11 COG0777 AccD Acetyl-CoA carbox 100.0 3.6E-38 7.7E-43 285.5 19.9 213 45-261 55-281 (294)
12 PRK12319 acetyl-CoA carboxylas 100.0 1.6E-31 3.5E-36 245.7 22.3 191 38-245 6-213 (256)
13 KOG0368|consensus 100.0 6E-33 1.3E-37 290.0 11.9 223 86-310 1526-1858(2196)
14 CHL00198 accA acetyl-CoA carbo 100.0 4.6E-30 1E-34 241.2 22.9 187 36-245 60-269 (322)
15 TIGR00513 accA acetyl-CoA carb 100.0 1.1E-28 2.3E-33 232.0 25.9 194 37-245 58-266 (316)
16 PRK05724 acetyl-CoA carboxylas 100.0 3.7E-29 8.1E-34 235.3 22.0 193 37-245 58-266 (319)
17 PLN03229 acetyl-coenzyme A car 100.0 4.6E-29 9.9E-34 252.0 22.2 192 47-245 144-357 (762)
18 TIGR01117 mmdA methylmalonyl-C 100.0 5.4E-29 1.2E-33 249.6 21.3 198 45-262 275-496 (512)
19 PLN03230 acetyl-coenzyme A car 100.0 3.3E-27 7.1E-32 226.8 25.2 193 38-245 129-336 (431)
20 COG4799 Acetyl-CoA carboxylase 99.9 5.8E-27 1.2E-31 231.5 16.6 200 45-264 284-511 (526)
21 PLN02820 3-methylcrotonyl-CoA 99.9 9.3E-26 2E-30 227.8 18.7 194 45-263 331-556 (569)
22 KOG0540|consensus 99.9 3.4E-26 7.4E-31 218.7 14.6 207 40-264 304-527 (536)
23 PF01039 Carboxyl_trans: Carbo 99.9 6.2E-25 1.4E-29 220.1 12.9 197 46-262 255-479 (493)
24 TIGR03134 malonate_gamma malon 99.9 4.5E-22 9.8E-27 181.4 18.8 187 51-261 2-206 (238)
25 COG0825 AccA Acetyl-CoA carbox 99.9 1.6E-20 3.4E-25 172.1 16.8 161 38-213 58-228 (317)
26 PF03255 ACCA: Acetyl co-enzym 98.8 9.7E-09 2.1E-13 86.1 7.3 85 35-132 53-145 (145)
27 PF06833 MdcE: Malonate decarb 98.4 4.6E-06 9.9E-11 75.8 11.8 131 86-222 15-155 (234)
28 cd07020 Clp_protease_NfeD_1 No 98.1 5.4E-06 1.2E-10 73.2 6.3 89 114-212 8-100 (187)
29 cd06558 crotonase-like Crotona 97.9 0.00017 3.6E-09 63.2 12.3 140 112-260 19-194 (195)
30 PRK07854 enoyl-CoA hydratase; 97.9 0.00015 3.4E-09 66.5 12.4 138 112-260 20-187 (243)
31 TIGR00513 accA acetyl-CoA carb 97.9 1E-05 2.2E-10 76.9 4.6 35 277-311 80-118 (316)
32 PRK05724 acetyl-CoA carboxylas 97.9 7.6E-06 1.6E-10 77.9 3.1 35 277-311 80-118 (319)
33 PRK07112 polyketide biosynthes 97.9 0.0003 6.4E-09 65.1 13.2 146 104-261 17-198 (255)
34 PRK08150 enoyl-CoA hydratase; 97.8 0.00027 5.8E-09 65.4 12.3 145 104-260 15-197 (255)
35 PLN03230 acetyl-coenzyme A car 97.8 1.9E-05 4E-10 77.2 3.9 36 277-312 150-189 (431)
36 PRK11423 methylmalonyl-CoA dec 97.8 0.00025 5.5E-09 65.8 11.3 152 98-260 11-201 (261)
37 PRK09674 enoyl-CoA hydratase-i 97.8 0.00042 9.2E-09 64.0 12.4 139 112-260 22-197 (255)
38 PRK05869 enoyl-CoA hydratase; 97.7 0.00037 8.1E-09 63.2 11.5 147 104-258 21-198 (222)
39 PRK06142 enoyl-CoA hydratase; 97.7 0.00048 1E-08 64.2 12.4 144 103-257 18-208 (272)
40 PLN02267 enoyl-CoA hydratase/i 97.7 0.00067 1.5E-08 62.2 13.1 141 114-261 21-199 (239)
41 COG1024 CaiD Enoyl-CoA hydrata 97.7 0.00055 1.2E-08 63.2 12.6 149 102-261 15-201 (257)
42 PRK07110 polyketide biosynthes 97.7 0.00075 1.6E-08 62.1 13.2 135 113-259 26-194 (249)
43 PRK05981 enoyl-CoA hydratase; 97.7 0.00051 1.1E-08 63.8 12.1 96 112-208 24-138 (266)
44 TIGR03189 dienoyl_CoA_hyt cycl 97.7 0.00086 1.9E-08 61.9 13.3 152 97-260 7-192 (251)
45 PRK09120 p-hydroxycinnamoyl Co 97.7 0.00052 1.1E-08 64.2 12.0 151 102-260 18-209 (275)
46 PF00378 ECH: Enoyl-CoA hydrat 97.7 0.00022 4.7E-09 65.2 9.1 153 99-260 6-195 (245)
47 cd07021 Clp_protease_NfeD_like 97.7 0.00015 3.3E-09 63.7 7.8 89 114-212 8-97 (178)
48 TIGR02280 PaaB1 phenylacetate 97.7 0.00066 1.4E-08 62.7 12.2 104 103-208 11-128 (256)
49 PRK07468 enoyl-CoA hydratase; 97.7 0.00075 1.6E-08 62.6 12.6 140 113-260 26-204 (262)
50 PLN02664 enoyl-CoA hydratase/d 97.7 0.00064 1.4E-08 63.5 12.0 103 104-208 21-146 (275)
51 PRK07511 enoyl-CoA hydratase; 97.6 0.00063 1.4E-08 62.9 11.8 151 97-258 9-201 (260)
52 CHL00198 accA acetyl-CoA carbo 97.6 2.9E-05 6.3E-10 73.9 2.8 35 277-311 83-121 (322)
53 PRK08140 enoyl-CoA hydratase; 97.6 0.00071 1.5E-08 62.6 12.1 102 104-207 17-133 (262)
54 PRK08260 enoyl-CoA hydratase; 97.6 0.00091 2E-08 63.2 12.9 141 112-260 24-218 (296)
55 PRK07659 enoyl-CoA hydratase; 97.6 0.00046 1E-08 63.9 10.6 96 112-208 26-133 (260)
56 PRK05809 3-hydroxybutyryl-CoA 97.6 0.00088 1.9E-08 61.9 12.4 96 112-208 24-132 (260)
57 PRK08138 enoyl-CoA hydratase; 97.6 0.00096 2.1E-08 61.8 12.6 152 98-258 15-201 (261)
58 PRK08252 enoyl-CoA hydratase; 97.6 0.00071 1.5E-08 62.4 11.5 153 98-259 10-195 (254)
59 PRK09076 enoyl-CoA hydratase; 97.6 0.0011 2.4E-08 61.4 12.6 148 103-260 15-200 (258)
60 PRK06495 enoyl-CoA hydratase; 97.6 0.0012 2.7E-08 61.0 12.9 146 104-259 17-198 (257)
61 PRK12319 acetyl-CoA carboxylas 97.6 7.6E-05 1.6E-09 69.2 4.6 33 279-311 29-65 (256)
62 PRK06190 enoyl-CoA hydratase; 97.6 0.00098 2.1E-08 61.8 12.0 101 104-208 17-129 (258)
63 PRK08272 enoyl-CoA hydratase; 97.6 0.00077 1.7E-08 63.9 11.4 94 112-208 30-162 (302)
64 PRK05862 enoyl-CoA hydratase; 97.6 0.0013 2.7E-08 60.9 12.5 153 97-260 10-199 (257)
65 PRK06563 enoyl-CoA hydratase; 97.6 0.0016 3.5E-08 60.0 13.2 147 104-260 12-197 (255)
66 PRK08139 enoyl-CoA hydratase; 97.5 0.0011 2.3E-08 61.8 11.9 145 104-259 24-207 (266)
67 PRK07827 enoyl-CoA hydratase; 97.5 0.0014 3.1E-08 60.6 12.6 94 112-208 26-136 (260)
68 PRK06023 enoyl-CoA hydratase; 97.5 0.0016 3.5E-08 60.0 12.9 148 102-259 16-201 (251)
69 PRK07260 enoyl-CoA hydratase; 97.5 0.0015 3.3E-08 60.2 12.7 95 113-208 23-133 (255)
70 PLN02600 enoyl-CoA hydratase 97.5 0.0021 4.5E-08 59.3 13.4 139 114-260 17-193 (251)
71 PRK06213 enoyl-CoA hydratase; 97.5 0.002 4.3E-08 58.5 13.0 92 114-208 24-127 (229)
72 PRK07327 enoyl-CoA hydratase; 97.5 0.0016 3.5E-08 60.6 12.6 145 104-259 25-210 (268)
73 PRK06688 enoyl-CoA hydratase; 97.5 0.0015 3.2E-08 60.3 12.3 137 112-259 25-196 (259)
74 PRK05674 gamma-carboxygeranoyl 97.5 0.0017 3.8E-08 60.3 12.8 140 114-259 28-200 (265)
75 PRK05995 enoyl-CoA hydratase; 97.5 0.0017 3.6E-08 60.2 12.6 92 114-208 26-134 (262)
76 PRK08258 enoyl-CoA hydratase; 97.5 0.0015 3.2E-08 61.1 12.4 110 97-208 23-148 (277)
77 PRK07657 enoyl-CoA hydratase; 97.5 0.0022 4.8E-08 59.3 13.0 95 113-208 25-132 (260)
78 PRK06143 enoyl-CoA hydratase; 97.5 0.0019 4E-08 59.8 12.2 139 112-258 27-202 (256)
79 TIGR03210 badI 2-ketocyclohexa 97.5 0.0027 5.9E-08 58.7 13.2 146 104-260 15-199 (256)
80 PRK05870 enoyl-CoA hydratase; 97.4 0.0011 2.3E-08 61.1 10.2 93 113-208 24-130 (249)
81 PRK06127 enoyl-CoA hydratase; 97.4 0.0028 6.1E-08 59.0 12.9 147 104-260 24-207 (269)
82 PRK07938 enoyl-CoA hydratase; 97.4 0.0022 4.8E-08 59.0 12.1 144 104-259 15-195 (249)
83 PRK05864 enoyl-CoA hydratase; 97.4 0.0025 5.4E-08 59.6 12.5 153 104-260 23-215 (276)
84 PRK05654 acetyl-CoA carboxylas 97.4 0.00022 4.8E-09 67.4 5.4 28 287-314 107-134 (292)
85 PRK06144 enoyl-CoA hydratase; 97.4 0.0028 6.1E-08 58.8 12.8 158 97-260 14-208 (262)
86 PRK08321 naphthoate synthase; 97.4 0.0026 5.5E-08 60.4 12.6 159 98-259 32-240 (302)
87 PRK06210 enoyl-CoA hydratase; 97.4 0.0033 7.1E-08 58.6 13.1 153 97-259 11-212 (272)
88 PRK07799 enoyl-CoA hydratase; 97.4 0.0029 6.2E-08 58.7 12.7 153 98-259 12-204 (263)
89 PRK07509 enoyl-CoA hydratase; 97.4 0.0025 5.4E-08 59.0 12.1 149 103-260 15-205 (262)
90 PRK07396 dihydroxynaphthoic ac 97.4 0.0027 5.9E-08 59.2 12.5 153 97-260 19-212 (273)
91 TIGR01929 menB naphthoate synt 97.4 0.0019 4E-08 59.9 11.3 146 104-260 16-202 (259)
92 PLN03229 acetyl-coenzyme A car 97.4 0.0001 2.2E-09 76.4 2.9 35 277-311 171-209 (762)
93 PRK09245 enoyl-CoA hydratase; 97.4 0.0022 4.7E-08 59.5 11.4 104 103-208 15-138 (266)
94 PRK08259 enoyl-CoA hydratase; 97.4 0.0019 4E-08 59.7 10.9 141 112-260 23-198 (254)
95 PRK05980 enoyl-CoA hydratase; 97.3 0.004 8.6E-08 57.6 12.5 104 103-208 15-135 (260)
96 PLN02888 enoyl-CoA hydratase 97.3 0.0049 1.1E-07 57.3 12.8 143 104-258 23-198 (265)
97 PRK07658 enoyl-CoA hydratase; 97.3 0.0038 8.2E-08 57.6 12.0 143 104-258 15-197 (257)
98 cd07015 Clp_protease_NfeD Nodu 97.3 0.00087 1.9E-08 58.6 7.2 89 114-212 8-100 (172)
99 PRK06072 enoyl-CoA hydratase; 97.2 0.004 8.7E-08 57.3 11.8 141 112-260 20-190 (248)
100 PRK03580 carnitinyl-CoA dehydr 97.2 0.005 1.1E-07 57.1 12.4 106 98-208 10-129 (261)
101 PRK08290 enoyl-CoA hydratase; 97.2 0.0045 9.8E-08 58.3 12.1 137 113-258 25-215 (288)
102 PRK06494 enoyl-CoA hydratase; 97.2 0.0059 1.3E-07 56.5 12.5 109 98-208 11-129 (259)
103 TIGR00515 accD acetyl-CoA carb 97.2 0.00051 1.1E-08 64.7 5.4 28 287-314 106-133 (285)
104 PLN02921 naphthoate synthase 97.1 0.0091 2E-07 57.4 13.4 148 104-260 80-266 (327)
105 PLN03214 probable enoyl-CoA hy 97.1 0.0094 2E-07 55.9 12.7 95 113-208 32-142 (278)
106 cd07016 S14_ClpP_1 Caseinolyti 97.1 0.00057 1.2E-08 58.5 4.0 88 114-212 7-97 (160)
107 KOG0368|consensus 97.0 0.00059 1.3E-08 74.7 4.5 116 46-180 1800-1951(2196)
108 PRK12478 enoyl-CoA hydratase; 97.0 0.0088 1.9E-07 56.7 11.7 156 97-259 11-213 (298)
109 PRK08788 enoyl-CoA hydratase; 96.9 0.023 4.9E-07 53.7 13.3 137 114-258 38-224 (287)
110 TIGR03222 benzo_boxC benzoyl-C 96.9 0.018 4E-07 59.0 13.6 144 113-263 42-232 (546)
111 cd07014 S49_SppA Signal peptid 96.9 0.0066 1.4E-07 52.9 9.0 92 114-212 17-110 (177)
112 cd00394 Clp_protease_like Case 96.8 0.0047 1E-07 52.7 7.0 91 113-213 5-97 (161)
113 PRK05617 3-hydroxyisobutyryl-C 96.8 0.032 7E-07 53.9 13.6 108 97-208 9-135 (342)
114 COG1030 NfeD Membrane-bound se 96.7 0.0087 1.9E-07 59.1 8.9 99 98-211 24-126 (436)
115 PRK11730 fadB multifunctional 96.6 0.024 5.3E-07 60.0 12.6 139 113-259 28-206 (715)
116 TIGR03200 dearomat_oah 6-oxocy 96.6 0.028 6E-07 54.6 11.8 127 114-248 50-214 (360)
117 cd07019 S49_SppA_1 Signal pept 96.6 0.02 4.3E-07 51.5 9.9 87 118-211 20-108 (211)
118 PLN02874 3-hydroxyisobutyryl-C 96.5 0.044 9.5E-07 53.7 13.0 110 97-208 17-140 (379)
119 cd07023 S49_Sppa_N_C Signal pe 96.5 0.012 2.6E-07 52.6 8.0 88 118-212 16-105 (208)
120 TIGR02437 FadB fatty oxidation 96.5 0.06 1.3E-06 57.1 14.3 94 112-208 27-137 (714)
121 KOG1680|consensus 96.4 0.041 8.9E-07 51.3 10.9 139 114-260 59-232 (290)
122 PLN02157 3-hydroxyisobutyryl-C 96.3 0.065 1.4E-06 53.0 12.8 149 96-248 42-222 (401)
123 TIGR02440 FadJ fatty oxidation 96.3 0.054 1.2E-06 57.2 12.9 137 113-259 23-198 (699)
124 PF03255 ACCA: Acetyl co-enzym 96.2 0.0062 1.3E-07 51.4 4.3 34 277-310 77-114 (145)
125 cd07022 S49_Sppa_36K_type Sign 96.2 0.034 7.3E-07 50.0 9.4 90 114-211 20-111 (214)
126 TIGR00706 SppA_dom signal pept 96.2 0.025 5.4E-07 50.7 8.5 86 120-213 14-101 (207)
127 PRK08184 benzoyl-CoA-dihydrodi 96.2 0.0085 1.8E-07 61.5 5.9 146 114-266 47-239 (550)
128 TIGR02441 fa_ox_alpha_mit fatt 96.2 0.089 1.9E-06 56.0 13.7 94 113-208 35-145 (737)
129 PLN02851 3-hydroxyisobutyryl-C 96.1 0.12 2.6E-06 51.2 13.6 141 103-247 54-226 (407)
130 PRK11154 fadJ multifunctional 96.0 0.11 2.5E-06 54.9 13.5 149 104-260 19-204 (708)
131 PRK07189 malonate decarboxylas 95.9 0.013 2.9E-07 55.6 5.3 30 285-314 52-81 (301)
132 PRK08184 benzoyl-CoA-dihydrodi 95.8 0.071 1.5E-06 54.8 10.6 154 97-260 268-486 (550)
133 cd07013 S14_ClpP Caseinolytic 95.8 0.029 6.4E-07 48.4 6.6 90 112-211 5-98 (162)
134 COG0447 MenB Dihydroxynaphthoi 95.5 0.023 4.9E-07 51.4 5.1 164 45-263 42-224 (282)
135 KOG0016|consensus 95.5 0.24 5.1E-06 45.9 11.8 156 96-260 13-212 (266)
136 TIGR03222 benzo_boxC benzoyl-C 95.4 0.14 3.1E-06 52.6 11.0 137 114-260 293-482 (546)
137 PRK12553 ATP-dependent Clp pro 95.1 0.041 8.8E-07 49.5 5.5 91 112-212 40-134 (207)
138 PLN02988 3-hydroxyisobutyryl-C 95.1 0.35 7.7E-06 47.5 12.5 109 98-208 16-140 (381)
139 cd07018 S49_SppA_67K_type Sign 94.6 0.19 4.2E-06 45.4 8.6 90 115-212 25-116 (222)
140 COG0825 AccA Acetyl-CoA carbox 94.6 0.016 3.5E-07 54.2 1.6 34 277-310 79-116 (317)
141 CHL00174 accD acetyl-CoA carbo 94.6 0.063 1.4E-06 50.8 5.4 28 287-314 119-146 (296)
142 PRK00277 clpP ATP-dependent Cl 94.5 0.13 2.8E-06 46.0 7.1 92 111-212 35-130 (200)
143 cd07017 S14_ClpP_2 Caseinolyti 94.3 0.058 1.3E-06 46.9 4.3 90 112-211 14-107 (171)
144 COG0616 SppA Periplasmic serin 94.0 0.35 7.6E-06 46.3 9.4 85 119-211 80-166 (317)
145 TIGR00705 SppA_67K signal pept 93.9 0.31 6.8E-06 50.5 9.3 81 119-206 329-411 (584)
146 PRK14512 ATP-dependent Clp pro 93.2 0.29 6.4E-06 43.7 6.9 89 113-211 29-121 (197)
147 PRK11778 putative inner membra 93.1 0.44 9.5E-06 45.9 8.3 82 122-211 111-192 (330)
148 TIGR03133 malonate_beta malona 92.4 0.19 4.2E-06 47.1 4.8 32 283-314 41-72 (274)
149 TIGR00493 clpP ATP-dependent C 92.2 0.52 1.1E-05 41.8 7.0 91 112-212 31-125 (191)
150 PRK12551 ATP-dependent Clp pro 91.3 0.7 1.5E-05 41.3 6.8 91 111-211 29-123 (196)
151 PF00574 CLP_protease: Clp pro 91.1 0.31 6.6E-06 42.5 4.4 90 112-211 21-114 (182)
152 PF01972 SDH_sah: Serine dehyd 90.6 0.62 1.3E-05 43.7 6.0 88 114-212 70-157 (285)
153 PRK14514 ATP-dependent Clp pro 90.1 1.1 2.3E-05 40.9 7.0 91 111-211 58-152 (221)
154 CHL00028 clpP ATP-dependent Cl 89.7 0.99 2.1E-05 40.4 6.4 91 111-211 34-128 (200)
155 KOG1679|consensus 89.6 1.6 3.4E-05 39.7 7.4 142 113-259 52-232 (291)
156 PRK14513 ATP-dependent Clp pro 86.8 2.6 5.7E-05 37.8 7.2 92 111-212 31-126 (201)
157 PRK10949 protease 4; Provision 84.1 6.5 0.00014 41.2 9.6 79 118-202 346-426 (618)
158 KOG1682|consensus 82.9 4.4 9.6E-05 36.6 6.7 142 98-248 40-214 (287)
159 COG0777 AccD Acetyl-CoA carbox 75.5 4.5 9.7E-05 38.0 4.5 26 289-314 110-135 (294)
160 PF01343 Peptidase_S49: Peptid 72.2 2.6 5.6E-05 35.8 2.0 41 170-211 4-44 (154)
161 COG3222 Uncharacterized protei 70.1 12 0.00025 33.3 5.5 83 119-217 88-171 (211)
162 COG0740 ClpP Protease subunit 67.9 16 0.00034 32.8 6.1 88 114-211 34-125 (200)
163 PRK12552 ATP-dependent Clp pro 59.5 35 0.00075 31.1 6.8 90 120-211 53-147 (222)
164 COG0552 FtsY Signal recognitio 55.1 60 0.0013 31.5 7.9 53 97-152 165-236 (340)
165 PRK13291 metal-dependent hydro 53.8 16 0.00035 31.7 3.6 51 12-62 20-70 (173)
166 COG4245 TerY Uncharacterized p 52.2 32 0.00069 30.8 5.1 30 134-163 2-31 (207)
167 PF13524 Glyco_trans_1_2: Glyc 48.0 45 0.00097 24.9 4.9 49 5-60 40-92 (92)
168 PF11020 DUF2610: Domain of un 38.6 37 0.00079 26.0 2.9 29 110-138 40-68 (82)
169 PF14307 Glyco_tran_WbsX: Glyc 37.7 63 0.0014 31.1 5.3 44 96-145 155-198 (345)
170 KOG1681|consensus 36.8 17 0.00036 33.6 1.0 88 168-258 122-227 (292)
171 PRK12311 rpsB 30S ribosomal pr 36.4 34 0.00073 33.1 3.1 42 92-145 144-185 (326)
172 PRK06186 hypothetical protein; 34.7 36 0.00078 31.2 2.9 30 113-143 61-90 (229)
173 KOG0781|consensus 34.7 1.2E+02 0.0025 31.2 6.6 52 98-152 405-481 (587)
174 PRK04020 rps2P 30S ribosomal p 33.0 38 0.00082 30.5 2.7 34 100-145 114-147 (204)
175 TIGR01012 Sa_S2_E_A ribosomal 32.7 38 0.00082 30.3 2.6 35 99-145 107-141 (196)
176 cd02013 TPP_Xsc_like Thiamine 31.7 54 0.0012 28.7 3.5 39 99-147 71-110 (196)
177 CHL00067 rps2 ribosomal protei 31.0 42 0.0009 30.7 2.7 40 94-145 155-194 (230)
178 TIGR01011 rpsB_bact ribosomal 30.9 42 0.00091 30.5 2.7 41 93-145 148-188 (225)
179 COG0052 RpsB Ribosomal protein 30.8 55 0.0012 30.4 3.4 42 91-144 147-188 (252)
180 cd01425 RPS2 Ribosomal protein 30.4 44 0.00095 29.5 2.7 37 97-145 124-160 (193)
181 PRK05299 rpsB 30S ribosomal pr 30.1 44 0.00095 31.1 2.7 41 93-145 150-190 (258)
182 cd07945 DRE_TIM_CMS Leptospira 29.9 3.2E+02 0.0069 25.6 8.5 79 99-188 128-206 (280)
183 PTZ00254 40S ribosomal protein 28.3 54 0.0012 30.5 2.9 20 126-145 132-151 (249)
184 PF00318 Ribosomal_S2: Ribosom 28.2 52 0.0011 29.5 2.8 21 125-145 156-176 (211)
185 COG2099 CobK Precorrin-6x redu 28.1 25 0.00054 32.8 0.7 92 47-143 10-101 (257)
186 PF00682 HMGL-like: HMGL-like 27.5 3.1E+02 0.0068 24.3 7.8 62 119-187 134-195 (237)
187 cd02012 TPP_TK Thiamine pyroph 27.4 3.8E+02 0.0083 24.3 8.5 43 99-149 127-170 (255)
188 PRK10342 glycerate kinase I; P 27.4 39 0.00084 33.4 1.9 44 85-145 283-326 (381)
189 cd07944 DRE_TIM_HOA_like 4-hyd 27.3 1.2E+02 0.0026 28.1 5.1 75 99-187 122-197 (266)
190 KOG0073|consensus 27.3 1.1E+02 0.0024 26.9 4.4 60 96-156 114-173 (185)
191 cd05014 SIS_Kpsf KpsF-like pro 27.0 88 0.0019 24.7 3.7 28 122-149 61-88 (128)
192 PF10809 DUF2732: Protein of u 26.5 1.9E+02 0.0042 21.9 5.1 61 1-61 2-65 (77)
193 KOG0840|consensus 26.0 2E+02 0.0043 27.0 6.1 88 111-208 96-187 (275)
194 COG1422 Predicted membrane pro 25.7 1.1E+02 0.0025 27.4 4.3 36 12-47 72-107 (201)
195 cd07939 DRE_TIM_NifV Streptomy 25.6 3.2E+02 0.0069 24.9 7.6 62 119-188 136-197 (259)
196 TIGR03217 4OH_2_O_val_ald 4-hy 25.3 1.5E+02 0.0032 28.6 5.4 62 119-187 140-202 (333)
197 PRK10949 protease 4; Provision 25.0 4E+02 0.0088 28.0 9.0 85 118-210 94-181 (618)
198 TIGR00705 SppA_67K signal pept 25.0 3.4E+02 0.0075 28.3 8.4 85 118-210 75-162 (584)
199 PF02601 Exonuc_VII_L: Exonucl 24.8 1.7E+02 0.0037 27.5 5.8 55 118-179 54-114 (319)
200 PRK13602 putative ribosomal pr 24.7 1.2E+02 0.0026 22.9 3.8 34 100-143 28-61 (82)
201 COG1929 Glycerate kinase [Carb 24.6 47 0.001 32.5 1.9 47 85-148 283-329 (378)
202 PF10609 ParA: ParA/MinD ATPas 24.3 70 0.0015 24.5 2.4 26 119-144 37-62 (81)
203 cd07943 DRE_TIM_HOA 4-hydroxy- 23.3 1.4E+02 0.003 27.4 4.7 60 121-187 140-199 (263)
204 PRK13600 putative ribosomal pr 23.2 90 0.002 24.0 2.9 33 100-142 30-62 (84)
205 TIGR03614 RutB pyrimidine util 22.4 1.3E+02 0.0028 27.0 4.2 26 119-144 46-71 (226)
206 PRK09722 allulose-6-phosphate 22.4 2.5E+02 0.0053 25.7 6.1 107 36-145 47-177 (229)
207 PRK09932 glycerate kinase II; 22.2 57 0.0012 32.2 2.0 43 85-144 283-325 (381)
208 cd05005 SIS_PHI Hexulose-6-pho 21.7 1.2E+02 0.0026 25.9 3.8 29 121-149 88-116 (179)
209 PRK11440 putative hydrolase; P 21.5 1.1E+02 0.0023 26.5 3.4 27 118-144 31-57 (188)
210 cd02007 TPP_DXS Thiamine pyrop 21.4 2.2E+02 0.0047 25.0 5.4 40 100-147 98-137 (195)
211 PF01380 SIS: SIS domain SIS d 21.3 1.3E+02 0.0028 23.6 3.6 28 122-149 67-94 (131)
212 TIGR03181 PDH_E1_alph_x pyruva 21.3 1.6E+02 0.0034 28.4 4.8 42 98-147 143-184 (341)
213 PRK08195 4-hyroxy-2-oxovalerat 20.9 1.5E+02 0.0033 28.5 4.7 62 119-187 141-203 (337)
214 KOG4031|consensus 20.6 1.9E+02 0.0042 26.1 4.7 48 14-61 138-188 (216)
215 COG1570 XseA Exonuclease VII, 20.5 1.9E+02 0.0041 29.1 5.3 66 104-179 165-232 (440)
216 TIGR02751 PEPCase_arch phospho 20.5 1.9E+02 0.0041 29.7 5.3 51 97-147 202-254 (506)
217 PF10079 DUF2317: Uncharacteri 20.2 1E+02 0.0022 31.9 3.4 61 6-68 26-90 (542)
218 PLN02743 nicotinamidase 20.1 1.1E+02 0.0024 28.0 3.3 25 121-145 60-84 (239)
No 1
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=100.00 E-value=1.4e-78 Score=596.27 Aligned_cols=301 Identities=53% Similarity=0.886 Sum_probs=284.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHhcCCCCHHHHHHhhcCCCcceeecccccccccCcccccCCCCCCcE
Q psy11283 11 YNDVDHLMRVRGQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSV 90 (314)
Q Consensus 11 ~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~l~arerI~~L~D~gsf~E~~~~~~~~~~~~~~~~~~~~~~gv 90 (314)
..+...+...++||+++++++..+|++++++++|++||+|+||||+.|+|+|||.|+++++.+.. +...+..+++|+
T Consensus 5 ~~~~~~~~~~~~e~~~~~~~~~~~gg~~~~~~~~~~GkltaReRv~~LlD~Gsf~El~~~a~~~~---~~~~~~~~~dGv 81 (526)
T COG4799 5 GMVAMTMAEKVAELRERRAIAVAGGGEKAVEKQHGKGKLTARERVELLLDPGSFLELGALAGHRM---GGDANELPGDGV 81 (526)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCHHHhhhccccCcCcHHHHHHHHcCCCchhhhhhhhhccc---ccccccCCCCee
Confidence 45677889999999999999999999999999999999999999999999999999999988754 223345789999
Q ss_pred EEEEEEECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhc
Q psy11283 91 VTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILAS 170 (314)
Q Consensus 91 VtG~G~I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~ 170 (314)
|||+|+||||+|+++++|+|++|||+++.+++|+.|++++|.++++|+|+|.||+|+|+|+|..++.+++++|++++++|
T Consensus 82 VtG~G~i~Gr~~~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgGari~~~v~~l~g~g~iF~~~a~~S 161 (526)
T COG4799 82 VTGIGTINGRKVFVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSGGARIQEGVPSLAGYGRIFYRNARAS 161 (526)
T ss_pred EEeeeeeCCeEEEEEEecCceecccccccccchHHHHHHHHHHcCCCEEEEEcccccccccCccccccchHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEccHhhhhhhhcccCCccccCCchhhccccCceeeEecCHHHH
Q psy11283 171 GVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDA 250 (314)
Q Consensus 171 ~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~GP~vv~~~~ge~v~~~~lGGa~~h~~~~Gv~d~~~~de~~a 250 (314)
+.||||++|+|+|+||++|+++++|++||++++++||++||++||.+|||+++.++|||+++|+.+||++|++++||.++
T Consensus 162 g~IPqIsvv~G~c~gGgaY~pal~D~~imv~~~~~mfltGP~~ik~vtGe~V~~e~LGGa~vh~~~sGva~~~a~dd~~A 241 (526)
T COG4799 162 GVIPQISVVMGPCAGGGAYSPALTDFVIMVRDQSYMFLTGPPVIKAVTGEEVSAEELGGAQVHARKSGVADLLAEDDEDA 241 (526)
T ss_pred cCCCEEEEEEecCcccccccccccceEEEEcCCccEEeeCHHHHHhhcCcEeehhhccchhhhcccccceeeeecCHHHH
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccC--------------------------------CCCCceeEecccCCCceeEEEEEE
Q psy11283 251 IQNVRHLLGFLPMNNTQKPPIRRC--------------------------------YDSREFFEIQPKYAKNIIVGFARI 298 (314)
Q Consensus 251 ~~~ir~~l~~lP~~~~~~~p~~~~--------------------------------~d~~~f~E~~~~~a~~vvtg~arl 298 (314)
++.+|+||+|||+|+.+++|+.+. .|++||+|+|+.||+++|||||||
T Consensus 242 i~~vr~~lsylp~~~~~~~p~~~~~~~~~~~~~~l~~ivP~d~~~pYDvrevI~rl~D~~~F~E~~~~~a~~iV~GfaRi 321 (526)
T COG4799 242 IELVRRLLSYLPSNNREPPPVVPTPDEPDRDDEELDSIVPDDPRKPYDVREVIARLVDDGEFLEFKAGYAKNIVTGFARI 321 (526)
T ss_pred HHHHHHHHHhcCccCCCCCCcCCCCCCcccChhhhcccCCCCCCccccHHHHHHHhcCCccHHHHHhhhCcceEEEEEEE
Confidence 999999999999999888775311 137899999999999999999999
Q ss_pred CCeEEEEEeeCCccCC
Q psy11283 299 NGHSVGIVANQPKVAA 314 (314)
Q Consensus 299 ~G~~VGvvAn~p~~~~ 314 (314)
+|+|||||||||++++
T Consensus 322 ~G~pVGiIANqp~~~~ 337 (526)
T COG4799 322 DGRPVGIIANQPRHLG 337 (526)
T ss_pred CCEEEEEEecCccccc
Confidence 9999999999999864
No 2
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=100.00 E-value=2.5e-72 Score=561.63 Aligned_cols=295 Identities=59% Similarity=0.977 Sum_probs=274.2
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHhcCCCCHHHHHHhhcCCCcceeecccccccccCcccccCCCCCCcEEEEEEEECC
Q psy11283 20 VRGQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNG 99 (314)
Q Consensus 20 ~~~~l~~~~~~~~~~g~~~~~~~~~~~g~l~arerI~~L~D~gsf~E~~~~~~~~~~~~~~~~~~~~~~gvVtG~G~I~G 99 (314)
.+++|++|++.++++|++++++|||++|++++||||+.|+|+|||.|++.++.+....|+.+.+..++++||||+|+|+|
T Consensus 2 ~~~~l~~~~~~~~~~g~~~~~~r~~~~g~l~areRi~~LlD~gsF~E~~~~~~~~~~~~~~~~~~~~~dgvVtG~G~v~G 81 (512)
T TIGR01117 2 KIEELHEKKEKIKQGGGEKRIEKQHAQGKMTARERLALLFDPGSFVEIDQFVKHRCTNFGMDKKELPAEGVVTGYGTIDG 81 (512)
T ss_pred hHHHHHHHHHHHHhcCChhhHHhHHhcCCCCHHHHHHHhcCCCcEEEecCccccCCCCccccccCCCCceEEEEEEEECC
Confidence 57899999999999999999999999999999999999999999999999886544445444456789999999999999
Q ss_pred EEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEE
Q psy11283 100 RTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLI 179 (314)
Q Consensus 100 r~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv 179 (314)
++|+|+++|+||+|||+|+.+++|+.|++++|.++++|+|+|.||+|+||||+..+|.++++++..+..+++.||+|+++
T Consensus 82 r~v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~lPlV~l~dSgGarm~eg~~~l~~~~~~~~~~~~~s~~iP~Isvv 161 (512)
T TIGR01117 82 RLVYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMGAPVVGLNDSGGARIQEAVDALKGYGDIFYRNTIASGVVPQISAI 161 (512)
T ss_pred EEEEEEEECCcccccCCCHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCccccchhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998877888999999999
Q ss_pred eCCCCccccccccCCCEEEEecCceeEEEccHhhhhhhhcccCCccccCCchhhccccCceeeEecCHHHHHHHHHHHHh
Q psy11283 180 LGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLG 259 (314)
Q Consensus 180 ~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~GP~vv~~~~ge~v~~~~lGGa~~h~~~~Gv~d~~~~de~~a~~~ir~~l~ 259 (314)
+|+|+||++|+++++|++||++++++|+++||++|++++||++++++|||+++|+..||++|++++||.++++.+|+||+
T Consensus 162 ~G~~~GG~a~~~al~D~vim~~~~a~i~~aGP~vv~~~~Ge~v~~e~lGGa~~h~~~sGv~d~~~~de~ea~~~~r~~ls 241 (512)
T TIGR01117 162 MGPCAGGAVYSPALTDFIYMVDNTSQMFITGPQVIKTVTGEEVTAEQLGGAMAHNSVSGVAHFIAEDDDDCIMLIRRLLS 241 (512)
T ss_pred ecCCCcHHHHHHHhcCceEEeccceEEEecChHHHHhhcCcccchhhcchHHHhccccceeEEecCChHHHHHHHHHHHH
Confidence 99999999999999999999998889999999999999999999999999999998999999999999999999999999
Q ss_pred cCCCCCCCCCCCccC--------------------------------CCCCceeEecccCCCceeEEEEEECCeEEEEEe
Q psy11283 260 FLPMNNTQKPPIRRC--------------------------------YDSREFFEIQPKYAKNIIVGFARINGHSVGIVA 307 (314)
Q Consensus 260 ~lP~~~~~~~p~~~~--------------------------------~d~~~f~E~~~~~a~~vvtg~arl~G~~VGvvA 307 (314)
|||+|+.+.+|..++ .|.++|+|+++.||+++||||+||+|+||||||
T Consensus 242 ~lp~~~~~~~p~~~~~~~~~~~~~~l~~~iP~~~~~~~d~r~~i~~l~D~~sf~El~~~~g~~vVtG~gri~G~~V~vvA 321 (512)
T TIGR01117 242 FLPSNNMEKAPLVKTGDDPTRETPELYDLLPDNPNKPYDMRDVITAIVDNGDYLEVQPYYAPNIITCFARINGQSVGIIA 321 (512)
T ss_pred hCCcCCCCCCCCCCCCCCccccchhhhhhCCCCCCCCCCHHHHHHHhCCCCceEEeeccCCCcEEEEEEEECCEEEEEEE
Confidence 999998765542211 136799999999999999999999999999999
Q ss_pred eCCccCC
Q psy11283 308 NQPKVAA 314 (314)
Q Consensus 308 n~p~~~~ 314 (314)
|||.+++
T Consensus 322 nd~~~~~ 328 (512)
T TIGR01117 322 NQPKVMA 328 (512)
T ss_pred ecccccc
Confidence 9998764
No 3
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=100.00 E-value=1.8e-70 Score=551.37 Aligned_cols=295 Identities=31% Similarity=0.569 Sum_probs=266.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHhcCCCCHHHHHHhhcCCCc-ceeecccccccccCcccccCCCCCCcE
Q psy11283 12 NDVDHLMRVRGQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGT-FVEYDMFMEHRCVDFNMSEKKIPGDSV 90 (314)
Q Consensus 12 ~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~l~arerI~~L~D~gs-f~E~~~~~~~~~~~~~~~~~~~~~~gv 90 (314)
.|+++|.+.+++|++|+++++++|++++++|||++||+++||||+.|+|+|| |.|++.+..+.. ..++.+++||
T Consensus 45 ~n~~~~~~~~~~l~~~~~~~~~~gg~~~v~r~~~~gkltaReRI~~LlD~gS~F~El~~lag~~~-----y~~~~~~dgV 119 (569)
T PLN02820 45 ANSKAMEGLLSELRSHVAKVRAGGGPEAVKRHRSRNKLLPRERIDRLLDPGSPFLELSQLAGHEL-----YGEDLPSGGI 119 (569)
T ss_pred hCHHHHHHHHHHHHHHHHHHHhcCCHhHHHhhhhcCCCCHHHHHHHHcCCCCCeEEchhhccCCc-----ccccCCCCeE
Confidence 4678899999999999999999999999999999999999999999999999 999998765421 1234678999
Q ss_pred EEEEEEECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhH--H-hhHHHHHHHHH
Q psy11283 91 VTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVES--L-AAYSSVFQRNI 167 (314)
Q Consensus 91 VtG~G~I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~--l-~~~~~~~~~~~ 167 (314)
|||+|+|+|++|+|+++|+||+|||+++.+++|+.|++++|.++++|+|+|+||+|+||+++.+. + .+++++|.++.
T Consensus 120 VtG~G~V~Gr~V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~ 199 (569)
T PLN02820 120 VTGIGPVHGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCRLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQA 199 (569)
T ss_pred EEEEEEECCEEEEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999554333 2 57899998877
Q ss_pred Hhc-CCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEccHhhhhhhhcccCCccccCCchhhccccCceeeEecC
Q psy11283 168 LAS-GVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSN 246 (314)
Q Consensus 168 ~~~-~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~GP~vv~~~~ge~v~~~~lGGa~~h~~~~Gv~d~~~~d 246 (314)
..+ .+||+|++|+|+|+||++|+++++|++||++++++|+++||++|+.++||++++++|||+++|+..||++|++++|
T Consensus 200 ~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~aGP~vV~~~~Ge~v~~eeLGGa~~h~~~sGv~d~~~~d 279 (569)
T PLN02820 200 RMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFLAGPPLVKAATGEEVSAEDLGGADVHCKVSGVSDHFAQD 279 (569)
T ss_pred HHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEecCHHHHHhhcCcccCHHHhCCHHHhcccccccccccCc
Confidence 655 6799999999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCC---------CCC----CCccC------------------------CCCCceeEecccCCC
Q psy11283 247 DIDAIQNVRHLLGFLPMNNT---------QKP----PIRRC------------------------YDSREFFEIQPKYAK 289 (314)
Q Consensus 247 e~~a~~~ir~~l~~lP~~~~---------~~~----p~~~~------------------------~d~~~f~E~~~~~a~ 289 (314)
|.++++.+|++|+|||+|+. +.+ |..+. .|.+||+|+++.||+
T Consensus 280 e~~a~~~~R~lls~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ivP~~~~~~yD~r~vi~~ivD~~sf~E~~~~~g~ 359 (569)
T PLN02820 280 ELHALAIGRNIVKNLHLAAKQGMENTLGSKNPEYKEPLYDVKELRGIVPADHKQSFDVRSVIARIVDGSEFDEFKKNYGT 359 (569)
T ss_pred hHHHHHHHHHHHHhcCcCCcccccccccCCCCCCcCcccChhhHhhccCCCCCCCCCHHHHHHHhcCCceeEEecccCCC
Confidence 99999999999999999873 111 11100 148899999999999
Q ss_pred ceeEEEEEECCeEEEEEeeCCc
Q psy11283 290 NIIVGFARINGHSVGIVANQPK 311 (314)
Q Consensus 290 ~vvtg~arl~G~~VGvvAn~p~ 311 (314)
++|||||||+|+||||||||-.
T Consensus 360 ~iVtG~aRi~G~~VgvvAn~g~ 381 (569)
T PLN02820 360 TLVTGFARIYGQPVGIIGNNGI 381 (569)
T ss_pred cEEEEEEEECCEEEEEEEECCc
Confidence 9999999999999999999854
No 4
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=100.00 E-value=1.1e-65 Score=513.70 Aligned_cols=270 Identities=47% Similarity=0.834 Sum_probs=244.3
Q ss_pred HHHhcCCCCHHHHHHhhcCCCcceeecccccccccCcccccCCCCCCcEEEEEEEECCEEEEEEEEcccccCCCcCHHHH
Q psy11283 42 AQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHA 121 (314)
Q Consensus 42 ~~~~~g~l~arerI~~L~D~gsf~E~~~~~~~~~~~~~~~~~~~~~~gvVtG~G~I~Gr~v~v~a~D~t~~gGs~g~~~~ 121 (314)
|||++||+++||||+.|+|+|||.|++.+..+...+++.+ + .++++||||+|+|+|++|+|+++|+||+|||+++.++
T Consensus 1 ~~~~~Gk~~areRi~~L~D~gSF~E~~~~~~~~~~~~~~~-~-~p~~gvvtG~G~I~G~~v~v~a~D~t~~gGs~g~~~~ 78 (493)
T PF01039_consen 1 KQHARGKLTARERIDLLLDPGSFRELGDLAGAARYKFGRE-K-TPGDGVVTGIGKINGRPVVVIAQDFTVLGGSVGEVHG 78 (493)
T ss_dssp HHHHTTEEEHHHHHHHHSGTTEBEEESTTHHTTHCGGGGG-H--TTTTEEEEEEEETTEEEEEEEEETTSGGGTBSHHHH
T ss_pred CccccCCcCHHHHHHHhcCCCCCcCchHHHhccccccccc-c-CCCCcEEEEEEeeCCeeEEEEEeccceecCCCCcccc
Confidence 7999999999999999999999999998876544444331 2 6899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEecCCCc--ccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCccccccccCCCEEEE
Q psy11283 122 EKICKIMDQAMLTGAPIVGLNDSGGA--RIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFM 199 (314)
Q Consensus 122 ~K~~r~~~~A~~~~lPvV~l~ds~Ga--rl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~ 199 (314)
+|+.|++++|.++++|+|+|.||+|+ |+||++.+|.++++++..+.+.++.||+|++++|+|+||++|.++++|++||
T Consensus 79 ~Ki~ra~~~A~~~~~P~v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~~iP~I~vv~G~~~Gg~A~~~~~~d~~i~ 158 (493)
T PF01039_consen 79 EKIARAIELALENGLPLVYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSGGIPQISVVTGPCTGGGAYLAALSDFVIM 158 (493)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHTTS-EEEEEESEEEGGGGHHHHHSSEEEE
T ss_pred eeeehHHHHHHHcCCCcEEeccccccccccchhhhhhhhhHHHHHHHHHHhcCCCeEEEEccccccchhhcccccCcccc
Confidence 99999999999999999999999999 9999999999999999998888889999999999999999999999999999
Q ss_pred ecCceeEEEccHhhhhhhhcccCCccccCCchhhccccCceeeEecCHHHHHHHHHHHHhcCC---CCCCCCCCCccC--
Q psy11283 200 VEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLP---MNNTQKPPIRRC-- 274 (314)
Q Consensus 200 ~~~~a~i~~~GP~vv~~~~ge~v~~~~lGGa~~h~~~~Gv~d~~~~de~~a~~~ir~~l~~lP---~~~~~~~p~~~~-- 274 (314)
++++++|+++||++|++++||+++.++|||+++|+..+|++|++++||+++++.+|+||+||| .++.+++|..++
T Consensus 159 ~~~~a~i~l~GP~vv~~~~Ge~~~~~~lgG~~~h~~~sG~~d~v~~de~~a~~~ir~~ls~lp~~~~~~~~~~p~~~~~d 238 (493)
T PF01039_consen 159 VKGTARIFLAGPRVVESATGEEVDSEELGGADVHAAKSGVVDYVVDDEEDALAQIRRLLSYLPSPASNNFEDPPRVPTSD 238 (493)
T ss_dssp ETTTCEEESSTHHHHHHHHSSCTSHHHHHBHHHHHHTSSSSSEEESSHHHHHHHHHHHHHTS-SSTSSTTSS--BSSSSS
T ss_pred CccceEEEeccccccccccCccccchhhhhhhhhcccCCCceEEEechHHHHHHHHHhhcccccccccccCCCcccccCC
Confidence 998799999999999999999999999999999999999999999999999999999999999 554434433221
Q ss_pred -----------------------------CCCCceeEecccCCCceeEEEEEECCeEEEEEeeCCccC
Q psy11283 275 -----------------------------YDSREFFEIQPKYAKNIIVGFARINGHSVGIVANQPKVA 313 (314)
Q Consensus 275 -----------------------------~d~~~f~E~~~~~a~~vvtg~arl~G~~VGvvAn~p~~~ 313 (314)
.|.++|+|++++||+++|||||||+|+|||||||||+++
T Consensus 239 ~~~~~~~l~~~~P~~~~~~yD~r~ii~~i~D~~~f~E~~~~~g~~~vtg~arl~G~pVGiian~~~~~ 306 (493)
T PF01039_consen 239 PPDRDEELDSIIPDDRRRPYDMRDIIARIVDDGSFFELKPGYGKNIVTGFARLGGRPVGIIANNPRQR 306 (493)
T ss_dssp GSSSCGGGHGCS-SSTTS---HHHHHHHHSGGGBEEEESTTSSTTEEEEEEEETTEEEEEEEE-TTCG
T ss_pred CcccccccccccccccCCCCCcceeeEecccCCCceeccccccCCeEEeeeeeCCcceEEEEeccccc
Confidence 137899999999999999999999999999999999865
No 5
>KOG0540|consensus
Probab=100.00 E-value=1.5e-63 Score=473.77 Aligned_cols=287 Identities=45% Similarity=0.786 Sum_probs=262.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHhcCCCCHHHHHHhhcCCCc-ceeecccccccccCcccccCCCCCCcEEEEEEEECCEEE
Q psy11283 24 IDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGT-FVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTV 102 (314)
Q Consensus 24 l~~~~~~~~~~g~~~~~~~~~~~g~l~arerI~~L~D~gs-f~E~~~~~~~~~~~~~~~~~~~~~~gvVtG~G~I~Gr~v 102 (314)
+++.|++++.+||++++++||+|||+++||||+.|+|+|| |.|+++++.+.... +...+++++|||.|+|+||.|
T Consensus 39 i~~~R~~~l~ggg~k~vd~~~srgkl~arerIdlLld~gs~Fie~d~fa~h~m~~----~e~~ps~sIvtg~g~i~gr~~ 114 (536)
T KOG0540|consen 39 ISQLRFKALLGGGEKAVDAHHSRGKLLARERIDLLLDPGSPFIELDQFAGHEMYG----KEKVPSGSIVTGRGRINGRKC 114 (536)
T ss_pred HHHHHHHHHccCChhhhhhhhhhcccchhhhhhhccCCCCcceehhhhhhhhhcc----ccCCCCCceEeccccccceEE
Confidence 4455699999999999999999999999999999999999 99999998874322 345789999999999999999
Q ss_pred EEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHHhh---HHHHHHH-HHHhcCCCCEEEE
Q psy11283 103 FIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAA---YSSVFQR-NILASGVVPQISL 178 (314)
Q Consensus 103 ~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l~~---~~~~~~~-~~~~~~~VP~isv 178 (314)
++++||+|++||++.+.+..|..|+++.|.+.++|+|+|.||+|++++++++++.. .+++|.. +.++++.+|||++
T Consensus 115 ~vianDfTv~ggs~y~i~~kk~lr~~e~a~~~~~p~iyL~DSgga~l~~~~es~~d~~~~~~If~n~n~mss~~ipqis~ 194 (536)
T KOG0540|consen 115 FVIANDFTVKGGSYYPITVKKHLRAQEIADNNRLPCIYLVDSGGARLPRQAESFADSYHFGRIFYNQNVMSSGNIPQISV 194 (536)
T ss_pred EEEccCchhcccccchhhHHHHhhHHHHHhhcCCCceeEecCccccCcchhhhcCChhhhheeeeecceeccCCCCceeE
Confidence 99999999999999999999999999999999999999999999999999998865 8999984 5678999999999
Q ss_pred EeCCCCccccccccCCCEEEEecCceeEEEccHhhhhhhhcccCCccccCCchhhccccCceeeEecCHHHHHHHHHHHH
Q psy11283 179 ILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLL 258 (314)
Q Consensus 179 v~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~GP~vv~~~~ge~v~~~~lGGa~~h~~~~Gv~d~~~~de~~a~~~ir~~l 258 (314)
|+|+|++||+|.++++|+++|+++++++|++||++|+++|+|+++.|||||+++|+..|||.|..+.+|.+++-..|.++
T Consensus 195 Img~Ct~gg~y~pAm~d~~~~vk~~s~lfl~gp~lVka~tnEevsqedlgga~~hc~~sGv~~~~~~~dv~al~~~r~~~ 274 (536)
T KOG0540|consen 195 IMGSCTAGGAYVPAMADETIMVKDTSTLFLAGPPLVKAATNEEVSQEDLGGADLHCTTSGVADKAAKNDVHALCLLRLKV 274 (536)
T ss_pred EEecccCCceecccccceeEEecCcceEEecCCchhhhhccceeehhhcCCcceeeeeccchhhhhhccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCC--------CCCccC------------------------CCCCceeEecccCCCceeEEEEEECCeEEEEE
Q psy11283 259 GFLPMNNTQK--------PPIRRC------------------------YDSREFFEIQPKYAKNIIVGFARINGHSVGIV 306 (314)
Q Consensus 259 ~~lP~~~~~~--------~p~~~~------------------------~d~~~f~E~~~~~a~~vvtg~arl~G~~VGvv 306 (314)
++||..+.+. ||.++. -|.++|+|++++|+.+++||||||+|+|||||
T Consensus 275 ~~l~~~~~~~a~~p~~~~p~d~~~~eld~Iv~~~~~~~yd~r~vi~~iVD~~~f~E~~~~y~~tlvtGfarlnG~tVgIv 354 (536)
T KOG0540|consen 275 SNLPLSEIDLAIDPGTWDPPDYDAPELDGIVPLNLTKAYDVREVIARIVDGSRFFEFKPGYGDTLVTGFARLNGRTVGIV 354 (536)
T ss_pred ccCCcccccccCCcccCCcccccchhhccccccccccccchHhHHHhhcccchhhhhccccccceeeeeeeECCEEEEEe
Confidence 9999743321 222211 24789999999999999999999999999999
Q ss_pred eeCCccCC
Q psy11283 307 ANQPKVAA 314 (314)
Q Consensus 307 An~p~~~~ 314 (314)
+|||++++
T Consensus 355 gnn~kf~~ 362 (536)
T KOG0540|consen 355 GNNPKFAG 362 (536)
T ss_pred ccCchhcc
Confidence 99999874
No 6
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=100.00 E-value=1.9e-48 Score=363.38 Aligned_cols=216 Identities=29% Similarity=0.468 Sum_probs=194.1
Q ss_pred HhcCCCCHHHHHHhhcCCCcceee-cccccccccCccc-ccCCCCCCcEEEEEEEECCEEEEEEEEcccccCCCcCHHHH
Q psy11283 44 HNKGKLTARERVELLCDPGTFVEY-DMFMEHRCVDFNM-SEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHA 121 (314)
Q Consensus 44 ~~~g~l~arerI~~L~D~gsf~E~-~~~~~~~~~~~~~-~~~~~~~~gvVtG~G~I~Gr~v~v~a~D~t~~gGs~g~~~~ 121 (314)
.+--++|+||||+.|+|+|||.|+ +++....+..++. .....++||||+|+|+|+|++|+|+++|+||+|||+|+.++
T Consensus 10 ~s~~~ltARERi~~LlD~gSF~E~~g~~~~~~~~~~~~~~~~~~~~dGvV~G~G~I~Gr~v~v~a~D~tf~GGS~G~~~g 89 (301)
T PRK07189 10 RSFIEASARERAAALLDAGSFRELLGPFERVMSPHLPLQGIPPQFDDGVVVGKGTLDGRPVVVAAQEGRFMGGSVGEVHG 89 (301)
T ss_pred CCceeCCHHHHHHHhcCCCcceEcccccccccCcchhhhccCCCCCCcEEEEEEEECCEEEEEEEECCCccCcCcCHHHH
Confidence 445689999999999999999999 6665543323221 13345789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-----CCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCC--CCccccccccCC
Q psy11283 122 EKICKIMDQAMLTG-----APIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGP--CAGGAVYSPAIT 194 (314)
Q Consensus 122 ~K~~r~~~~A~~~~-----lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~--~~Gg~a~~~~~~ 194 (314)
+|+.|++++|.+.+ +|+|+|.||+|+||||+..+|.++++++.++...++.||+|++++|+ |+||++|++++|
T Consensus 90 ~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~VP~I~vv~G~~gc~GG~a~~a~l~ 169 (301)
T PRK07189 90 AKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVGCFGGMGIAAALC 169 (301)
T ss_pred HHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCcHHHHHHHhcC
Confidence 99999999999999 99999999999999999999999999999988888889999999999 999999999999
Q ss_pred CEEEEecCceeEEEccHhhhhhhhc-ccCCccc-------cCCchhhccccCceeeEecCHHHHHHHHHHHHhcCCCC
Q psy11283 195 DFTFMVEHSSYLFITGPDVIKSVTN-EDISQEE-------LGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLPMN 264 (314)
Q Consensus 195 D~vi~~~~~a~i~~~GP~vv~~~~g-e~v~~~~-------lGGa~~h~~~~Gv~d~~~~de~~a~~~ir~~l~~lP~~ 264 (314)
|++||+++ ++|+++||+|||.++| |++++++ |||. |...+|++|.+++||.++++. ++++||...
T Consensus 170 D~iIm~~~-a~iglaGP~VIe~~~G~e~~d~~d~~~vw~~lGG~--h~~~sG~~D~~v~dd~~a~~~--~~~~~~~~~ 242 (301)
T PRK07189 170 SYLIVSEE-GRLGLSGPEVIEQEAGVEEFDSRDRALVWRTTGGK--HRYLSGLADALVDDDVAAFRA--AALALLARG 242 (301)
T ss_pred CEEEEECC-cEEeccCHHHHHHhcCCcccCHHHhcccccccCcc--eeeecccceEEeCCHHHHHHH--HHHHHHhcc
Confidence 99999985 9999999999999999 6899988 9997 556699999999999999998 778888554
No 7
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=100.00 E-value=2.1e-47 Score=352.87 Aligned_cols=211 Identities=30% Similarity=0.440 Sum_probs=187.2
Q ss_pred CCCCHHHHHHhhcCCCcceee-cccccccccCccc-ccCCCCCCcEEEEEEEECCEEEEEEEEcccccCCCcCHHHHHHH
Q psy11283 47 GKLTARERVELLCDPGTFVEY-DMFMEHRCVDFNM-SEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKI 124 (314)
Q Consensus 47 g~l~arerI~~L~D~gsf~E~-~~~~~~~~~~~~~-~~~~~~~~gvVtG~G~I~Gr~v~v~a~D~t~~gGs~g~~~~~K~ 124 (314)
-++|+||||+.|+|+|||.|+ +++.......++. .....++||||+|+|+|+|+||+|+++|+||+|||+|+.+++|+
T Consensus 4 ~~ltAReRi~~LlD~gSF~E~~g~~~~~~~~~l~~~~~~~~~~dgvV~G~G~I~Gr~v~v~a~D~t~~GGS~G~~~g~Ki 83 (274)
T TIGR03133 4 YEANARERARGLLDAGSFRELLGPFDRVISPHLPRQGIVPQFDDGVVVGRGTIDGKPVVVAAQEGRFQGGSVGEVHGAKI 83 (274)
T ss_pred ccCCHHHHHHHhcCCCcceEcccccccccCcchhhhcccCCCCCeEEEEEEEECCEEEEEEEECCCccCcCCCHHHHHHH
Confidence 469999999999999999999 7766543222221 12346689999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-----hCCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCC--CCccccccccCCCEE
Q psy11283 125 CKIMDQAML-----TGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGP--CAGGAVYSPAITDFT 197 (314)
Q Consensus 125 ~r~~~~A~~-----~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~--~~Gg~a~~~~~~D~v 197 (314)
.|++++|.+ .++|+|+|.||+|+||||+..+|.+++++++++..+++.||+|++++|| |+||++|.++++|++
T Consensus 84 ~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~gc~GG~a~~a~l~D~v 163 (274)
T TIGR03133 84 VGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVGCFGGMGIAAGLCSYL 163 (274)
T ss_pred HHHHHHHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCcchHHHHHHhcCCEE
Confidence 999999998 6789999999999999999999999999999988888889999999999 899999999999999
Q ss_pred EEecCceeEEEccHhhhhhhhcc-cCCccc-------cCCchhhccccCceeeEecCHHHHHH-HHHHHHhc
Q psy11283 198 FMVEHSSYLFITGPDVIKSVTNE-DISQEE-------LGGAKTHTSVSGVAHNAFSNDIDAIQ-NVRHLLGF 260 (314)
Q Consensus 198 i~~~~~a~i~~~GP~vv~~~~ge-~v~~~~-------lGGa~~h~~~~Gv~d~~~~de~~a~~-~ir~~l~~ 260 (314)
||+++ ++|+++||+|||+++|+ +++.++ |||++. ..+|++|.+++||.++++ .+.++|..
T Consensus 164 im~~~-a~i~~aGP~VIe~~~G~e~~~~~d~~l~~~~lGG~~~--~~sG~~D~~v~dd~~a~~~~~~~~l~~ 232 (274)
T TIGR03133 164 IMTEE-GRLGLSGPEVIEQEAGVEEFDSRDRALVWRTTGGKHR--FLSGDADVLVEDDVDAFRAAVIAALAL 232 (274)
T ss_pred EEeCC-cEEeccCHHHHHHhcCCCccCHHHhcccccccchHhH--hhcccceEEeCCHHHHHHHHHHHHHhc
Confidence 99986 99999999999999995 677765 999954 459999999999999997 67777765
No 8
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=100.00 E-value=1.1e-46 Score=349.84 Aligned_cols=212 Identities=28% Similarity=0.384 Sum_probs=185.3
Q ss_pred cCCCCHHHHHHhhcCCCcceeecccccc-cccCcccc------------cCCCCCCcEEEEEEEECCEEEEEEEEccccc
Q psy11283 46 KGKLTARERVELLCDPGTFVEYDMFMEH-RCVDFNMS------------EKKIPGDSVVTGRGSVNGRTVFIFSQDFTVF 112 (314)
Q Consensus 46 ~g~l~arerI~~L~D~gsf~E~~~~~~~-~~~~~~~~------------~~~~~~~gvVtG~G~I~Gr~v~v~a~D~t~~ 112 (314)
.-++++||||+.|+|+|||.|++.+..+ .+.+|+.+ .+..++|+||||+|+|+|++|+++++||+|+
T Consensus 66 h~rltAreRI~~L~D~gSF~E~~~~~~~~dpl~f~~d~~~Y~~rl~~a~~~t~~~dgVVtG~G~I~Gr~v~v~a~Dftf~ 145 (296)
T CHL00174 66 HLKMSSSDRIELLIDPGTWNPMDEDMVSLDPIEFHSDEEPYKDRIDSYQKKTGLTDAVQTGIGQLNGIPVALGVMDFQFM 145 (296)
T ss_pred CcCCCHHHHHHHHccCCccEEcCCccCcCCCccccccccchHHHHHHHHhccCCCccEEEEEEEECCEEEEEEEECCccc
Confidence 4579999999999999999999988775 34555321 2346789999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHHhhHHHHHHH--HHHhcCCCCEEEEEeCCCCcccccc
Q psy11283 113 GGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQR--NILASGVVPQISLILGPCAGGAVYS 190 (314)
Q Consensus 113 gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~--~~~~~~~VP~isvv~G~~~Gg~a~~ 190 (314)
|||+|..+++|+.|++++|.+.++|+|+|.||+|+|||||+.+|++++++..+ ....+++||+|++++|||+||++|+
T Consensus 146 gGSmG~v~geKi~ra~e~A~~~rlPlV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG~aas 225 (296)
T CHL00174 146 GGSMGSVVGEKITRLIEYATNESLPLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGGVTAS 225 (296)
T ss_pred ccCcCHHHHHHHHHHHHHHHHcCCCEEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999998543 2245789999999999999999999
Q ss_pred ccC-CCEEEEecCceeEEEccHhhhhhhhcccCCccccCCchhhccccCceeeEecCHHHHHHHHHHHHhcC
Q psy11283 191 PAI-TDFTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFL 261 (314)
Q Consensus 191 ~~~-~D~vi~~~~~a~i~~~GP~vv~~~~ge~v~~~~lGGa~~h~~~~Gv~d~~~~de~~a~~~ir~~l~~l 261 (314)
+++ +|++|| ++++.|+|+||+||++++||+++ +++|++++|. ++|++|.+++- .+.-+.+.++|+++
T Consensus 226 ~a~l~Diiia-e~~A~IgfAGPrVIe~t~ge~lp-e~fq~ae~l~-~~G~vD~iV~r-~~lr~~l~~ll~~~ 293 (296)
T CHL00174 226 FGMLGDIIIA-EPNAYIAFAGKRVIEQTLNKTVP-EGSQAAEYLF-DKGLFDLIVPR-NLLKGVLSELFQLH 293 (296)
T ss_pred HHHcccEEEE-eCCeEEEeeCHHHHHHhcCCcCC-cccccHHHHH-hCcCceEEEcH-HHHHHHHHHHHHhh
Confidence 985 999998 55799999999999999999999 7799999997 59999999973 34444566666554
No 9
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=100.00 E-value=2.1e-45 Score=343.46 Aligned_cols=214 Identities=30% Similarity=0.445 Sum_probs=190.0
Q ss_pred cCCCCHHHHHHhhcCCCcceeecccccc-cccCccc-----------ccCCCCCCcEEEEEEEECCEEEEEEEEcccccC
Q psy11283 46 KGKLTARERVELLCDPGTFVEYDMFMEH-RCVDFNM-----------SEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFG 113 (314)
Q Consensus 46 ~g~l~arerI~~L~D~gsf~E~~~~~~~-~~~~~~~-----------~~~~~~~~gvVtG~G~I~Gr~v~v~a~D~t~~g 113 (314)
..++++||||+.|+|+|||.|++.+..+ .+.+|.. ..+..++++||||+|+|+|++|+|+++|++|+|
T Consensus 55 h~rl~areRi~~L~D~gsF~E~~~~~~~~d~l~f~~~~~Y~~~l~~~~~~t~~~d~vVtG~g~I~G~~V~v~a~D~~f~g 134 (292)
T PRK05654 55 HMRISARERLDLLLDEGSFVELDAELEPKDPLKFRDSKKYKDRLKAAQKKTGLKDAVVTGKGTIEGMPVVLAVMDFSFMG 134 (292)
T ss_pred CeeCCHHHHHHHHccCCccEEecCccccCCcccCCcccccchHHHHhhhccCCCCcEEEEEEEECCEEEEEEEEeccccc
Confidence 3579999999999999999999986654 3444431 123467899999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHHhhHHHHHHHHHH-hcCCCCEEEEEeCCCCcccccccc
Q psy11283 114 GSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNIL-ASGVVPQISLILGPCAGGAVYSPA 192 (314)
Q Consensus 114 Gs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~-~~~~VP~isvv~G~~~Gg~a~~~~ 192 (314)
||++..+++|+.|++++|.++++|||+|+||+|+|+|||+.+|+++++++.+... +.++||+|+|++|||+||++++++
T Consensus 135 GS~g~~~~eKi~r~~e~A~~~~lPlV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a 214 (292)
T PRK05654 135 GSMGSVVGEKIVRAVERAIEEKCPLVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFA 214 (292)
T ss_pred CCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887544 457999999999999999999988
Q ss_pred C-CCEEEEecCceeEEEccHhhhhhhhcccCCccccCCchhhccccCceeeEecCHHHHHHHHHHHHhcCCC
Q psy11283 193 I-TDFTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLPM 263 (314)
Q Consensus 193 ~-~D~vi~~~~~a~i~~~GP~vv~~~~ge~v~~~~lGGa~~h~~~~Gv~d~~~~de~~a~~~ir~~l~~lP~ 263 (314)
+ +|++||++ ++.|+++||++|+++++|+++ +++|++++|. ++|++|.+++ ..+....+.++|+++..
T Consensus 215 ~~~D~iia~p-~A~ig~aGprvie~~~~e~lp-e~~~~ae~~~-~~G~vD~Vv~-~~e~r~~l~~~L~~~~~ 282 (292)
T PRK05654 215 MLGDIIIAEP-KALIGFAGPRVIEQTVREKLP-EGFQRAEFLL-EHGAIDMIVH-RRELRDTLASLLALHTK 282 (292)
T ss_pred HcCCEEEEec-CcEEEecCHHHHHhhhhhhhh-hhhcCHHHHH-hCCCCcEEEC-HHHHHHHHHHHHHHHhc
Confidence 5 99999987 689999999999999999995 7899999997 7899999986 46777888889888743
No 10
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=100.00 E-value=6.6e-45 Score=338.76 Aligned_cols=212 Identities=27% Similarity=0.442 Sum_probs=188.3
Q ss_pred cCCCCHHHHHHhhcCCCcceeeccccccc-ccCccc-----------ccCCCCCCcEEEEEEEECCEEEEEEEEcccccC
Q psy11283 46 KGKLTARERVELLCDPGTFVEYDMFMEHR-CVDFNM-----------SEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFG 113 (314)
Q Consensus 46 ~g~l~arerI~~L~D~gsf~E~~~~~~~~-~~~~~~-----------~~~~~~~~gvVtG~G~I~Gr~v~v~a~D~t~~g 113 (314)
..++++||||+.|+|+|||.|++.+..+. +..|.. ..+..++++||||+|+|+|++|+|+++|++|+|
T Consensus 54 h~rl~areRi~~L~D~gsF~E~~~~~~~~d~l~f~~~~~Y~~~l~~~~~~t~~~d~vVtG~g~I~G~~V~v~a~D~~f~g 133 (285)
T TIGR00515 54 HMRMDARERIESLLDEGSFEEFNSHLEPKDPLKFKDSKKYKDRIAKAQKETGEKDAVVTGKGTLYGMPIVVAVFDFAFMG 133 (285)
T ss_pred cCcCCHHHHHHHceeCCeeEEeCCccccCccccCCcccchhHHHHHHhhccCCCCcEEEEEEEECCEEEEEEEEeccccC
Confidence 36799999999999999999999776542 333321 123457899999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHHhhHHHHHHHHH-HhcCCCCEEEEEeCCCCcccccccc
Q psy11283 114 GSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNI-LASGVVPQISLILGPCAGGAVYSPA 192 (314)
Q Consensus 114 Gs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~-~~~~~VP~isvv~G~~~Gg~a~~~~ 192 (314)
||+|..+++|+.|++++|.++++|||+|+||+|+|+||+..+|+++++++.+.. .++++||+|+|++|||+||++++++
T Consensus 134 GSmg~~~geKi~r~~e~A~~~~lPlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a 213 (285)
T TIGR00515 134 GSMGSVVGEKFVRAIEKALEDNCPLIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVSASFA 213 (285)
T ss_pred CCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887754 4567999999999999999999997
Q ss_pred -CCCEEEEecCceeEEEccHhhhhhhhcccCCccccCCchhhccccCceeeEecCHHHHHHHHHHHHhcC
Q psy11283 193 -ITDFTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFL 261 (314)
Q Consensus 193 -~~D~vi~~~~~a~i~~~GP~vv~~~~ge~v~~~~lGGa~~h~~~~Gv~d~~~~de~~a~~~ir~~l~~l 261 (314)
++|++||+++ +.|+++||+||+++++|+++ +++++++.|. +.|.+|.+++. .+....+.++|+++
T Consensus 214 ~~~D~iia~p~-A~ig~aGprVie~ti~e~lp-e~~q~ae~~~-~~G~vD~iv~~-~~~r~~l~~~L~~~ 279 (285)
T TIGR00515 214 MLGDLNIAEPK-ALIGFAGPRVIEQTVREKLP-EGFQTSEFLL-EHGAIDMIVHR-PEMKKTLASLLAKL 279 (285)
T ss_pred hCCCEEEEECC-eEEEcCCHHHHHHHhcCccc-hhcCCHHHHH-hCCCCcEEECc-HHHHHHHHHHHHHH
Confidence 7999999985 99999999999999999999 6699999997 56999999875 56677888888876
No 11
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=100.00 E-value=3.6e-38 Score=285.48 Aligned_cols=213 Identities=30% Similarity=0.427 Sum_probs=180.1
Q ss_pred hcCCCCHHHHHHhhcCCCcceeecccc-cccccCccc----c-------cCCCCCCcEEEEEEEECCEEEEEEEEccccc
Q psy11283 45 NKGKLTARERVELLCDPGTFVEYDMFM-EHRCVDFNM----S-------EKKIPGDSVVTGRGSVNGRTVFIFSQDFTVF 112 (314)
Q Consensus 45 ~~g~l~arerI~~L~D~gsf~E~~~~~-~~~~~~~~~----~-------~~~~~~~gvVtG~G~I~Gr~v~v~a~D~t~~ 112 (314)
-.-+++|++||+.|+|+|||.|++... ..++..|.. . .+....|+||+|.|+|+|.|+++.+.||.|+
T Consensus 55 ~h~ri~A~~Ri~~llD~gsf~el~~~l~~~dPL~F~d~k~Y~~rL~~a~~~tg~~davvtg~g~i~G~pvv~av~df~Fm 134 (294)
T COG0777 55 HHMRISARERLEALLDEGSFEELDSPLEPKDPLKFPDSKKYKDRLEAARKKTGLDDAVVTGEGTINGLPVVLAVMDFAFM 134 (294)
T ss_pred cccccCHHHHHHHhhCCCcceecccCCCcCCcccCCcchhhHHHHHHHHhhcCCCcceEEEeeEECCeEEEEEEEecccc
Confidence 346799999999999999999998633 234444431 1 1224579999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHHhhHHHHHHHHHH-hcCCCCEEEEEeCCCCccccccc
Q psy11283 113 GGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNIL-ASGVVPQISLILGPCAGGAVYSP 191 (314)
Q Consensus 113 gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~-~~~~VP~isvv~G~~~Gg~a~~~ 191 (314)
|||+|.+.++||.|+++.|.+.++|+|.|..|||+|||||+.+|+||+++..+..+ ..+++|+|+|+++|++||..+|+
T Consensus 135 gGSmGsVvGeki~ra~E~A~e~k~P~v~f~aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGGVsASf 214 (294)
T COG0777 135 GGSMGSVVGEKITRAIERAIEDKLPLVLFSASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASF 214 (294)
T ss_pred ccchhHHHHHHHHHHHHHHHHhCCCEEEEecCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccchhHhH
Confidence 99999999999999999999999999999999999999999999999999887554 56799999999999999999999
Q ss_pred c-CCCEEEEecCceeEEEccHhhhhhhhcccCCccccCCchhhccccCceeeEecCHHHHHHHHHHHHhcC
Q psy11283 192 A-ITDFTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFL 261 (314)
Q Consensus 192 ~-~~D~vi~~~~~a~i~~~GP~vv~~~~ge~v~~~~lGGa~~h~~~~Gv~d~~~~de~~a~~~ir~~l~~l 261 (314)
+ +.|++|+-| .+.|+|+||+|||++++|++++. +..++.- .+.|.+|.+++. .+.-..+-.+|+.+
T Consensus 215 A~lGDi~iAEP-~AlIGFAGpRVIEQTire~LPeg-fQ~aEfL-lehG~iD~iv~R-~elr~tla~ll~~~ 281 (294)
T COG0777 215 AMLGDIIIAEP-GALIGFAGPRVIEQTIREKLPEG-FQTAEFL-LEHGMIDMIVHR-DELRTTLASLLAKL 281 (294)
T ss_pred HhccCeeecCc-ccccccCcchhhhhhhcccCCcc-hhhHHHH-HHcCCceeeecH-HHHHHHHHHHHHHh
Confidence 8 588877754 69999999999999999999854 6677665 478999999975 44444555555554
No 12
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=100.00 E-value=1.6e-31 Score=245.68 Aligned_cols=191 Identities=23% Similarity=0.304 Sum_probs=150.3
Q ss_pred hHHHHHHhcCCCCHHHHHHhhcCCCcceeecccccccccCcccccCCCCC-CcEEEEEEEECCEEEEEEEEccc------
Q psy11283 38 KSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPG-DSVVTGRGSVNGRTVFIFSQDFT------ 110 (314)
Q Consensus 38 ~~~~~~~~~g~l~arerI~~L~D~gsf~E~~~~~~~~~~~~~~~~~~~~~-~gvVtG~G~I~Gr~v~v~a~D~t------ 110 (314)
+++...|+++|+++||||+.|+|+ |+|++.. . .+.+ .++|||+|+|+|++|+|++||..
T Consensus 6 ~~v~~ar~~~r~~are~I~~L~D~--F~El~g~-----~-------~~~~d~~vItG~gri~Gr~V~via~~~~~~~~d~ 71 (256)
T PRK12319 6 RILKEARDQGRLTTLDYATLIFDD--FMELHGD-----R-------HFRDDGAVVGGIGYLAGQPVTVVGIQKGKNLQDN 71 (256)
T ss_pred HHHHHhccCCCCCHHHHHHHhCch--heeccCC-----C-------CCCCCCcEEEEEEEECCEEEEEEEeccCCccccc
Confidence 568888999999999999999996 9998521 0 1223 47999999999999999998763
Q ss_pred --ccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHH-hhHHHHHHHHH--HhcCCCCEEEEEeCCCCc
Q psy11283 111 --VFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESL-AAYSSVFQRNI--LASGVVPQISLILGPCAG 185 (314)
Q Consensus 111 --~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l-~~~~~~~~~~~--~~~~~VP~isvv~G~~~G 185 (314)
.++|++++.+++|+.|++++|.++++|||+|+||+|+++. ..+. .++++.+..+. +++.+||+|++|+|+|+|
T Consensus 72 ~~~~~G~~~~~g~rKa~R~~~lA~~~~lPvV~lvDtpGa~~g--~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~g 149 (256)
T PRK12319 72 LKRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPG--VGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGS 149 (256)
T ss_pred eeeeCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCcCCC--HhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcCc
Confidence 5799999999999999999999999999999999999974 3333 45566665543 356789999999999999
Q ss_pred cccccccCCCEEEEecCceeEEEccHhhhhhhhcccCCc-----cccCCchhhccccCceeeEec
Q psy11283 186 GAVYSPAITDFTFMVEHSSYLFITGPDVIKSVTNEDISQ-----EELGGAKTHTSVSGVAHNAFS 245 (314)
Q Consensus 186 g~a~~~~~~D~vi~~~~~a~i~~~GP~vv~~~~ge~v~~-----~~lGGa~~h~~~~Gv~d~~~~ 245 (314)
||+|.++++|+++|+++ +.+++++|+.....+-.+-+. +.++-........|++|.+++
T Consensus 150 GgA~a~~~~D~v~m~~~-a~~~v~~pe~~a~il~~~~~~a~~aa~~~~~~a~~l~~~g~iD~ii~ 213 (256)
T PRK12319 150 GGALALAVADQVWMLEN-TMYAVLSPEGFASILWKDGSRATEAAELMKITAGELLEMGVVDKVIP 213 (256)
T ss_pred HHHHHhhcCCEEEEecC-ceEEEcCHHHHHHHHhcCcccHHHHHHHcCCCHHHHHHCCCCcEecC
Confidence 99999999999999985 889999998654443222111 111111122357899999985
No 13
>KOG0368|consensus
Probab=99.98 E-value=6e-33 Score=289.98 Aligned_cols=223 Identities=26% Similarity=0.400 Sum_probs=200.3
Q ss_pred CCCcEEEEEEEE------CCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCcccc--c------
Q psy11283 86 PGDSVVTGRGSV------NGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQ--E------ 151 (314)
Q Consensus 86 ~~~gvVtG~G~I------~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~--e------ 151 (314)
...|+|.-.-++ .||.+.|++||.||.-||+|+.+.+-+.++.++|.+.+||.|++..++|||+. |
T Consensus 1526 N~~GMVAw~~~~~TpEyP~Gr~~iVIgNDiTfqiGSFGp~ED~lF~~aselAR~~~iPrIylaaNSGARIGlAeei~~lf 1605 (2196)
T KOG0368|consen 1526 NSCGMVAWKLTVKTPEYPEGRDLIVIGNDVTFQIGSFGPREDLLFLAASELAREKGIPRIYLAANSGARIGLAEEIKPLF 1605 (2196)
T ss_pred CcceeEEEEEEecCCCCCCCceEEEEeccceEeccCCCChHHHHHHHHHHHHHhcCCCeEEEeccCccccccHHHHHHHh
Confidence 346787777665 69999999999999999999999999999999999999999999999999984 1
Q ss_pred ---------------------------------------------------------chhHHhhHHHHHHHHHHhcCCCC
Q psy11283 152 ---------------------------------------------------------GVESLAAYSSVFQRNILASGVVP 174 (314)
Q Consensus 152 ---------------------------------------------------------g~~~l~~~~~~~~~~~~~~~~VP 174 (314)
|++.|.+.|-+....+++...||
T Consensus 1606 kVaw~d~~~P~kgF~YlYlt~ed~~ri~~~~v~~e~~~~~GE~R~~I~~IiGkeeglGVEnL~GSGlIAGetSrAY~ei~ 1685 (2196)
T KOG0368|consen 1606 KVAWVDEDDPEKGFQYLYLTPEDYERIGSSVVHCEVVEESGEERLKIKAIIGKEEGIGVENLRGSGLIAGETSRAYNEIF 1685 (2196)
T ss_pred eeeccCCCCcCCCceEEEECHHHHHHhhcccceeEEEeecCcceEEEEEEecccccccceeccccccccchhhhhhhccc
Confidence 33456666666777778899999
Q ss_pred EEEEEeCCCCccccccccCCCEEEEecCceeEEEccHhhhhhhhcccC--CccccCCchhhccccCceeeEecCHHHHHH
Q psy11283 175 QISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKSVTNEDI--SQEELGGAKTHTSVSGVAHNAFSNDIDAIQ 252 (314)
Q Consensus 175 ~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~GP~vv~~~~ge~v--~~~~lGGa~~h~~~~Gv~d~~~~de~~a~~ 252 (314)
+|++|||++.|.|||...++.++|++++ +.+.+||..+++.++|.++ |+.+|||++++. .|||+|.+++||-+++.
T Consensus 1686 T~t~VT~RsVGIGAYlvRLgqR~IQve~-~~iILTGa~ALNklLGreVYTSN~QLGG~qIM~-~NGVsHlTv~dDleGV~ 1763 (2196)
T KOG0368|consen 1686 TITLVTGRSVGIGAYLARLGQRIIQVED-QHIILTGASALNKLLGREVYTSNNQLGGPQIMH-RNGVSHLTVSDDLEGVA 1763 (2196)
T ss_pred eEEEEecceeeHHHHHHHHHHHHHHhcC-CceEEeCHHHHHHHhcccccccccccCCeEEec-cCCceEEEecccHHHHH
Confidence 9999999999999999999999999985 7999999999999999997 789999999985 79999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCccCC-------------------------------------CCCceeEecccCCCceeEEE
Q psy11283 253 NVRHLLGFLPMNNTQKPPIRRCY-------------------------------------DSREFFEIQPKYAKNIIVGF 295 (314)
Q Consensus 253 ~ir~~l~~lP~~~~~~~p~~~~~-------------------------------------d~~~f~E~~~~~a~~vvtg~ 295 (314)
.|.+||||+|..+..+.|+.++. |.+||+|+..+||++||||.
T Consensus 1764 ki~~WlSY~Pa~~~~~~P~l~~~D~~dR~vef~p~~q~~yD~Rwli~G~~~~~~~~~GlFDk~SF~Eil~~WAktVV~GR 1843 (2196)
T KOG0368|consen 1764 KILNWLSYLPAKRNSPVPFLEPKDPPDRDVEFVPSTQNPYDPRWLIAGKNDSTGWLSGLFDKGSFDEILSGWAKTVVTGR 1843 (2196)
T ss_pred HHHHHHHhCCcccCCCCCccCCCCCcccceeccCCCCCCCCHHHHhcCCcCCCccccccccCccHHHHHhHHhhHheecc
Confidence 99999999999987777765432 27999999999999999999
Q ss_pred EEECCeEEEEEeeCC
Q psy11283 296 ARINGHSVGIVANQP 310 (314)
Q Consensus 296 arl~G~~VGvvAn~p 310 (314)
|||+|.||||||.+-
T Consensus 1844 ArLgGIPvGVIavEt 1858 (2196)
T KOG0368|consen 1844 ARLGGIPVGVIAVET 1858 (2196)
T ss_pred eecCCcceEEEEEEe
Confidence 999999999999863
No 14
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=99.97 E-value=4.6e-30 Score=241.17 Aligned_cols=187 Identities=21% Similarity=0.272 Sum_probs=152.1
Q ss_pred ChhHHHHHHhcCCCCHHHHHHhhcCCCcceeecccccccccCcccccCCCCCCcEEEEEEEECCEEEEEEEEccc-----
Q psy11283 36 GTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFT----- 110 (314)
Q Consensus 36 ~~~~~~~~~~~g~l~arerI~~L~D~gsf~E~~~~~~~~~~~~~~~~~~~~~~gvVtG~G~I~Gr~v~v~a~D~t----- 110 (314)
.-+++...+..++.+++++|+.|+|+ |+|++.. +.+ ..+.++|+|+|+|+|+||+|+++|++
T Consensus 60 ~w~~v~~aR~~~Rp~~~d~i~~l~d~--f~El~gd-----~~~------~dd~avV~Glgri~GrpV~VIa~dkg~~~~e 126 (322)
T CHL00198 60 PLQRLHLVRQSERPTTLDYIPYILDE--WIELHGD-----RGG------SDDPALVGGIGKINGRTIVFLGHQRGRNTKE 126 (322)
T ss_pred HHHHHHhhcCCCCCCHHHHHHHHhHH--HHHHccc-----ccc------CCCCceEEEEEEECCEEEEEEEecCCccchh
Confidence 33667777777999999999999994 9998631 111 13579999999999999999999995
Q ss_pred ---ccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHH-hhHHHHHHHHH--HhcCCCCEEEEEeCCCC
Q psy11283 111 ---VFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESL-AAYSSVFQRNI--LASGVVPQISLILGPCA 184 (314)
Q Consensus 111 ---~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l-~~~~~~~~~~~--~~~~~VP~isvv~G~~~ 184 (314)
.++|++++.+++|+.|++++|.++++|||+|+||+|+++. ..+. .++++.+..+. +++.+||+|+||+|+|.
T Consensus 127 ~~~~~~G~~~p~g~rKa~Rlm~lA~~f~lPIItlvDTpGA~~G--~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGegg 204 (322)
T CHL00198 127 NVLRNFGMPSPGGYRKALRLMKHANKFGLPILTFIDTPGAWAG--VKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEGG 204 (322)
T ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCcC--HHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCccc
Confidence 4789999999999999999999999999999999999974 4444 35566665543 57899999999999999
Q ss_pred ccccccccCCCEEEEecCceeEEEccHhhhhhhhcc------------cCCccccCCchhhccccCceeeEec
Q psy11283 185 GGAVYSPAITDFTFMVEHSSYLFITGPDVIKSVTNE------------DISQEELGGAKTHTSVSGVAHNAFS 245 (314)
Q Consensus 185 Gg~a~~~~~~D~vi~~~~~a~i~~~GP~vv~~~~ge------------~v~~~~lGGa~~h~~~~Gv~d~~~~ 245 (314)
|||||.++++|+++|+++ +.+++++|+.-.+.+-. ++++.+| ...|++|.+++
T Consensus 205 sGGAlal~~aD~V~m~e~-a~~sVisPEg~a~Il~~d~~~a~~aA~~~~ita~dL-------~~~giiD~ii~ 269 (322)
T CHL00198 205 SGGALGIGIGDSIMMLEY-AVYTVATPEACAAILWKDSKKSLDAAEALKITSEDL-------KVLGIIDEIIP 269 (322)
T ss_pred HHHHHhhhcCCeEEEeCC-eEEEecCHHHHHHHHhcchhhHHHHHHHcCCCHHHH-------HhCCCCeEecc
Confidence 999999999999999985 89999999765444332 3444444 46899998885
No 15
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=99.97 E-value=1.1e-28 Score=231.97 Aligned_cols=194 Identities=21% Similarity=0.248 Sum_probs=148.9
Q ss_pred hhHHHHHHhcCCCCHHHHHHhhcCCCcceeecccccccccCcccccCCCCCCcEEEEEEEECCEEEEEEEEccc------
Q psy11283 37 TKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFT------ 110 (314)
Q Consensus 37 ~~~~~~~~~~g~l~arerI~~L~D~gsf~E~~~~~~~~~~~~~~~~~~~~~~gvVtG~G~I~Gr~v~v~a~D~t------ 110 (314)
-+++...+...+....+.|+.|+| +|+|++. ++. ...+.++|||+|+|+|+||+|++||+.
T Consensus 58 w~~v~~ar~~~Rp~~~d~i~~l~d--~f~EL~g-------d~~----~~dd~aiVtG~ari~GrpV~VIa~d~g~~~~e~ 124 (316)
T TIGR00513 58 WQRLQLARHPDRPYTLDYIELIFD--DFFELAG-------DRA----YADDKAIVGGIARLDGRPVVVIGHQKGRDTKEK 124 (316)
T ss_pred HHHHHHHhCCCCCchHHHHHHHhh--hheeecc-------ccC----CCCCCceEEEEEEECCEEEEEEEecCCcccccc
Confidence 355666666666666688999999 4999863 110 012479999999999999999999984
Q ss_pred --ccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHHhhHHHHHHHHH--HhcCCCCEEEEEeCCCCcc
Q psy11283 111 --VFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNI--LASGVVPQISLILGPCAGG 186 (314)
Q Consensus 111 --~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~--~~~~~VP~isvv~G~~~Gg 186 (314)
.++|++++.+++|+.|++++|.++++|||+|+||+|+++..+.+. .++++.+..+. +++.+||+|+||+|+|+||
T Consensus 125 ~~~~~G~~~p~g~rKa~R~m~lA~~f~iPvVtlvDTpGa~~g~~aE~-~G~~~aia~~l~a~s~~~VP~IsVViGeggsG 203 (316)
T TIGR00513 125 LRRNFGMPAPEGYRKALRLMKMAERFKMPIITFIDTPGAYPGIGAEE-RGQSEAIARNLREMARLGVPVICTVIGEGGSG 203 (316)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCCCCHHHHH-HHHHHHHHHHHHHHHcCCCCEEEEEecccccH
Confidence 678999999999999999999999999999999999998654443 24455554433 4678999999999999999
Q ss_pred ccccccCCCEEEEecCceeEEEccHhhhhhhhcccCC-----ccccCCchhhccccCceeeEec
Q psy11283 187 AVYSPAITDFTFMVEHSSYLFITGPDVIKSVTNEDIS-----QEELGGAKTHTSVSGVAHNAFS 245 (314)
Q Consensus 187 ~a~~~~~~D~vi~~~~~a~i~~~GP~vv~~~~ge~v~-----~~~lGGa~~h~~~~Gv~d~~~~ 245 (314)
||+.++++|+++|+++ +.+++++|+.-.+.+-.+-+ .+.+.-........|++|.+++
T Consensus 204 GAla~~~aD~v~m~~~-a~~sVisPEg~a~Il~kd~~~a~~aae~~~~ta~~l~~~G~iD~II~ 266 (316)
T TIGR00513 204 GALAIGVGDKVNMLEY-STYSVISPEGCAAILWKDASKAPKAAEAMKITAPDLKELGLIDSIIP 266 (316)
T ss_pred HHhhhccCCEEEEecC-ceEEecCHHHHHHHhccchhhHHHHHHHccCCHHHHHHCCCCeEecc
Confidence 9999999999999985 88999999865544432211 1122211223357899999986
No 16
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=99.97 E-value=3.7e-29 Score=235.27 Aligned_cols=193 Identities=22% Similarity=0.264 Sum_probs=145.2
Q ss_pred hhHHHHHHhcCCCCHHHHHHhhcCCCcceeecccccccccCcccccCCCCCCcEEEEEEEECCEEEEEEEEccc------
Q psy11283 37 TKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFT------ 110 (314)
Q Consensus 37 ~~~~~~~~~~g~l~arerI~~L~D~gsf~E~~~~~~~~~~~~~~~~~~~~~~gvVtG~G~I~Gr~v~v~a~D~t------ 110 (314)
-++++..+...+...++.|+.|+| +|+|+... +.| ..+.++|||+|+|+|+||+|++||++
T Consensus 58 w~~v~~ar~~~Rp~~~d~I~~l~d--~f~El~gd-----r~~------~dd~aiV~G~ari~GrpV~VIa~d~g~~~~e~ 124 (319)
T PRK05724 58 WQKVQLARHPQRPYTLDYIELLFT--DFTELHGD-----RAF------ADDKAIVGGLARLNGRPVMVIGHQKGRDTKEK 124 (319)
T ss_pred HHhhhcccCCCCCCHHHHHHHHhh--HHHHHcCC-----cCC------CCCCceEEEEEEECCEEEEEEEecCCcccccc
Confidence 355555555566666788889998 58888631 001 12379999999999999999999994
Q ss_pred --ccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHH-hhHHHHHHHHH--HhcCCCCEEEEEeCCCCc
Q psy11283 111 --VFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESL-AAYSSVFQRNI--LASGVVPQISLILGPCAG 185 (314)
Q Consensus 111 --~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l-~~~~~~~~~~~--~~~~~VP~isvv~G~~~G 185 (314)
+++|++.+.+++|+.|++++|.++++|||+|+||+|+++. ..+. .++++.+..+. +++.+||+|+||+|+|+|
T Consensus 125 ~~~~~G~~~peg~rKa~R~m~lA~~f~lPIVtlvDTpGa~~G--~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGeg~s 202 (319)
T PRK05724 125 IRRNFGMPRPEGYRKALRLMKMAEKFGLPIITFIDTPGAYPG--IGAEERGQSEAIARNLREMARLKVPIICTVIGEGGS 202 (319)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCC--HHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCccH
Confidence 6899999999999999999999999999999999999984 3333 34455444432 478899999999999999
Q ss_pred cccccccCCCEEEEecCceeEEEccHhhhhhhhcccCC-----ccccCCchhhccccCceeeEec
Q psy11283 186 GAVYSPAITDFTFMVEHSSYLFITGPDVIKSVTNEDIS-----QEELGGAKTHTSVSGVAHNAFS 245 (314)
Q Consensus 186 g~a~~~~~~D~vi~~~~~a~i~~~GP~vv~~~~ge~v~-----~~~lGGa~~h~~~~Gv~d~~~~ 245 (314)
||++.++++|+++|+++ +.+++++|+...+.+-.+-+ .+.++-........|++|.|++
T Consensus 203 GGAla~~~aD~v~m~~~-A~~svisPEg~a~Il~~~~~~a~~aae~~~ita~~l~~~g~iD~II~ 266 (319)
T PRK05724 203 GGALAIGVGDRVLMLEY-STYSVISPEGCASILWKDASKAPEAAEAMKITAQDLKELGIIDEIIP 266 (319)
T ss_pred HHHHHHhccCeeeeecC-ceEeecCHHHHHHHHhcCchhHHHHHHHcCCCHHHHHHCCCceEecc
Confidence 99999999999999985 88999999865444332211 0112111112356889998885
No 17
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=99.97 E-value=4.6e-29 Score=251.98 Aligned_cols=192 Identities=20% Similarity=0.280 Sum_probs=146.1
Q ss_pred CCCCHHHHHHhhcCCC-------cceeecccccccccCcccccCCCCCCcEEEEEEEECCEEEEEEEEcccc--------
Q psy11283 47 GKLTARERVELLCDPG-------TFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTV-------- 111 (314)
Q Consensus 47 g~l~arerI~~L~D~g-------sf~E~~~~~~~~~~~~~~~~~~~~~~gvVtG~G~I~Gr~v~v~a~D~t~-------- 111 (314)
.+||+|+||+...|++ .|.+++.+..... ++. ...+.+||||+|+|+|+||+|+++|+++
T Consensus 144 ~~LT~werV~~aR~p~RP~~~Dyi~~i~ddf~EL~G-dr~----~~dD~aIVtGlGRIdGrpV~VIAndkg~~tke~~~r 218 (762)
T PLN03229 144 THLTPIQRVNIARHPNRPTFLDHIFNITDKFVELHG-DRA----GYDDPAIVTGIGTIDGKRYMFIGHQKGRNTKENIMR 218 (762)
T ss_pred ccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHhcC-ccc----CCCCCCeEEEEEEECCEEEEEEEecCCccccccccc
Confidence 6899999999999999 4444443332110 100 0124699999999999999999999964
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHHhhHHHHHHHHH--HhcCCCCEEEEEeCCCCccccc
Q psy11283 112 FGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNI--LASGVVPQISLILGPCAGGAVY 189 (314)
Q Consensus 112 ~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~--~~~~~VP~isvv~G~~~Gg~a~ 189 (314)
.+|++++.+++|+.|++++|.++++|||+|+||+|++++.+.+. .++++.+..+. +++.+||+|+||+|+|+|||||
T Consensus 219 nfG~~~peGyRKAlRlmkLAekfgLPIVtLVDTpGA~pG~~AEe-~Gq~~aIArnl~amasl~VP~ISVViGeggSGGAl 297 (762)
T PLN03229 219 NFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEE-LGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGAL 297 (762)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCcCCCchhHH-HhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHH
Confidence 79999999999999999999999999999999999999766654 35566665543 3678899999999999999999
Q ss_pred cccCCCEEEEecCceeEEEccHhhhhhhhcccCCc-----cccCCchhhccccCceeeEec
Q psy11283 190 SPAITDFTFMVEHSSYLFITGPDVIKSVTNEDISQ-----EELGGAKTHTSVSGVAHNAFS 245 (314)
Q Consensus 190 ~~~~~D~vi~~~~~a~i~~~GP~vv~~~~ge~v~~-----~~lGGa~~h~~~~Gv~d~~~~ 245 (314)
.++++|+++|+++ +.++++||+...+.+-.+.+. +.++=..-.-...|++|.+++
T Consensus 298 A~g~aD~VlMle~-A~~sVisPEgaAsILwkd~~~A~eAAe~lkiTa~dL~~lGiiD~IIp 357 (762)
T PLN03229 298 AIGCANKLLMLEN-AVFYVASPEACAAILWKSAKAAPKAAEKLRITAQELCRLQIADGIIP 357 (762)
T ss_pred HhhcCCEEEEecC-CeEEecCHHHHHHHHhcCcccHHHHHHHcCCCHHHHHhCCCCeeecc
Confidence 9999999999985 789999998765554332211 111111111246788888885
No 18
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=99.96 E-value=5.4e-29 Score=249.61 Aligned_cols=198 Identities=19% Similarity=0.276 Sum_probs=157.3
Q ss_pred hcCCCCHHHHHHhhcCCCcceeecccccccccCcccccCCCCCCcEEEEEEEECCEEEEEEEEcccccCCCcCHHHHHHH
Q psy11283 45 NKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKI 124 (314)
Q Consensus 45 ~~g~l~arerI~~L~D~gsf~E~~~~~~~~~~~~~~~~~~~~~~gvVtG~G~I~Gr~v~v~a~D~t~~gGs~g~~~~~K~ 124 (314)
.+..+++|+||+.|+|++||+|++. .+++++|||+|+|+|++|+|++||+++++|++++.+++|+
T Consensus 275 ~~~~~d~r~~i~~l~D~~sf~El~~---------------~~g~~vVtG~gri~G~~V~vvAnd~~~~~G~~~~~~~~K~ 339 (512)
T TIGR01117 275 PNKPYDMRDVITAIVDNGDYLEVQP---------------YYAPNIITCFARINGQSVGIIANQPKVMAGCLDIDSSDKI 339 (512)
T ss_pred CCCCCCHHHHHHHhCCCCceEEeec---------------cCCCcEEEEEEEECCEEEEEEEeccccccCCCCHHHHHHH
Confidence 3457999999999999999999974 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEecCCCcccc---cchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCcccccccc----CCCEE
Q psy11283 125 CKIMDQAMLTGAPIVGLNDSGGARIQ---EGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPA----ITDFT 197 (314)
Q Consensus 125 ~r~~~~A~~~~lPvV~l~ds~Garl~---eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~----~~D~v 197 (314)
.|++++|.++++|||+|+||+|+... |-...+.++++++.+ .+..+||+|+||+|+|+||+++.++ .+|++
T Consensus 340 ~r~i~~a~~~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a--~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~ 417 (512)
T TIGR01117 340 ARFIRFCDAFNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYA--YSEATVPKVTIITRKAYGGAYLAMCSKHLGADQV 417 (512)
T ss_pred HHHHHHHHHcCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHH--HHhCCCCEEEEEcCCCchHHHHHhccccCCCCEE
Confidence 99999999999999999999999652 322235667777766 4567999999999999999777664 39999
Q ss_pred EEecCceeEEEccHhhhhh-hhcccCCc----------------cccCCchhhccccCceeeEecCHHHHHHHHHHHHhc
Q psy11283 198 FMVEHSSYLFITGPDVIKS-VTNEDISQ----------------EELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGF 260 (314)
Q Consensus 198 i~~~~~a~i~~~GP~vv~~-~~ge~v~~----------------~~lGGa~~h~~~~Gv~d~~~~de~~a~~~ir~~l~~ 260 (314)
+||+ +++++++||+..-. ...+++.. ++...+. .+...|.+|.|++ -.+.-..+.++|..
T Consensus 418 ~a~p-~a~~~v~~pe~a~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~g~vD~VI~-P~~tR~~l~~~l~~ 494 (512)
T TIGR01117 418 YAWP-TAEIAVMGPAGAANIIFRKDIKEAKDPAATRKQKIAEYREEFANPY-KAAARGYVDDVIE-PKQTRPKIVNALAM 494 (512)
T ss_pred EEcC-CCeEeecCHHHHHHHHhhhhcccccCHHHHHHHHHHHHHHhhcCHH-HHHhcCCCCeeEC-hHHHHHHHHHHHHH
Confidence 9998 58999999986332 23333210 1123332 2346899999886 45666677777776
Q ss_pred CC
Q psy11283 261 LP 262 (314)
Q Consensus 261 lP 262 (314)
+-
T Consensus 495 ~~ 496 (512)
T TIGR01117 495 LE 496 (512)
T ss_pred Hh
Confidence 53
No 19
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=99.96 E-value=3.3e-27 Score=226.78 Aligned_cols=193 Identities=17% Similarity=0.207 Sum_probs=147.6
Q ss_pred hHHHHHHhcCCCCHHHHHHhhcCCCcceeecccccccccCcccccCCCCCCcEEEEEEEECCEEEEEEEEccccc-----
Q psy11283 38 KSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVF----- 112 (314)
Q Consensus 38 ~~~~~~~~~g~l~arerI~~L~D~gsf~E~~~~~~~~~~~~~~~~~~~~~~gvVtG~G~I~Gr~v~v~a~D~t~~----- 112 (314)
+++...+.-.+.+..+.|+.|+| +|+|++.. +. -..+.++|||+|+|+|++|+|++||+.+.
T Consensus 129 q~vq~aRhp~RP~~~d~I~~i~d--df~EL~Gd-------r~----~~dD~aIVtG~grI~GrpV~VIandkg~~~ke~~ 195 (431)
T PLN03230 129 QRLSVARHPNRPTFLDHVLNMTD--KWVELHGD-------RA----GFDDPAIVCGIGSMEGMSFMFIGHQKGRNTKENI 195 (431)
T ss_pred HHHHHHhCCCCCCHHHHHHHhhh--HHhhhcCc-------cc----CCCCCCeEEEEEEECCEEEEEEEeccCccccccc
Confidence 55566666677788888888888 48888741 10 12357999999999999999999998553
Q ss_pred ---CCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHHhhHHHHHHHHH--HhcCCCCEEEEEeCCCCccc
Q psy11283 113 ---GGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNI--LASGVVPQISLILGPCAGGA 187 (314)
Q Consensus 113 ---gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~--~~~~~VP~isvv~G~~~Gg~ 187 (314)
.|++++.+++|+.|++++|.++++|||+|+||+|+++..+.+. .++++.+..+. +++.+||+|+||+|++.+||
T Consensus 196 ~rnfG~~~peGyRKAlR~mklAekf~lPIVtLVDTpGA~pG~~AEe-~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGG 274 (431)
T PLN03230 196 YRNFAMPQPNGYRKALRFMRHAEKFGFPILTFVDTPGAYAGIKAEE-LGQGEAIAFNLREMFGLRVPIIATVIGEGGSGG 274 (431)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCCCHHHHH-HhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHH
Confidence 5899999999999999999999999999999999998655443 34455444332 46788999999999999999
Q ss_pred cccccCCCEEEEecCceeEEEccHhhhhhhhcccCC-----ccccCCchhhccccCceeeEec
Q psy11283 188 VYSPAITDFTFMVEHSSYLFITGPDVIKSVTNEDIS-----QEELGGAKTHTSVSGVAHNAFS 245 (314)
Q Consensus 188 a~~~~~~D~vi~~~~~a~i~~~GP~vv~~~~ge~v~-----~~~lGGa~~h~~~~Gv~d~~~~ 245 (314)
|+.++++|+++|+++ +.+++++|+...+.+-.+-+ .+.++-........|++|.+++
T Consensus 275 Alalg~aD~VlMle~-A~ysVisPEgaAsILwkd~~~A~eAAealkitA~dL~~~GiID~II~ 336 (431)
T PLN03230 275 ALAIGCGNRMLMMEN-AVYYVASPEACAAILWKSAAAAPKAAEALRITAAELVKLGVVDEIVP 336 (431)
T ss_pred HHHhhcCCEEEEecC-CEEEecCHHHHHHHHhccccchHHHHHHcCCCHHHHHhCCCCeEecc
Confidence 999999999999995 88999999875555432211 1223222223357899999885
No 20
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=99.95 E-value=5.8e-27 Score=231.47 Aligned_cols=200 Identities=22% Similarity=0.316 Sum_probs=165.8
Q ss_pred hcCCCCHHHHHHhhcCCCcceeecccccccccCcccccCCCCCCcEEEEEEEECCEEEEEEEEcccccCCCcCHHHHHHH
Q psy11283 45 NKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKI 124 (314)
Q Consensus 45 ~~g~l~arerI~~L~D~gsf~E~~~~~~~~~~~~~~~~~~~~~~gvVtG~G~I~Gr~v~v~a~D~t~~gGs~g~~~~~K~ 124 (314)
.+..+++||.|..|+|.+||.|+.. .++.++|||++||+|+||+|+||+++.+||.+.+.++.|.
T Consensus 284 ~~~pYDvrevI~rl~D~~~F~E~~~---------------~~a~~iV~GfaRi~G~pVGiIANqp~~~~G~l~~~sa~Ka 348 (526)
T COG4799 284 PRKPYDVREVIARLVDDGEFLEFKA---------------GYAKNIVTGFARIDGRPVGIIANQPRHLGGVLDIDSADKA 348 (526)
T ss_pred CCccccHHHHHHHhcCCccHHHHHh---------------hhCcceEEEEEEECCEEEEEEecCccccccccchHHHHHH
Confidence 4556999999999999999999974 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEecCCCccc---ccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCcccccccc----CCCEE
Q psy11283 125 CKIMDQAMLTGAPIVGLNDSGGARI---QEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPA----ITDFT 197 (314)
Q Consensus 125 ~r~~~~A~~~~lPvV~l~ds~Garl---~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~----~~D~v 197 (314)
+||+++|.+++||||+|+|++|+.. +|-.+.+...++++.+ .++.+||+|++|+++++||++|.++ -+|++
T Consensus 349 ArFI~~cd~~~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A--~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~ 426 (526)
T COG4799 349 ARFIRLCDAFNIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYA--VAEATVPKITVITRKAYGGAYYVMGGKALGPDFN 426 (526)
T ss_pred HHHHHhhhccCCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhh--HhhccCCeEEEEecccccceeeeecCccCCCcee
Confidence 9999999999999999999999988 4555567778999987 5789999999999999999999764 38999
Q ss_pred EEecCceeEEEccHhh-hhhhhcccCC---c-----------------cccCCchhhccccCceeeEecCHHHHHHHHHH
Q psy11283 198 FMVEHSSYLFITGPDV-IKSVTNEDIS---Q-----------------EELGGAKTHTSVSGVAHNAFSNDIDAIQNVRH 256 (314)
Q Consensus 198 i~~~~~a~i~~~GP~v-v~~~~ge~v~---~-----------------~~lGGa~~h~~~~Gv~d~~~~de~~a~~~ir~ 256 (314)
++|+ ++++.++||+. ++....+++. . +++..+ .+++..|.+|.+++ -.+....+.+
T Consensus 427 ~AwP-~a~iaVMG~egAv~i~~~k~l~~~~~~~~~~~~~~~~~~~eY~~~~~~p-~~aa~r~~iD~vI~-p~~tR~~L~~ 503 (526)
T COG4799 427 YAWP-TAEIAVMGPEGAVSILYRKELAAAERPEEREALLRKQLIAEYEEQFSNP-YYAAERGYIDAVID-PADTRAVLGR 503 (526)
T ss_pred EecC-cceeeecCHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHhccch-HHHHHhCCCCcccC-HHHHHHHHHH
Confidence 9998 69999999974 3322222221 0 122333 34567899998875 4677778888
Q ss_pred HHhcCCCC
Q psy11283 257 LLGFLPMN 264 (314)
Q Consensus 257 ~l~~lP~~ 264 (314)
.|+.+...
T Consensus 504 ~l~~~~~k 511 (526)
T COG4799 504 ALSALANK 511 (526)
T ss_pred HHHHHhcC
Confidence 88887665
No 21
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=99.94 E-value=9.3e-26 Score=227.77 Aligned_cols=194 Identities=20% Similarity=0.247 Sum_probs=153.6
Q ss_pred hcCCCCHHHHHHhhcCCCcceeecccccccccCcccccCCCCCCcEEEEEEEECCEEEEEEEEcccccCCCcCHHHHHHH
Q psy11283 45 NKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKI 124 (314)
Q Consensus 45 ~~g~l~arerI~~L~D~gsf~E~~~~~~~~~~~~~~~~~~~~~~gvVtG~G~I~Gr~v~v~a~D~t~~gGs~g~~~~~K~ 124 (314)
.+..+++|+.|+.|+|.+||+|+.. .+++++|||+++|+|++|+|++|| |++.+.+++|.
T Consensus 331 ~~~~yD~r~vi~~ivD~~sf~E~~~---------------~~g~~iVtG~aRi~G~~VgvvAn~-----g~l~~~~a~Ka 390 (569)
T PLN02820 331 HKQSFDVRSVIARIVDGSEFDEFKK---------------NYGTTLVTGFARIYGQPVGIIGNN-----GILFTESALKG 390 (569)
T ss_pred CCCCCCHHHHHHHhcCCceeEEecc---------------cCCCcEEEEEEEECCEEEEEEEEC-----CccCHHHHHHH
Confidence 4467999999999999999999974 578999999999999999999998 78999999999
Q ss_pred HHHHHHHHHhCCCeEEEecCCCccc---ccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCcccccccc----CCCEE
Q psy11283 125 CKIMDQAMLTGAPIVGLNDSGGARI---QEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPA----ITDFT 197 (314)
Q Consensus 125 ~r~~~~A~~~~lPvV~l~ds~Garl---~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~----~~D~v 197 (314)
.|++++|.+++||||+|+|++|+++ +|....+...++++.+ .++.+||+|+||+|+|+|+++|.++ -+|++
T Consensus 391 arfi~lc~~~~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A--~a~~~VP~isvi~g~a~G~g~~aM~g~~~~~d~~ 468 (569)
T PLN02820 391 AHFIELCAQRGIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMA--VACAKVPKITIIVGGSFGAGNYGMCGRAYSPNFL 468 (569)
T ss_pred HHHHHHHHhcCCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHH--HHhCCCCEEEEEECCcchHHHHHhcCcCCCCCEE
Confidence 9999999999999999999999998 4544445566677665 4779999999999999999998775 48999
Q ss_pred EEecCceeEEEccHhhhhh-hhcccC----------Ccc--------------ccCCchhhccccCceeeEecCHHHHHH
Q psy11283 198 FMVEHSSYLFITGPDVIKS-VTNEDI----------SQE--------------ELGGAKTHTSVSGVAHNAFSNDIDAIQ 252 (314)
Q Consensus 198 i~~~~~a~i~~~GP~vv~~-~~ge~v----------~~~--------------~lGGa~~h~~~~Gv~d~~~~de~~a~~ 252 (314)
+||+ +++++++||+..-. ....++ ..+ +...+ ..+...|.+|.|++ -.+.-.
T Consensus 469 ~awp-~A~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~aa~~~~vD~VId-P~dTR~ 545 (569)
T PLN02820 469 FMWP-NARIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAYEREANP-YYSTARLWDDGVID-PADTRR 545 (569)
T ss_pred EECC-CCeEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHHHHhCCH-HHHHHcCCcCcccC-HHHHHH
Confidence 9997 68999999974322 222222 011 11222 23456888898875 456667
Q ss_pred HHHHHHhcCCC
Q psy11283 253 NVRHLLGFLPM 263 (314)
Q Consensus 253 ~ir~~l~~lP~ 263 (314)
.+.++|..+..
T Consensus 546 ~l~~~l~~~~~ 556 (569)
T PLN02820 546 VLGLCLSAALN 556 (569)
T ss_pred HHHHHHHHhhc
Confidence 77777776544
No 22
>KOG0540|consensus
Probab=99.94 E-value=3.4e-26 Score=218.74 Aligned_cols=207 Identities=22% Similarity=0.258 Sum_probs=158.0
Q ss_pred HHHHHhcCCCCHHHHHHhhcCCCcceeecccccccccCcccccCCCCCCcEEEEEEEECCEEEEEEEEcccccCCCcCHH
Q psy11283 40 IQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSV 119 (314)
Q Consensus 40 ~~~~~~~g~l~arerI~~L~D~gsf~E~~~~~~~~~~~~~~~~~~~~~~gvVtG~G~I~Gr~v~v~a~D~t~~gGs~g~~ 119 (314)
|.-+.....++.||.|..++|.+.|+|+.+ .+++.+|||+++++|++|++++||+.|+||+++..
T Consensus 304 Iv~~~~~~~yd~r~vi~~iVD~~~f~E~~~---------------~y~~tlvtGfarlnG~tVgIvgnn~kf~~G~L~s~ 368 (536)
T KOG0540|consen 304 IVPLNLTKAYDVREVIARIVDGSRFFEFKP---------------GYGDTLVTGFARLNGRTVGIVGNNPKFAGGVLFSE 368 (536)
T ss_pred ccccccccccchHhHHHhhcccchhhhhcc---------------ccccceeeeeeeECCEEEEEeccCchhcccccchh
Confidence 444556677999999999999999999974 68999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHHhhHHHHHHHH--HHhcCCCCEEEEEeCCCCccccc--ccc-CC
Q psy11283 120 HAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRN--ILASGVVPQISLILGPCAGGAVY--SPA-IT 194 (314)
Q Consensus 120 ~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~--~~~~~~VP~isvv~G~~~Gg~a~--~~~-~~ 194 (314)
.+.|..|++++|.+++||+|+|+|++| +|+++...+.++++.-..+ +.++++||+|++++|+++||... +.+ ..
T Consensus 369 sa~KgarfIe~c~q~~IPLi~l~ni~G-fm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit~~syGG~y~m~sr~~~g 447 (536)
T KOG0540|consen 369 SAVKGARFIELCDQRNIPLIFLQNITG-FMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIITGGSYGGNYAMCSRGYSG 447 (536)
T ss_pred hhhhhHHHHHHHHhcCCcEEEEEccCC-ccccchhhhhchhhhhhhhhhhhhhccCceEEEEecCccCCcccccccccCC
Confidence 999999999999999999999999999 6666655555655543332 25789999999999999995544 233 48
Q ss_pred CEEEEecCceeEEEccH-h---hhhhhhcccCC------ccccCCchhhccccCceeeEecCH--HHHHHHHHHHHhcCC
Q psy11283 195 DFTFMVEHSSYLFITGP-D---VIKSVTNEDIS------QEELGGAKTHTSVSGVAHNAFSND--IDAIQNVRHLLGFLP 262 (314)
Q Consensus 195 D~vi~~~~~a~i~~~GP-~---vv~~~~ge~v~------~~~lGGa~~h~~~~Gv~d~~~~de--~~a~~~ir~~l~~lP 262 (314)
|+++||| +++|.++|. + ++.+.+-|+.- .|.+|-+ ..+...|+.|.+++-- ...+-...+.+...|
T Consensus 448 d~~yawP-~A~IavmG~~~a~~Vi~q~~~e~a~~~~~~~~E~f~np-y~a~~Rg~~D~II~p~~tR~vl~~~l~~~~~~p 525 (536)
T KOG0540|consen 448 DINYAWP-NARIAVMGGKQAANVIFQITLEKAVALKAPYIEKFGNP-YYAAARGWDDGIIDPSDTRKVLGLDLQAAANKP 525 (536)
T ss_pred ceeEEcc-cceeeeccccchhhhhhhhhhhhhhhhcchHHHHhcCc-cHHHHhhccccccChhHhhHHHHHHHHHHhcCC
Confidence 9999998 699999997 4 56655433321 1334333 3445678888887532 233444445555545
Q ss_pred CC
Q psy11283 263 MN 264 (314)
Q Consensus 263 ~~ 264 (314)
.+
T Consensus 526 l~ 527 (536)
T KOG0540|consen 526 LQ 527 (536)
T ss_pred Cc
Confidence 44
No 23
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=99.92 E-value=6.2e-25 Score=220.10 Aligned_cols=197 Identities=23% Similarity=0.329 Sum_probs=144.1
Q ss_pred cCCCCHHHHHHhhcCCCcceeecccccccccCcccccCCCCCCcEEEEEEEECCEEEEEEEEcccccCCCcCHHHHHHHH
Q psy11283 46 KGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKIC 125 (314)
Q Consensus 46 ~g~l~arerI~~L~D~gsf~E~~~~~~~~~~~~~~~~~~~~~~gvVtG~G~I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~ 125 (314)
+..+++|+.|+.++|.+||+|++. .++.++|||++||+|+||+|++|++.+.+|++.+.+++|..
T Consensus 255 ~~~yD~r~ii~~i~D~~~f~E~~~---------------~~g~~~vtg~arl~G~pVGiian~~~~~~G~~~~~~a~K~a 319 (493)
T PF01039_consen 255 RRPYDMRDIIARIVDDGSFFELKP---------------GYGKNIVTGFARLGGRPVGIIANNPRQRAGALDPDGARKAA 319 (493)
T ss_dssp TS---HHHHHHHHSGGGBEEEEST---------------TSSTTEEEEEEEETTEEEEEEEE-TTCGGGEB-HHHHHHHH
T ss_pred CCCCCcceeeEecccCCCceeccc---------------cccCCeEEeeeeeCCcceEEEEeccccccccCChHHHHHHH
Confidence 467899999999999999999973 57899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEecCCCcccc---cchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCccccccccC----CCEEE
Q psy11283 126 KIMDQAMLTGAPIVGLNDSGGARIQ---EGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAI----TDFTF 198 (314)
Q Consensus 126 r~~~~A~~~~lPvV~l~ds~Garl~---eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~~----~D~vi 198 (314)
|++++|.+++||||+|+|++|+... |....+...++++.+ .+..+||+|+||+|+++||+++.++. .|+++
T Consensus 320 rfi~lcd~~~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a--~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~ 397 (493)
T PF01039_consen 320 RFIRLCDAFNIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYA--LAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVF 397 (493)
T ss_dssp HHHHHHHHTT--EEEEEEECEB--SHHHHHTTHHHHHHHHHHH--HHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEE
T ss_pred HHHHHHHhhCCceEEEeecccccccchhhhcchHHHHHHHHHH--HHcCCCCEEEEEeCCccCcchhhhcccccchhhhh
Confidence 9999999999999999999999984 333345667888877 45678999999999999999987764 58999
Q ss_pred EecCceeEEEccHhhhhhh-hcccCCc--------------------cccCCchhhccccCceeeEecCHHHHHHHHHHH
Q psy11283 199 MVEHSSYLFITGPDVIKSV-TNEDISQ--------------------EELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHL 257 (314)
Q Consensus 199 ~~~~~a~i~~~GP~vv~~~-~ge~v~~--------------------~~lGGa~~h~~~~Gv~d~~~~de~~a~~~ir~~ 257 (314)
+|| ++++.+++|+..-.+ ...+... +++..+ ..+...+.+|.+++- .+.-..+.+.
T Consensus 398 Awp-~a~~~vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~D~ii~p-~~tR~~l~~~ 474 (493)
T PF01039_consen 398 AWP-TAEIGVMGPEGAASILYRDELEAAEAEGADPEAQRAEKIAEYEDELSSP-YRAASRGYVDDIIDP-AETRKVLIAA 474 (493)
T ss_dssp EET-T-EEESS-HHHHHHHHTHHHHHHSCHCCHSHHHHHHHHHHHHHHHHSSH-HHHHHTTSSSEESSG-GGHHHHHHHH
T ss_pred hhh-cceeeecChhhhheeeehhhhhhhhcccchhHHHHHHHHHHHHHhcCCH-HHHHhcCCCCCccCH-HHHHHHHHHH
Confidence 998 699999999764333 2222111 112333 344567888887653 4555555566
Q ss_pred HhcCC
Q psy11283 258 LGFLP 262 (314)
Q Consensus 258 l~~lP 262 (314)
|..+-
T Consensus 475 l~~~~ 479 (493)
T PF01039_consen 475 LEMLW 479 (493)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 65543
No 24
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=99.89 E-value=4.5e-22 Score=181.41 Aligned_cols=187 Identities=20% Similarity=0.206 Sum_probs=142.5
Q ss_pred HHHHHHhhcCCCcceeecccccccccCcccccCCCCCCcEEEEEEEECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHH
Q psy11283 51 ARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQ 130 (314)
Q Consensus 51 arerI~~L~D~gsf~E~~~~~~~~~~~~~~~~~~~~~~gvVtG~G~I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~ 130 (314)
.++.|+.|+|+++|+|++ +++|||+++++|++|+|+++++.. .+|..++.|..+++..
T Consensus 2 ~~~~l~~l~d~~~~~e~~-------------------~~vv~G~arl~G~~V~vIa~~~~~---~~g~~~~~k~A~~v~~ 59 (238)
T TIGR03134 2 GRDWLAALFPNGHEVAGD-------------------PGVLVGSAELAGGKVTVIGVVPDA---EVGLDEALALAQAVLD 59 (238)
T ss_pred HHHHHHHHcCCCcEEecC-------------------CcEEEEEEEECCEEEEEEEECCCC---cCChHHHHHHHHHHHH
Confidence 478999999999999875 289999999999999999999865 8999999999999999
Q ss_pred H-H-HhCCCeEEEecCCCcccccchh---HHhhHHHHHHHHHHh-cCCCCEEEEEeCCCCccccccccC-CCEEEEecCc
Q psy11283 131 A-M-LTGAPIVGLNDSGGARIQEGVE---SLAAYSSVFQRNILA-SGVVPQISLILGPCAGGAVYSPAI-TDFTFMVEHS 203 (314)
Q Consensus 131 A-~-~~~lPvV~l~ds~Garl~eg~~---~l~~~~~~~~~~~~~-~~~VP~isvv~G~~~Gg~a~~~~~-~D~vi~~~~~ 203 (314)
| + ++++|||+|+|++|+++....+ ....+++++.....+ ..++|+|+||+|+++||+++.+++ +|+++||+ +
T Consensus 60 ~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp-~ 138 (238)
T TIGR03134 60 VIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALP-G 138 (238)
T ss_pred HHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcC-C
Confidence 6 4 4999999999999999843322 224456666554443 466999999999999999998886 99999997 6
Q ss_pred eeEEEccHhhhhhhhcccCCc-ccc--------CCchhhccccCceeeEecCHHH-HH-HHHHHHHhcC
Q psy11283 204 SYLFITGPDVIKSVTNEDISQ-EEL--------GGAKTHTSVSGVAHNAFSNDID-AI-QNVRHLLGFL 261 (314)
Q Consensus 204 a~i~~~GP~vv~~~~ge~v~~-~~l--------GGa~~h~~~~Gv~d~~~~de~~-a~-~~ir~~l~~l 261 (314)
+.+.+++|+.....+-.+.+. +++ -++. ...+.|.+|.+.+.... .+ +.+.+.++.+
T Consensus 139 A~i~vm~~e~aa~I~~~~~~~~~e~a~~~~~~a~~~~-~~~~~G~vd~vi~~~~~~~~~~~~~~~~~~~ 206 (238)
T TIGR03134 139 AMVHVMDLESMARVTKRSVEELEALAKSSPVFAPGIE-NFVKLGGVHALLDVADADAPAAQLAAVLAAL 206 (238)
T ss_pred cEEEecCHHHHHHHHccCHhHHHHHHHhhhhhccCHH-HHHhCCCccEEeCCCCcccHHHHHHHHHHhh
Confidence 899999999876666544431 111 1111 12568999999874331 11 5565666544
No 25
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=99.86 E-value=1.6e-20 Score=172.13 Aligned_cols=161 Identities=24% Similarity=0.320 Sum_probs=125.0
Q ss_pred hHHHHHHhcCCCCHHHHHHhhcCCCcceeecccccccccCcccccCCCCCCcEEEEEEEECCEEEEEEEEcccc------
Q psy11283 38 KSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTV------ 111 (314)
Q Consensus 38 ~~~~~~~~~g~l~arerI~~L~D~gsf~E~~~~~~~~~~~~~~~~~~~~~~gvVtG~G~I~Gr~v~v~a~D~t~------ 111 (314)
++++..+--.+.+..+.|+.|||+ |+|+.. .+.| ..+.++|.|+++++|+||+|+.++...
T Consensus 58 q~~q~ARhp~RP~tldyi~~i~~d--f~eL~G-----DR~f------~dD~Aivgglar~~G~pv~vIG~qKG~dtk~~~ 124 (317)
T COG0825 58 QRVQLARHPDRPYTLDYIELLFTD--FVELHG-----DRAF------ADDPAIVGGLARFGGQPVVVIGHQKGRDTKEKL 124 (317)
T ss_pred HHHHHhhCCCCCcHHHHHHHHHhH--HHHhcC-----cccc------CcChhheeeeeeECCeeEEEEeeecCccchhHH
Confidence 444444445667777777777774 777753 1111 235689999999999999999998865
Q ss_pred --cCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHHhhHHHHHHHHH--HhcCCCCEEEEEeCCCCccc
Q psy11283 112 --FGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNI--LASGVVPQISLILGPCAGGA 187 (314)
Q Consensus 112 --~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~--~~~~~VP~isvv~G~~~Gg~ 187 (314)
.=|...|.+.+|..|++++|.++++|||+|+||+|+...-+.+. .+.++.++.+. ++...||+|++|.|...+||
T Consensus 125 ~rNFGm~~PeGyRKAlRlm~~AekF~lPiitfIDT~GAypG~~AEE-rGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGG 203 (317)
T COG0825 125 KRNFGMPRPEGYRKALRLMKLAEKFGLPIITFIDTPGAYPGIGAEE-RGQSEAIARNLREMARLKVPIISIVIGEGGSGG 203 (317)
T ss_pred HhcCCCCCchHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCcchhh-cccHHHHHHHHHHHhCCCCCEEEEEecCCCchh
Confidence 45777799999999999999999999999999999997544432 34455554433 46789999999999999999
Q ss_pred cccccCCCEEEEecCceeEEEccHhh
Q psy11283 188 VYSPAITDFTFMVEHSSYLFITGPDV 213 (314)
Q Consensus 188 a~~~~~~D~vi~~~~~a~i~~~GP~v 213 (314)
|+..+.+|.|+|.++ +...+..|+-
T Consensus 204 ALAi~vad~V~mle~-s~ySVisPEG 228 (317)
T COG0825 204 ALAIGVADRVLMLEN-STYSVISPEG 228 (317)
T ss_pred hHHhhHHHHHHHHHh-ceeeecChhh
Confidence 999999999999985 5666767754
No 26
>PF03255 ACCA: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (6.4.1.2 from EC). It catalyses the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association []. The reaction involves two steps: Biotin carrier protein + ATP + HCO3 - -> Carboxybiotin carrier protein + ADP + Pi Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex; PDB: 2F9I_A 2F9Y_A.
Probab=98.83 E-value=9.7e-09 Score=86.13 Aligned_cols=85 Identities=22% Similarity=0.187 Sum_probs=58.8
Q ss_pred CChhHHHHHHhcCCCCHHHHHHhhcCCCcceeecccccccccCcccccCCCCCCcEEEEEEEECCEEEEEEEEcc-----
Q psy11283 35 GGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDF----- 109 (314)
Q Consensus 35 g~~~~~~~~~~~g~l~arerI~~L~D~gsf~E~~~~~~~~~~~~~~~~~~~~~~gvVtG~G~I~Gr~v~v~a~D~----- 109 (314)
..-++|...+...+.++.+.|+.||| .|+|++.. +.+ ..+.++|+|+|+++|+||.|++++.
T Consensus 53 t~w~~V~~aRhp~Rp~~~dyI~~l~~--df~ElhGD-----R~~------~dD~AivgG~a~~~g~~V~vig~~KG~~~~ 119 (145)
T PF03255_consen 53 TPWQRVQLARHPDRPTALDYIENLFD--DFIELHGD-----RLF------GDDPAIVGGIARFDGQPVTVIGQQKGRDTK 119 (145)
T ss_dssp -HHHHHHHHTBTTS--HHHHHHHH-E--EEEE---------SSS---------TTEEEEEEEETTEEEEEEEE---SSCC
T ss_pred CHHHHHHHhhCCCCCCHHHHHHHHhC--cCeEecCC-----ccC------CcCccceeeeEEECCEEEEEEEEecCcCHH
Confidence 34466777777789999999999999 59999741 111 2356999999999999999999988
Q ss_pred ---cccCCCcCHHHHHHHHHHHHHHH
Q psy11283 110 ---TVFGGSLSSVHAEKICKIMDQAM 132 (314)
Q Consensus 110 ---t~~gGs~g~~~~~K~~r~~~~A~ 132 (314)
....|+..|.+.+|..|++++|.
T Consensus 120 e~~~rNFGm~~PeGYRKAlRlmk~Ae 145 (145)
T PF03255_consen 120 ENIKRNFGMPHPEGYRKALRLMKQAE 145 (145)
T ss_dssp HHHHTGGG---HHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCcchHHHHHHHHHhcC
Confidence 34689999999999999999985
No 27
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=98.37 E-value=4.6e-06 Score=75.76 Aligned_cols=131 Identities=18% Similarity=0.240 Sum_probs=102.8
Q ss_pred CCCcEEEEEEEE-CCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHH--HhCCCeEEEecCCCcccc--cchhHH----
Q psy11283 86 PGDSVVTGRGSV-NGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAM--LTGAPIVGLNDSGGARIQ--EGVESL---- 156 (314)
Q Consensus 86 ~~~gvVtG~G~I-~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~--~~~lPvV~l~ds~Garl~--eg~~~l---- 156 (314)
....++.|.+.. +++++.|+.... .|.+|-.++.++.+.+.-.. ..+.|||.++|++|-++. |...++
T Consensus 15 ~~~~v~~g~~~~~~~~~iaVvg~~~---~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~grreEllGi~~al 91 (234)
T PF06833_consen 15 ASVQVLDGEAGGEDGRFIAVVGDAN---HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYGRREELLGINQAL 91 (234)
T ss_pred cccceEEeeccccCCcEEEEEecCC---CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccchHHHHhhHHHHH
Confidence 356788999888 899999998775 79999999999998887665 457999999999998873 333322
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEEeCCCCcccccccc-CCCEEEEecCceeEEEccHhhhhhhhcccC
Q psy11283 157 AAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPA-ITDFTFMVEHSSYLFITGPDVIKSVTNEDI 222 (314)
Q Consensus 157 ~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~-~~D~vi~~~~~a~i~~~GP~vv~~~~ge~v 222 (314)
.+.++.+.. ....+-|+|++|.|++.+|+..+.+ ++|.+++.+ .+.+-+|+.+.+..+|...+
T Consensus 92 Ahla~a~a~--AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~-ga~i~vM~~~s~ARVTk~~v 155 (234)
T PF06833_consen 92 AHLAKAYAL--ARLAGHPVIGLVYGKAMSGAFLAHGLQANRLIALP-GAMIHVMGKPSAARVTKRPV 155 (234)
T ss_pred HHHHHHHHH--HHHcCCCeEEEEecccccHHHHHHHHHhcchhcCC-CCeeecCChHHhHHHhhcCH
Confidence 222333322 2347799999999999999998887 599999998 58999999988887776543
No 28
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=98.11 E-value=5.4e-06 Score=73.21 Aligned_cols=89 Identities=18% Similarity=0.268 Sum_probs=67.8
Q ss_pred CCcCHHHHHHHHHHHHHHHHhCC-CeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEe---CCCCccccc
Q psy11283 114 GSLSSVHAEKICKIMDQAMLTGA-PIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLIL---GPCAGGAVY 189 (314)
Q Consensus 114 Gs~g~~~~~K~~r~~~~A~~~~l-PvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~---G~~~Gg~a~ 189 (314)
|.++......+.+.++.|...+. +|+..+||+|..+..+. +++.. +....+|+|+.+. |.|.|||++
T Consensus 8 g~I~~~~~~~l~~~l~~a~~~~~~~vvl~InSpGG~v~~~~-------~i~~~--l~~~~kPvia~v~~~~G~AasgG~~ 78 (187)
T cd07020 8 GAITPATADYLERAIDQAEEGGADALIIELDTPGGLLDSTR-------EIVQA--ILASPVPVVVYVYPSGARAASAGTY 78 (187)
T ss_pred eEEChHHHHHHHHHHHHHHhCCCCEEEEEEECCCCCHHHHH-------HHHHH--HHhCCCCEEEEEecCCCCchhHHHH
Confidence 56667778899999999988764 47777799997654332 22222 2345799999999 999999999
Q ss_pred cccCCCEEEEecCceeEEEccHh
Q psy11283 190 SPAITDFTFMVEHSSYLFITGPD 212 (314)
Q Consensus 190 ~~~~~D~vi~~~~~a~i~~~GP~ 212 (314)
....||+++|.+ ++.++..+|.
T Consensus 79 iala~D~iva~p-~a~~g~~~~~ 100 (187)
T cd07020 79 ILLAAHIAAMAP-GTNIGAAHPV 100 (187)
T ss_pred HHHhCCceeECC-CCcEEecccc
Confidence 988999999987 5788875553
No 29
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=97.93 E-value=0.00017 Score=63.24 Aligned_cols=140 Identities=20% Similarity=0.233 Sum_probs=86.8
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEecCC-----Ccccccc---hh---HHhhHHHHHHHH--HHhcCCCCEEE
Q psy11283 112 FGGSLSSVHAEKICKIMDQAMLT-GAPIVGLNDSG-----GARIQEG---VE---SLAAYSSVFQRN--ILASGVVPQIS 177 (314)
Q Consensus 112 ~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~ds~-----Garl~eg---~~---~l~~~~~~~~~~--~~~~~~VP~is 177 (314)
.-.+++....+.+.++++.+... .+-+|.|.-++ |..+.+- .. ....+.+.+... ....-.+|+|+
T Consensus 19 ~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia 98 (195)
T cd06558 19 KRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIA 98 (195)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 45689999999999999999874 45566665433 3333210 00 011222222221 13456899999
Q ss_pred EEeCCCCccccccccCCCEEEEecCceeEEEcc--------------------Hhhh-hhh-hcccCCccccCCchhhcc
Q psy11283 178 LILGPCAGGAVYSPAITDFTFMVEHSSYLFITG--------------------PDVI-KSV-TNEDISQEELGGAKTHTS 235 (314)
Q Consensus 178 vv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~G--------------------P~vv-~~~-~ge~v~~~~lGGa~~h~~ 235 (314)
++.|.|.|+|+.....||++||.++ +.+.+.. +... +.+ +|+.++.++ +.
T Consensus 99 ~v~G~a~g~G~~la~~~D~~i~~~~-~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a~e-------a~ 170 (195)
T cd06558 99 AVNGAALGGGLELALACDIRIAAED-AKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEE-------AL 170 (195)
T ss_pred EECCeeecHHHHHHHhCCEEEecCC-CEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHcCCccCHHH-------HH
Confidence 9999999999888888999999985 6665422 1111 111 233444332 25
Q ss_pred ccCceeeEecCHHHHHHHHHHHHhc
Q psy11283 236 VSGVAHNAFSNDIDAIQNVRHLLGF 260 (314)
Q Consensus 236 ~~Gv~d~~~~de~~a~~~ir~~l~~ 260 (314)
..|++|.++++ ++..+.+.++...
T Consensus 171 ~~Glv~~~~~~-~~l~~~a~~~a~~ 194 (195)
T cd06558 171 ELGLVDEVVPD-EELLAAALELARR 194 (195)
T ss_pred HcCCCCeecCh-hHHHHHHHHHHhh
Confidence 68999999987 5566777776643
No 30
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=97.93 E-value=0.00015 Score=66.49 Aligned_cols=138 Identities=19% Similarity=0.272 Sum_probs=87.1
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHhCCCeEEEec-----CCCcccccchh--HH-hhHHHHHHHHHHhcCCCCEEEEEeCCC
Q psy11283 112 FGGSLSSVHAEKICKIMDQAMLTGAPIVGLND-----SGGARIQEGVE--SL-AAYSSVFQRNILASGVVPQISLILGPC 183 (314)
Q Consensus 112 ~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~d-----s~Garl~eg~~--~l-~~~~~~~~~~~~~~~~VP~isvv~G~~ 183 (314)
..-+++..-...+.++++.+.+..+-+|.|.- |.|..+.+... .+ ..+.+++.. ......|+|+.|-|.|
T Consensus 20 ~~Nal~~~~~~~l~~al~~~~~~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~--l~~~~kP~Iaav~G~a 97 (243)
T PRK07854 20 RRNALNAELCEELREAVRKAVDESARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHA--IDAAPVPVIAAINGPA 97 (243)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHH--HHhCCCCEEEEecCcc
Confidence 33588899999999999888766666666653 34455543111 11 111222222 3456799999999999
Q ss_pred CccccccccCCCEEEEecCceeEEEcc------H-----hhhhhh-----------hcccCCccccCCchhhccccCcee
Q psy11283 184 AGGAVYSPAITDFTFMVEHSSYLFITG------P-----DVIKSV-----------TNEDISQEELGGAKTHTSVSGVAH 241 (314)
Q Consensus 184 ~Gg~a~~~~~~D~vi~~~~~a~i~~~G------P-----~vv~~~-----------~ge~v~~~~lGGa~~h~~~~Gv~d 241 (314)
+|||......||++|+.++ +++.+.- | ..+... +|+.++.++ . ...|+++
T Consensus 98 ~GgG~~lal~cD~~ia~~~-a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~e-----A--~~~Glv~ 169 (243)
T PRK07854 98 IGAGLQLAMACDLRVVAPE-AYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQ-----A--LATGMAN 169 (243)
T ss_pred cccHHHHHHhCCEEEEcCC-CEEeccccccccCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHH-----H--HHCCCcc
Confidence 9999988888999999874 6665500 1 111111 444444443 2 4689999
Q ss_pred eEecCHHHHHHHHHHHHhc
Q psy11283 242 NAFSNDIDAIQNVRHLLGF 260 (314)
Q Consensus 242 ~~~~de~~a~~~ir~~l~~ 260 (314)
.+++. .++.+.++++...
T Consensus 170 ~v~~~-~~a~~~a~~l~~~ 187 (243)
T PRK07854 170 RIGTL-ADAQAWAAEIAGL 187 (243)
T ss_pred cccCH-HHHHHHHHHHHhC
Confidence 98653 3667777776654
No 31
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.92 E-value=1e-05 Score=76.90 Aligned_cols=35 Identities=34% Similarity=0.594 Sum_probs=32.4
Q ss_pred CCceeEecccCC----CceeEEEEEECCeEEEEEeeCCc
Q psy11283 277 SREFFEIQPKYA----KNIIVGFARINGHSVGIVANQPK 311 (314)
Q Consensus 277 ~~~f~E~~~~~a----~~vvtg~arl~G~~VGvvAn~p~ 311 (314)
.++|+|++++|+ +++|||||||+|+||+|||||+.
T Consensus 80 ~d~f~EL~gd~~~~dd~aiVtG~ari~GrpV~VIa~d~g 118 (316)
T TIGR00513 80 FDDFFELAGDRAYADDKAIVGGIARLDGRPVVVIGHQKG 118 (316)
T ss_pred hhhheeeccccCCCCCCceEEEEEEECCEEEEEEEecCC
Confidence 447999999998 99999999999999999999984
No 32
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=97.89 E-value=7.6e-06 Score=77.87 Aligned_cols=35 Identities=34% Similarity=0.609 Sum_probs=32.5
Q ss_pred CCceeEeccc--CC--CceeEEEEEECCeEEEEEeeCCc
Q psy11283 277 SREFFEIQPK--YA--KNIIVGFARINGHSVGIVANQPK 311 (314)
Q Consensus 277 ~~~f~E~~~~--~a--~~vvtg~arl~G~~VGvvAn~p~ 311 (314)
.++|+|++++ |+ +++|||||||+|+||+||||||.
T Consensus 80 ~d~f~El~gdr~~~dd~aiV~G~ari~GrpV~VIa~d~g 118 (319)
T PRK05724 80 FTDFTELHGDRAFADDKAIVGGLARLNGRPVMVIGHQKG 118 (319)
T ss_pred hhHHHHHcCCcCCCCCCceEEEEEEECCEEEEEEEecCC
Confidence 4689999999 77 99999999999999999999984
No 33
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=97.86 E-value=0.0003 Score=65.06 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=86.2
Q ss_pred EEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEec-----CCCcccccchh-------H---HhhHHHHHHHHHH
Q psy11283 104 IFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLND-----SGGARIQEGVE-------S---LAAYSSVFQRNIL 168 (314)
Q Consensus 104 v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~d-----s~Garl~eg~~-------~---l~~~~~~~~~~~~ 168 (314)
|.-|.+. ..-+++..-.+.+..+++.+.. .+-+|.+.- |+|..+.+-.. . ...+.+++.. .
T Consensus 17 itlnrp~-~~Nal~~~~~~~L~~~l~~~~~-~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--l 92 (255)
T PRK07112 17 LQLHRPE-AQNTINDRLIAECMDVLDRCEH-AATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHR--L 92 (255)
T ss_pred EEEcCCC-ccCCCCHHHHHHHHHHHHHhhc-CceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHH--H
Confidence 3344443 3358889999999999988873 566666643 34444432100 0 0001112222 3
Q ss_pred hcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEcc------Hhh----hhhh-----------hcccCCcccc
Q psy11283 169 ASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITG------PDV----IKSV-----------TNEDISQEEL 227 (314)
Q Consensus 169 ~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~G------P~v----v~~~-----------~ge~v~~~~l 227 (314)
....+|+|+.|-|.|+|||......||++|+.+ .+++++.- |.. +... +|+.++.++
T Consensus 93 ~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~-~a~f~~pe~~~Gl~p~~~~~~l~~~vg~~~a~~l~l~g~~~~a~e- 170 (255)
T PRK07112 93 ATGPYVTIAHVRGKVNAGGIGFVAASDIVIADE-TAPFSLSELLFGLIPACVLPFLIRRIGTQKAHYMTLMTQPVTAQQ- 170 (255)
T ss_pred HcCCCCEEEEEecEEEcchhHHHHcCCEEEEcC-CCEEeCchhhhccCcchhhHHHHHHhCHHHHHHHHHhCCcccHHH-
Confidence 456799999999999999998888899999987 46665511 111 1111 334444332
Q ss_pred CCchhhccccCceeeEecCHHHHHHHHHHHHhcC
Q psy11283 228 GGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFL 261 (314)
Q Consensus 228 GGa~~h~~~~Gv~d~~~~de~~a~~~ir~~l~~l 261 (314)
+...|+++.+++++++....+.+-++.+
T Consensus 171 ------A~~~Glv~~vv~~~~~~~~~~a~~l~~~ 198 (255)
T PRK07112 171 ------AFSWGLVDAYGANSDTLLRKHLLRLRCL 198 (255)
T ss_pred ------HHHcCCCceecCcHHHHHHHHHHHHHhC
Confidence 2468999999987654444333333333
No 34
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=97.83 E-value=0.00027 Score=65.40 Aligned_cols=145 Identities=17% Similarity=0.205 Sum_probs=87.2
Q ss_pred EEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecC-----CCcccccch----hHHhh----HHHHHHHHHHhc
Q psy11283 104 IFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDS-----GGARIQEGV----ESLAA----YSSVFQRNILAS 170 (314)
Q Consensus 104 v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds-----~Garl~eg~----~~l~~----~~~~~~~~~~~~ 170 (314)
|.-|++. ..-+++..-.+.+.++++.+. ..+-+|.|.-. .|..+.+-. ..... +.+++.. +..
T Consensus 15 itlnrp~-~~Nal~~~~~~~l~~al~~~~-~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~--l~~ 90 (255)
T PRK08150 15 IGLNRPA-KRNALNDGLIAALRAAFARLP-EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDK--IQY 90 (255)
T ss_pred EEEcCCc-cccCCCHHHHHHHHHHHHHhh-cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHH--HHh
Confidence 3344433 345889999999999998876 55666666543 344443210 00001 1122222 345
Q ss_pred CCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEc-----------cHhhhhh-----------hhcccCCccccC
Q psy11283 171 GVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFIT-----------GPDVIKS-----------VTNEDISQEELG 228 (314)
Q Consensus 171 ~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~-----------GP~vv~~-----------~~ge~v~~~~lG 228 (314)
...|+|+.|-|.|+|||......||++|+.++ +++++. |+..+.. .+|+.++.++
T Consensus 91 ~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~e-- 167 (255)
T PRK08150 91 GRVPVIAALHGAVVGGGLELASAAHIRVADES-TYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQE-- 167 (255)
T ss_pred CCCCEEEEECCEEEcHHHHHHHhCCEEEEeCC-CEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHH--
Confidence 67999999999999999988888999999974 666651 1111111 1444454443
Q ss_pred CchhhccccCceeeEecCHH---HHHHHHHHHHhc
Q psy11283 229 GAKTHTSVSGVAHNAFSNDI---DAIQNVRHLLGF 260 (314)
Q Consensus 229 Ga~~h~~~~Gv~d~~~~de~---~a~~~ir~~l~~ 260 (314)
+...|++|.++++++ ++.+.++++...
T Consensus 168 -----A~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 197 (255)
T PRK08150 168 -----GERLGLAQYLVPAGEALDKAMELARRIAQN 197 (255)
T ss_pred -----HHHcCCccEeeCchHHHHHHHHHHHHHHhC
Confidence 246899999998653 344444444433
No 35
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=97.78 E-value=1.9e-05 Score=77.22 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=33.5
Q ss_pred CCceeEecccCC----CceeEEEEEECCeEEEEEeeCCcc
Q psy11283 277 SREFFEIQPKYA----KNIIVGFARINGHSVGIVANQPKV 312 (314)
Q Consensus 277 ~~~f~E~~~~~a----~~vvtg~arl~G~~VGvvAn~p~~ 312 (314)
.++|+|++++|+ ++|||||+||+|+||+|||||+.+
T Consensus 150 ~ddf~EL~Gdr~~~dD~aIVtG~grI~GrpV~VIandkg~ 189 (431)
T PLN03230 150 TDKWVELHGDRAGFDDPAIVCGIGSMEGMSFMFIGHQKGR 189 (431)
T ss_pred hhHHhhhcCcccCCCCCCeEEEEEEECCEEEEEEEeccCc
Confidence 568999999999 999999999999999999999843
No 36
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=97.78 E-value=0.00025 Score=65.76 Aligned_cols=152 Identities=18% Similarity=0.184 Sum_probs=89.2
Q ss_pred CCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEec-------CCCcccccch------hHH-hhHHHHH
Q psy11283 98 NGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLND-------SGGARIQEGV------ESL-AAYSSVF 163 (314)
Q Consensus 98 ~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~d-------s~Garl~eg~------~~l-~~~~~~~ 163 (314)
+|.-+.|.-|++.. --+++..-...+..+++.+.+..+-+|.|.- |+|..+.+-. ..+ ..+.+++
T Consensus 11 ~~~v~~itlnrp~~-~Nal~~~~~~~l~~al~~~~~d~v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~ 89 (261)
T PRK11423 11 INKIATITFNNPAK-RNALSKVLIDDLMQALSDLNRPEIRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQIL 89 (261)
T ss_pred ECCEEEEEEcCccc-cCCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHH
Confidence 34334444555443 3588888889999999988776655566642 2334442210 001 1111222
Q ss_pred HHHHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEc-----------c---------Hhhhhh--hhccc
Q psy11283 164 QRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFIT-----------G---------PDVIKS--VTNED 221 (314)
Q Consensus 164 ~~~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~-----------G---------P~vv~~--~~ge~ 221 (314)
.. ......|+|+.|-|.|+|||......||++|+.++ +++++. | |...+. .+|+.
T Consensus 90 ~~--i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~l~g~~ 166 (261)
T PRK11423 90 RM--IQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAAST-STFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASP 166 (261)
T ss_pred HH--HHhCCCCEEEEEecEEechHHHHHHhCCEEEecCC-CEecCchhhcCCCCCccHHHHHHHHhHHHHHHHHHHcCCC
Confidence 22 34567999999999999999888888999999874 666541 1 111111 14444
Q ss_pred CCccccCCchhhccccCceeeEecCHH---HHHHHHHHHHhc
Q psy11283 222 ISQEELGGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLLGF 260 (314)
Q Consensus 222 v~~~~lGGa~~h~~~~Gv~d~~~~de~---~a~~~ir~~l~~ 260 (314)
++.++. ...|+++.++++++ .+.+.++++...
T Consensus 167 ~~a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~l~~~ 201 (261)
T PRK11423 167 ITAQRA-------LAVGILNHVVEVEELEDFTLQMAHHISEK 201 (261)
T ss_pred cCHHHH-------HHcCCcCcccCHHHHHHHHHHHHHHHHhc
Confidence 554432 46899999998642 344445554443
No 37
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=97.76 E-value=0.00042 Score=63.99 Aligned_cols=139 Identities=17% Similarity=0.259 Sum_probs=85.0
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHhC-CCeEEEec-----CCCcccccch-----hHHh-hHHHHHHHHHHhcCCCCEEEEE
Q psy11283 112 FGGSLSSVHAEKICKIMDQAMLTG-APIVGLND-----SGGARIQEGV-----ESLA-AYSSVFQRNILASGVVPQISLI 179 (314)
Q Consensus 112 ~gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~d-----s~Garl~eg~-----~~l~-~~~~~~~~~~~~~~~VP~isvv 179 (314)
...+++..-.+.+.++++.+.+.. +-+|.|.- |.|..+++-. ..+. ...+++.. .....+|+|+.|
T Consensus 22 ~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~--l~~~~kPvIAav 99 (255)
T PRK09674 22 ARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQR--LQAFNKPLIAAV 99 (255)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHH--HHhCCCCEEEEE
Confidence 446899999999999999887654 45566643 2333443210 0010 01112221 345679999999
Q ss_pred eCCCCccccccccCCCEEEEecCceeEEE----------cc-Hhhhhhh-----------hcccCCccccCCchhhcccc
Q psy11283 180 LGPCAGGAVYSPAITDFTFMVEHSSYLFI----------TG-PDVIKSV-----------TNEDISQEELGGAKTHTSVS 237 (314)
Q Consensus 180 ~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~----------~G-P~vv~~~-----------~ge~v~~~~lGGa~~h~~~~ 237 (314)
-|+|+|||......||++|+.++ +++++ .| ...+... +|+.++.+ +. ...
T Consensus 100 ~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~-----eA--~~~ 171 (255)
T PRK09674 100 NGYALGAGCELALLCDIVIAGEN-ARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQ-----QA--QQA 171 (255)
T ss_pred CCEeehHHHHHHHhCCEEEecCC-CEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHH-----HH--HHc
Confidence 99999999988888999999974 66654 11 1111111 34444443 33 358
Q ss_pred CceeeEecCHH---HHHHHHHHHHhc
Q psy11283 238 GVAHNAFSNDI---DAIQNVRHLLGF 260 (314)
Q Consensus 238 Gv~d~~~~de~---~a~~~ir~~l~~ 260 (314)
|++|.++++++ ++.+.++++...
T Consensus 172 Glv~~vv~~~~~~~~a~~~a~~l~~~ 197 (255)
T PRK09674 172 GLVSEVFPPELTLERALQLASKIARH 197 (255)
T ss_pred CCCcEecChHHHHHHHHHHHHHHHhC
Confidence 99999997653 455566666544
No 38
>PRK05869 enoyl-CoA hydratase; Validated
Probab=97.74 E-value=0.00037 Score=63.18 Aligned_cols=147 Identities=12% Similarity=0.104 Sum_probs=84.9
Q ss_pred EEEEcccccCCCcCHHHHHHHHHHHHHHHH-hCCCeEEEecC-----CCcccccch----hH---H-hhHHHHHHHHHHh
Q psy11283 104 IFSQDFTVFGGSLSSVHAEKICKIMDQAML-TGAPIVGLNDS-----GGARIQEGV----ES---L-AAYSSVFQRNILA 169 (314)
Q Consensus 104 v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~-~~lPvV~l~ds-----~Garl~eg~----~~---l-~~~~~~~~~~~~~ 169 (314)
+.-|++. . -++++.....+..+++.+.+ ..+-+|.|.-. .|+.+.+-. .. . ..+.+++.+ ..
T Consensus 21 itlnrp~-~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~--i~ 96 (222)
T PRK05869 21 LLLSRPP-T-NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDA--VA 96 (222)
T ss_pred EEECCCC-C-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHH--HH
Confidence 3344454 3 58889999999988887765 45666666532 344443210 00 0 011122222 34
Q ss_pred cCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEc-----------cHhhhhhhhccc------CCccccCCchh
Q psy11283 170 SGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFIT-----------GPDVIKSVTNED------ISQEELGGAKT 232 (314)
Q Consensus 170 ~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~-----------GP~vv~~~~ge~------v~~~~lGGa~~ 232 (314)
...+|+|+.|.|.|+|||......||++|+.+ ++++.+. |...+...+|.. ++.+.+.+.+.
T Consensus 97 ~~~kPvIAav~G~a~GgG~~lalacD~ria~~-~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA 175 (222)
T PRK05869 97 AIPKPTVAAITGYALGAGLTLALAADWRVSGD-NVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEA 175 (222)
T ss_pred hCCCCEEEEEcCEeecHHHHHHHhCCEEEecC-CCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHH
Confidence 56799999999999999998888899999987 4666551 111122222211 12223333332
Q ss_pred hccccCceeeEecCHHHHHHHHHHHH
Q psy11283 233 HTSVSGVAHNAFSNDIDAIQNVRHLL 258 (314)
Q Consensus 233 h~~~~Gv~d~~~~de~~a~~~ir~~l 258 (314)
...|+++.+++++ +..+.+.++.
T Consensus 176 --~~~Glv~~vv~~~-~l~~~a~~~a 198 (222)
T PRK05869 176 --LALGLIDEMVAPD-DVYDAAAAWA 198 (222)
T ss_pred --HHCCCCCEeeCch-HHHHHHHHHH
Confidence 4689999999765 3344444444
No 39
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=97.73 E-value=0.00048 Score=64.18 Aligned_cols=144 Identities=16% Similarity=0.239 Sum_probs=85.4
Q ss_pred EEEEEcccccCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEecCC-----Ccccccch---------------hHHh----
Q psy11283 103 FIFSQDFTVFGGSLSSVHAEKICKIMDQAMLT-GAPIVGLNDSG-----GARIQEGV---------------ESLA---- 157 (314)
Q Consensus 103 ~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~ds~-----Garl~eg~---------------~~l~---- 157 (314)
.|.-|.+. ..-+++..-.+.+.++++.+.+. .+-+|.|.-.+ |..+.+-. ..+.
T Consensus 18 ~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (272)
T PRK06142 18 QVTLNRPG-KGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREIL 96 (272)
T ss_pred EEEEcCCC-ccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHH
Confidence 33344433 34678899999999999988754 46667766433 33332200 0010
Q ss_pred hHHHHHHHHHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEc----------c-H----hh-----hhh-
Q psy11283 158 AYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFIT----------G-P----DV-----IKS- 216 (314)
Q Consensus 158 ~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~----------G-P----~v-----v~~- 216 (314)
.+.+++.. ......|+|+.|-|.|+|||......||++|+.++ +++++. | . +. ...
T Consensus 97 ~~~~~~~~--i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l 173 (272)
T PRK06142 97 RLQAAINA--VADCRKPVIAAVQGWCIGGGVDLISACDMRYASAD-AKFSVREVDLGMVADVGSLQRLPRIIGDGHLREL 173 (272)
T ss_pred HHHHHHHH--HHhCCCCEEEEecCccccchHHHHHhCCEEEecCC-CeecchhhhhCCCCCchHHHHHHHHhCHHHHHHH
Confidence 11112211 34567999999999999999988888999999874 666551 1 1 11 111
Q ss_pred -hhcccCCccccCCchhhccccCceeeEecCHHHHHHHHHHH
Q psy11283 217 -VTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHL 257 (314)
Q Consensus 217 -~~ge~v~~~~lGGa~~h~~~~Gv~d~~~~de~~a~~~ir~~ 257 (314)
.+|+.++.++ +...|+++.++++.++..+.+.++
T Consensus 174 ~l~g~~~~a~e-------A~~~GLv~~vv~~~~~l~~~a~~~ 208 (272)
T PRK06142 174 ALTGRDIDAAE-------AEKIGLVNRVYDDADALLAAAHAT 208 (272)
T ss_pred HHhCCCcCHHH-------HHHcCCccEecCCHHHHHHHHHHH
Confidence 1444555443 246899999998633333333333
No 40
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=97.72 E-value=0.00067 Score=62.19 Aligned_cols=141 Identities=16% Similarity=0.205 Sum_probs=83.6
Q ss_pred CCcCHHHHHHHHHHHHHHHHhCC--CeEEEec-----CCCcccccch------hHHhhHHHHHHH--HHHhcCCCCEEEE
Q psy11283 114 GSLSSVHAEKICKIMDQAMLTGA--PIVGLND-----SGGARIQEGV------ESLAAYSSVFQR--NILASGVVPQISL 178 (314)
Q Consensus 114 Gs~g~~~~~K~~r~~~~A~~~~l--PvV~l~d-----s~Garl~eg~------~~l~~~~~~~~~--~~~~~~~VP~isv 178 (314)
-+++..-.+.+.++++.+.+..- .+|.+.. |+|+.+.+-. .....+.+.+.. ........|+|+.
T Consensus 21 Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 100 (239)
T PLN02267 21 HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAA 100 (239)
T ss_pred CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 35888888899999998876543 3455443 3455543210 000111111111 1134567999999
Q ss_pred EeCCCCccccccccCCCEEEEecCceeEEE-------ccHh-------------hh--h-hhhcccCCccccCCchhhcc
Q psy11283 179 ILGPCAGGAVYSPAITDFTFMVEHSSYLFI-------TGPD-------------VI--K-SVTNEDISQEELGGAKTHTS 235 (314)
Q Consensus 179 v~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~-------~GP~-------------vv--~-~~~ge~v~~~~lGGa~~h~~ 235 (314)
|-|.|+|||......||++|+.++.+++++ ..|. .. + ..+|+.++.++ +.
T Consensus 101 V~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~llltG~~~~a~e-------A~ 173 (239)
T PLN02267 101 VTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVLLRAAKLTAEE-------AV 173 (239)
T ss_pred ECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHHHHHHcCCcCCHHH-------HH
Confidence 999999999877778999999865555542 1121 11 1 11344555443 24
Q ss_pred ccCceeeEecCHHHHHHHHHHHHhcC
Q psy11283 236 VSGVAHNAFSNDIDAIQNVRHLLGFL 261 (314)
Q Consensus 236 ~~Gv~d~~~~de~~a~~~ir~~l~~l 261 (314)
..|++|.+++++++.++.++++...+
T Consensus 174 ~~Glv~~vv~~~~~l~~~a~~~A~~i 199 (239)
T PLN02267 174 EMGIVDSAHDSAEETVEAAVRLGEEL 199 (239)
T ss_pred HCCCcceecCCHHHHHHHHHHHHHHH
Confidence 68999999986555555555555444
No 41
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=97.72 E-value=0.00055 Score=63.22 Aligned_cols=149 Identities=18% Similarity=0.259 Sum_probs=97.0
Q ss_pred EEEEE-EcccccCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEecC-----CCcccccch-----hHHh-hHH---HHHHH
Q psy11283 102 VFIFS-QDFTVFGGSLSSVHAEKICKIMDQAMLT-GAPIVGLNDS-----GGARIQEGV-----ESLA-AYS---SVFQR 165 (314)
Q Consensus 102 v~v~a-~D~t~~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~ds-----~Garl~eg~-----~~l~-~~~---~~~~~ 165 (314)
|+++- |.+..+ -+++..-...+..+++.+... .+.+|.|.-+ .|+.+.+-. .... .+. +++..
T Consensus 15 v~~itlnrp~~~-Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (257)
T COG1024 15 IAVITLNRPEKL-NALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRA 93 (257)
T ss_pred EEEEEecCcccc-cCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHH
Confidence 44444 333333 689999999999999999887 6777877643 344443210 0001 111 12222
Q ss_pred HHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEc----------c-----Hhh------hh-hhhcccCC
Q psy11283 166 NILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFIT----------G-----PDV------IK-SVTNEDIS 223 (314)
Q Consensus 166 ~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~----------G-----P~v------v~-~~~ge~v~ 223 (314)
......|+|+.|-|.|+|||.-....||++|+.+ ++++++- | |+. .+ ..+|+.++
T Consensus 94 --l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~-~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~ 170 (257)
T COG1024 94 --LADLPKPVIAAVNGYALGGGLELALACDIRIAAE-DAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPIS 170 (257)
T ss_pred --HHhCCCCEEEEEcceEeechhhhhhcCCeEEecC-CcEecCcccccccCCCCcHHHHHHHhcCHHHHHHHHHcCCcCC
Confidence 4567899999999999999988877899999986 4666551 1 111 11 24666666
Q ss_pred ccccCCchhhccccCceeeEecCHHHHHHHHHHHHhcC
Q psy11283 224 QEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFL 261 (314)
Q Consensus 224 ~~~lGGa~~h~~~~Gv~d~~~~de~~a~~~ir~~l~~l 261 (314)
.++. ...|+++.++++.++.++.++++...+
T Consensus 171 a~eA-------~~~Glv~~vv~~~~~l~~~a~~~a~~~ 201 (257)
T COG1024 171 AAEA-------LELGLVDEVVPDAEELLERALELARRL 201 (257)
T ss_pred HHHH-------HHcCCcCeeeCCHHHHHHHHHHHHHHH
Confidence 5542 578999999987666666666666554
No 42
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=97.71 E-value=0.00075 Score=62.13 Aligned_cols=135 Identities=12% Similarity=0.168 Sum_probs=82.1
Q ss_pred CCCcCHHHHHHHHHHHHHHHHhC-CCeEEEecC-----CCcccccch------hHHhhHHHHHHHHHHhcCCCCEEEEEe
Q psy11283 113 GGSLSSVHAEKICKIMDQAMLTG-APIVGLNDS-----GGARIQEGV------ESLAAYSSVFQRNILASGVVPQISLIL 180 (314)
Q Consensus 113 gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~ds-----~Garl~eg~------~~l~~~~~~~~~~~~~~~~VP~isvv~ 180 (314)
.-+++..-..-+.++++.+.+.. +.+|.|.-. .|..+.+-. ..+.. ..++.. ......|+|+.|.
T Consensus 26 ~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~-~~~~~~--l~~~~kPvIaav~ 102 (249)
T PRK07110 26 KNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTE-ANLYSL--ALNCPIPVIAAMQ 102 (249)
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhh-HHHHHH--HHcCCCCEEEEec
Confidence 46888888888988888877654 566766543 333332210 00000 122222 3467899999999
Q ss_pred CCCCccccccccCCCEEEEecCceeEEE-----------ccHhhhhhh-----------hcccCCccccCCchhhccccC
Q psy11283 181 GPCAGGAVYSPAITDFTFMVEHSSYLFI-----------TGPDVIKSV-----------TNEDISQEELGGAKTHTSVSG 238 (314)
Q Consensus 181 G~~~Gg~a~~~~~~D~vi~~~~~a~i~~-----------~GP~vv~~~-----------~ge~v~~~~lGGa~~h~~~~G 238 (314)
|.|+|||......||++|+.++ +.+.+ .+...+... +|+.++.+ +. ...|
T Consensus 103 G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~-----eA--~~~G 174 (249)
T PRK07110 103 GHAIGGGLVLGLYADIVVLSRE-SVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGA-----EL--KKRG 174 (249)
T ss_pred CceechHHHHHHhCCEEEEeCC-CEecCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCccCHH-----HH--HHcC
Confidence 9999999988889999999975 55444 111112221 34444444 32 4689
Q ss_pred ceeeEecCHHHHHHHHHHHHh
Q psy11283 239 VAHNAFSNDIDAIQNVRHLLG 259 (314)
Q Consensus 239 v~d~~~~de~~a~~~ir~~l~ 259 (314)
+++.++++++ ..+.+.++..
T Consensus 175 lv~~vv~~~~-l~~~a~~~a~ 194 (249)
T PRK07110 175 VPFPVLPRAE-VLEKALELAR 194 (249)
T ss_pred CCeEEeChHH-HHHHHHHHHH
Confidence 9999997653 3344444433
No 43
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=97.70 E-value=0.00051 Score=63.77 Aligned_cols=96 Identities=17% Similarity=0.210 Sum_probs=61.8
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHh-C-CCeEEEec-----CCCcccccch----------hHHhhHHHHHHH--HHHhcCC
Q psy11283 112 FGGSLSSVHAEKICKIMDQAMLT-G-APIVGLND-----SGGARIQEGV----------ESLAAYSSVFQR--NILASGV 172 (314)
Q Consensus 112 ~gGs~g~~~~~K~~r~~~~A~~~-~-lPvV~l~d-----s~Garl~eg~----------~~l~~~~~~~~~--~~~~~~~ 172 (314)
...+++..-.+.+.++++.+.+. . +=+|.|.- |.|..+.+-. .........+.. ..+....
T Consensus 24 ~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 103 (266)
T PRK05981 24 VMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLP 103 (266)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCC
Confidence 44688899999999999988754 2 55565543 2334443210 000111111111 1135678
Q ss_pred CCEEEEEeCCCCccccccccCCCEEEEecCceeEEE
Q psy11283 173 VPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI 208 (314)
Q Consensus 173 VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~ 208 (314)
.|+|+.|-|.|+|||......||++|+.++ +++.+
T Consensus 104 kpvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~ 138 (266)
T PRK05981 104 CPIVTAVNGPAAGVGMSFALMGDLILCARS-AYFLQ 138 (266)
T ss_pred CCEEEEECCEeehHHHHHHHhCCEEEecCC-CEEec
Confidence 999999999999999988888999999874 66543
No 44
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=97.69 E-value=0.00086 Score=61.89 Aligned_cols=152 Identities=16% Similarity=0.206 Sum_probs=90.1
Q ss_pred ECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhC-CCeEEEec-----CCCcccccchh-H----HhhHHHHHHH
Q psy11283 97 VNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTG-APIVGLND-----SGGARIQEGVE-S----LAAYSSVFQR 165 (314)
Q Consensus 97 I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~d-----s~Garl~eg~~-~----l~~~~~~~~~ 165 (314)
++|.-+.|.-|++. . -+++..-.+.+.++++.+.+.. +-+|.|.- |+|..+.+-.. . ...+.+++..
T Consensus 7 ~~~~v~~itlnrp~-~-Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 84 (251)
T TIGR03189 7 RDGKLLRLRLARPK-A-NIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIA 84 (251)
T ss_pred eeCCEEEEEeCCCC-c-CCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHH
Confidence 44433334445553 2 6899999999999998887554 45666643 33444433110 0 1111122221
Q ss_pred HHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE----cc--Hhh----hhhh-----------hcccCCc
Q psy11283 166 NILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI----TG--PDV----IKSV-----------TNEDISQ 224 (314)
Q Consensus 166 ~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~----~G--P~v----v~~~-----------~ge~v~~ 224 (314)
.....+|+|+.|.|.|+|||......||++|+.++ +++++ -| |.. +... +|+.++.
T Consensus 85 --l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~~~~~l~~~vg~~~a~~l~ltg~~~~a 161 (251)
T TIGR03189 85 --MLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPD-AKLGQPEIVLGVFAPAASCLLPERMGRVAAEDLLYSGRSIDG 161 (251)
T ss_pred --HHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCC-CEEeCchhhcCCCCCchHHHHHHHhCHHHHHHHHHcCCCCCH
Confidence 34567999999999999999988888999999874 66555 11 111 1111 3344443
Q ss_pred cccCCchhhccccCceeeEecCHH-HHHHHH-HHHHhc
Q psy11283 225 EELGGAKTHTSVSGVAHNAFSNDI-DAIQNV-RHLLGF 260 (314)
Q Consensus 225 ~~lGGa~~h~~~~Gv~d~~~~de~-~a~~~i-r~~l~~ 260 (314)
+ +. ...|+++.++++++ ++++.+ +++...
T Consensus 162 ~-----eA--~~~Glv~~v~~~~~~~a~~~~a~~la~~ 192 (251)
T TIGR03189 162 A-----EG--ARIGLANAVAEDPENAALAWFDEHPAKL 192 (251)
T ss_pred H-----HH--HHCCCcceecCcHHHHHHHHHHHHHHhC
Confidence 3 32 46899999998654 445553 455443
No 45
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=97.68 E-value=0.00052 Score=64.18 Aligned_cols=151 Identities=13% Similarity=0.184 Sum_probs=88.5
Q ss_pred EEEEEEcccccCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEecC-----CCcccccchh-----H---HhhHHHHHHH--
Q psy11283 102 VFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLT-GAPIVGLNDS-----GGARIQEGVE-----S---LAAYSSVFQR-- 165 (314)
Q Consensus 102 v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~ds-----~Garl~eg~~-----~---l~~~~~~~~~-- 165 (314)
|+++-.|..-..-++...-...+.++++.+... .+-+|.|.-. .|..+.+-.. . .....+.+..
T Consensus 18 va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (275)
T PRK09120 18 IAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWW 97 (275)
T ss_pred EEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHH
Confidence 444444433344688888888899999888754 4456666443 3344432100 0 0011111111
Q ss_pred HHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEc----------c-Hhhhhh-----------hhcccCC
Q psy11283 166 NILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFIT----------G-PDVIKS-----------VTNEDIS 223 (314)
Q Consensus 166 ~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~----------G-P~vv~~-----------~~ge~v~ 223 (314)
..+....+|+|+.|-|.|+|||......||++|+.+ ++++.+. | ...+.. .+|+.++
T Consensus 98 ~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~~ 176 (275)
T PRK09120 98 RRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAAD-EAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFT 176 (275)
T ss_pred HHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeC-CcEecCCccccCCCCCcchHHHHHHHcCHHHHHHHHhcCCccC
Confidence 113456799999999999999998888899999987 4666550 1 111111 2445555
Q ss_pred ccccCCchhhccccCceeeEecCHH---HHHHHHHHHHhc
Q psy11283 224 QEELGGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLLGF 260 (314)
Q Consensus 224 ~~~lGGa~~h~~~~Gv~d~~~~de~---~a~~~ir~~l~~ 260 (314)
.++ +...|+++.++++++ ++.+.++++.+.
T Consensus 177 A~e-------A~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 209 (275)
T PRK09120 177 GRK-------AAEMGLVNESVPLAQLRARTRELAAKLLEK 209 (275)
T ss_pred HHH-------HHHcCCcceecCHHHHHHHHHHHHHHHHhC
Confidence 443 246899999997643 344555555544
No 46
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=97.68 E-value=0.00022 Score=65.21 Aligned_cols=153 Identities=20% Similarity=0.244 Sum_probs=93.0
Q ss_pred CEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCC-CeEEEecCCCc-----ccccchh----HHhhHHHHHHHH--
Q psy11283 99 GRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGA-PIVGLNDSGGA-----RIQEGVE----SLAAYSSVFQRN-- 166 (314)
Q Consensus 99 Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~l-PvV~l~ds~Ga-----rl~eg~~----~l~~~~~~~~~~-- 166 (314)
+.-..+.-|.+. ..-+++....+.+..+++.+.+..- -+|.+.-+++. .+.+-.. ....+.+.+...
T Consensus 6 ~~v~~i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~ 84 (245)
T PF00378_consen 6 DGVATITLNRPE-KRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLS 84 (245)
T ss_dssp TTEEEEEEECGG-GTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCC-CCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccccchhhccccc
Confidence 333344444443 4568999999999999999988653 46666544333 3321111 111122222221
Q ss_pred HHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE--------------------ccHhhhhh--hhcccCCc
Q psy11283 167 ILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI--------------------TGPDVIKS--VTNEDISQ 224 (314)
Q Consensus 167 ~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~--------------------~GP~vv~~--~~ge~v~~ 224 (314)
.......|+|++|.|.|+|||......||++|+.++ +.+++ .|+..... .+|+.++.
T Consensus 85 ~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~g~~~~a 163 (245)
T PF00378_consen 85 RLANFPKPTIAAVNGHAVGGGFELALACDFRIAAED-AKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLTGEPISA 163 (245)
T ss_dssp HHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETT-TEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHHTCEEEH
T ss_pred cchhhhhheeecccccccccccccccccceEEeecc-cceeeeecccCcccccccccccceeeecccccccccccccchh
Confidence 134677999999999999999987778999999985 66655 11111111 14555554
Q ss_pred cccCCchhhccccCceeeEecCHH---HHHHHHHHHHhc
Q psy11283 225 EELGGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLLGF 260 (314)
Q Consensus 225 ~~lGGa~~h~~~~Gv~d~~~~de~---~a~~~ir~~l~~ 260 (314)
++. ...|++|.++++++ .+++.++++...
T Consensus 164 ~eA-------~~~Glv~~v~~~~~l~~~a~~~a~~l~~~ 195 (245)
T PF00378_consen 164 EEA-------LELGLVDEVVPDEELDEEALELAKRLAAK 195 (245)
T ss_dssp HHH-------HHTTSSSEEESGGGHHHHHHHHHHHHHTS
T ss_pred HHH-------HhhcceeEEcCchhhhHHHHHHHHHHhcC
Confidence 432 46899999998876 444455555443
No 47
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=97.68 E-value=0.00015 Score=63.66 Aligned_cols=89 Identities=17% Similarity=0.234 Sum_probs=69.5
Q ss_pred CCcCHHHHHHHHHHHHHHHHhCC-CeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCcccccccc
Q psy11283 114 GSLSSVHAEKICKIMDQAMLTGA-PIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPA 192 (314)
Q Consensus 114 Gs~g~~~~~K~~r~~~~A~~~~l-PvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~ 192 (314)
|.+++.....+.|.++.|.+.+. +||..+||+|..+... -.+... +....+|+++.|.|.|.++|++...
T Consensus 8 g~I~~~~~~~l~~~l~~a~~~~~~~ivl~inspGG~v~~~-------~~I~~~--l~~~~~pvva~V~g~AaSaG~~ia~ 78 (178)
T cd07021 8 GEIDPGLAAFVERALKEAKEEGADAVVLDIDTPGGRVDSA-------LEIVDL--ILNSPIPTIAYVNDRAASAGALIAL 78 (178)
T ss_pred eEECHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCCHHHH-------HHHHHH--HHhCCCCEEEEECCchHHHHHHHHH
Confidence 77888889999999999999875 5777799999765321 222222 3345699999999999999998888
Q ss_pred CCCEEEEecCceeEEEccHh
Q psy11283 193 ITDFTFMVEHSSYLFITGPD 212 (314)
Q Consensus 193 ~~D~vi~~~~~a~i~~~GP~ 212 (314)
.||+++|.+ ++.++..||-
T Consensus 79 a~d~i~m~p-~a~iG~~~~v 97 (178)
T cd07021 79 AADEIYMAP-GATIGAAEPI 97 (178)
T ss_pred hCCeEEECC-CCeEecCeeE
Confidence 899999987 5788877764
No 48
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=97.67 E-value=0.00066 Score=62.69 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=65.4
Q ss_pred EEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEec-----CCCcccccchh------HH-hhHHHHHHH--HHH
Q psy11283 103 FIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLND-----SGGARIQEGVE------SL-AAYSSVFQR--NIL 168 (314)
Q Consensus 103 ~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~d-----s~Garl~eg~~------~l-~~~~~~~~~--~~~ 168 (314)
.|.-|++. .--+++..-...+.++++.+.+..+-+|.|.- |.|..+++-.. .. ....+.+.. ..+
T Consensus 11 ~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 89 (256)
T TIGR02280 11 RLTLNRPD-KLNSFTAEMHLELREALERVERDDARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRL 89 (256)
T ss_pred EEEecCcc-cccCCCHHHHHHHHHHHHHHhcCCcEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHH
Confidence 34444443 23478899999999999998876655565543 33444432110 00 001111111 113
Q ss_pred hcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE
Q psy11283 169 ASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI 208 (314)
Q Consensus 169 ~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~ 208 (314)
....+|+|+.|.|.|+|||......||++|+.++ +.+++
T Consensus 90 ~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~-a~f~~ 128 (256)
T TIGR02280 90 RALPLPVVCAVNGVAAGAGANLALACDIVLAAES-ARFIQ 128 (256)
T ss_pred HhCCCCEEEEECCeeehHHHHHHHhCCEEEecCC-CEEeC
Confidence 4567999999999999999988888999999875 55553
No 49
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=97.66 E-value=0.00075 Score=62.58 Aligned_cols=140 Identities=15% Similarity=0.141 Sum_probs=83.8
Q ss_pred CCCcCHHHHHHHHHHHHHHHHhC-CCeEEEec-----CCCcccccch-------hHHhhHHHHHHH--HHHhcCCCCEEE
Q psy11283 113 GGSLSSVHAEKICKIMDQAMLTG-APIVGLND-----SGGARIQEGV-------ESLAAYSSVFQR--NILASGVVPQIS 177 (314)
Q Consensus 113 gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~d-----s~Garl~eg~-------~~l~~~~~~~~~--~~~~~~~VP~is 177 (314)
--+++..-.+.+.++++.+.+.. +-+|.|.- |.|+.+.+-. .......+.+.. ..+.....|+|+
T Consensus 26 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 105 (262)
T PRK07468 26 HNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIG 105 (262)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 45899999999999998886543 45565553 2344443210 000001111111 124567799999
Q ss_pred EEeCCCCccccccccCCCEEEEecCceeEEE-----------ccHhhhhh----------hhcccCCccccCCchhhccc
Q psy11283 178 LILGPCAGGAVYSPAITDFTFMVEHSSYLFI-----------TGPDVIKS----------VTNEDISQEELGGAKTHTSV 236 (314)
Q Consensus 178 vv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~-----------~GP~vv~~----------~~ge~v~~~~lGGa~~h~~~ 236 (314)
.|.|.|.|||......||++|+.++ +++.+ .++..... .+|+.++.+ + +..
T Consensus 106 av~G~a~GgG~~lala~D~ria~~~-a~f~~pe~~~Gl~p~~g~~~~~~~vG~~~a~~lll~g~~~~a~-----e--A~~ 177 (262)
T PRK07468 106 RIQGQAFGGGVGLISVCDVAIAVSG-ARFGLTETRLGLIPATISPYVVARMGEANARRVFMSARLFDAE-----E--AVR 177 (262)
T ss_pred EECCEEEhHHHHHHHhCCEEEEeCC-CEEeCchhccCCCcccchhhHHhhccHHHHHHHHHhCCccCHH-----H--HHH
Confidence 9999999999988888999999874 55554 11111111 134444443 2 246
Q ss_pred cCceeeEecCHH---HHHHHHHHHHhc
Q psy11283 237 SGVAHNAFSNDI---DAIQNVRHLLGF 260 (314)
Q Consensus 237 ~Gv~d~~~~de~---~a~~~ir~~l~~ 260 (314)
.|+++.++++++ ++.+.++++...
T Consensus 178 ~Glv~~v~~~~~l~~~~~~~a~~l~~~ 204 (262)
T PRK07468 178 LGLLSRVVPAERLDAAVEAEVTPYLSC 204 (262)
T ss_pred cCCcceecCHHHHHHHHHHHHHHHHhc
Confidence 899999998653 334456666554
No 50
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=97.65 E-value=0.00064 Score=63.52 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=65.1
Q ss_pred EEEEcccccCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEecC-----CCcccccch---------------hHHhhHHHH
Q psy11283 104 IFSQDFTVFGGSLSSVHAEKICKIMDQAMLT-GAPIVGLNDS-----GGARIQEGV---------------ESLAAYSSV 162 (314)
Q Consensus 104 v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~ds-----~Garl~eg~---------------~~l~~~~~~ 162 (314)
|.-|.+. ..-+++..-.+.+.++++.+.+. .+-+|.|.-+ .|..+.+-. ..+..+.+.
T Consensus 21 itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (275)
T PLN02664 21 LNLNRPS-QRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKF 99 (275)
T ss_pred EEECCCC-ccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHHHHHHH
Confidence 3334443 34588999999999998887654 4566666543 344443210 001111111
Q ss_pred HHH--HHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE
Q psy11283 163 FQR--NILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI 208 (314)
Q Consensus 163 ~~~--~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~ 208 (314)
+.. ..+.....|+|+.|.|.|+|||......||++|+.++ +++.+
T Consensus 100 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~ 146 (275)
T PLN02664 100 LQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSED-AFFSV 146 (275)
T ss_pred HHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCC-CEecc
Confidence 111 1134567999999999999999988888999999874 66655
No 51
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=97.64 E-value=0.00063 Score=62.94 Aligned_cols=151 Identities=16% Similarity=0.163 Sum_probs=88.9
Q ss_pred ECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhC-CCeEEEec-----CCCcccccchh-------HHh----hH
Q psy11283 97 VNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTG-APIVGLND-----SGGARIQEGVE-------SLA----AY 159 (314)
Q Consensus 97 I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~d-----s~Garl~eg~~-------~l~----~~ 159 (314)
++|.-..|.-|++. ..-+++..-.+.+.++++.+.+.. +-+|.|.- |.|+.+.+-.. ... .+
T Consensus 9 ~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (260)
T PRK07511 9 REGSTLVLTLSNPG-ARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGL 87 (260)
T ss_pred eECCEEEEEECCcc-cccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHH
Confidence 33433334444443 345788999999999999887653 44555533 34454432110 000 11
Q ss_pred HHHHHHHHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEc----c--H-----hhhhh-----------h
Q psy11283 160 SSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFIT----G--P-----DVIKS-----------V 217 (314)
Q Consensus 160 ~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~----G--P-----~vv~~-----------~ 217 (314)
..++. .+....+|+|+.|-|.|+|||......||++|+.++ +++.+. | | ..+.. .
T Consensus 88 ~~~~~--~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l 164 (260)
T PRK07511 88 HDWIR--AIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARD-AKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLL 164 (260)
T ss_pred HHHHH--HHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCC-CEEeccccccCcCCCchHHHHHHHHhCHHHHHHHHH
Confidence 11121 134568999999999999999988888999999985 666550 0 1 11111 1
Q ss_pred hcccCCccccCCchhhccccCceeeEecCHH---HHHHHHHHHH
Q psy11283 218 TNEDISQEELGGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLL 258 (314)
Q Consensus 218 ~ge~v~~~~lGGa~~h~~~~Gv~d~~~~de~---~a~~~ir~~l 258 (314)
+|+.++.++ +...|++|.++++++ ++++.++++.
T Consensus 165 tg~~~~a~e-------A~~~Glv~~vv~~~~~~~~a~~~a~~l~ 201 (260)
T PRK07511 165 EGKPISAER-------LHALGVVNRLAEPGQALAEALALADQLA 201 (260)
T ss_pred hCCCCCHHH-------HHHcCCccEeeCchHHHHHHHHHHHHHH
Confidence 444444443 246899999997643 3444444443
No 52
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=97.64 E-value=2.9e-05 Score=73.89 Aligned_cols=35 Identities=20% Similarity=0.430 Sum_probs=32.6
Q ss_pred CCceeEecccCC----CceeEEEEEECCeEEEEEeeCCc
Q psy11283 277 SREFFEIQPKYA----KNIIVGFARINGHSVGIVANQPK 311 (314)
Q Consensus 277 ~~~f~E~~~~~a----~~vvtg~arl~G~~VGvvAn~p~ 311 (314)
.++|+|++++|+ +++|||||||+|+||+||+||+.
T Consensus 83 ~d~f~El~gd~~~~dd~avV~Glgri~GrpV~VIa~dkg 121 (322)
T CHL00198 83 LDEWIELHGDRGGSDDPALVGGIGKINGRTIVFLGHQRG 121 (322)
T ss_pred hHHHHHHccccccCCCCceEEEEEEECCEEEEEEEecCC
Confidence 457999999998 99999999999999999999984
No 53
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=97.64 E-value=0.00071 Score=62.63 Aligned_cols=102 Identities=15% Similarity=0.174 Sum_probs=64.0
Q ss_pred EEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEec-----CCCcccccch-------hHHh-hHHHHHHH--HHH
Q psy11283 104 IFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLND-----SGGARIQEGV-------ESLA-AYSSVFQR--NIL 168 (314)
Q Consensus 104 v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~d-----s~Garl~eg~-------~~l~-~~~~~~~~--~~~ 168 (314)
|.-|++. .--+++..-.+.+..+++.+....+.+|.|.- |.|+.+.+-. .... ...+.+.. ...
T Consensus 17 itlnrp~-~~Nal~~~~~~~l~~~~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 95 (262)
T PRK08140 17 LTLNRPD-KLNSFTREMHRELREALDQVEDDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRL 95 (262)
T ss_pred EEecCCc-ccCCCCHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHH
Confidence 3334443 23578888888899998888744566676653 3344443210 0000 01111111 113
Q ss_pred hcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEE
Q psy11283 169 ASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLF 207 (314)
Q Consensus 169 ~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~ 207 (314)
....+|+|+.|-|.|+|||......||++|+.++ +.+.
T Consensus 96 ~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~ 133 (262)
T PRK08140 96 RALPLPVIAAVNGVAAGAGANLALACDIVLAARS-ASFI 133 (262)
T ss_pred HhCCCCEEEEECCeeehhHHHHHHhCCEEEecCC-CEEe
Confidence 4568999999999999999988888999999874 5554
No 54
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=97.63 E-value=0.00091 Score=63.19 Aligned_cols=141 Identities=15% Similarity=0.122 Sum_probs=85.1
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEec-----CCCcccccchh---------------------HHhhHHHHHH
Q psy11283 112 FGGSLSSVHAEKICKIMDQAMLT-GAPIVGLND-----SGGARIQEGVE---------------------SLAAYSSVFQ 164 (314)
Q Consensus 112 ~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~d-----s~Garl~eg~~---------------------~l~~~~~~~~ 164 (314)
...+++..-..-+.++++.+.+. .+-+|.|.- |.|..+.+-.. ....+.+.+.
T Consensus 24 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (296)
T PRK08260 24 KLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGG 103 (296)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccccccccccchhHHHHHHHHH
Confidence 44688888888999999888654 455666643 33444432100 0001111111
Q ss_pred H--HHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEcc------H-----hhhhhh-----------hcc
Q psy11283 165 R--NILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITG------P-----DVIKSV-----------TNE 220 (314)
Q Consensus 165 ~--~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~G------P-----~vv~~~-----------~ge 220 (314)
. ..+....+|+|+.|-|.|+|||......||++|+.++ +++++.- | ..+... +|+
T Consensus 104 ~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~ 182 (296)
T PRK08260 104 RVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTA-ARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGR 182 (296)
T ss_pred HHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCC-CEEecchhhcCcCCCcchhhhHHHhhCHHHHHHHHHcCC
Confidence 1 1134567999999999999999988889999999874 6665411 1 111111 344
Q ss_pred cCCccccCCchhhccccCceeeEecCHH---HHHHHHHHHHhc
Q psy11283 221 DISQEELGGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLLGF 260 (314)
Q Consensus 221 ~v~~~~lGGa~~h~~~~Gv~d~~~~de~---~a~~~ir~~l~~ 260 (314)
.++.++ +...|+++.++++++ ++++.++++...
T Consensus 183 ~~~a~e-------A~~~GLv~~vv~~~~l~~~a~~~a~~i~~~ 218 (296)
T PRK08260 183 VFDAQE-------ALDGGLVRSVHPPDELLPAARALAREIADN 218 (296)
T ss_pred ccCHHH-------HHHCCCceeecCHHHHHHHHHHHHHHHHhc
Confidence 444432 246899999997653 455566666653
No 55
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=97.63 E-value=0.00046 Score=63.92 Aligned_cols=96 Identities=18% Similarity=0.169 Sum_probs=62.0
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecC-----CCcccccch-----hHHhhHHHHHHH--HHHhcCCCCEEEEE
Q psy11283 112 FGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDS-----GGARIQEGV-----ESLAAYSSVFQR--NILASGVVPQISLI 179 (314)
Q Consensus 112 ~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds-----~Garl~eg~-----~~l~~~~~~~~~--~~~~~~~VP~isvv 179 (314)
...+++..-...+.++++.+....+-+|.|.-. .|+.+.+-. .........+.. ..+....+|+|+.|
T Consensus 26 ~~Nal~~~~~~~l~~~l~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav 105 (260)
T PRK07659 26 ALNALDEPMLKELLQALKEVAESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAI 105 (260)
T ss_pred cccCCCHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 446888999999999999885445666666543 344443210 000111111111 11345679999999
Q ss_pred eCCCCccccccccCCCEEEEecCceeEEE
Q psy11283 180 LGPCAGGAVYSPAITDFTFMVEHSSYLFI 208 (314)
Q Consensus 180 ~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~ 208 (314)
.|.|+|||......||++|+.++ +++.+
T Consensus 106 ~G~a~GgG~~lalacD~ria~~~-a~f~~ 133 (260)
T PRK07659 106 HGPAAGLGLSIALTADYVIADIS-AKLAM 133 (260)
T ss_pred cCceecHHHHHHHhCCEEEEcCC-CEEcC
Confidence 99999999888788999999874 55544
No 56
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=97.62 E-value=0.00088 Score=61.94 Aligned_cols=96 Identities=21% Similarity=0.156 Sum_probs=60.0
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHhC-CCeEEEecCC------Ccccccch----hHHhhHHHHHHH--HHHhcCCCCEEEE
Q psy11283 112 FGGSLSSVHAEKICKIMDQAMLTG-APIVGLNDSG------GARIQEGV----ESLAAYSSVFQR--NILASGVVPQISL 178 (314)
Q Consensus 112 ~gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~ds~------Garl~eg~----~~l~~~~~~~~~--~~~~~~~VP~isv 178 (314)
..-++...-...+.++++.+.+.. +-+|.|.-++ |..+.+-. .....+.+.+.. ..+....+|+|+.
T Consensus 24 ~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 103 (260)
T PRK05809 24 ALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAA 103 (260)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 345888999999999998876543 4455554322 23332200 000011111111 1134567999999
Q ss_pred EeCCCCccccccccCCCEEEEecCceeEEE
Q psy11283 179 ILGPCAGGAVYSPAITDFTFMVEHSSYLFI 208 (314)
Q Consensus 179 v~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~ 208 (314)
|.|.|.|||......||++|+.++ +++.+
T Consensus 104 v~G~a~GgG~~lal~cD~~va~~~-a~f~~ 132 (260)
T PRK05809 104 INGFALGGGCELSMACDIRIASEK-AKFGQ 132 (260)
T ss_pred EcCeeecHHHHHHHhCCEEEeeCC-CEEeC
Confidence 999999999888888999999874 55554
No 57
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=97.62 E-value=0.00096 Score=61.83 Aligned_cols=152 Identities=14% Similarity=0.162 Sum_probs=87.2
Q ss_pred CCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEec-----CCCcccccchh--HHhhHHHHHHH--HH
Q psy11283 98 NGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLT-GAPIVGLND-----SGGARIQEGVE--SLAAYSSVFQR--NI 167 (314)
Q Consensus 98 ~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~d-----s~Garl~eg~~--~l~~~~~~~~~--~~ 167 (314)
+|.-..|.-|.+. ..-+++..-...+..+++.+.+. .+-+|.|.- |+|..+.+-.. ....+.+.+.. ..
T Consensus 15 ~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 93 (261)
T PRK08138 15 ADGVALLRLNRPE-ARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEA 93 (261)
T ss_pred cCCEEEEEEcCCc-ccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHH
Confidence 3433334444443 33588899999999998887654 455666643 23334322000 00011111111 11
Q ss_pred HhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE----------c-cHhhhhh-----------hhcccCCcc
Q psy11283 168 LASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI----------T-GPDVIKS-----------VTNEDISQE 225 (314)
Q Consensus 168 ~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~----------~-GP~vv~~-----------~~ge~v~~~ 225 (314)
+.....|+|+.|.|.|+|||......||++|+.++ +++.+ . +...+.. .+|+.++.+
T Consensus 94 l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~ 172 (261)
T PRK08138 94 IAQCPKPVIAAVNGYALGGGCELAMHADIIVAGES-ASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAP 172 (261)
T ss_pred HHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCC-CEeeCcccccccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCHH
Confidence 34568999999999999999888888999999874 55554 0 1111111 144445544
Q ss_pred ccCCchhhccccCceeeEecCHH---HHHHHHHHHH
Q psy11283 226 ELGGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLL 258 (314)
Q Consensus 226 ~lGGa~~h~~~~Gv~d~~~~de~---~a~~~ir~~l 258 (314)
+ . ...|+++.++++++ ++.+.++++.
T Consensus 173 e-----A--~~~Glv~~vv~~~~l~~~a~~~a~~l~ 201 (261)
T PRK08138 173 E-----A--LAIGLVSEVVEDEQTLPRALELAREIA 201 (261)
T ss_pred H-----H--HHCCCCcEecCchHHHHHHHHHHHHHH
Confidence 3 2 46899999997653 3344444443
No 58
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=97.60 E-value=0.00071 Score=62.44 Aligned_cols=153 Identities=11% Similarity=0.101 Sum_probs=88.0
Q ss_pred CCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEecC-----CCcccccchh--HHhhHHHHHHHHHHh
Q psy11283 98 NGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLT-GAPIVGLNDS-----GGARIQEGVE--SLAAYSSVFQRNILA 169 (314)
Q Consensus 98 ~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~ds-----~Garl~eg~~--~l~~~~~~~~~~~~~ 169 (314)
+|.-+.|.-|.+. .--+++..-.+.+.++++.+.+. .+-+|.|.-+ .|..+.+-.. ......+.+......
T Consensus 10 ~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (254)
T PRK08252 10 RGRVLIITINRPE-ARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTER 88 (254)
T ss_pred ECCEEEEEECCCc-ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHh
Confidence 3433333344443 33578888889999998888654 4667777543 3333322100 000111122222223
Q ss_pred cCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE--------------------ccHhhhhh--hhcccCCcccc
Q psy11283 170 SGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI--------------------TGPDVIKS--VTNEDISQEEL 227 (314)
Q Consensus 170 ~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~--------------------~GP~vv~~--~~ge~v~~~~l 227 (314)
...+|+|+.|-|.|+|||......||++|+.++ +++.+ .|+..... .+|+.++.++
T Consensus 89 ~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~e- 166 (254)
T PRK08252 89 PPRKPLIAAVEGYALAGGFELALACDLIVAARD-AKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAER- 166 (254)
T ss_pred cCCCCEEEEECCEEehHHHHHHHhCCEEEEeCC-CEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCCccCHHH-
Confidence 467999999999999999988888999999874 66654 11111110 1444444443
Q ss_pred CCchhhccccCceeeEecCHH---HHHHHHHHHHh
Q psy11283 228 GGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLLG 259 (314)
Q Consensus 228 GGa~~h~~~~Gv~d~~~~de~---~a~~~ir~~l~ 259 (314)
. ...|++|.++++++ ++.+.++++.+
T Consensus 167 ----A--~~~Glv~~vv~~~~l~~~a~~~a~~l~~ 195 (254)
T PRK08252 167 ----A--HELGLVNRLTEPGQALDAALELAERIAA 195 (254)
T ss_pred ----H--HHcCCcceecCcchHHHHHHHHHHHHHh
Confidence 2 35899999997642 34445555543
No 59
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=97.60 E-value=0.0011 Score=61.36 Aligned_cols=148 Identities=11% Similarity=0.108 Sum_probs=85.8
Q ss_pred EEEEEcccccCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEecCC------Ccccccc----hhHHhhHHHHHHH--HHHh
Q psy11283 103 FIFSQDFTVFGGSLSSVHAEKICKIMDQAMLT-GAPIVGLNDSG------GARIQEG----VESLAAYSSVFQR--NILA 169 (314)
Q Consensus 103 ~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~ds~------Garl~eg----~~~l~~~~~~~~~--~~~~ 169 (314)
.|.-|.+. . -++...-...+.++++.+.+. .+-+|.|.-++ |+.+.+- ......+.+.+.. ....
T Consensus 15 ~itlnrp~-~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 92 (258)
T PRK09076 15 ILTLNNPP-A-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALS 92 (258)
T ss_pred EEEECCCC-c-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHH
Confidence 33444443 3 688899999999999888765 44555554322 2333220 0001111111111 1134
Q ss_pred cCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE-----------ccHhhhhhh-----------hcccCCcccc
Q psy11283 170 SGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI-----------TGPDVIKSV-----------TNEDISQEEL 227 (314)
Q Consensus 170 ~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~-----------~GP~vv~~~-----------~ge~v~~~~l 227 (314)
....|+|+.|.|.|+|||......||++|+.+ .+++.+ .+...+... +|+.++.+
T Consensus 93 ~~~kPvIAav~G~a~GgG~~lalacD~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~-- 169 (258)
T PRK09076 93 AFRGVSIAAINGYAMGGGLECALACDIRIAEE-QAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAA-- 169 (258)
T ss_pred hCCCCEEEEECCEEecHHHHHHHhCCEEEecC-CCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHH--
Confidence 56799999999999999998888899999987 466654 111112222 33444433
Q ss_pred CCchhhccccCceeeEecCHH---HHHHHHHHHHhc
Q psy11283 228 GGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLLGF 260 (314)
Q Consensus 228 GGa~~h~~~~Gv~d~~~~de~---~a~~~ir~~l~~ 260 (314)
+. ...|+++.++++++ ++.+.++++...
T Consensus 170 ---eA--~~~Glv~~vv~~~~l~~~a~~~a~~l~~~ 200 (258)
T PRK09076 170 ---TA--LRIGLVEEVVEKGEAREAALALAQKVANQ 200 (258)
T ss_pred ---HH--HHCCCCceecCchhHHHHHHHHHHHHHhC
Confidence 32 46899999998653 344445555443
No 60
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=97.59 E-value=0.0012 Score=60.96 Aligned_cols=146 Identities=16% Similarity=0.207 Sum_probs=85.1
Q ss_pred EEEEcccccCCCcCHHHHHHHHHHHHHHHHhC-CCeEEEecC-----CCcccccc------hhHHhhHHHHHHH--HHHh
Q psy11283 104 IFSQDFTVFGGSLSSVHAEKICKIMDQAMLTG-APIVGLNDS-----GGARIQEG------VESLAAYSSVFQR--NILA 169 (314)
Q Consensus 104 v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~ds-----~Garl~eg------~~~l~~~~~~~~~--~~~~ 169 (314)
|.-|.+. . -+++..-.+.+.++++.+.+.. +-+|.|.-. .|..+.+- ........+.+.. ..+.
T Consensus 17 itlnrp~-~-Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (257)
T PRK06495 17 VTLDNPP-V-NALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIR 94 (257)
T ss_pred EEECCCc-c-ccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHH
Confidence 3444444 3 6899999999999999887654 445555543 23333220 0011111111111 1134
Q ss_pred cCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE-------ccHh-hhhhh-----------hcccCCccccCCc
Q psy11283 170 SGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI-------TGPD-VIKSV-----------TNEDISQEELGGA 230 (314)
Q Consensus 170 ~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~-------~GP~-vv~~~-----------~ge~v~~~~lGGa 230 (314)
....|+|+.|.|.|+|||......||++|+.++ +++++ .|+. .+... +|+.++.+
T Consensus 95 ~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl~~~~~~l~~~~g~~~a~~lll~g~~~~a~----- 168 (257)
T PRK06495 95 ECAKPVIAAVNGPALGAGLGLVASCDIIVASEN-AVFGLPEIDVGLAGGGKHAMRLFGHSLTRRMMLTGYRVPAA----- 168 (257)
T ss_pred hCCCCEEEEECCeeehhHHHHHHhCCEEEecCC-CEeeChhhccCccccHHHHHHHhCHHHHHHHHHcCCeeCHH-----
Confidence 567999999999999999988888999999874 55544 2221 11111 33444433
Q ss_pred hhhccccCceeeEecCHH---HHHHHHHHHHh
Q psy11283 231 KTHTSVSGVAHNAFSNDI---DAIQNVRHLLG 259 (314)
Q Consensus 231 ~~h~~~~Gv~d~~~~de~---~a~~~ir~~l~ 259 (314)
+. ...|+++.++++++ .+.+.++++..
T Consensus 169 eA--~~~GLv~~vv~~~~~~~~a~~~a~~l~~ 198 (257)
T PRK06495 169 EL--YRRGVIEACLPPEELMPEAMEIAREIAS 198 (257)
T ss_pred HH--HHcCCcceecCHHHHHHHHHHHHHHHHh
Confidence 32 46899999997543 33444444443
No 61
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=97.58 E-value=7.6e-05 Score=69.23 Aligned_cols=33 Identities=21% Similarity=0.505 Sum_probs=29.1
Q ss_pred ceeEeccc--CCC--ceeEEEEEECCeEEEEEeeCCc
Q psy11283 279 EFFEIQPK--YAK--NIIVGFARINGHSVGIVANQPK 311 (314)
Q Consensus 279 ~f~E~~~~--~a~--~vvtg~arl~G~~VGvvAn~p~ 311 (314)
+|+|++++ |++ +|||||+||+|+||+||||||.
T Consensus 29 ~F~El~g~~~~~~d~~vItG~gri~Gr~V~via~~~~ 65 (256)
T PRK12319 29 DFMELHGDRHFRDDGAVVGGIGYLAGQPVTVVGIQKG 65 (256)
T ss_pred hheeccCCCCCCCCCcEEEEEEEECCEEEEEEEeccC
Confidence 49999864 774 6999999999999999999984
No 62
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=97.58 E-value=0.00098 Score=61.83 Aligned_cols=101 Identities=15% Similarity=0.089 Sum_probs=65.0
Q ss_pred EEEEcccccCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEec-----CCCcccccchh---H---HhhHHHHHHHHHHhcC
Q psy11283 104 IFSQDFTVFGGSLSSVHAEKICKIMDQAMLT-GAPIVGLND-----SGGARIQEGVE---S---LAAYSSVFQRNILASG 171 (314)
Q Consensus 104 v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~d-----s~Garl~eg~~---~---l~~~~~~~~~~~~~~~ 171 (314)
|.-|++. ..-+++..-.+.+..+++.+... .+-+|.|.- |+|+.+.+-.. . ...+.+++.. ....
T Consensus 17 Itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~--i~~~ 93 (258)
T PRK06190 17 LTLNRPE-ARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPA--WPAM 93 (258)
T ss_pred EEEcCCc-ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHH--HHhC
Confidence 3334433 44689999999999999888765 345566543 34444432110 0 0011122222 3456
Q ss_pred CCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE
Q psy11283 172 VVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI 208 (314)
Q Consensus 172 ~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~ 208 (314)
..|+|+.|-|.|+|||......||++|+.++ +.+.+
T Consensus 94 ~kPvIAaV~G~a~GgG~~lalacD~~ia~~~-a~f~~ 129 (258)
T PRK06190 94 RKPVIGAINGAAVTGGLELALACDILIASER-ARFAD 129 (258)
T ss_pred CCCEEEEECCEeecHHHHHHHhCCEEEEeCC-CEEEC
Confidence 7999999999999999888888999999874 66654
No 63
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=97.56 E-value=0.00077 Score=63.86 Aligned_cols=94 Identities=14% Similarity=0.235 Sum_probs=62.7
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEec-----CCCcccccchhH------------------------------
Q psy11283 112 FGGSLSSVHAEKICKIMDQAMLT-GAPIVGLND-----SGGARIQEGVES------------------------------ 155 (314)
Q Consensus 112 ~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~d-----s~Garl~eg~~~------------------------------ 155 (314)
.--+++..-...+.++++.+... .+-+|.|.- |+|..+.+-...
T Consensus 30 ~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (302)
T PRK08272 30 KGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMID 109 (302)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccccccccccccccccccccchhh
Confidence 34688899999999999988754 456666653 344444321000
Q ss_pred ---HhhHHHHHHHHHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE
Q psy11283 156 ---LAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI 208 (314)
Q Consensus 156 ---l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~ 208 (314)
+....+++.. +....+|+|+.|-|.|+|||......||++|+.++ +.+++
T Consensus 110 ~~~~~~~~~~~~~--l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~-a~f~~ 162 (302)
T PRK08272 110 YQMMSRFVRGFMS--LWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADD-AKIGY 162 (302)
T ss_pred HHHHHHHHHHHHH--HHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCC-CEecC
Confidence 0001112222 34678999999999999999988888999999975 55543
No 64
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=97.56 E-value=0.0013 Score=60.86 Aligned_cols=153 Identities=16% Similarity=0.222 Sum_probs=90.1
Q ss_pred ECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEecCC-----Ccccccch-----hHH-hhHHHHHH
Q psy11283 97 VNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLT-GAPIVGLNDSG-----GARIQEGV-----ESL-AAYSSVFQ 164 (314)
Q Consensus 97 I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~ds~-----Garl~eg~-----~~l-~~~~~~~~ 164 (314)
++|.-..|.-|.+. ..-+++..-.+.+.++++.+... .+-+|.|.-.+ |+.+.+-. ... ..+.+.+.
T Consensus 10 ~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 88 (257)
T PRK05862 10 TRGRVGLITLNRPK-ALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWE 88 (257)
T ss_pred eeCCEEEEEEcCCc-ccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHH
Confidence 34433333444443 34688999999999999887754 34566665432 34433210 000 11112222
Q ss_pred HHHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE-----------ccHhhhhhh-----------hcccC
Q psy11283 165 RNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI-----------TGPDVIKSV-----------TNEDI 222 (314)
Q Consensus 165 ~~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~-----------~GP~vv~~~-----------~ge~v 222 (314)
.+.....|+|+.|.|.|+|||......||++|+.++ +++.+ .+...+... +|+.+
T Consensus 89 --~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~ 165 (257)
T PRK05862 89 --KVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADT-AKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMM 165 (257)
T ss_pred --HHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCC-CEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCcc
Confidence 134567999999999999999988888999999874 55654 111111111 44445
Q ss_pred CccccCCchhhccccCceeeEecCHH---HHHHHHHHHHhc
Q psy11283 223 SQEELGGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLLGF 260 (314)
Q Consensus 223 ~~~~lGGa~~h~~~~Gv~d~~~~de~---~a~~~ir~~l~~ 260 (314)
+.++ +...|++|.++++++ ++.+.++++...
T Consensus 166 ~a~e-------A~~~Glv~~vv~~~~l~~~a~~~a~~l~~~ 199 (257)
T PRK05862 166 DAAE-------AERAGLVSRVVPADKLLDEALAAATTIASF 199 (257)
T ss_pred CHHH-------HHHcCCCCEeeCHhHHHHHHHHHHHHHHhC
Confidence 4443 246899999997643 455555555443
No 65
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=97.56 E-value=0.0016 Score=60.04 Aligned_cols=147 Identities=10% Similarity=0.079 Sum_probs=86.7
Q ss_pred EEEEcccccCCCcCHHHHHHHHHHHHHHHHhC-CCeEEEecC-----CCcccccch-------hHH-hhHHHHHHHHHHh
Q psy11283 104 IFSQDFTVFGGSLSSVHAEKICKIMDQAMLTG-APIVGLNDS-----GGARIQEGV-------ESL-AAYSSVFQRNILA 169 (314)
Q Consensus 104 v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~ds-----~Garl~eg~-------~~l-~~~~~~~~~~~~~ 169 (314)
|.-|.+. ..-+++..-.+.+.++++.+.+.. +-+|.|.-+ .|..+.+-. ..+ ....+.+.. ...
T Consensus 12 itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~l~ 89 (255)
T PRK06563 12 IGLDRPA-KRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGT-VGR 89 (255)
T ss_pred EEECCcc-cccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHH-HHh
Confidence 3344443 335888999999999998876543 455666543 334432200 000 001111211 134
Q ss_pred cCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEc----c--H-----hhhhh-----------hhcccCCcccc
Q psy11283 170 SGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFIT----G--P-----DVIKS-----------VTNEDISQEEL 227 (314)
Q Consensus 170 ~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~----G--P-----~vv~~-----------~~ge~v~~~~l 227 (314)
...+|+|+.|.|.|+|||......||++|+.++ +++.+. | | ..+.. .+|+.++.+
T Consensus 90 ~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~-- 166 (255)
T PRK06563 90 RLSKPLVVAVQGYCLTLGIELMLAADIVVAADN-TRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQ-- 166 (255)
T ss_pred cCCCCEEEEEcCeeecHHHHHHHhCCEEEecCC-CEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHH--
Confidence 567999999999999999988888999999874 666541 1 1 00111 144444443
Q ss_pred CCchhhccccCceeeEecCHH---HHHHHHHHHHhc
Q psy11283 228 GGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLLGF 260 (314)
Q Consensus 228 GGa~~h~~~~Gv~d~~~~de~---~a~~~ir~~l~~ 260 (314)
+. ...|++|.++++++ ++.+.++++.+.
T Consensus 167 ---eA--~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 197 (255)
T PRK06563 167 ---EA--LRLGLVQEVVPPGEQLERAIELAERIARA 197 (255)
T ss_pred ---HH--HHcCCCcEeeCHHHHHHHHHHHHHHHHhc
Confidence 32 46899999998653 455555555433
No 66
>PRK08139 enoyl-CoA hydratase; Validated
Probab=97.55 E-value=0.0011 Score=61.78 Aligned_cols=145 Identities=15% Similarity=0.149 Sum_probs=84.1
Q ss_pred EEEEcccccCCCcCHHHHHHHHHHHHHHHHhC-CCeEEEec-----CCCcccccc-----hhHHhh----HHHHHHHHHH
Q psy11283 104 IFSQDFTVFGGSLSSVHAEKICKIMDQAMLTG-APIVGLND-----SGGARIQEG-----VESLAA----YSSVFQRNIL 168 (314)
Q Consensus 104 v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~d-----s~Garl~eg-----~~~l~~----~~~~~~~~~~ 168 (314)
|.-|.+. ..-++...-.+.+.++++.+.... +-+|.|.- |+|..+.+- ...... +.+++.. +
T Consensus 24 itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--l 100 (266)
T PRK08139 24 LTLNRPQ-AFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQA--I 100 (266)
T ss_pred EEeCCcc-cccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHH--H
Confidence 3334433 335788888899999888876543 44555543 233443220 000111 1122222 3
Q ss_pred hcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEcc------H-----hhhhh----------hhcccCCcccc
Q psy11283 169 ASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITG------P-----DVIKS----------VTNEDISQEEL 227 (314)
Q Consensus 169 ~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~G------P-----~vv~~----------~~ge~v~~~~l 227 (314)
.....|+|+.|-|+|+|||......||++|+.++ +++.+.- | .+.+. .+|+.++.++
T Consensus 101 ~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl~p~~~~~~l~r~vG~~~A~~l~ltg~~~~a~e- 178 (266)
T PRK08139 101 VALPQPVIARVHGIATAAGCQLVASCDLAVAADT-ARFAVPGVNIGLFCSTPMVALSRNVPRKQAMEMLLTGEFIDAAT- 178 (266)
T ss_pred HhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCC-CEEeCcccCcCCCCCccHHHHHHHhCHHHHHHHHHcCCccCHHH-
Confidence 4567999999999999999988788999999874 6665511 1 11111 1444444443
Q ss_pred CCchhhccccCceeeEecCHH---HHHHHHHHHHh
Q psy11283 228 GGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLLG 259 (314)
Q Consensus 228 GGa~~h~~~~Gv~d~~~~de~---~a~~~ir~~l~ 259 (314)
+...|++|.++++++ ++.+.++++..
T Consensus 179 ------A~~~GLv~~vv~~~~l~~~a~~~a~~la~ 207 (266)
T PRK08139 179 ------AREWGLVNRVVPADALDAAVARLAAVIAA 207 (266)
T ss_pred ------HHHcCCccEeeChhHHHHHHHHHHHHHHh
Confidence 246899999998642 33334444443
No 67
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=97.54 E-value=0.0014 Score=60.61 Aligned_cols=94 Identities=17% Similarity=0.178 Sum_probs=61.4
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEecCC-----Ccccccch----h---HH----hhHHHHHHHHHHhcCCCC
Q psy11283 112 FGGSLSSVHAEKICKIMDQAMLT-GAPIVGLNDSG-----GARIQEGV----E---SL----AAYSSVFQRNILASGVVP 174 (314)
Q Consensus 112 ~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~ds~-----Garl~eg~----~---~l----~~~~~~~~~~~~~~~~VP 174 (314)
.--+++..-...+.++++.+... .+-+|.|.-.+ |..+.+-. . .. ..+.+++.. +....+|
T Consensus 26 ~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~kP 103 (260)
T PRK07827 26 NRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRA--IVELPKP 103 (260)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHH--HHhCCCC
Confidence 34688899999999988887754 35556664333 33332210 0 00 111122222 3456799
Q ss_pred EEEEEeCCCCccccccccCCCEEEEecCceeEEE
Q psy11283 175 QISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI 208 (314)
Q Consensus 175 ~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~ 208 (314)
+|+.|.|+|+|||......||++|+.+ .+.+++
T Consensus 104 vIaav~G~a~GgG~~lalacD~ria~~-~a~f~~ 136 (260)
T PRK07827 104 VIAAIDGHVRAGGFGLVGACDIVVAGP-ESTFAL 136 (260)
T ss_pred EEEEEcCeeecchhhHHHhCCEEEEcC-CCEEeC
Confidence 999999999999998888899999987 466655
No 68
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=97.54 E-value=0.0016 Score=59.98 Aligned_cols=148 Identities=15% Similarity=0.155 Sum_probs=88.3
Q ss_pred EEEEEEcccccCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEecC-----CCcccccchh------HH-hhHHHHHHHHHH
Q psy11283 102 VFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLT-GAPIVGLNDS-----GGARIQEGVE------SL-AAYSSVFQRNIL 168 (314)
Q Consensus 102 v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~ds-----~Garl~eg~~------~l-~~~~~~~~~~~~ 168 (314)
|.++..|.--..-++...-.+.+.++++.+... .+-+|.|.-. +|..+.+-.. .+ ..+.+++.. .
T Consensus 16 v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~--l 93 (251)
T PRK06023 16 VQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIA--L 93 (251)
T ss_pred EEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHH--H
Confidence 444444433344688999999999999887654 3556666433 3444432100 00 111122222 3
Q ss_pred hcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEc----------c-Hhhhhhh-----------hcccCCccc
Q psy11283 169 ASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFIT----------G-PDVIKSV-----------TNEDISQEE 226 (314)
Q Consensus 169 ~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~----------G-P~vv~~~-----------~ge~v~~~~ 226 (314)
....+|+|+.|-|.|+|||......||++|+.+ ++++.+. | ...+... +|+.++.+
T Consensus 94 ~~~~kPvIAav~G~a~GgG~~la~acD~ria~~-~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~- 171 (251)
T PRK06023 94 AEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASP-RSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAE- 171 (251)
T ss_pred HhCCCCEEEEeCCceecHHHHHHHhCCEEEEeC-CCEecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHH-
Confidence 567899999999999999998888899999986 4655441 1 1111111 44444443
Q ss_pred cCCchhhccccCceeeEecCHH---HHHHHHHHHHh
Q psy11283 227 LGGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLLG 259 (314)
Q Consensus 227 lGGa~~h~~~~Gv~d~~~~de~---~a~~~ir~~l~ 259 (314)
+. ...|+++.++++++ ++.+.++++..
T Consensus 172 ----eA--~~~Glv~~vv~~~~l~~~a~~~a~~l~~ 201 (251)
T PRK06023 172 ----AA--QEAGLIWKIVDEEAVEAETLKAAEELAA 201 (251)
T ss_pred ----HH--HHcCCcceeeCHHHHHHHHHHHHHHHHh
Confidence 33 45899999997653 34445555543
No 69
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=97.54 E-value=0.0015 Score=60.21 Aligned_cols=95 Identities=18% Similarity=0.219 Sum_probs=61.3
Q ss_pred CCCcCHHHHHHHHHHHHHHHHhC-CCeEEEecCC-----Ccccccc--------hhHHhhHHHHHHHH--HHhcCCCCEE
Q psy11283 113 GGSLSSVHAEKICKIMDQAMLTG-APIVGLNDSG-----GARIQEG--------VESLAAYSSVFQRN--ILASGVVPQI 176 (314)
Q Consensus 113 gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~ds~-----Garl~eg--------~~~l~~~~~~~~~~--~~~~~~VP~i 176 (314)
.-+++..-.+.+.++++.+.... +-+|.|.-.+ |..+.+- ...+..+.+.+... ......+|+|
T Consensus 23 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 102 (255)
T PRK07260 23 SNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVI 102 (255)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEE
Confidence 35788999999999998877654 4455554333 3333210 01111111122211 2345679999
Q ss_pred EEEeCCCCccccccccCCCEEEEecCceeEEE
Q psy11283 177 SLILGPCAGGAVYSPAITDFTFMVEHSSYLFI 208 (314)
Q Consensus 177 svv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~ 208 (314)
+.|.|.|+|||......||++|+.++ +.+++
T Consensus 103 aav~G~a~GgG~~lala~D~ria~~~-a~f~~ 133 (255)
T PRK07260 103 MCVDGAVAGAAANMAVAADFCIASTK-TKFIQ 133 (255)
T ss_pred EEecCeeehhhHHHHHhCCEEEEeCC-CEEec
Confidence 99999999999988888999999974 56554
No 70
>PLN02600 enoyl-CoA hydratase
Probab=97.53 E-value=0.0021 Score=59.27 Aligned_cols=139 Identities=14% Similarity=0.243 Sum_probs=82.7
Q ss_pred CCcCHHHHHHHHHHHHHHHHhC-CCeEEEecC------CCcccccc----hhHHhhHHHHHHH--HHHhcCCCCEEEEEe
Q psy11283 114 GSLSSVHAEKICKIMDQAMLTG-APIVGLNDS------GGARIQEG----VESLAAYSSVFQR--NILASGVVPQISLIL 180 (314)
Q Consensus 114 Gs~g~~~~~K~~r~~~~A~~~~-lPvV~l~ds------~Garl~eg----~~~l~~~~~~~~~--~~~~~~~VP~isvv~ 180 (314)
-+++..-.+.+.++++.+.+.. +-+|.|.-. +|..+.+- ......+.+.+.. ..+.....|+|+.|.
T Consensus 17 Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 96 (251)
T PLN02600 17 NAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVE 96 (251)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 4788888888888888776553 556666432 23444321 0011111111111 113456799999999
Q ss_pred CCCCccccccccCCCEEEEecCceeEEEc-----------cHhhhhhh-----------hcccCCccccCCchhhccccC
Q psy11283 181 GPCAGGAVYSPAITDFTFMVEHSSYLFIT-----------GPDVIKSV-----------TNEDISQEELGGAKTHTSVSG 238 (314)
Q Consensus 181 G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~-----------GP~vv~~~-----------~ge~v~~~~lGGa~~h~~~~G 238 (314)
|.|+|||......||++|+.++ +++++. +...+... +|+.++.+ +. ...|
T Consensus 97 G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~-----eA--~~~G 168 (251)
T PLN02600 97 GAALGGGLELALSCDLRICGEE-AVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAR-----EA--ASMG 168 (251)
T ss_pred CeecchhHHHHHhCCEEEeeCC-CEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccCHH-----HH--HHcC
Confidence 9999999988888999999975 666551 11112111 44444443 33 4589
Q ss_pred ceeeEecCHH---HHHHHHHHHHhc
Q psy11283 239 VAHNAFSNDI---DAIQNVRHLLGF 260 (314)
Q Consensus 239 v~d~~~~de~---~a~~~ir~~l~~ 260 (314)
+++.++++++ ++++.++++...
T Consensus 169 lv~~vv~~~~~~~~a~~~a~~la~~ 193 (251)
T PLN02600 169 LVNYCVPAGEAYEKALELAQEINQK 193 (251)
T ss_pred CCcEeeChhHHHHHHHHHHHHHHhC
Confidence 9999997653 445555555443
No 71
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=97.52 E-value=0.002 Score=58.49 Aligned_cols=92 Identities=18% Similarity=0.183 Sum_probs=61.4
Q ss_pred CCcCHHHHHHHHHHHHHHHHhCCCeEEEecCC-----Ccccccc---hhHHhh----HHHHHHHHHHhcCCCCEEEEEeC
Q psy11283 114 GSLSSVHAEKICKIMDQAMLTGAPIVGLNDSG-----GARIQEG---VESLAA----YSSVFQRNILASGVVPQISLILG 181 (314)
Q Consensus 114 Gs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~-----Garl~eg---~~~l~~----~~~~~~~~~~~~~~VP~isvv~G 181 (314)
-+++......+.++++.+. ...-+|.+.-.+ |+.+.+- ...... +.+++.. ...-..|+|+.|.|
T Consensus 24 Nal~~~~~~~l~~~l~~~~-~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~--l~~~~kPvIAav~G 100 (229)
T PRK06213 24 NALSPAMIDALNAALDQAE-DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARR--LLSHPKPVIVACTG 100 (229)
T ss_pred CCCCHHHHHHHHHHHHHhh-ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHH--HHcCCCCEEEEEcC
Confidence 5889999999999999887 455667665543 3333210 000001 1112221 34567999999999
Q ss_pred CCCccccccccCCCEEEEecCceeEEE
Q psy11283 182 PCAGGAVYSPAITDFTFMVEHSSYLFI 208 (314)
Q Consensus 182 ~~~Gg~a~~~~~~D~vi~~~~~a~i~~ 208 (314)
.|+|||......||++|+.++.+++.+
T Consensus 101 ~a~GgG~~lal~~D~rva~~~~a~f~~ 127 (229)
T PRK06213 101 HAIAKGAFLLLSADYRIGVHGPFKIGL 127 (229)
T ss_pred eeeHHHHHHHHhCCeeeEecCCcEEEC
Confidence 999999888888999999985355544
No 72
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=97.51 E-value=0.0016 Score=60.62 Aligned_cols=145 Identities=17% Similarity=0.167 Sum_probs=84.2
Q ss_pred EEEEcccccCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEec-----CCCcccccch------hHHhh----HHHHHHHHH
Q psy11283 104 IFSQDFTVFGGSLSSVHAEKICKIMDQAMLT-GAPIVGLND-----SGGARIQEGV------ESLAA----YSSVFQRNI 167 (314)
Q Consensus 104 v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~d-----s~Garl~eg~------~~l~~----~~~~~~~~~ 167 (314)
|.-|++. .-.+++..-...+..+++.+... .+-+|.|.- |.|..+.+-. ..... ..+++..
T Consensus 25 itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-- 101 (268)
T PRK07327 25 IVLNGPG-ALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYN-- 101 (268)
T ss_pred EEEcCCC-ccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHH--
Confidence 3344443 23578888888898888887654 344565543 2334442210 00001 1112211
Q ss_pred HhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE-------c---c-Hhhhhhh-----------hcccCCcc
Q psy11283 168 LASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI-------T---G-PDVIKSV-----------TNEDISQE 225 (314)
Q Consensus 168 ~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~-------~---G-P~vv~~~-----------~ge~v~~~ 225 (314)
.....+|+|+.|.|.|+|||......||++|+.++ +++.+ . | ...+... +|+.++.+
T Consensus 102 l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~ 180 (268)
T PRK07327 102 VINCDKPIVSAIHGPAVGAGLVAALLADISIAAKD-ARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGE 180 (268)
T ss_pred HHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCC-CEEeCcccccCCCCCcchhhHHHHHhCHHHHHHHHHcCCccCHH
Confidence 34567999999999999999988888999999874 66654 1 0 0011111 44455544
Q ss_pred ccCCchhhccccCceeeEecCHH---HHHHHHHHHHh
Q psy11283 226 ELGGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLLG 259 (314)
Q Consensus 226 ~lGGa~~h~~~~Gv~d~~~~de~---~a~~~ir~~l~ 259 (314)
+ . ...|+++.++++++ ++.+.++++.+
T Consensus 181 e-----A--~~~Glv~~vv~~~~l~~~a~~~a~~la~ 210 (268)
T PRK07327 181 E-----A--ERIGLVSLAVDDDELLPKALEVAERLAA 210 (268)
T ss_pred H-----H--HHcCCcceecCHHHHHHHHHHHHHHHHc
Confidence 3 2 35899999987643 34444444443
No 73
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=97.51 E-value=0.0015 Score=60.30 Aligned_cols=137 Identities=18% Similarity=0.255 Sum_probs=83.5
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEec-----CCCcccccch------hH-HhhHHHHHHHHHHhcCCCCEEEE
Q psy11283 112 FGGSLSSVHAEKICKIMDQAMLT-GAPIVGLND-----SGGARIQEGV------ES-LAAYSSVFQRNILASGVVPQISL 178 (314)
Q Consensus 112 ~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~d-----s~Garl~eg~------~~-l~~~~~~~~~~~~~~~~VP~isv 178 (314)
.-.+++....+.+..+++.+.+. .+-+|.|.- |.|+.+.+-. .. ...+.+++.. ......|+|+.
T Consensus 25 ~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~--l~~~~kp~Iaa 102 (259)
T PRK06688 25 KKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRA--IAALPKPVVAA 102 (259)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHH--HHcCCCCEEEE
Confidence 34688999999999999888764 466676654 3344432200 00 1111222222 34567999999
Q ss_pred EeCCCCccccccccCCCEEEEecCceeEEEc-----------cHhhhhh-----------hhcccCCccccCCchhhccc
Q psy11283 179 ILGPCAGGAVYSPAITDFTFMVEHSSYLFIT-----------GPDVIKS-----------VTNEDISQEELGGAKTHTSV 236 (314)
Q Consensus 179 v~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~-----------GP~vv~~-----------~~ge~v~~~~lGGa~~h~~~ 236 (314)
|.|.|+|||......||++|+.+ ++++++. +...+.. .+|+.++.++ . ..
T Consensus 103 v~G~a~GgG~~lal~cD~ria~~-~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~e-----A--~~ 174 (259)
T PRK06688 103 VNGPAVGVGVSLALACDLVYASE-SAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEE-----A--LR 174 (259)
T ss_pred ECCeeecHHHHHHHhCCEEEecC-CCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHHHHhCCccCHHH-----H--HH
Confidence 99999999998888899999987 4666551 1111111 1344444443 2 45
Q ss_pred cCceeeEecCHHHHHHHHHHHHh
Q psy11283 237 SGVAHNAFSNDIDAIQNVRHLLG 259 (314)
Q Consensus 237 ~Gv~d~~~~de~~a~~~ir~~l~ 259 (314)
.|++|.+++++ +..+.++++..
T Consensus 175 ~Glv~~v~~~~-~l~~~a~~~a~ 196 (259)
T PRK06688 175 IGLVNRVVPAA-ELDAEADAQAA 196 (259)
T ss_pred cCCcceecCHH-HHHHHHHHHHH
Confidence 89999999754 33444444443
No 74
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=97.51 E-value=0.0017 Score=60.32 Aligned_cols=140 Identities=14% Similarity=0.227 Sum_probs=79.7
Q ss_pred CCcCHHHHHHHHHHHHHHHHhC-CCeEEEec-----CCCcccccch--------hHH---hhHHHHHHHHHHhcCCCCEE
Q psy11283 114 GSLSSVHAEKICKIMDQAMLTG-APIVGLND-----SGGARIQEGV--------ESL---AAYSSVFQRNILASGVVPQI 176 (314)
Q Consensus 114 Gs~g~~~~~K~~r~~~~A~~~~-lPvV~l~d-----s~Garl~eg~--------~~l---~~~~~~~~~~~~~~~~VP~i 176 (314)
-+++..-...+.++++.+.... +=+|.|.- |+|..+.+-. ..+ ..+.+++.. +.....|+|
T Consensus 28 Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~kPvI 105 (265)
T PRK05674 28 NAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYN--LYRLKIPTL 105 (265)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHH--HHcCCCCEE
Confidence 4788888888988888876554 34555543 2334332100 001 011122222 345679999
Q ss_pred EEEeCCCCccccccccCCCEEEEecCceeEEE-------c---cHhhhhhhhccc------CCccccCCchhhccccCce
Q psy11283 177 SLILGPCAGGAVYSPAITDFTFMVEHSSYLFI-------T---GPDVIKSVTNED------ISQEELGGAKTHTSVSGVA 240 (314)
Q Consensus 177 svv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~-------~---GP~vv~~~~ge~------v~~~~lGGa~~h~~~~Gv~ 240 (314)
+.|.|.|+|||......||++|+.++ +.+++ . |...+-..+|.. ++.+.+.+.+. ...|++
T Consensus 106 aaV~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gi~p~~~~~~l~~~vG~~~a~~l~ltg~~~~a~eA--~~~Glv 182 (265)
T PRK05674 106 AVVQGAAFGGALGLISCCDMAIGADD-AQFCLSEVRIGLAPAVISPFVVKAIGERAARRYALTAERFDGRRA--RELGLL 182 (265)
T ss_pred EEEcCEEEechhhHhhhcCEEEEeCC-CEEeCcccccCCCcchhHHHHHHHhCHHHHHHHHHhCcccCHHHH--HHCCCc
Confidence 99999999999988888999999874 56554 1 111111111211 12233333333 358999
Q ss_pred eeEecCHHHHHHHHHHHHh
Q psy11283 241 HNAFSNDIDAIQNVRHLLG 259 (314)
Q Consensus 241 d~~~~de~~a~~~ir~~l~ 259 (314)
+.+++++ +..+.+.++..
T Consensus 183 ~~vv~~~-~l~~~a~~~a~ 200 (265)
T PRK05674 183 AESYPAA-ELEAQVEAWIA 200 (265)
T ss_pred ceecCHH-HHHHHHHHHHH
Confidence 9999854 33344444443
No 75
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=97.51 E-value=0.0017 Score=60.16 Aligned_cols=92 Identities=14% Similarity=0.184 Sum_probs=60.8
Q ss_pred CCcCHHHHHHHHHHHHHHHHh-CCCeEEEecCC-----Ccccccch--------hHH---hhHHHHHHHHHHhcCCCCEE
Q psy11283 114 GSLSSVHAEKICKIMDQAMLT-GAPIVGLNDSG-----GARIQEGV--------ESL---AAYSSVFQRNILASGVVPQI 176 (314)
Q Consensus 114 Gs~g~~~~~K~~r~~~~A~~~-~lPvV~l~ds~-----Garl~eg~--------~~l---~~~~~~~~~~~~~~~~VP~i 176 (314)
-+++..-.+.+.++++.+... .+-+|.|.-.+ |..+.+-. ... ..+.+++.. +.....|+|
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~kPvI 103 (262)
T PRK05995 26 NAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRA--IYRCPKPVI 103 (262)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHH--HHcCCCCEE
Confidence 488899999999999888754 45566665433 33332200 000 011122222 345679999
Q ss_pred EEEeCCCCccccccccCCCEEEEecCceeEEE
Q psy11283 177 SLILGPCAGGAVYSPAITDFTFMVEHSSYLFI 208 (314)
Q Consensus 177 svv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~ 208 (314)
+.|-|.|+|||......||++|+.++ +++++
T Consensus 104 aav~G~a~GgG~~lalacD~ria~~~-a~f~~ 134 (262)
T PRK05995 104 ARVHGDAYAGGMGLVAACDIAVAADH-AVFCL 134 (262)
T ss_pred EEECCEEEhhHHHHHHhCCEEEeeCC-CEEeC
Confidence 99999999999988888999999874 66655
No 76
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=97.51 E-value=0.0015 Score=61.11 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=66.9
Q ss_pred ECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEec-----CCCcccccch--------hHHhhHHHH
Q psy11283 97 VNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLT-GAPIVGLND-----SGGARIQEGV--------ESLAAYSSV 162 (314)
Q Consensus 97 I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~d-----s~Garl~eg~--------~~l~~~~~~ 162 (314)
++|.-..|.-|.+. ..-+++..-...+..+++.+.+. .+-+|.|.- |.|..+.+-. ..+..+.+.
T Consensus 23 ~~~~v~~itlnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~ 101 (277)
T PRK08258 23 VDDGVATITLNRPE-RKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRM 101 (277)
T ss_pred EECCEEEEEeCCcc-cccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHH
Confidence 44433344444433 44678888888888888887643 455566643 3344443210 011111111
Q ss_pred HHH--HHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE
Q psy11283 163 FQR--NILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI 208 (314)
Q Consensus 163 ~~~--~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~ 208 (314)
+.. .......+|+|++|.|.|+|||......||++|+.++ +++++
T Consensus 102 ~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~ 148 (277)
T PRK08258 102 TGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPS-AKTAF 148 (277)
T ss_pred HHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCC-CEEec
Confidence 111 1134567999999999999999988888999999874 55554
No 77
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=97.48 E-value=0.0022 Score=59.34 Aligned_cols=95 Identities=23% Similarity=0.278 Sum_probs=60.4
Q ss_pred CCCcCHHHHHHHHHHHHHHHHhC-CCeEEEecCCC------cccccch----hHHhhHHHHHHH--HHHhcCCCCEEEEE
Q psy11283 113 GGSLSSVHAEKICKIMDQAMLTG-APIVGLNDSGG------ARIQEGV----ESLAAYSSVFQR--NILASGVVPQISLI 179 (314)
Q Consensus 113 gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~ds~G------arl~eg~----~~l~~~~~~~~~--~~~~~~~VP~isvv 179 (314)
.-+++..-...+.++++.+.+.. +-+|.|.-.++ ..+.+-. .......+.+.. ..+....+|+|+.|
T Consensus 25 ~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 104 (260)
T PRK07657 25 ANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAI 104 (260)
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 35788999899999998876544 44555544332 2332210 011111111111 11345679999999
Q ss_pred eCCCCccccccccCCCEEEEecCceeEEE
Q psy11283 180 LGPCAGGAVYSPAITDFTFMVEHSSYLFI 208 (314)
Q Consensus 180 ~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~ 208 (314)
.|.|+|||......||++|+.++ +++.+
T Consensus 105 ~G~a~GgG~~lal~cD~~ia~~~-a~f~~ 132 (260)
T PRK07657 105 NGIALGGGLELALACDFRIAAES-ASLGL 132 (260)
T ss_pred cCEeechHHHHHHhCCEEEeeCC-CEEcC
Confidence 99999999988888999999874 55654
No 78
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=97.46 E-value=0.0019 Score=59.82 Aligned_cols=139 Identities=19% Similarity=0.205 Sum_probs=81.1
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHhC-CCeEEEecC------CCcccccc----hhHHhhHHHHHHH--HHHhcCCCCEEEE
Q psy11283 112 FGGSLSSVHAEKICKIMDQAMLTG-APIVGLNDS------GGARIQEG----VESLAAYSSVFQR--NILASGVVPQISL 178 (314)
Q Consensus 112 ~gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~ds------~Garl~eg----~~~l~~~~~~~~~--~~~~~~~VP~isv 178 (314)
..-+++..-...+..+++.+.... +-+|.|.-+ +|..+.+- ......+.+.+.. .......+|+|+.
T Consensus 27 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 106 (256)
T PRK06143 27 SLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIAR 106 (256)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 345888999999999998887543 445555432 23333220 0011111111111 1134567999999
Q ss_pred EeCCCCccccccccCCCEEEEecCceeEEEcc-----H-----hhhhh-----------hhcccCCccccCCchhhcccc
Q psy11283 179 ILGPCAGGAVYSPAITDFTFMVEHSSYLFITG-----P-----DVIKS-----------VTNEDISQEELGGAKTHTSVS 237 (314)
Q Consensus 179 v~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~G-----P-----~vv~~-----------~~ge~v~~~~lGGa~~h~~~~ 237 (314)
|-|.|+|||......||++|+.++ +++.+.- | ..+.. .+|+.++.++ +...
T Consensus 107 v~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~G~p~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~e-------A~~~ 178 (256)
T PRK06143 107 IPGWCLGGGLELAAACDLRIAAHD-AQFGMPEVRVGIPSVIHAALLPRLIGWARTRWLLLTGETIDAAQ-------ALAW 178 (256)
T ss_pred ECCEEeehhHHHHHhCCEEEecCC-CEEeCCccccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHH-------HHHC
Confidence 999999999988888999999874 5565410 1 11111 2444444443 2468
Q ss_pred CceeeEecCHH---HHHHHHHHHH
Q psy11283 238 GVAHNAFSNDI---DAIQNVRHLL 258 (314)
Q Consensus 238 Gv~d~~~~de~---~a~~~ir~~l 258 (314)
|++|.++++++ ++.+.++++.
T Consensus 179 Glv~~vv~~~~l~~~a~~~a~~la 202 (256)
T PRK06143 179 GLVDRVVPLAELDAAVERLAASLA 202 (256)
T ss_pred CCcCeecCHHHHHHHHHHHHHHHH
Confidence 99999997642 3334444444
No 79
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=97.46 E-value=0.0027 Score=58.68 Aligned_cols=146 Identities=13% Similarity=0.188 Sum_probs=85.1
Q ss_pred EEEEcccccCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEecCC------Ccccccchh------HHh-hHHHHHHHHHHh
Q psy11283 104 IFSQDFTVFGGSLSSVHAEKICKIMDQAMLT-GAPIVGLNDSG------GARIQEGVE------SLA-AYSSVFQRNILA 169 (314)
Q Consensus 104 v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~ds~------Garl~eg~~------~l~-~~~~~~~~~~~~ 169 (314)
|.-|++. .--++...-.+.+.++++.+... .+-+|.|.-++ |..+.+-.. .+. .+..++.. ..
T Consensus 15 itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~--l~ 91 (256)
T TIGR03210 15 IMINRPA-KMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSA--IR 91 (256)
T ss_pred EEEcCCc-cccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHH--HH
Confidence 3344443 33578888888898888887644 34455554322 333332100 000 01112222 34
Q ss_pred cCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEcc-------H----hhhhhh-----------hcccCCcccc
Q psy11283 170 SGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITG-------P----DVIKSV-----------TNEDISQEEL 227 (314)
Q Consensus 170 ~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~G-------P----~vv~~~-----------~ge~v~~~~l 227 (314)
....|+|+.|-|.|+|||......||++|+.+ ++++.+.- | ..+... +|+.++.+
T Consensus 92 ~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~-~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~a~-- 168 (256)
T TIGR03210 92 DVPKPVIARVQGYAIGGGNVLVTICDLTIASE-KAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQ-- 168 (256)
T ss_pred hCCCCEEEEECCEEehhhHHHHHhCCEEEEeC-CCEEecccccccccCCccHHHHHHHHhCHHHHHHHHHhCCCcCHH--
Confidence 56799999999999999998888899999987 45665511 1 111111 34444443
Q ss_pred CCchhhccccCceeeEecCHH---HHHHHHHHHHhc
Q psy11283 228 GGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLLGF 260 (314)
Q Consensus 228 GGa~~h~~~~Gv~d~~~~de~---~a~~~ir~~l~~ 260 (314)
+. ...|+++.++++++ ++.+.++++.+.
T Consensus 169 ---eA--~~~Glv~~vv~~~~l~~~a~~~a~~ia~~ 199 (256)
T TIGR03210 169 ---EA--LAMGLVNAVVPHDQLDAEVQKWCDEIVEK 199 (256)
T ss_pred ---HH--HHcCCceeeeCHHHHHHHHHHHHHHHHhC
Confidence 33 35899999997653 344455555543
No 80
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=97.43 E-value=0.0011 Score=61.11 Aligned_cols=93 Identities=13% Similarity=0.142 Sum_probs=61.5
Q ss_pred CCCcCHHHHHHHHHHHHHHHHh-CCCeEEEecC-----CCcccccchh--------HHhhHHHHHHHHHHhcCCCCEEEE
Q psy11283 113 GGSLSSVHAEKICKIMDQAMLT-GAPIVGLNDS-----GGARIQEGVE--------SLAAYSSVFQRNILASGVVPQISL 178 (314)
Q Consensus 113 gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~ds-----~Garl~eg~~--------~l~~~~~~~~~~~~~~~~VP~isv 178 (314)
--++...-.+.+.++++.+.+. .+-+|.|.-+ .|+.+.+-.. .+..+.+.+.. ......|+|+.
T Consensus 24 ~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~kPvIaa 101 (249)
T PRK05870 24 RNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLA--VASCPLPTIAA 101 (249)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHH--HHhCCCCEEEE
Confidence 3578899999999999888754 4556666543 3444432110 01111122221 34567999999
Q ss_pred EeCCCCccccccccCCCEEEEecCceeEEE
Q psy11283 179 ILGPCAGGAVYSPAITDFTFMVEHSSYLFI 208 (314)
Q Consensus 179 v~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~ 208 (314)
|.|.|+|||......||++|+.++ +++.+
T Consensus 102 v~G~a~GgG~~lal~cD~ria~~~-a~f~~ 130 (249)
T PRK05870 102 VNGAAVGAGLNLALAADVRIAGPK-ALFDA 130 (249)
T ss_pred ECCEeEchhHHHHHhCCEEEEcCC-CEEeC
Confidence 999999999988889999999874 55543
No 81
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=97.42 E-value=0.0028 Score=59.00 Aligned_cols=147 Identities=24% Similarity=0.251 Sum_probs=85.8
Q ss_pred EEEEcccccCCCcCHHHHHHHHHHHHHHHHhCC-CeEEEecCC------Ccccccch------hHHhhHHHHHHH--HHH
Q psy11283 104 IFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGA-PIVGLNDSG------GARIQEGV------ESLAAYSSVFQR--NIL 168 (314)
Q Consensus 104 v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~l-PvV~l~ds~------Garl~eg~------~~l~~~~~~~~~--~~~ 168 (314)
|.-|++. .-.+++..-...+..+++.+.+..- =+|.|.-.+ |..+.+-. .....+.+.+.. ...
T Consensus 24 itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (269)
T PRK06127 24 ITFNNPA-RHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAAL 102 (269)
T ss_pred EEecCCC-ccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHH
Confidence 3334433 4468999999999999998877643 344443322 23332100 000111111111 113
Q ss_pred hcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEc-----------cHhhhhhh-----------hcccCCccc
Q psy11283 169 ASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFIT-----------GPDVIKSV-----------TNEDISQEE 226 (314)
Q Consensus 169 ~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~-----------GP~vv~~~-----------~ge~v~~~~ 226 (314)
.....|+|+.|.|.|+|||......||++|+.++ +++.+. +...+... +|+.++.++
T Consensus 103 ~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e 181 (269)
T PRK06127 103 ADYAKPTIACIRGYCIGGGMGIALACDIRIAAED-SRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAE 181 (269)
T ss_pred HhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCC-CEeeCchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH
Confidence 4567999999999999999988888999999974 666551 11111111 444555443
Q ss_pred cCCchhhccccCceeeEecCHHHHHHHHHHHHhc
Q psy11283 227 LGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGF 260 (314)
Q Consensus 227 lGGa~~h~~~~Gv~d~~~~de~~a~~~ir~~l~~ 260 (314)
. ...|+++.+++++ +..+.++++...
T Consensus 182 -----A--~~~Glv~~vv~~~-~l~~~a~~~a~~ 207 (269)
T PRK06127 182 -----A--LRIGLVHRVTAAD-DLETALADYAAT 207 (269)
T ss_pred -----H--HHcCCCCEeeCHH-HHHHHHHHHHHH
Confidence 2 4689999999754 344444444443
No 82
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=97.41 E-value=0.0022 Score=59.04 Aligned_cols=144 Identities=18% Similarity=0.241 Sum_probs=85.8
Q ss_pred EEEEcccccCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEec-----CCCcccccch-----hHHh----hHHHHHHHHHH
Q psy11283 104 IFSQDFTVFGGSLSSVHAEKICKIMDQAMLT-GAPIVGLND-----SGGARIQEGV-----ESLA----AYSSVFQRNIL 168 (314)
Q Consensus 104 v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~d-----s~Garl~eg~-----~~l~----~~~~~~~~~~~ 168 (314)
|.-|.+. . -++...-...+.++++.+.+. .+-+|.|.- |.|+.+.+-. .... .+.+++.. .
T Consensus 15 itlnrp~-~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--i 90 (249)
T PRK07938 15 VTVDYPP-V-NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRA--V 90 (249)
T ss_pred EEECCCC-c-ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHH--H
Confidence 3334443 3 788999999999999988655 344555543 2344443210 0100 11122222 3
Q ss_pred hcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE-------cc----------Hhhhhh--hhcccCCccccCC
Q psy11283 169 ASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI-------TG----------PDVIKS--VTNEDISQEELGG 229 (314)
Q Consensus 169 ~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~-------~G----------P~vv~~--~~ge~v~~~~lGG 229 (314)
....+|+|+.|.|.|+|||......||++|+.++ +++++ .| +..... .+|+.++.++
T Consensus 91 ~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~-a~f~~pe~~~G~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~e--- 166 (249)
T PRK07938 91 YECAVPVIAAVHGFCLGGGIGLVGNADVIVASDD-ATFGLPEVDRGALGAATHLQRLVPQHLMRALFFTAATITAAE--- 166 (249)
T ss_pred HhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCC-CEeeCccceecCchhHHHHHHhcCHHHHHHHHHhCCcCCHHH---
Confidence 4567999999999999999988888999999874 55544 11 111111 1444444443
Q ss_pred chhhccccCceeeEecCHH---HHHHHHHHHHh
Q psy11283 230 AKTHTSVSGVAHNAFSNDI---DAIQNVRHLLG 259 (314)
Q Consensus 230 a~~h~~~~Gv~d~~~~de~---~a~~~ir~~l~ 259 (314)
+...|+++.++++++ ++.+.++++..
T Consensus 167 ----A~~~Glv~~vv~~~~l~~~a~~~a~~la~ 195 (249)
T PRK07938 167 ----LHHFGSVEEVVPRDQLDEAALEVARKIAA 195 (249)
T ss_pred ----HHHCCCccEEeCHHHHHHHHHHHHHHHHh
Confidence 246899999998542 44445555543
No 83
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=97.41 E-value=0.0025 Score=59.60 Aligned_cols=153 Identities=14% Similarity=0.178 Sum_probs=85.5
Q ss_pred EEEEcccccCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEec-----CCCcccccch----------hH-HhhHHHHHHH-
Q psy11283 104 IFSQDFTVFGGSLSSVHAEKICKIMDQAMLT-GAPIVGLND-----SGGARIQEGV----------ES-LAAYSSVFQR- 165 (314)
Q Consensus 104 v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~d-----s~Garl~eg~----------~~-l~~~~~~~~~- 165 (314)
|.-|.+. .--+++..-.+.+.++++.+.+. .+-+|.|.- |.|+.+.+-. .. .....+.+..
T Consensus 23 itlnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (276)
T PRK05864 23 ITLNRPE-RMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDV 101 (276)
T ss_pred EEecCCc-cccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHHH
Confidence 3444443 33588898888899888887654 355666643 3344443210 00 0001111111
Q ss_pred -HHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE-------c----cH-hhhhhhhccc------CCccc
Q psy11283 166 -NILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI-------T----GP-DVIKSVTNED------ISQEE 226 (314)
Q Consensus 166 -~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~-------~----GP-~vv~~~~ge~------v~~~~ 226 (314)
.......+|+|+.|.|.|+|||......||++|+.++ +++.+ . |. ..+....|.. ++.+.
T Consensus 102 ~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~l~l~g~~ 180 (276)
T PRK05864 102 ILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSS-AYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRD 180 (276)
T ss_pred HHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCC-CEecCcccccCCCCCCcchheehHhhhCHHHHHHHHHcCCc
Confidence 1134568999999999999999988888999999974 54432 1 11 1111111210 12222
Q ss_pred cCCchhhccccCceeeEecCHH---HHHHHHHHHHhc
Q psy11283 227 LGGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLLGF 260 (314)
Q Consensus 227 lGGa~~h~~~~Gv~d~~~~de~---~a~~~ir~~l~~ 260 (314)
+.+.+. ...|+++.++++++ ++.+.++++...
T Consensus 181 ~~a~eA--~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 215 (276)
T PRK05864 181 VDAEEA--ERIGLVSRQVPDEQLLDTCYAIAARMAGF 215 (276)
T ss_pred cCHHHH--HHcCCcceeeCHHHHHHHHHHHHHHHHhC
Confidence 333332 46899999997653 344555555544
No 84
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.41 E-value=0.00022 Score=67.36 Aligned_cols=28 Identities=14% Similarity=0.219 Sum_probs=25.8
Q ss_pred CCCceeEEEEEECCeEEEEEeeCCccCC
Q psy11283 287 YAKNIIVGFARINGHSVGIVANQPKVAA 314 (314)
Q Consensus 287 ~a~~vvtg~arl~G~~VGvvAn~p~~~~ 314 (314)
.+.+||||++||+|+||+|+||||++++
T Consensus 107 ~~d~vVtG~g~I~G~~V~v~a~D~~f~g 134 (292)
T PRK05654 107 LKDAVVTGKGTIEGMPVVLAVMDFSFMG 134 (292)
T ss_pred CCCcEEEEEEEECCEEEEEEEEeccccc
Confidence 4589999999999999999999999875
No 85
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=97.41 E-value=0.0028 Score=58.76 Aligned_cols=158 Identities=18% Similarity=0.192 Sum_probs=88.5
Q ss_pred ECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhC-CCeEEEecC------CCcccccch-----hHHhh----HH
Q psy11283 97 VNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTG-APIVGLNDS------GGARIQEGV-----ESLAA----YS 160 (314)
Q Consensus 97 I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~ds------~Garl~eg~-----~~l~~----~~ 160 (314)
++|.-..|.-|++. .--+++..-.+.+..+++.+.+.. +-+|.|.-+ .|..+.+-. ..... +.
T Consensus 14 ~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 92 (262)
T PRK06144 14 VRGGIARITFNRPA-ARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRID 92 (262)
T ss_pred eeCCEEEEEecCCc-ccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHH
Confidence 44533334444443 335888988999999988887653 455655432 233433210 00001 11
Q ss_pred HHHHHHHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEc-----c--H-----hhhhhhhccc------C
Q psy11283 161 SVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFIT-----G--P-----DVIKSVTNED------I 222 (314)
Q Consensus 161 ~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~-----G--P-----~vv~~~~ge~------v 222 (314)
+++.. ......|+|+.|.|.|+|||......||++|+.++ +.+++. | | ..+....|.. +
T Consensus 93 ~~~~~--l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~l 169 (262)
T PRK06144 93 RVLGA--LEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPS-ARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLF 169 (262)
T ss_pred HHHHH--HHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCC-CEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHHH
Confidence 22222 34567999999999999999988888999999874 666542 1 1 0111111110 1
Q ss_pred CccccCCchhhccccCceeeEecCHH---HHHHHHHHHHhc
Q psy11283 223 SQEELGGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLLGF 260 (314)
Q Consensus 223 ~~~~lGGa~~h~~~~Gv~d~~~~de~---~a~~~ir~~l~~ 260 (314)
+.+.+.+.+ +...|++|.++++++ ++.+.++++...
T Consensus 170 ~g~~~~a~e--A~~~Glv~~vv~~~~l~~~a~~~a~~i~~~ 208 (262)
T PRK06144 170 TARLLEAEE--ALAAGLVNEVVEDAALDARADALAELLAAH 208 (262)
T ss_pred cCCCcCHHH--HHHcCCcCeecCHHHHHHHHHHHHHHHHhC
Confidence 222333333 246899999998642 344455555443
No 86
>PRK08321 naphthoate synthase; Validated
Probab=97.40 E-value=0.0026 Score=60.39 Aligned_cols=159 Identities=14% Similarity=0.159 Sum_probs=88.2
Q ss_pred CCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEec------------CCCcccccch-----------
Q psy11283 98 NGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLT-GAPIVGLND------------SGGARIQEGV----------- 153 (314)
Q Consensus 98 ~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~d------------s~Garl~eg~----------- 153 (314)
+|.-+.|.-|++. .--+++..-..-+.++++.+... .+-+|.|.- |.|..+.+-.
T Consensus 32 ~~~va~itlnrP~-~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~ 110 (302)
T PRK08321 32 DQGTVRIAFDRPE-VRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDE 110 (302)
T ss_pred CCCEEEEEeCCcc-cccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhcccccccccccc
Confidence 4433344445543 34588999999999999888654 455666642 3444443200
Q ss_pred -h--HHhhHHHH-HHH--HHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEc----c--H-----hhhhh
Q psy11283 154 -E--SLAAYSSV-FQR--NILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFIT----G--P-----DVIKS 216 (314)
Q Consensus 154 -~--~l~~~~~~-~~~--~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~----G--P-----~vv~~ 216 (314)
. ........ +.. ..+.....|+|+.|-|.|+|||......||++|+.++.+++.+. | | ..+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r 190 (302)
T PRK08321 111 ADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLAR 190 (302)
T ss_pred ccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHH
Confidence 0 00001111 011 11345679999999999999999888889999998434666552 1 1 11222
Q ss_pred hhccc------CCccccCCchhhccccCceeeEecCHH---HHHHHHHHHHh
Q psy11283 217 VTNED------ISQEELGGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLLG 259 (314)
Q Consensus 217 ~~ge~------v~~~~lGGa~~h~~~~Gv~d~~~~de~---~a~~~ir~~l~ 259 (314)
..|.. ++.+.+.+.+. ...|+++.++++++ ++.+.++++..
T Consensus 191 ~vG~~~A~~l~ltG~~~~A~eA--~~~GLv~~vv~~~~l~~~a~~~a~~la~ 240 (302)
T PRK08321 191 QVGQKFAREIFFLGRTYSAEEA--HDMGAVNAVVPHAELETEALEWAREING 240 (302)
T ss_pred HhCHHHHHHHHHcCCccCHHHH--HHCCCceEeeCHHHHHHHHHHHHHHHHh
Confidence 11211 12223333332 46899999998642 34444444443
No 87
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=97.40 E-value=0.0033 Score=58.55 Aligned_cols=153 Identities=18% Similarity=0.238 Sum_probs=88.5
Q ss_pred ECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhC-CCeEEEecC-----CCcccccchh-------------HHh
Q psy11283 97 VNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTG-APIVGLNDS-----GGARIQEGVE-------------SLA 157 (314)
Q Consensus 97 I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~ds-----~Garl~eg~~-------------~l~ 157 (314)
+++..|+.+-.|.--..-+++....+.+.++++.+.+.. +=+|.|.-+ +|+.+.+-.. .+.
T Consensus 11 ~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 90 (272)
T PRK06210 11 VADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFV 90 (272)
T ss_pred ECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccccccchhhh
Confidence 444234444333322446888999999999998876543 445555432 2333322000 000
Q ss_pred -----hHHHHHHHHHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEc--------------------cHh
Q psy11283 158 -----AYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFIT--------------------GPD 212 (314)
Q Consensus 158 -----~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~--------------------GP~ 212 (314)
.+-+.+. ......+|+|+.|.|.|+|||......||++|+.++ +++.+. |+.
T Consensus 91 ~~~~~~~~~~~~--~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~ 167 (272)
T PRK06210 91 GNRRPDYQTRYH--FLTALRKPVIAAINGACAGIGLTHALMCDVRFAADG-AKFTTAFARRGLIAEHGISWILPRLVGHA 167 (272)
T ss_pred hhhhhhHHHHHH--HHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCC-CEEechHHhcCCCCCCchhhhhHhhhCHH
Confidence 0001111 234678999999999999999988889999999974 666431 111
Q ss_pred hhhh--hhcccCCccccCCchhhccccCceeeEecCHH---HHHHHHHHHHh
Q psy11283 213 VIKS--VTNEDISQEELGGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLLG 259 (314)
Q Consensus 213 vv~~--~~ge~v~~~~lGGa~~h~~~~Gv~d~~~~de~---~a~~~ir~~l~ 259 (314)
.... .+|+.++.++ +...|++|.++++++ ++.+.++++..
T Consensus 168 ~a~~l~ltg~~~~a~e-------A~~~Glv~~vv~~~~l~~~a~~~a~~i~~ 212 (272)
T PRK06210 168 NALDLLLSARTFYAEE-------ALRLGLVNRVVPPDELMERTLAYAEDLAR 212 (272)
T ss_pred HHHHHHHcCCccCHHH-------HHHcCCcceecCHHHHHHHHHHHHHHHHh
Confidence 1111 1455555443 246899999997653 34445555554
No 88
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=97.40 E-value=0.0029 Score=58.68 Aligned_cols=153 Identities=16% Similarity=0.149 Sum_probs=87.8
Q ss_pred CCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhC-CCeEEEecC-----CCcccccchh-----HHhh--H-HHHH
Q psy11283 98 NGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTG-APIVGLNDS-----GGARIQEGVE-----SLAA--Y-SSVF 163 (314)
Q Consensus 98 ~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~ds-----~Garl~eg~~-----~l~~--~-~~~~ 163 (314)
+|.-..|.-|.+. .--++...-.+.+.++++.+.... +-+|.|.-. .|+.+.+-.. .... . -..+
T Consensus 12 ~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (263)
T PRK07799 12 RGHTLIVTMNRPE-ARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRI 90 (263)
T ss_pred ECCEEEEEECCCc-ccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHH
Confidence 3433334444443 335889999999999998887654 445555432 2344432100 0000 0 0011
Q ss_pred HH-HHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE----------cc-Hhhhhh-----------hhcc
Q psy11283 164 QR-NILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI----------TG-PDVIKS-----------VTNE 220 (314)
Q Consensus 164 ~~-~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~----------~G-P~vv~~-----------~~ge 220 (314)
.. ........|+|+.|.|.|+|||......||++|+.++ +++++ .| ...+.. .+|+
T Consensus 91 ~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~ 169 (263)
T PRK07799 91 DALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGES-AKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGR 169 (263)
T ss_pred HHHHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCC-CEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCC
Confidence 11 1123567999999999999999988888999999874 55554 11 111111 1445
Q ss_pred cCCccccCCchhhccccCceeeEecCHH---HHHHHHHHHHh
Q psy11283 221 DISQEELGGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLLG 259 (314)
Q Consensus 221 ~v~~~~lGGa~~h~~~~Gv~d~~~~de~---~a~~~ir~~l~ 259 (314)
.++.++ . ...|++|.++++++ ++++.++++..
T Consensus 170 ~~~a~e-----A--~~~Glv~~vv~~~~l~~~a~~~a~~~~~ 204 (263)
T PRK07799 170 HITAAE-----A--KEIGLIGHVVPDGQALDKALELAELINA 204 (263)
T ss_pred CCCHHH-----H--HHcCCccEecCcchHHHHHHHHHHHHHh
Confidence 555443 2 46899999998753 44455555543
No 89
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=97.39 E-value=0.0025 Score=58.98 Aligned_cols=149 Identities=17% Similarity=0.141 Sum_probs=86.9
Q ss_pred EEEEEcccccCCCcCHHHHHHHHHHHHHHHHhC-CCeEEEecC-----CCcccccch-------hHHhh----HHHHHHH
Q psy11283 103 FIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTG-APIVGLNDS-----GGARIQEGV-------ESLAA----YSSVFQR 165 (314)
Q Consensus 103 ~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~ds-----~Garl~eg~-------~~l~~----~~~~~~~ 165 (314)
.|.-|++. .-.+++..-.+.+..+++.+.+.. +-+|.|.-+ .|+.+.+-. ..+.. ....+..
T Consensus 15 ~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (262)
T PRK07509 15 DVRLNRPD-KMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQR 93 (262)
T ss_pred EEEecCcc-cccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHH
Confidence 33344433 346899999999999999887654 455666433 334332210 00100 0011111
Q ss_pred H--HHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEcc------H-----hhhhhh-----------hccc
Q psy11283 166 N--ILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITG------P-----DVIKSV-----------TNED 221 (314)
Q Consensus 166 ~--~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~G------P-----~vv~~~-----------~ge~ 221 (314)
. .......|+|+.|.|.|+|||......||++|+.++ +.+.+.- | ..+... +|+.
T Consensus 94 ~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ltg~~ 172 (262)
T PRK07509 94 VSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPD-TKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARV 172 (262)
T ss_pred HHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCC-CEeecchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCC
Confidence 1 123567999999999999999988888999999975 5665511 1 111111 4444
Q ss_pred CCccccCCchhhccccCceeeEecCHH-HHHHHHHHHHhc
Q psy11283 222 ISQEELGGAKTHTSVSGVAHNAFSNDI-DAIQNVRHLLGF 260 (314)
Q Consensus 222 v~~~~lGGa~~h~~~~Gv~d~~~~de~-~a~~~ir~~l~~ 260 (314)
++.+ +. ...|+++.++++.. ++.+.++++...
T Consensus 173 ~~a~-----eA--~~~Glv~~vv~~~~~~a~~~a~~l~~~ 205 (262)
T PRK07509 173 FSAE-----EA--LELGLVTHVSDDPLAAALALAREIAQR 205 (262)
T ss_pred cCHH-----HH--HHcCChhhhhchHHHHHHHHHHHHHhC
Confidence 4443 32 46899999987533 444555555443
No 90
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=97.39 E-value=0.0027 Score=59.25 Aligned_cols=153 Identities=12% Similarity=0.173 Sum_probs=89.3
Q ss_pred ECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhC-CCeEEEecC------CCcccccch-------hHHhhH--H
Q psy11283 97 VNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTG-APIVGLNDS------GGARIQEGV-------ESLAAY--S 160 (314)
Q Consensus 97 I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~ds------~Garl~eg~-------~~l~~~--~ 160 (314)
+++.-+.|.-|++.. .-+++..-.+.+..+++.+.... +-+|.|.-. .|..+.+-. ...... .
T Consensus 19 ~~~~v~~itlnrp~~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 97 (273)
T PRK07396 19 SADGIAKITINRPEV-RNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVL 97 (273)
T ss_pred ecCCEEEEEEcCCcc-cCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHH
Confidence 444333444444433 35899999999999998887654 445555432 333433210 000000 1
Q ss_pred HHHHHHHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEccHh-----------hhhhh-----------h
Q psy11283 161 SVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPD-----------VIKSV-----------T 218 (314)
Q Consensus 161 ~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~GP~-----------vv~~~-----------~ 218 (314)
.++. .+....+|+|+.|.|.|+|||......||++|+.++ +++.+..++ .+... +
T Consensus 98 ~~~~--~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~lt 174 (273)
T PRK07396 98 DLQR--LIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADN-AIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFL 174 (273)
T ss_pred HHHH--HHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCC-cEEecccccccccCCchHHHHHHHHhhHHHHHHHHHh
Confidence 1111 234567999999999999999988888999999874 566552111 11111 4
Q ss_pred cccCCccccCCchhhccccCceeeEecCHH---HHHHHHHHHHhc
Q psy11283 219 NEDISQEELGGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLLGF 260 (314)
Q Consensus 219 ge~v~~~~lGGa~~h~~~~Gv~d~~~~de~---~a~~~ir~~l~~ 260 (314)
|+.++.++ +...|+++.++++++ ++.+.++++.+.
T Consensus 175 g~~~~A~e-------A~~~GLv~~vv~~~~l~~~a~~~a~~la~~ 212 (273)
T PRK07396 175 CRQYDAQE-------ALDMGLVNTVVPLADLEKETVRWCREMLQN 212 (273)
T ss_pred CCCcCHHH-------HHHcCCcCeecCHHHHHHHHHHHHHHHHhC
Confidence 44444443 246899999998642 344455555543
No 91
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=97.39 E-value=0.0019 Score=59.87 Aligned_cols=146 Identities=16% Similarity=0.199 Sum_probs=84.7
Q ss_pred EEEEcccccCCCcCHHHHHHHHHHHHHHHHhC-CCeEEEecCC------Ccccccch------h-HHh--hHHHHHHHHH
Q psy11283 104 IFSQDFTVFGGSLSSVHAEKICKIMDQAMLTG-APIVGLNDSG------GARIQEGV------E-SLA--AYSSVFQRNI 167 (314)
Q Consensus 104 v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~ds~------Garl~eg~------~-~l~--~~~~~~~~~~ 167 (314)
|.-|++. ..-+++..-.+.+.++++.+.... +-+|.|.-++ |..+.+-. . ... .+.+++. .
T Consensus 16 itlnrp~-~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~ 92 (259)
T TIGR01929 16 ITINRPQ-VRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQR--Q 92 (259)
T ss_pred EEecCCc-cccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHH--H
Confidence 3444443 335888888888988888876543 4455554322 23332100 0 000 0111221 1
Q ss_pred HhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEc-----------cHhhhhhh-----------hcccCCcc
Q psy11283 168 LASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFIT-----------GPDVIKSV-----------TNEDISQE 225 (314)
Q Consensus 168 ~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~-----------GP~vv~~~-----------~ge~v~~~ 225 (314)
+.....|+|+.|.|.|+|||......||++|+.+ .+++++. |...+... +|+.++.+
T Consensus 93 l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~-~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~a~ 171 (259)
T TIGR01929 93 IRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAE-NARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAE 171 (259)
T ss_pred HHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecC-CCEecCcccccccCCCccHHHHHHHHhHHHHHHHHHHhCCccCHH
Confidence 3456799999999999999998878899999987 4566551 11111111 44444444
Q ss_pred ccCCchhhccccCceeeEecCHH---HHHHHHHHHHhc
Q psy11283 226 ELGGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLLGF 260 (314)
Q Consensus 226 ~lGGa~~h~~~~Gv~d~~~~de~---~a~~~ir~~l~~ 260 (314)
+ . ...|+++.++++++ ++.+.++++...
T Consensus 172 e-----A--~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 202 (259)
T TIGR01929 172 Q-----A--LDMGLVNTVVPLADLEKETVRWCREILQK 202 (259)
T ss_pred H-----H--HHcCCcccccCHHHHHHHHHHHHHHHHhC
Confidence 3 2 46899999998653 344455555433
No 92
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.38 E-value=0.0001 Score=76.39 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=33.0
Q ss_pred CCceeEecccCC----CceeEEEEEECCeEEEEEeeCCc
Q psy11283 277 SREFFEIQPKYA----KNIIVGFARINGHSVGIVANQPK 311 (314)
Q Consensus 277 ~~~f~E~~~~~a----~~vvtg~arl~G~~VGvvAn~p~ 311 (314)
.++|+|++++|+ ++||||||||+|+||+|||||+.
T Consensus 171 ~ddf~EL~Gdr~~~dD~aIVtGlGRIdGrpV~VIAndkg 209 (762)
T PLN03229 171 TDKFVELHGDRAGYDDPAIVTGIGTIDGKRYMFIGHQKG 209 (762)
T ss_pred HHHHHHhcCcccCCCCCCeEEEEEEECCEEEEEEEecCC
Confidence 578999999998 99999999999999999999984
No 93
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=97.36 E-value=0.0022 Score=59.53 Aligned_cols=104 Identities=17% Similarity=0.173 Sum_probs=61.9
Q ss_pred EEEEEcccccCCCcCH-HHHHHHHHHHHHHHHh-CCCeEEEec-----CCCcccccchh----------HH-hhHHHHHH
Q psy11283 103 FIFSQDFTVFGGSLSS-VHAEKICKIMDQAMLT-GAPIVGLND-----SGGARIQEGVE----------SL-AAYSSVFQ 164 (314)
Q Consensus 103 ~v~a~D~t~~gGs~g~-~~~~K~~r~~~~A~~~-~lPvV~l~d-----s~Garl~eg~~----------~l-~~~~~~~~ 164 (314)
.|.-|++. ..-+++. .-.+.+.++++.+.+. .+-+|.|.- |.|..+.+-.. .. ..+.+.+.
T Consensus 15 ~itlnrp~-~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (266)
T PRK09245 15 TLTMNRPE-TRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQ 93 (266)
T ss_pred EEEECCcc-cccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchhHHHHHHHHHH
Confidence 34444443 3346764 6667788888777654 456666643 34444432100 00 00111111
Q ss_pred H--HHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE
Q psy11283 165 R--NILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI 208 (314)
Q Consensus 165 ~--~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~ 208 (314)
. ..+....+|+|+.|.|.|+|||......||++|+.++ +++.+
T Consensus 94 ~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~ 138 (266)
T PRK09245 94 RIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASET-ARFAE 138 (266)
T ss_pred HHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCC-CEEcc
Confidence 1 1234567999999999999999888888999999874 55554
No 94
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=97.36 E-value=0.0019 Score=59.73 Aligned_cols=141 Identities=14% Similarity=0.117 Sum_probs=81.5
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHhC-CCeEEEec-----CCCcccccchh----HHhhHHHHHHHHHHhcCCCCEEEEEeC
Q psy11283 112 FGGSLSSVHAEKICKIMDQAMLTG-APIVGLND-----SGGARIQEGVE----SLAAYSSVFQRNILASGVVPQISLILG 181 (314)
Q Consensus 112 ~gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~d-----s~Garl~eg~~----~l~~~~~~~~~~~~~~~~VP~isvv~G 181 (314)
..-+++..-...+..+++.+.+.. +=+|.|.- |+|..+.+-.. ...................|+|+.|.|
T Consensus 23 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G 102 (254)
T PRK08259 23 VRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSKPVIAAVSG 102 (254)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhcCCCCEEEEECC
Confidence 345889999999999999887654 33455533 33444432100 000000000001123457899999999
Q ss_pred CCCccccccccCCCEEEEecCceeEEEc----------c-Hhhhhhh-----------hcccCCccccCCchhhccccCc
Q psy11283 182 PCAGGAVYSPAITDFTFMVEHSSYLFIT----------G-PDVIKSV-----------TNEDISQEELGGAKTHTSVSGV 239 (314)
Q Consensus 182 ~~~Gg~a~~~~~~D~vi~~~~~a~i~~~----------G-P~vv~~~-----------~ge~v~~~~lGGa~~h~~~~Gv 239 (314)
.|.|||......||++|+.++ +++++. | ...+... +|+.++.++ . ...|+
T Consensus 103 ~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~e-----A--~~~Gl 174 (254)
T PRK08259 103 YAVAGGLELALWCDLRVAEED-AVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADE-----A--LAIGL 174 (254)
T ss_pred EEEhHHHHHHHhCCEEEecCC-CEecCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHH-----H--HHcCC
Confidence 999999888778999999974 555431 1 1111111 444444443 2 46899
Q ss_pred eeeEecCHH---HHHHHHHHHHhc
Q psy11283 240 AHNAFSNDI---DAIQNVRHLLGF 260 (314)
Q Consensus 240 ~d~~~~de~---~a~~~ir~~l~~ 260 (314)
+|.++++++ ++.+.++++.+.
T Consensus 175 v~~vv~~~~l~~~a~~~a~~la~~ 198 (254)
T PRK08259 175 ANRVVPKGQARAAAEELAAELAAF 198 (254)
T ss_pred CCEeeChhHHHHHHHHHHHHHHhC
Confidence 999998653 344445554443
No 95
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=97.31 E-value=0.004 Score=57.58 Aligned_cols=104 Identities=17% Similarity=0.158 Sum_probs=64.2
Q ss_pred EEEEEcccccCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEecCC------Ccccccc-------hh-HHhhHHHHHHH--
Q psy11283 103 FIFSQDFTVFGGSLSSVHAEKICKIMDQAMLT-GAPIVGLNDSG------GARIQEG-------VE-SLAAYSSVFQR-- 165 (314)
Q Consensus 103 ~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~ds~------Garl~eg-------~~-~l~~~~~~~~~-- 165 (314)
.|.-|.+. ..-+++..-.+.+.++++.+.+. .+-+|.|.-++ |..+.+- .. .+..+.+.+..
T Consensus 15 ~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (260)
T PRK05980 15 LLTLNRPE-KLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMT 93 (260)
T ss_pred EEEECCcc-cccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 33444443 33588899999999999888754 35556554333 2333220 00 01111111111
Q ss_pred HHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE
Q psy11283 166 NILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI 208 (314)
Q Consensus 166 ~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~ 208 (314)
..+....+|+|+.|.|.|.|||......||++|+.+ ++++++
T Consensus 94 ~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~-~a~f~~ 135 (260)
T PRK05980 94 ARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASE-RALFAK 135 (260)
T ss_pred HHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecC-CCEecC
Confidence 113456799999999999999998888899999987 455544
No 96
>PLN02888 enoyl-CoA hydratase
Probab=97.28 E-value=0.0049 Score=57.32 Aligned_cols=143 Identities=10% Similarity=0.077 Sum_probs=83.4
Q ss_pred EEEEcccccCCCcCHHHHHHHHHHHHHHHHhC-CCeEEEec-----CCCcccccchhHHh-----hHHHHHHHHHHhcCC
Q psy11283 104 IFSQDFTVFGGSLSSVHAEKICKIMDQAMLTG-APIVGLND-----SGGARIQEGVESLA-----AYSSVFQRNILASGV 172 (314)
Q Consensus 104 v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~d-----s~Garl~eg~~~l~-----~~~~~~~~~~~~~~~ 172 (314)
|.-|.+. .--+++..-.+.+..+++.+.+.. +-+|.|.- |.|..+.+-..... ...+++. .+....
T Consensus 23 itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~--~i~~~~ 99 (265)
T PLN02888 23 ITINRPK-ALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVA--QMERCR 99 (265)
T ss_pred EEEcCCC-cccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHH--HHHhCC
Confidence 3444443 235788999999999988876543 45555543 23334432100000 0011221 134567
Q ss_pred CCEEEEEeCCCCccccccccCCCEEEEecCceeEEEc-----------cHhhhhh-----------hhcccCCccccCCc
Q psy11283 173 VPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFIT-----------GPDVIKS-----------VTNEDISQEELGGA 230 (314)
Q Consensus 173 VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~-----------GP~vv~~-----------~~ge~v~~~~lGGa 230 (314)
+|+|+.|.|.|+|||......||++|+.++ +++++. +...+.. .+|+.++.++
T Consensus 100 kPvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e---- 174 (265)
T PLN02888 100 KPIIGAINGFAITAGFEIALACDILVASRG-AKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAET---- 174 (265)
T ss_pred CCEEEEECCeeechHHHHHHhCCEEEecCC-CEecCccccccCCCCccHhhHHHHHhCHHHHHHHHHhCCccCHHH----
Confidence 999999999999999988888999999875 555441 1111111 1445555443
Q ss_pred hhhccccCceeeEecCHHHHHHHHHHHH
Q psy11283 231 KTHTSVSGVAHNAFSNDIDAIQNVRHLL 258 (314)
Q Consensus 231 ~~h~~~~Gv~d~~~~de~~a~~~ir~~l 258 (314)
+...|++|.++++++ ..+.++++.
T Consensus 175 ---A~~~Glv~~vv~~~~-l~~~a~~~a 198 (265)
T PLN02888 175 ---AERWGLVNHVVEESE-LLKKAREVA 198 (265)
T ss_pred ---HHHcCCccEeeChHH-HHHHHHHHH
Confidence 246899999998653 333444443
No 97
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=97.28 E-value=0.0038 Score=57.58 Aligned_cols=143 Identities=22% Similarity=0.293 Sum_probs=85.0
Q ss_pred EEEEcccccCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEec-----CCCcccccch-----hHHhhH----HHHHHHHHH
Q psy11283 104 IFSQDFTVFGGSLSSVHAEKICKIMDQAMLT-GAPIVGLND-----SGGARIQEGV-----ESLAAY----SSVFQRNIL 168 (314)
Q Consensus 104 v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~d-----s~Garl~eg~-----~~l~~~----~~~~~~~~~ 168 (314)
|.-|.+. . .+++..-.+.+.++++.+.+. .+-+|.|.- |.|..+.+-. .....+ .+++.. +
T Consensus 15 itl~rp~-~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--l 90 (257)
T PRK07658 15 ITLNHPP-A-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFER--V 90 (257)
T ss_pred EEECCCC-C-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHH--H
Confidence 3344443 3 789999999999999888754 455666643 2344443210 011111 112222 3
Q ss_pred hcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEc----------c-Hhhhhh-----------hhcccCCccc
Q psy11283 169 ASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFIT----------G-PDVIKS-----------VTNEDISQEE 226 (314)
Q Consensus 169 ~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~----------G-P~vv~~-----------~~ge~v~~~~ 226 (314)
.....|+|+.|.|.|+|||......||++|+.++ +++++. | ...+.. .+|+.++.++
T Consensus 91 ~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e 169 (257)
T PRK07658 91 EKFSKPVIAAIHGAALGGGLELAMSCHIRFATES-AKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAE 169 (257)
T ss_pred HhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCC-CcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCcCHHH
Confidence 4567999999999999999888778999999874 555441 1 111111 1444555443
Q ss_pred cCCchhhccccCceeeEecCHH---HHHHHHHHHH
Q psy11283 227 LGGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLL 258 (314)
Q Consensus 227 lGGa~~h~~~~Gv~d~~~~de~---~a~~~ir~~l 258 (314)
. ...|++|.+++.++ ++.+.++++.
T Consensus 170 -----A--~~~Glv~~vv~~~~l~~~a~~~a~~l~ 197 (257)
T PRK07658 170 -----A--LKWGLVNGVFPEETLLDDAKKLAKKIA 197 (257)
T ss_pred -----H--HHcCCcCeecChhHHHHHHHHHHHHHH
Confidence 2 46899999987542 3444444444
No 98
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=97.27 E-value=0.00087 Score=58.63 Aligned_cols=89 Identities=15% Similarity=0.200 Sum_probs=70.4
Q ss_pred CCcCHHHHHHHHHHHHHHHHhC-CCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEe---CCCCccccc
Q psy11283 114 GSLSSVHAEKICKIMDQAMLTG-APIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLIL---GPCAGGAVY 189 (314)
Q Consensus 114 Gs~g~~~~~K~~r~~~~A~~~~-lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~---G~~~Gg~a~ 189 (314)
|.+.+....-+.|.++.|.+.+ -+|+..+||+|..+..+ ..+... +....+|+++++. |.+.++|++
T Consensus 8 G~I~~~~~~~l~~~l~~A~~~~~~~i~l~inSPGG~v~~~--------~~I~~~-i~~~~~pvv~~v~p~g~~AaSag~~ 78 (172)
T cd07015 8 GQITSYTYDQFDRYITIAEQDNAEAIIIELDTPGGRADAA--------GNIVQR-IQQSKIPVIIYVYPPGASAASAGTY 78 (172)
T ss_pred eEECHhHHHHHHHHHHHHhcCCCCeEEEEEECCCCCHHHH--------HHHHHH-HHhcCcCEEEEEecCCCeehhHHHH
Confidence 7788888999999999998876 46888899999876432 111221 2345799999999 888888888
Q ss_pred cccCCCEEEEecCceeEEEccHh
Q psy11283 190 SPAITDFTFMVEHSSYLFITGPD 212 (314)
Q Consensus 190 ~~~~~D~vi~~~~~a~i~~~GP~ 212 (314)
...-+|.++|.+ ++.++..+|-
T Consensus 79 I~~a~~~i~m~p-~s~iG~~~pi 100 (172)
T cd07015 79 IALGSHLIAMAP-GTSIGACRPI 100 (172)
T ss_pred HHHhcCceEECC-CCEEEEcccc
Confidence 888899999987 5889999984
No 99
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=97.25 E-value=0.004 Score=57.29 Aligned_cols=141 Identities=17% Similarity=0.085 Sum_probs=82.5
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHhC-CCeEEEecC-----CCcccccchhHH-hhHHHHHHHH--HHhcCCCCEEEEEeCC
Q psy11283 112 FGGSLSSVHAEKICKIMDQAMLTG-APIVGLNDS-----GGARIQEGVESL-AAYSSVFQRN--ILASGVVPQISLILGP 182 (314)
Q Consensus 112 ~gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~ds-----~Garl~eg~~~l-~~~~~~~~~~--~~~~~~VP~isvv~G~ 182 (314)
..-+++..-.+.+.++++.+.... +=+|.|.-+ +|..+.+-.... ..+.+.+... .......|+|+.|.|.
T Consensus 20 ~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 99 (248)
T PRK06072 20 KLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAINGV 99 (248)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 346899999999999999887653 345555432 233332210000 0111111111 1345678999999999
Q ss_pred CCccccccccCCCEEEEecCceeEEEcc------Hh-----hhhh----------hhcccCCccccCCchhhccccCcee
Q psy11283 183 CAGGAVYSPAITDFTFMVEHSSYLFITG------PD-----VIKS----------VTNEDISQEELGGAKTHTSVSGVAH 241 (314)
Q Consensus 183 ~~Gg~a~~~~~~D~vi~~~~~a~i~~~G------P~-----vv~~----------~~ge~v~~~~lGGa~~h~~~~Gv~d 241 (314)
|+|||......||++|+.++ +.+.+.- |. .+.. .+|+.++.++ +...|+++
T Consensus 100 a~GgG~~lal~cD~~ia~~~-a~f~~~~~~~Gl~p~~g~~~~l~~~~g~~a~~lll~g~~~~a~e-------A~~~Glv~ 171 (248)
T PRK06072 100 TAGACIGIALSTDFKFASRD-VKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILVLGGEFTAEE-------AERWGLLK 171 (248)
T ss_pred eehHHHHHHHhCCEEEEcCC-CEEecchhhcCcCCCchHHHHHHHHhhHHHHHHHHhCCccCHHH-------HHHCCCcc
Confidence 99999888788999999875 5454310 11 1111 1444444443 24679999
Q ss_pred eEecCHHHHHHHHHHHHhc
Q psy11283 242 NAFSNDIDAIQNVRHLLGF 260 (314)
Q Consensus 242 ~~~~de~~a~~~ir~~l~~ 260 (314)
.+.+...++.+.++++.+.
T Consensus 172 ~~~~~~~~a~~~a~~la~~ 190 (248)
T PRK06072 172 ISEDPLSDAEEMANRISNG 190 (248)
T ss_pred ccchHHHHHHHHHHHHHhC
Confidence 6433345667777777654
No 100
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=97.24 E-value=0.005 Score=57.05 Aligned_cols=106 Identities=10% Similarity=0.087 Sum_probs=65.8
Q ss_pred CCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEecC------CCcccccch------hHH-hhHHHHH
Q psy11283 98 NGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLT-GAPIVGLNDS------GGARIQEGV------ESL-AAYSSVF 163 (314)
Q Consensus 98 ~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~ds------~Garl~eg~------~~l-~~~~~~~ 163 (314)
+|.-..|.-|++. . -+++..-.+.+.++++.+... .+-+|.|.-+ .|..+.+-. ... ...-..+
T Consensus 10 ~~~v~~itlnrp~-~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (261)
T PRK03580 10 NGSILEITLDRPK-A-NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGL 87 (261)
T ss_pred ECCEEEEEECCcc-c-cCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHH
Confidence 3333334455553 3 688999999999998887654 3455555432 333332200 000 0001111
Q ss_pred HHHHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE
Q psy11283 164 QRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI 208 (314)
Q Consensus 164 ~~~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~ 208 (314)
. ......+|+|+.|.|.|+|||......||++|+.+ ++++++
T Consensus 88 ~--~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~-~a~f~~ 129 (261)
T PRK03580 88 T--EIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAD-NASFAL 129 (261)
T ss_pred H--HHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecC-CCEEeC
Confidence 1 23456799999999999999998888899999987 466654
No 101
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=97.23 E-value=0.0045 Score=58.31 Aligned_cols=137 Identities=15% Similarity=0.238 Sum_probs=79.3
Q ss_pred CCCcCHHHHHHHHHHHHHHHHh-CCCeEEEec-----CCCcccccch--hH------------------------HhhHH
Q psy11283 113 GGSLSSVHAEKICKIMDQAMLT-GAPIVGLND-----SGGARIQEGV--ES------------------------LAAYS 160 (314)
Q Consensus 113 gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~d-----s~Garl~eg~--~~------------------------l~~~~ 160 (314)
.-+++..-.+.+.++++.+... .+=+|.|.- |.|..+.+-. .. +....
T Consensus 25 ~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (288)
T PRK08290 25 RNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREW 104 (288)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccccccccccccccccchhhHHHHHH
Confidence 4678888888999888877643 355565543 3344443310 00 00000
Q ss_pred HHHHH--HHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE-------cc------Hhhh-----hh--hh
Q psy11283 161 SVFQR--NILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI-------TG------PDVI-----KS--VT 218 (314)
Q Consensus 161 ~~~~~--~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~-------~G------P~vv-----~~--~~ 218 (314)
..+.. .......+|+|+.|.|.|+|||......||++|+.++ +++++ .| |+.+ .. .+
T Consensus 105 ~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~-a~f~~pe~~lGl~~~~~~~l~~~iG~~~A~~lllt 183 (288)
T PRK08290 105 EVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDD-AFFSDPVVRMGIPGVEYFAHPWELGPRKAKELLFT 183 (288)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCC-CEecCcccccCcCcchHHHHHHHhhHHHHHHHHHc
Confidence 11111 1134578999999999999999988888999999874 44432 21 1111 10 14
Q ss_pred cccCCccccCCchhhccccCceeeEecCHHHHHHHHHHHH
Q psy11283 219 NEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLL 258 (314)
Q Consensus 219 ge~v~~~~lGGa~~h~~~~Gv~d~~~~de~~a~~~ir~~l 258 (314)
|+.++.++ . ...|+++.+++++ +..+.++++.
T Consensus 184 G~~i~A~e-----A--~~~GLV~~vv~~~-~l~~~a~~~a 215 (288)
T PRK08290 184 GDRLTADE-----A--HRLGMVNRVVPRD-ELEAETLELA 215 (288)
T ss_pred CCCCCHHH-----H--HHCCCccEeeCHH-HHHHHHHHHH
Confidence 44444443 2 4689999999764 3333333333
No 102
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=97.21 E-value=0.0059 Score=56.49 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=65.2
Q ss_pred CCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhC-CCeEEEecCC------Ccccccchh--HHhhHHHHHHH-HH
Q psy11283 98 NGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTG-APIVGLNDSG------GARIQEGVE--SLAAYSSVFQR-NI 167 (314)
Q Consensus 98 ~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~ds~------Garl~eg~~--~l~~~~~~~~~-~~ 167 (314)
+|.-..|.-|++... -+++..-.+.+.++++.+.+.. +-+|.|.-++ |..+.+-.. ........+.. ..
T Consensus 11 ~~~v~~itlnrp~~~-Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 89 (259)
T PRK06494 11 KGHVTIVTLNRPEVM-NALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTS 89 (259)
T ss_pred ECCEEEEEEcCcccc-CCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHH
Confidence 343333444544432 4788888888988888876554 4555554333 333332100 00000011111 11
Q ss_pred HhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE
Q psy11283 168 LASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI 208 (314)
Q Consensus 168 ~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~ 208 (314)
......|+|+.|-|.|+|||......||++|+.++ +++.+
T Consensus 90 ~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~ 129 (259)
T PRK06494 90 RFDLDKPIIAAVNGVAMGGGFELALACDLIVAAEN-ATFAL 129 (259)
T ss_pred HhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCC-CEEeC
Confidence 23567999999999999999988888999999874 66655
No 103
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.20 E-value=0.00051 Score=64.67 Aligned_cols=28 Identities=7% Similarity=0.128 Sum_probs=25.6
Q ss_pred CCCceeEEEEEECCeEEEEEeeCCccCC
Q psy11283 287 YAKNIIVGFARINGHSVGIVANQPKVAA 314 (314)
Q Consensus 287 ~a~~vvtg~arl~G~~VGvvAn~p~~~~ 314 (314)
.+.+||||+++|+|+||+|+|||+.+++
T Consensus 106 ~~d~vVtG~g~I~G~~V~v~a~D~~f~g 133 (285)
T TIGR00515 106 EKDAVVTGKGTLYGMPIVVAVFDFAFMG 133 (285)
T ss_pred CCCcEEEEEEEECCEEEEEEEEeccccC
Confidence 3579999999999999999999999875
No 104
>PLN02921 naphthoate synthase
Probab=97.15 E-value=0.0091 Score=57.40 Aligned_cols=148 Identities=13% Similarity=0.161 Sum_probs=86.7
Q ss_pred EEEEcccccCCCcCHHHHHHHHHHHHHHHHhC-CCeEEEecCC------Ccccccch----hHHhhHHHH-HH--HHHHh
Q psy11283 104 IFSQDFTVFGGSLSSVHAEKICKIMDQAMLTG-APIVGLNDSG------GARIQEGV----ESLAAYSSV-FQ--RNILA 169 (314)
Q Consensus 104 v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~ds~------Garl~eg~----~~l~~~~~~-~~--~~~~~ 169 (314)
|.-|++. ..-+++..-...+.++++.+.+.. +-+|.|.-++ |..+.+-. .......+. .. ...+.
T Consensus 80 ItLnrP~-~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~ 158 (327)
T PLN02921 80 ITINRPE-RRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIR 158 (327)
T ss_pred EEECCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHH
Confidence 3444443 336899999999999999887543 5566665433 33332210 000011110 01 01234
Q ss_pred cCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEccH-----------hhhhhh-----------hcccCCcccc
Q psy11283 170 SGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGP-----------DVIKSV-----------TNEDISQEEL 227 (314)
Q Consensus 170 ~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~GP-----------~vv~~~-----------~ge~v~~~~l 227 (314)
...+|+|+.|-|.|+|||......||++|+.++ +.+++..+ ..+... +|+.++.+
T Consensus 159 ~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~-A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~-- 235 (327)
T PLN02921 159 RLPKPVIAMVAGYAVGGGHILHMVCDLTIAADN-AVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTAS-- 235 (327)
T ss_pred hCCCCEEEEECCEEecHHHHHHHhCCEEEEeCC-CEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHH--
Confidence 567999999999999999988888999999874 66655221 111111 33344433
Q ss_pred CCchhhccccCceeeEecCHH---HHHHHHHHHHhc
Q psy11283 228 GGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLLGF 260 (314)
Q Consensus 228 GGa~~h~~~~Gv~d~~~~de~---~a~~~ir~~l~~ 260 (314)
+. ...|+++.++++++ ++.+.++++...
T Consensus 236 ---eA--~~~GLV~~vv~~~~l~~~a~~~a~~la~~ 266 (327)
T PLN02921 236 ---EA--LKMGLVNTVVPLDELEGETVKWCREILRN 266 (327)
T ss_pred ---HH--HHCCCceEEeCHHHHHHHHHHHHHHHHcc
Confidence 32 46899999997643 344455555543
No 105
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=97.10 E-value=0.0094 Score=55.89 Aligned_cols=95 Identities=13% Similarity=0.107 Sum_probs=60.2
Q ss_pred CCCcCHHHHHHHHHHHHHHHHhC-CCeEEEec-------CCCcccccch------hHHhhHHHHHHH--HHHhcCCCCEE
Q psy11283 113 GGSLSSVHAEKICKIMDQAMLTG-APIVGLND-------SGGARIQEGV------ESLAAYSSVFQR--NILASGVVPQI 176 (314)
Q Consensus 113 gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~d-------s~Garl~eg~------~~l~~~~~~~~~--~~~~~~~VP~i 176 (314)
--+++..-...+.++++...+.. +=+|.|.- |+|..+.+-. .....+.+.+.. ..+....+|+|
T Consensus 32 ~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 111 (278)
T PLN03214 32 VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATV 111 (278)
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence 36899999999999998887553 44555533 2233332210 000111111111 11345679999
Q ss_pred EEEeCCCCccccccccCCCEEEEecCceeEEE
Q psy11283 177 SLILGPCAGGAVYSPAITDFTFMVEHSSYLFI 208 (314)
Q Consensus 177 svv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~ 208 (314)
+.|-|.|+|||......||++|+.+ .+++++
T Consensus 112 AaV~G~a~GgG~~lalacD~ria~~-~a~f~~ 142 (278)
T PLN03214 112 CAIRGACPAGGCAVSLCCDYRLQTT-EGTMGL 142 (278)
T ss_pred EEEcCcccchHHHHHHhCCEEEecC-CCEecC
Confidence 9999999999988888899999987 455554
No 106
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=97.08 E-value=0.00057 Score=58.54 Aligned_cols=88 Identities=23% Similarity=0.177 Sum_probs=64.9
Q ss_pred CCcCH---HHHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCcccccc
Q psy11283 114 GSLSS---VHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYS 190 (314)
Q Consensus 114 Gs~g~---~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~ 190 (314)
|.+.. ..+..+.+.++.+... -|++.++||+|..+..+. .+.+. ..+...|+++++.|.|.|++++.
T Consensus 7 g~I~~~~~~~~~~~~~~l~~~~~~-~~i~l~inspGG~~~~~~----~i~~~-----i~~~~~pvi~~v~g~a~s~g~~i 76 (160)
T cd07016 7 GDIGSDWGVTAKEFKDALDALGDD-SDITVRINSPGGDVFAGL----AIYNA-----LKRHKGKVTVKIDGLAASAASVI 76 (160)
T ss_pred eEeCCCcccCHHHHHHHHHhccCC-CCEEEEEECCCCCHHHHH----HHHHH-----HHhcCCCEEEEEcchHHhHHHHH
Confidence 44555 5777888888877666 799999999997754321 11222 23346899999999999999999
Q ss_pred ccCCCEEEEecCceeEEEccHh
Q psy11283 191 PAITDFTFMVEHSSYLFITGPD 212 (314)
Q Consensus 191 ~~~~D~vi~~~~~a~i~~~GP~ 212 (314)
+..||+++|.+ ++.+.+..|.
T Consensus 77 a~a~d~~~~~~-~a~~~~~~~~ 97 (160)
T cd07016 77 AMAGDEVEMPP-NAMLMIHNPS 97 (160)
T ss_pred HhcCCeEEECC-CcEEEEECCc
Confidence 88999999987 5777765553
No 107
>KOG0368|consensus
Probab=97.04 E-value=0.00059 Score=74.73 Aligned_cols=116 Identities=21% Similarity=0.203 Sum_probs=82.9
Q ss_pred cCCCCHHHHHH----------hhcCCCcceeecccccccccCcccccCCCCCCcEEEEEEEECCEEEEEEEEccc-----
Q psy11283 46 KGKLTARERVE----------LLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFT----- 110 (314)
Q Consensus 46 ~g~l~arerI~----------~L~D~gsf~E~~~~~~~~~~~~~~~~~~~~~~gvVtG~G~I~Gr~v~v~a~D~t----- 110 (314)
+..+++|-.|+ -|||.|||.|+-. .++.+||+|.+|++|.||+|+|.+..
T Consensus 1800 q~~yD~Rwli~G~~~~~~~~~GlFDk~SF~Eil~---------------~WAktVV~GRArLgGIPvGVIavEtrtve~~ 1864 (2196)
T KOG0368|consen 1800 QNPYDPRWLIAGKNDSTGWLSGLFDKGSFDEILS---------------GWAKTVVTGRARLGGIPVGVIAVETRTVENI 1864 (2196)
T ss_pred CCCCCHHHHhcCCcCCCccccccccCccHHHHHh---------------HHhhHheecceecCCcceEEEEEEeeeeeee
Confidence 45677777664 4899999999852 46899999999999999999997651
Q ss_pred ---------------c-cCCCcCHHHHHHHHHHHHHHHHhCCCeEEEec----CCCcc-cccchhHHhhHHHHHHHHHHh
Q psy11283 111 ---------------V-FGGSLSSVHAEKICKIMDQAMLTGAPIVGLND----SGGAR-IQEGVESLAAYSSVFQRNILA 169 (314)
Q Consensus 111 ---------------~-~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~d----s~Gar-l~eg~~~l~~~~~~~~~~~~~ 169 (314)
- -|=-|.|.++-|-+.++.-=.+.++|++.|.+ |||-| |-++ .|.-.+.+..+ ++
T Consensus 1865 vPADPan~dS~e~i~q~AGQVWyPdSAfKTaQAInDFNrEqLPLmIiAnwRGFSGGqkDMy~~--VLkfGa~IVDa--L~ 1940 (2196)
T KOG0368|consen 1865 VPADPANLDSEEQITQEAGQVWYPDSAFKTAQAINDFNREQLPLMIIANWRGFSGGQKDMYDQ--VLKFGAYIVDA--LR 1940 (2196)
T ss_pred ccCCCCCCCcHhhhhhcCCceecCchHHHHHHHHhhhccccCCeEEeecccccCccchHHHHH--HHHHHHHHHHH--HH
Confidence 1 24478999999999999888889999999998 44443 1111 12233444444 23
Q ss_pred cCCCCEEEEEe
Q psy11283 170 SGVVPQISLIL 180 (314)
Q Consensus 170 ~~~VP~isvv~ 180 (314)
.-+-|++..|-
T Consensus 1941 ~YkQPv~vYIP 1951 (2196)
T KOG0368|consen 1941 QYKQPVLVYIP 1951 (2196)
T ss_pred HhCCceEEEcC
Confidence 34568776653
No 108
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=97.00 E-value=0.0088 Score=56.67 Aligned_cols=156 Identities=14% Similarity=0.155 Sum_probs=89.7
Q ss_pred ECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEec-----CCCcccccchh-------------HHh
Q psy11283 97 VNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLT-GAPIVGLND-----SGGARIQEGVE-------------SLA 157 (314)
Q Consensus 97 I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~d-----s~Garl~eg~~-------------~l~ 157 (314)
++|.-..|.-|++. .--+++..-.+.+.++++.+... .+-+|.|.- |+|+.+.+... ...
T Consensus 11 ~~~~Va~ItLnrP~-~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 89 (298)
T PRK12478 11 TAGPVATITLNRPE-QLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWDPGK 89 (298)
T ss_pred ccCCEEEEEecCCc-ccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccccCchh
Confidence 34443344455544 33588899999999999888654 466777754 34555543110 000
Q ss_pred hH----H------HHHHHHHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEccHh---------hhhhhh
Q psy11283 158 AY----S------SVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPD---------VIKSVT 218 (314)
Q Consensus 158 ~~----~------~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~GP~---------vv~~~~ 218 (314)
.+ . ..+. .+....+|+|+.|-|.|+|||......||++|+.++ +++++.-.+ .... .
T Consensus 90 ~~~~~~~~~~~~~~~~~--~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-A~f~~pe~~l~G~~~~~~~~~~-v 165 (298)
T PRK12478 90 DFAMVTARETGPTQKFM--AIWRASKPVIAQVHGWCVGGASDYALCADIVIASDD-AVIGTPYSRMWGAYLTGMWLYR-L 165 (298)
T ss_pred hhhhhhhhhcchHHHHH--HHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCC-cEEeccccccccCCchhHHHHH-h
Confidence 00 0 1111 134567999999999999999988778999999874 555441111 0110 1
Q ss_pred ccc------CCccccCCchhhccccCceeeEecCHH---HHHHHHHHHHh
Q psy11283 219 NED------ISQEELGGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLLG 259 (314)
Q Consensus 219 ge~------v~~~~lGGa~~h~~~~Gv~d~~~~de~---~a~~~ir~~l~ 259 (314)
|.. ++.+.+.+.+ +...|+++.++++++ ++.+.++++..
T Consensus 166 G~~~A~~llltg~~i~A~e--A~~~GLV~~vv~~~~l~~~a~~~a~~la~ 213 (298)
T PRK12478 166 SLAKVKWHSLTGRPLTGVQ--AAEAELINEAVPFERLEARVAEVATELAR 213 (298)
T ss_pred hHHHHHHHHHcCCccCHHH--HHHcCCcceecCHHHHHHHHHHHHHHHHh
Confidence 110 1223333333 246899999998642 44445555543
No 109
>PRK08788 enoyl-CoA hydratase; Validated
Probab=96.88 E-value=0.023 Score=53.71 Aligned_cols=137 Identities=11% Similarity=0.067 Sum_probs=80.0
Q ss_pred CCcCHHHHHHHHHHHHHHHH------hCCCeEEEecC------CCcccccch--------hHHhhHHH-HHHHHH-Hh--
Q psy11283 114 GSLSSVHAEKICKIMDQAML------TGAPIVGLNDS------GGARIQEGV--------ESLAAYSS-VFQRNI-LA-- 169 (314)
Q Consensus 114 Gs~g~~~~~K~~r~~~~A~~------~~lPvV~l~ds------~Garl~eg~--------~~l~~~~~-~~~~~~-~~-- 169 (314)
-+++..-.+.+..+++.+.+ ..+-+|.|.-. .|..+.+-. ..+....+ ++.... ..
T Consensus 38 Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (287)
T PRK08788 38 PCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRG 117 (287)
T ss_pred CCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHh
Confidence 48999999999999998876 23455655433 233332200 00111111 111110 11
Q ss_pred -cCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE----------cc-Hhhhhhh-----------hcccCCccc
Q psy11283 170 -SGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI----------TG-PDVIKSV-----------TNEDISQEE 226 (314)
Q Consensus 170 -~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~----------~G-P~vv~~~-----------~ge~v~~~~ 226 (314)
....|+|+.|-|.|+|||......||++|+.++ +++++ .| ...+... +|+.++.+
T Consensus 118 ~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pev~lGl~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~- 195 (287)
T PRK08788 118 FGAGAISIALVQGDALGGGFEAALSHHTIIAERG-AKMGFPEILFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAE- 195 (287)
T ss_pred cCCCCCEEEEECCeeehHHHHHHHhCCEEEecCC-CEeeCchhhhCcCCCchHHHHHHHHhhHHHHHHHHHcCCCCCHH-
Confidence 467999999999999999888788999999875 66655 11 1111111 44444433
Q ss_pred cCCchhhccccCceeeEecCHH---HHHHHHHHHH
Q psy11283 227 LGGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLL 258 (314)
Q Consensus 227 lGGa~~h~~~~Gv~d~~~~de~---~a~~~ir~~l 258 (314)
+. ...|+++.++++++ ++.+.++++.
T Consensus 196 ----eA--~~~GLV~~vv~~~el~~~a~~~a~~ia 224 (287)
T PRK08788 196 ----EL--HDMGLVDVLVEDGQGEAAVRTFIRKSK 224 (287)
T ss_pred ----HH--HHCCCCcEecCchHHHHHHHHHHHHHh
Confidence 33 46899999997642 3444445544
No 110
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=96.88 E-value=0.018 Score=58.97 Aligned_cols=144 Identities=14% Similarity=0.113 Sum_probs=85.6
Q ss_pred CCCcCHHHHHHHHHHHHHHH-H-hCCCeEEEec------CCCcccccchhH----HhhHHHHH----HHH--HHhcCCCC
Q psy11283 113 GGSLSSVHAEKICKIMDQAM-L-TGAPIVGLND------SGGARIQEGVES----LAAYSSVF----QRN--ILASGVVP 174 (314)
Q Consensus 113 gGs~g~~~~~K~~r~~~~A~-~-~~lPvV~l~d------s~Garl~eg~~~----l~~~~~~~----~~~--~~~~~~VP 174 (314)
.-+++..-...+.++++.+. + ..+.+|.|.- |+|+.+.+-... .....+.. ... ......+|
T Consensus 42 ~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkP 121 (546)
T TIGR03222 42 LNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLK 121 (546)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCC
Confidence 35888888888998888876 3 4567777752 445554321000 00011111 111 12346799
Q ss_pred EEEEEeCCCCccccccccCCCEEEEecC-ceeEEEc-----c--H------hhh-----h-------hhhcccCCccccC
Q psy11283 175 QISLILGPCAGGAVYSPAITDFTFMVEH-SSYLFIT-----G--P------DVI-----K-------SVTNEDISQEELG 228 (314)
Q Consensus 175 ~isvv~G~~~Gg~a~~~~~~D~vi~~~~-~a~i~~~-----G--P------~vv-----~-------~~~ge~v~~~~lG 228 (314)
+|+.|.|.|+|||......||++|+.++ .+++.+. | | +.+ . ..+|+.++.+
T Consensus 122 vIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~--- 198 (546)
T TIGR03222 122 FLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGK--- 198 (546)
T ss_pred EEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCccchhhhccccchhCHHHHHHHHHcCCCccHH---
Confidence 9999999999999888778999999975 2344330 1 1 111 0 0234444433
Q ss_pred CchhhccccCceeeEecCH---HHHHHHHHHHHhcCCC
Q psy11283 229 GAKTHTSVSGVAHNAFSND---IDAIQNVRHLLGFLPM 263 (314)
Q Consensus 229 Ga~~h~~~~Gv~d~~~~de---~~a~~~ir~~l~~lP~ 263 (314)
+ +...|+++.+++++ +++.+.++++.+.-|.
T Consensus 199 --e--A~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~ 232 (546)
T TIGR03222 199 --R--AKEWRLVDEVVKPSQFDAAIAERAAELAAQSDR 232 (546)
T ss_pred --H--HHHcCCceEEeChHHHHHHHHHHHHHHHhCCCC
Confidence 2 24689999999865 3455666777665444
No 111
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=96.87 E-value=0.0066 Score=52.89 Aligned_cols=92 Identities=12% Similarity=0.099 Sum_probs=63.8
Q ss_pred CCcCHHHHHHHHHHHHHHHHh-CCCeE-EEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCccccccc
Q psy11283 114 GSLSSVHAEKICKIMDQAMLT-GAPIV-GLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSP 191 (314)
Q Consensus 114 Gs~g~~~~~K~~r~~~~A~~~-~lPvV-~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~ 191 (314)
...+......+.+.++.|.+. ++-.| .-.+|+|..+.+ ...+.+.+.. ......|+|+.+-|.|.|++.+..
T Consensus 17 ~~~~~~~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~----~~~~~~~i~~--~~~~~kpVia~v~G~a~g~g~~la 90 (177)
T cd07014 17 DTQGNVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTA----SEVIRAELAA--ARAAGKPVVASGGGNAASGGYWIS 90 (177)
T ss_pred CCCCCcCHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHH----HHHHHHHHHH--HHhCCCCEEEEECCchhHHHHHHH
Confidence 344455667888888877665 45544 446777754432 1122333333 234578999999999999999998
Q ss_pred cCCCEEEEecCceeEEEccHh
Q psy11283 192 AITDFTFMVEHSSYLFITGPD 212 (314)
Q Consensus 192 ~~~D~vi~~~~~a~i~~~GP~ 212 (314)
..||+++|.+ ++.+++.|..
T Consensus 91 ~a~D~i~a~~-~a~~~~~G~~ 110 (177)
T cd07014 91 TPANYIVANP-STLVGSIGIF 110 (177)
T ss_pred HhCCEEEECC-CCeEEEechH
Confidence 8999999987 5889998864
No 112
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=96.76 E-value=0.0047 Score=52.66 Aligned_cols=91 Identities=19% Similarity=0.257 Sum_probs=65.8
Q ss_pred CCCcCHHHHHHHHHHHHHHHHhC--CCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCcccccc
Q psy11283 113 GGSLSSVHAEKICKIMDQAMLTG--APIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYS 190 (314)
Q Consensus 113 gGs~g~~~~~K~~r~~~~A~~~~--lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~ 190 (314)
.|.+++...+.+.+.++.+.+.. -+||.-.+|+|..+..+ ..+.+.+ ..-..|+++.+.|.|.+++.+.
T Consensus 5 ~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~----~~i~~~l-----~~~~kpvva~~~g~~~s~g~~l 75 (161)
T cd00394 5 NGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAG----MNIVDAL-----QASRKPVIAYVGGQAASAGYYI 75 (161)
T ss_pred EeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHH----HHHHHHH-----HHhCCCEEEEECChhHHHHHHH
Confidence 46677778888999999887654 45666678887654321 1122222 2234899999999999999888
Q ss_pred ccCCCEEEEecCceeEEEccHhh
Q psy11283 191 PAITDFTFMVEHSSYLFITGPDV 213 (314)
Q Consensus 191 ~~~~D~vi~~~~~a~i~~~GP~v 213 (314)
...||.++|.+ ++.+++.||..
T Consensus 76 a~~~d~~~~~~-~a~~~~~g~~~ 97 (161)
T cd00394 76 ATAANKIVMAP-GTRVGSHGPIG 97 (161)
T ss_pred HhCCCEEEECC-CCEEEEeeeEE
Confidence 88899999987 57888888764
No 113
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=96.75 E-value=0.032 Score=53.91 Aligned_cols=108 Identities=19% Similarity=0.139 Sum_probs=65.6
Q ss_pred ECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhC-CCeEEEecCC------Ccccccch-------h----H-Hh
Q psy11283 97 VNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTG-APIVGLNDSG------GARIQEGV-------E----S-LA 157 (314)
Q Consensus 97 I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~ds~------Garl~eg~-------~----~-l~ 157 (314)
++|.-..|.-|++. ..-+++..-...+.++++.+.... +-+|.|.-.+ |+.+.+-. . . +.
T Consensus 9 ~~~~v~~itLnrP~-~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 87 (342)
T PRK05617 9 VEGGVGVITLNRPK-ALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFR 87 (342)
T ss_pred EECCEEEEEECCCc-cccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHH
Confidence 34443334444443 335788888888888888776543 4456554433 33332200 0 0 00
Q ss_pred hHHHHHHHHHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE
Q psy11283 158 AYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI 208 (314)
Q Consensus 158 ~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~ 208 (314)
...+++. .......|+|+.|.|.|+|||......||++|+.+ .+++++
T Consensus 88 ~~~~~~~--~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~-~a~f~~ 135 (342)
T PRK05617 88 EEYRLNA--LIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTE-RTKMAM 135 (342)
T ss_pred HHHHHHH--HHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcC-CCEeeC
Confidence 0011111 13456799999999999999998888899999987 466654
No 114
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0087 Score=59.07 Aligned_cols=99 Identities=18% Similarity=0.301 Sum_probs=77.1
Q ss_pred CCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhC-CCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEE
Q psy11283 98 NGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTG-APIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQI 176 (314)
Q Consensus 98 ~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~i 176 (314)
.+.+|.++--| |.+++.....+.|.++.|.+.+ -.+|...||+|-++. +.++ +.++ ..+..||++
T Consensus 24 ~~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~a~~vvl~ldTPGGl~~----sm~~---iv~~--i~~s~vPV~ 89 (436)
T COG1030 24 AEKKVYVIEID-----GAIDPASADYLQRALQSAEEENAAAVVLELDTPGGLLD----SMRQ---IVRA--ILNSPVPVI 89 (436)
T ss_pred cCCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCchHH----HHHH---HHHH--HHcCCCCEE
Confidence 56788888888 8999999999999999999999 888888999998742 2233 3333 356789988
Q ss_pred EEEeCC---CCccccccccCCCEEEEecCceeEEEccH
Q psy11283 177 SLILGP---CAGGAVYSPAITDFTFMVEHSSYLFITGP 211 (314)
Q Consensus 177 svv~G~---~~Gg~a~~~~~~D~vi~~~~~a~i~~~GP 211 (314)
..+.=+ +...|+|..-.+|...|.|+ ..|+-+-|
T Consensus 90 ~yv~p~ga~AaSAGtyI~m~~hiaaMAPg-T~iGaa~P 126 (436)
T COG1030 90 GYVVPDGARAASAGTYILMATHIAAMAPG-TNIGAATP 126 (436)
T ss_pred EEEcCCCcchhchhhHHHHhcChhhhCCC-Ccccccce
Confidence 877765 66677777667999999985 56766554
No 115
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.62 E-value=0.024 Score=60.00 Aligned_cols=139 Identities=17% Similarity=0.213 Sum_probs=84.0
Q ss_pred CCCcCHHHHHHHHHHHHHHHHh-CCCeEEEecC-----CCcccccch-------hHHhhHHHHHHH--HHHhcCCCCEEE
Q psy11283 113 GGSLSSVHAEKICKIMDQAMLT-GAPIVGLNDS-----GGARIQEGV-------ESLAAYSSVFQR--NILASGVVPQIS 177 (314)
Q Consensus 113 gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~ds-----~Garl~eg~-------~~l~~~~~~~~~--~~~~~~~VP~is 177 (314)
--+++..-...+..+++.+.+. .+-+|.|.-+ .|+.+.+-. .....+.+.+.. ..+.....|+|+
T Consensus 28 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIA 107 (715)
T PRK11730 28 VNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVA 107 (715)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 3578888888899998887654 3556666543 344443211 001111111111 113456899999
Q ss_pred EEeCCCCccccccccCCCEEEEecCceeEEEc-----------cHhhhhh-----------hhcccCCccccCCchhhcc
Q psy11283 178 LILGPCAGGAVYSPAITDFTFMVEHSSYLFIT-----------GPDVIKS-----------VTNEDISQEELGGAKTHTS 235 (314)
Q Consensus 178 vv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~-----------GP~vv~~-----------~~ge~v~~~~lGGa~~h~~ 235 (314)
.|-|.|+|||......||++|+.+ ++++++. |...+.. .+|+.++.++ +.
T Consensus 108 av~G~a~GgG~~LAlacD~ria~~-~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~llltG~~~~A~e-------A~ 179 (715)
T PRK11730 108 AINGYALGGGCECVLATDYRVASP-DARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAED-------AL 179 (715)
T ss_pred EECCEeehHHHHHHHhCCEEEEcC-CCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHHHHcCCcCCHHH-------HH
Confidence 999999999988888899999987 4667651 1111111 1445555443 24
Q ss_pred ccCceeeEecCHH---HHHHHHHHHHh
Q psy11283 236 VSGVAHNAFSNDI---DAIQNVRHLLG 259 (314)
Q Consensus 236 ~~Gv~d~~~~de~---~a~~~ir~~l~ 259 (314)
..|++|.++++++ ++.+.++++..
T Consensus 180 ~~GLv~~vv~~~~l~~~a~~~a~~la~ 206 (715)
T PRK11730 180 KVGAVDAVVAPEKLQEAALALLKQAIA 206 (715)
T ss_pred HCCCCeEecCHHHHHHHHHHHHHHHhh
Confidence 6899999997643 44555555554
No 116
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=96.59 E-value=0.028 Score=54.61 Aligned_cols=127 Identities=18% Similarity=0.188 Sum_probs=78.6
Q ss_pred CCcCHHHHHHHHHHHHHHHHh-CCCeEEEecCC------Ccccccch-------hHHhhHHHHHHHH--HHhcCCCCEEE
Q psy11283 114 GSLSSVHAEKICKIMDQAMLT-GAPIVGLNDSG------GARIQEGV-------ESLAAYSSVFQRN--ILASGVVPQIS 177 (314)
Q Consensus 114 Gs~g~~~~~K~~r~~~~A~~~-~lPvV~l~ds~------Garl~eg~-------~~l~~~~~~~~~~--~~~~~~VP~is 177 (314)
-+++..-.+.+..+++.+... .+-+|.|.-++ |+.+.+-. .....+.+.+... .+....+|+|+
T Consensus 50 NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVIA 129 (360)
T TIGR03200 50 NSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVIC 129 (360)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 478888888999998877643 46677775433 33332210 0111122222221 13456799999
Q ss_pred EEeCCCCccccccccCCCEEEEecCceeEEEccH-----------hhhhh-----------hhcccCCccccCCchhhcc
Q psy11283 178 LILGPCAGGAVYSPAITDFTFMVEHSSYLFITGP-----------DVIKS-----------VTNEDISQEELGGAKTHTS 235 (314)
Q Consensus 178 vv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~GP-----------~vv~~-----------~~ge~v~~~~lGGa~~h~~ 235 (314)
.|-|.|+|||......||++|+.+ .+++++... ..+.. .+|+.++.++ +.
T Consensus 130 AVnG~AiGGGleLALaCDlrIAse-~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA~E-------A~ 201 (360)
T TIGR03200 130 RVNGMRIGGGQEIGMAADFTIAQD-LANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSAHK-------AK 201 (360)
T ss_pred EECCEeeeHHHHHHHhCCEEEEcC-CCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcHHH-------HH
Confidence 999999999988777899999987 466665221 11111 2444444433 24
Q ss_pred ccCceeeEecCHH
Q psy11283 236 VSGVAHNAFSNDI 248 (314)
Q Consensus 236 ~~Gv~d~~~~de~ 248 (314)
..|+++.++++++
T Consensus 202 ~~GLVd~VVp~~~ 214 (360)
T TIGR03200 202 RLGIIMDVVPALK 214 (360)
T ss_pred HcCChheecCchh
Confidence 6899999987654
No 117
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=96.56 E-value=0.02 Score=51.47 Aligned_cols=87 Identities=14% Similarity=0.151 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHh-CCCeEEE-ecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCccccccccCCC
Q psy11283 118 SVHAEKICKIMDQAMLT-GAPIVGL-NDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITD 195 (314)
Q Consensus 118 ~~~~~K~~r~~~~A~~~-~lPvV~l-~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D 195 (314)
....+-+.+.++.+.+. ++-.|.| .+|+|..+.+. ..+.+.+.. ..+...|+|+.+.|.|.|++.+....||
T Consensus 20 ~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~----~~~~~~l~~--~~~~~kpVia~v~g~a~s~gy~la~~aD 93 (211)
T cd07019 20 NVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTAS----EVIRAELAA--ARAAGKPVVVSAGGAAASGGYWISTPAN 93 (211)
T ss_pred ccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHH----HHHHHHHHH--HHhCCCCEEEEECCeehhHHHHHHHhCC
Confidence 33456777888888776 5555555 78888776331 122233332 2345789999999999999999888999
Q ss_pred EEEEecCceeEEEccH
Q psy11283 196 FTFMVEHSSYLFITGP 211 (314)
Q Consensus 196 ~vi~~~~~a~i~~~GP 211 (314)
+++|.+ ++.++..|.
T Consensus 94 ~i~a~~-~a~~gsiGv 108 (211)
T cd07019 94 YIVANP-STLTGSIGI 108 (211)
T ss_pred EEEEcC-CCEEEEeEE
Confidence 999987 577776663
No 118
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=96.54 E-value=0.044 Score=53.73 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=68.1
Q ss_pred ECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEecCC-----CcccccchhH---HhhHHHHHHH--
Q psy11283 97 VNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLT-GAPIVGLNDSG-----GARIQEGVES---LAAYSSVFQR-- 165 (314)
Q Consensus 97 I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~ds~-----Garl~eg~~~---l~~~~~~~~~-- 165 (314)
++|.-..|.-|++.. --++...-.+.+.++++.+... .+-+|.|.-++ |+.+.+-... -......+..
T Consensus 17 ~~~~v~~ItLnrP~~-~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 95 (379)
T PLN02874 17 EKGRVRVITLNRPRQ-LNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMY 95 (379)
T ss_pred EECCEEEEEECCCcc-ccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHHHH
Confidence 445444455555543 3588898999999999888654 45666665433 3433221000 0000111111
Q ss_pred ---HHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE
Q psy11283 166 ---NILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI 208 (314)
Q Consensus 166 ---~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~ 208 (314)
..+.....|+|+.|-|.|+|||......||++|+.+ ++++.+
T Consensus 96 ~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~-~a~f~~ 140 (379)
T PLN02874 96 WLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTE-KTVFAT 140 (379)
T ss_pred HHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeC-CeEEec
Confidence 123456799999999999999988777899999987 466655
No 119
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=96.47 E-value=0.012 Score=52.57 Aligned_cols=88 Identities=16% Similarity=0.140 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHh-CCC-eEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCccccccccCCC
Q psy11283 118 SVHAEKICKIMDQAMLT-GAP-IVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITD 195 (314)
Q Consensus 118 ~~~~~K~~r~~~~A~~~-~lP-vV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D 195 (314)
+...+.+.+.++.+.+. ++- ||.-.+|+|..+... ..+.+.+.. ......|+|+.+.|.|.|++.+....||
T Consensus 16 ~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~----~~i~~~i~~--~~~~~kpvia~v~g~~~s~g~~lA~aaD 89 (208)
T cd07023 16 GIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVAS----EEIYREIRR--LRKAKKPVVASMGDVAASGGYYIAAAAD 89 (208)
T ss_pred CCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHH----HHHHHHHHH--HHhcCCcEEEEECCcchhHHHHHHhhCC
Confidence 66777888888888655 344 444478888765321 122333322 2344789999999999999998888899
Q ss_pred EEEEecCceeEEEccHh
Q psy11283 196 FTFMVEHSSYLFITGPD 212 (314)
Q Consensus 196 ~vi~~~~~a~i~~~GP~ 212 (314)
.++|.+ ++.++..|.-
T Consensus 90 ~i~a~~-~s~~g~iG~~ 105 (208)
T cd07023 90 KIVANP-TTITGSIGVI 105 (208)
T ss_pred EEEECC-CCeEEeCcEE
Confidence 999987 5778777743
No 120
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=96.46 E-value=0.06 Score=57.07 Aligned_cols=94 Identities=20% Similarity=0.200 Sum_probs=62.1
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHhC-CCeEEEec-----CCCcccccch-------hH---Hhh-HHHHHHHHHHhcCCCC
Q psy11283 112 FGGSLSSVHAEKICKIMDQAMLTG-APIVGLND-----SGGARIQEGV-------ES---LAA-YSSVFQRNILASGVVP 174 (314)
Q Consensus 112 ~gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~d-----s~Garl~eg~-------~~---l~~-~~~~~~~~~~~~~~VP 174 (314)
.--+++..-.+.+.++++.+.+.. +=+|.|.- |.|+.+.+-. .. +.. ..+++.. .....+|
T Consensus 27 ~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~pkP 104 (714)
T TIGR02437 27 SVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNK--LEDLPVP 104 (714)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHH--HHhCCCC
Confidence 345788999999999998886544 44555543 2344443210 00 101 1122222 3456799
Q ss_pred EEEEEeCCCCccccccccCCCEEEEecCceeEEE
Q psy11283 175 QISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI 208 (314)
Q Consensus 175 ~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~ 208 (314)
+|+.|-|.|.|||......||++|+.+ .+++++
T Consensus 105 vIAai~G~alGGGleLalacD~ria~~-~a~fgl 137 (714)
T TIGR02437 105 TVAAINGIALGGGCECVLATDFRIADD-TAKIGL 137 (714)
T ss_pred EEEEECCeeecHHHHHHHhCCEEEEeC-CCEEec
Confidence 999999999999988777899999997 467766
No 121
>KOG1680|consensus
Probab=96.38 E-value=0.041 Score=51.32 Aligned_cols=139 Identities=12% Similarity=0.113 Sum_probs=85.0
Q ss_pred CCcCHHHHHHHHHHHHHHHHh-CCCeEEEecCCCccc-----ccchhHHhh---HHHHHHHHH-HhcCCCCEEEEEeCCC
Q psy11283 114 GSLSSVHAEKICKIMDQAMLT-GAPIVGLNDSGGARI-----QEGVESLAA---YSSVFQRNI-LASGVVPQISLILGPC 183 (314)
Q Consensus 114 Gs~g~~~~~K~~r~~~~A~~~-~lPvV~l~ds~Garl-----~eg~~~l~~---~~~~~~~~~-~~~~~VP~isvv~G~~ 183 (314)
-++.......+.+++....+. -.|+|.|.-++++.- .|-.....+ ....++..- ...-..|.|+.|.|.|
T Consensus 59 Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~KPvIaainG~A 138 (290)
T KOG1680|consen 59 NALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKKPVIAAINGFA 138 (290)
T ss_pred ccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccchhhhhhhcccceeEeeecee
Confidence 467777777776666655444 489999987665543 210000000 011111111 1235679999999999
Q ss_pred CccccccccCCCEEEEecCceeEEEccHhh-----------hhhh-----------hcccCCccccCCchhhccccCcee
Q psy11283 184 AGGAVYSPAITDFTFMVEHSSYLFITGPDV-----------IKSV-----------TNEDISQEELGGAKTHTSVSGVAH 241 (314)
Q Consensus 184 ~Gg~a~~~~~~D~vi~~~~~a~i~~~GP~v-----------v~~~-----------~ge~v~~~~lGGa~~h~~~~Gv~d 241 (314)
.|||.-..-+||+++|.+ ++.+++..+++ +..+ +|..++.++ +.+.|+++
T Consensus 139 lgGG~ELalmCDirva~~-~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~~~Aqe-------A~~~GlVn 210 (290)
T KOG1680|consen 139 LGGGLELALMCDIRVAGE-GAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRRLGAQE-------AKKIGLVN 210 (290)
T ss_pred eccchhhhhhcceEeccC-CCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCcccHHH-------HHhCCcee
Confidence 999999888999999987 57787754432 1111 333333332 24689999
Q ss_pred eEecCHH---HHHHHHHHHHhc
Q psy11283 242 NAFSNDI---DAIQNVRHLLGF 260 (314)
Q Consensus 242 ~~~~de~---~a~~~ir~~l~~ 260 (314)
.|++.++ +|++.++++.+.
T Consensus 211 ~Vvp~~~~l~eAv~l~~~Ia~~ 232 (290)
T KOG1680|consen 211 KVVPSGDALGEAVKLAEQIAKN 232 (290)
T ss_pred EeecchhHHHHHHHHHHHHHhC
Confidence 9998754 466666666654
No 122
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=96.32 E-value=0.065 Score=52.97 Aligned_cols=149 Identities=13% Similarity=0.154 Sum_probs=84.5
Q ss_pred EECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEec-----CCCcccccchh-----HHhhHHHHHH
Q psy11283 96 SVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLT-GAPIVGLND-----SGGARIQEGVE-----SLAAYSSVFQ 164 (314)
Q Consensus 96 ~I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~d-----s~Garl~eg~~-----~l~~~~~~~~ 164 (314)
.++|.-..|.-|.+.. --++...-...+.++++.+.+. .+-+|.|.- |+|..+.+-.. ......+.+.
T Consensus 42 e~~g~v~~ItLNRP~~-lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~ 120 (401)
T PLN02157 42 EGSGCSRTAILNRPPA-LNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFFS 120 (401)
T ss_pred EEECCEEEEEECCCCc-cCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHH
Confidence 3455444444555543 3588899999999888877654 445555543 23333322000 0000111221
Q ss_pred H-----HHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE-----------ccHhhhhhhhcc---c--CC
Q psy11283 165 R-----NILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI-----------TGPDVIKSVTNE---D--IS 223 (314)
Q Consensus 165 ~-----~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~-----------~GP~vv~~~~ge---~--v~ 223 (314)
. ..+..-.+|+|+.|-|.|.|||.-....||++|++++ +.+++ .|.-.+....|. . ++
T Consensus 121 ~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~-a~fa~PE~~iGl~Pd~G~s~~L~rl~G~~a~~L~LT 199 (401)
T PLN02157 121 SLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDR-TIFATPETIIGFHPDAGASFNLSHLPGRLGEYLGLT 199 (401)
T ss_pred HHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCC-CEEEChhhhcCCCCCccHHHHHHHhhhHHHHHHHHc
Confidence 1 1134567999999999999999988788999999874 55544 111111111111 1 12
Q ss_pred ccccCCchhhccccCceeeEecCHH
Q psy11283 224 QEELGGAKTHTSVSGVAHNAFSNDI 248 (314)
Q Consensus 224 ~~~lGGa~~h~~~~Gv~d~~~~de~ 248 (314)
-+.+.+.+. ...|+++.++++++
T Consensus 200 G~~i~A~eA--~~~GLv~~vVp~~~ 222 (401)
T PLN02157 200 GLKLSGAEM--LACGLATHYIRSEE 222 (401)
T ss_pred CCcCCHHHH--HHcCCceEEeCHhH
Confidence 333444443 46899999997753
No 123
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=96.30 E-value=0.054 Score=57.23 Aligned_cols=137 Identities=16% Similarity=0.234 Sum_probs=82.5
Q ss_pred CCCcCHHHHHHHHHHHHHHHHhC-CCeEEE-ec-----CCCcccccch-----hHHhh----HHHHHHHHHHhcCCCCEE
Q psy11283 113 GGSLSSVHAEKICKIMDQAMLTG-APIVGL-ND-----SGGARIQEGV-----ESLAA----YSSVFQRNILASGVVPQI 176 (314)
Q Consensus 113 gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l-~d-----s~Garl~eg~-----~~l~~----~~~~~~~~~~~~~~VP~i 176 (314)
.-+++....+.+.++++.+.... +=+|.| .. |+|+.+.+-. ..... ..+++.. +....+|+|
T Consensus 23 ~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~kPvI 100 (699)
T TIGR02440 23 MNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAE--LEALPIPVV 100 (699)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHH--HHhCCCCEE
Confidence 35788888888999988887554 334443 22 3455554310 01111 1122222 456789999
Q ss_pred EEEeCCCCccccccccCCCEEEEecC-ceeEEEc----------c-----Hhh------hh-hhhcccCCccccCCchhh
Q psy11283 177 SLILGPCAGGAVYSPAITDFTFMVEH-SSYLFIT----------G-----PDV------IK-SVTNEDISQEELGGAKTH 233 (314)
Q Consensus 177 svv~G~~~Gg~a~~~~~~D~vi~~~~-~a~i~~~----------G-----P~v------v~-~~~ge~v~~~~lGGa~~h 233 (314)
+.|.|.|+|||......||++|+.++ .+.+++. | |+. .+ ..+|+.++.++
T Consensus 101 AaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~a~e------- 173 (699)
T TIGR02440 101 AAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQ------- 173 (699)
T ss_pred EEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHH-------
Confidence 99999999999887778999999874 2455541 1 111 11 11455555443
Q ss_pred ccccCceeeEecCHHHHHHHHHHHHh
Q psy11283 234 TSVSGVAHNAFSNDIDAIQNVRHLLG 259 (314)
Q Consensus 234 ~~~~Gv~d~~~~de~~a~~~ir~~l~ 259 (314)
+...|++|.+++++ +.++.++++..
T Consensus 174 A~~~GLV~~vv~~~-~l~~~a~~~A~ 198 (699)
T TIGR02440 174 ALKLGLVDDVVPQS-ILLDTAVEMAL 198 (699)
T ss_pred HHhCCCCcEecChh-HHHHHHHHHHH
Confidence 24689999999764 34445555553
No 124
>PF03255 ACCA: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (6.4.1.2 from EC). It catalyses the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association []. The reaction involves two steps: Biotin carrier protein + ATP + HCO3 - -> Carboxybiotin carrier protein + ADP + Pi Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex; PDB: 2F9I_A 2F9Y_A.
Probab=96.23 E-value=0.0062 Score=51.45 Aligned_cols=34 Identities=26% Similarity=0.518 Sum_probs=24.8
Q ss_pred CCceeEecccC----CCceeEEEEEECCeEEEEEeeCC
Q psy11283 277 SREFFEIQPKY----AKNIIVGFARINGHSVGIVANQP 310 (314)
Q Consensus 277 ~~~f~E~~~~~----a~~vvtg~arl~G~~VGvvAn~p 310 (314)
.++|.|++++. .++||+|+|+++|+||-||+.+.
T Consensus 77 ~~df~ElhGDR~~~dD~AivgG~a~~~g~~V~vig~~K 114 (145)
T PF03255_consen 77 FDDFIELHGDRLFGDDPAIVGGIARFDGQPVTVIGQQK 114 (145)
T ss_dssp -EEEEE----SSS---TTEEEEEEEETTEEEEEEEE--
T ss_pred hCcCeEecCCccCCcCccceeeeEEECCEEEEEEEEec
Confidence 67999999985 38999999999999999999874
No 125
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=96.21 E-value=0.034 Score=50.02 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=60.9
Q ss_pred CCcCHHHHHHHHHHHHHHHHh-CCCeEEE-ecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCccccccc
Q psy11283 114 GSLSSVHAEKICKIMDQAMLT-GAPIVGL-NDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSP 191 (314)
Q Consensus 114 Gs~g~~~~~K~~r~~~~A~~~-~lPvV~l-~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~ 191 (314)
..++......+.+.++.|.+. ++-.|.| .+|+|..+. ....+.+.+.. ..+ ..|+|+.+-|.|.|++.+..
T Consensus 20 ~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~----~~~~l~~~l~~--~~~-~KpViA~v~g~a~s~gy~lA 92 (214)
T cd07022 20 ASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVA----GVFELADAIRA--ARA-GKPIVAFVNGLAASAAYWIA 92 (214)
T ss_pred CCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHH----HHHHHHHHHHH--Hhc-CCCEEEEECCchhhHHHHHH
Confidence 345566778888888888655 4655555 678764321 11122222222 123 79999999999999999998
Q ss_pred cCCCEEEEecCceeEEEccH
Q psy11283 192 AITDFTFMVEHSSYLFITGP 211 (314)
Q Consensus 192 ~~~D~vi~~~~~a~i~~~GP 211 (314)
..||.++|.+ ++.++..|.
T Consensus 93 ~~aD~i~a~~-~a~~g~iG~ 111 (214)
T cd07022 93 SAADRIVVTP-TAGVGSIGV 111 (214)
T ss_pred hcCCEEEEcC-CCeEEeeeE
Confidence 8999999986 577766663
No 126
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=96.21 E-value=0.025 Score=50.66 Aligned_cols=86 Identities=14% Similarity=0.112 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHh-C-CCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCccccccccCCCEE
Q psy11283 120 HAEKICKIMDQAMLT-G-APIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFT 197 (314)
Q Consensus 120 ~~~K~~r~~~~A~~~-~-lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~v 197 (314)
+.+.+.+.++.|.+. + ..||.-.+|+|..+. +..++...........|+++.+.|.|.+++.+....||.+
T Consensus 14 s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~-------~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i 86 (207)
T TIGR00706 14 SPEDFDKKIKRIKDDKSIKALLLRINSPGGTVV-------ASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMAADEI 86 (207)
T ss_pred CHHHHHHHHHHHhhCCCccEEEEEecCCCCCHH-------HHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhcCCEE
Confidence 356677788877754 3 357777888886542 1122222221222468999999999999999888899999
Q ss_pred EEecCceeEEEccHhh
Q psy11283 198 FMVEHSSYLFITGPDV 213 (314)
Q Consensus 198 i~~~~~a~i~~~GP~v 213 (314)
+|.+ ++.++..|+..
T Consensus 87 ~a~p-~a~vg~iGv~~ 101 (207)
T TIGR00706 87 VANP-GTITGSIGVIL 101 (207)
T ss_pred EECC-CCeEEeeeEEE
Confidence 9987 57777777543
No 127
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=96.18 E-value=0.0085 Score=61.47 Aligned_cols=146 Identities=14% Similarity=0.133 Sum_probs=85.5
Q ss_pred CCcCHHHHHHHHHHHHHHH-H-hCCCeEEEec------CCCcccccchh-------HHhhHH-HHHHH--HHHhcCCCCE
Q psy11283 114 GSLSSVHAEKICKIMDQAM-L-TGAPIVGLND------SGGARIQEGVE-------SLAAYS-SVFQR--NILASGVVPQ 175 (314)
Q Consensus 114 Gs~g~~~~~K~~r~~~~A~-~-~~lPvV~l~d------s~Garl~eg~~-------~l~~~~-~~~~~--~~~~~~~VP~ 175 (314)
-+++..-...+.++++.+. + ..+-+|.|.- |+|+.+.+-.. ...... +.... .......+|+
T Consensus 47 Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPv 126 (550)
T PRK08184 47 NSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKF 126 (550)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCE
Confidence 4788888888999888876 3 3455666643 33444432100 000001 11100 1123457999
Q ss_pred EEEEeCCCCccccccccCCCEEEEecC-ceeEEE-----cc--H------hhhh--h----------hhcccCCccccCC
Q psy11283 176 ISLILGPCAGGAVYSPAITDFTFMVEH-SSYLFI-----TG--P------DVIK--S----------VTNEDISQEELGG 229 (314)
Q Consensus 176 isvv~G~~~Gg~a~~~~~~D~vi~~~~-~a~i~~-----~G--P------~vv~--~----------~~ge~v~~~~lGG 229 (314)
|+.|-|.|+|||......||++|+.++ .+++++ .| | +++. . .+|+.++.+
T Consensus 127 IAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~Ae---- 202 (550)
T PRK08184 127 IAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGK---- 202 (550)
T ss_pred EEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHH----
Confidence 999999999999988888999999874 234432 11 1 1110 0 234444433
Q ss_pred chhhccccCceeeEecCH---HHHHHHHHHHHhcCCCCCC
Q psy11283 230 AKTHTSVSGVAHNAFSND---IDAIQNVRHLLGFLPMNNT 266 (314)
Q Consensus 230 a~~h~~~~Gv~d~~~~de---~~a~~~ir~~l~~lP~~~~ 266 (314)
+. ...|+++.+++++ +++.+.++++...-|.|..
T Consensus 203 -eA--~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~~~~~~ 239 (550)
T PRK08184 203 -RA--VDWRLVDEVVKPSKFDAKVAERAAELAAASDRPAD 239 (550)
T ss_pred -HH--HHcCCccEeeCHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 32 4689999999765 2455566776666555544
No 128
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=96.17 E-value=0.089 Score=55.95 Aligned_cols=94 Identities=19% Similarity=0.284 Sum_probs=60.6
Q ss_pred CCCcCHHHHHHHHHHHHHHHHhCCC--eEEEec-----CCCcccccch-----hHHh----hHHHHHHHHHHhcCCCCEE
Q psy11283 113 GGSLSSVHAEKICKIMDQAMLTGAP--IVGLND-----SGGARIQEGV-----ESLA----AYSSVFQRNILASGVVPQI 176 (314)
Q Consensus 113 gGs~g~~~~~K~~r~~~~A~~~~lP--vV~l~d-----s~Garl~eg~-----~~l~----~~~~~~~~~~~~~~~VP~i 176 (314)
--+++......+..+++.+.+..-. +|.+.- |+|+.+.+-. .... ...+++.. .....+|+|
T Consensus 35 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~--i~~~~kPvI 112 (737)
T TIGR02441 35 VNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFER--IEKSQKPIV 112 (737)
T ss_pred CCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHH--HHhCCCCEE
Confidence 3578899999999999988765433 233333 3445443210 0011 11122222 345789999
Q ss_pred EEEeCCCCccccccccCCCEEEEecCc-eeEEE
Q psy11283 177 SLILGPCAGGAVYSPAITDFTFMVEHS-SYLFI 208 (314)
Q Consensus 177 svv~G~~~Gg~a~~~~~~D~vi~~~~~-a~i~~ 208 (314)
+.|-|.|+|||....-.||++|+.++. +.+++
T Consensus 113 Aav~G~a~GgG~eLALacD~ria~~~a~a~fgl 145 (737)
T TIGR02441 113 AAISGSCLGGGLELALACHYRIATKDRKTLLGL 145 (737)
T ss_pred EEECCEeecHHHHHHHhCCEEEEcCCCCCeEec
Confidence 999999999998877789999999753 34544
No 129
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=96.13 E-value=0.12 Score=51.17 Aligned_cols=141 Identities=14% Similarity=0.183 Sum_probs=81.4
Q ss_pred EEEEEcccccCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEecCC-----Ccccccch--------hHHhhHHHHHHHH--
Q psy11283 103 FIFSQDFTVFGGSLSSVHAEKICKIMDQAMLT-GAPIVGLNDSG-----GARIQEGV--------ESLAAYSSVFQRN-- 166 (314)
Q Consensus 103 ~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~ds~-----Garl~eg~--------~~l~~~~~~~~~~-- 166 (314)
.|.-|.+. .--++...-...+.++++...+. .+-+|.|.-+| |..+.+-. .....+-+.++..
T Consensus 54 ~ItLNRP~-~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~ 132 (407)
T PLN02851 54 AAILNRPS-SLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVY 132 (407)
T ss_pred EEEECCCC-cCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 34445544 33589999999999999887654 55566665332 33321100 0001110111111
Q ss_pred HHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEc----c--Hhh-----hhhhh---ccc--CCccccCCc
Q psy11283 167 ILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFIT----G--PDV-----IKSVT---NED--ISQEELGGA 230 (314)
Q Consensus 167 ~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~----G--P~v-----v~~~~---ge~--v~~~~lGGa 230 (314)
.+..-..|+|+++-|.|+|||......||++|+++. +.+.+. | |.+ +.... +.. ++.+.+++.
T Consensus 133 ~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~-a~famPE~~iGl~PdvG~s~~L~rl~g~~g~~L~LTG~~i~a~ 211 (407)
T PLN02851 133 LQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDK-TVFAHPEVQMGFHPDAGASYYLSRLPGYLGEYLALTGQKLNGV 211 (407)
T ss_pred HHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCC-ceEecchhccCCCCCccHHHHHHHhcCHHHHHHHHhCCcCCHH
Confidence 133567999999999999999988888999999874 444440 0 111 11111 111 234445555
Q ss_pred hhhccccCceeeEecCH
Q psy11283 231 KTHTSVSGVAHNAFSND 247 (314)
Q Consensus 231 ~~h~~~~Gv~d~~~~de 247 (314)
+.+ ..|+++++++++
T Consensus 212 eA~--~~GLa~~~v~~~ 226 (407)
T PLN02851 212 EMI--ACGLATHYCLNA 226 (407)
T ss_pred HHH--HCCCceeecCHh
Confidence 544 589999999875
No 130
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=95.99 E-value=0.11 Score=54.93 Aligned_cols=149 Identities=15% Similarity=0.151 Sum_probs=86.1
Q ss_pred EEEEcccccCCCcCHHHHHHHHHHHHHHHHhC-CCeEEEec------CCCcccccc--h---hHHhhHHHHHHH--HHHh
Q psy11283 104 IFSQDFTVFGGSLSSVHAEKICKIMDQAMLTG-APIVGLND------SGGARIQEG--V---ESLAAYSSVFQR--NILA 169 (314)
Q Consensus 104 v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~d------s~Garl~eg--~---~~l~~~~~~~~~--~~~~ 169 (314)
+.-|.+.-.--+++..-.+.+..+++.+.+.. +-+|.|.- |.|+.+.+- . .....+.+.+.. ..+.
T Consensus 19 itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (708)
T PRK11154 19 ITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIE 98 (708)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHH
Confidence 33444422334788888888998888887543 44555532 344444321 0 000111111111 1235
Q ss_pred cCCCCEEEEEeCCCCccccccccCCCEEEEecCc-eeEEE-----------ccHhhh----------h-hhhcccCCccc
Q psy11283 170 SGVVPQISLILGPCAGGAVYSPAITDFTFMVEHS-SYLFI-----------TGPDVI----------K-SVTNEDISQEE 226 (314)
Q Consensus 170 ~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~-a~i~~-----------~GP~vv----------~-~~~ge~v~~~~ 226 (314)
...+|+|+.|-|.|+|||......||++|+.++. +++++ .|...+ + ..+|+.++.++
T Consensus 99 ~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A~~llltG~~i~a~e 178 (708)
T PRK11154 99 ALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQ 178 (708)
T ss_pred hCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHHHHHHHhCCcCCHHH
Confidence 6789999999999999998877789999999752 35543 111111 1 12555555543
Q ss_pred cCCchhhccccCceeeEecCHHHHHHHHHHHHhc
Q psy11283 227 LGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGF 260 (314)
Q Consensus 227 lGGa~~h~~~~Gv~d~~~~de~~a~~~ir~~l~~ 260 (314)
+...|++|.+++++ +.++.++++...
T Consensus 179 -------A~~~GLv~~vv~~~-~l~~~a~~~A~~ 204 (708)
T PRK11154 179 -------ALKLGLVDDVVPHS-ILLEVAVELAKK 204 (708)
T ss_pred -------HHHCCCCcEecChH-HHHHHHHHHHHh
Confidence 24689999999764 334455555533
No 131
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=95.89 E-value=0.013 Score=55.55 Aligned_cols=30 Identities=20% Similarity=0.553 Sum_probs=26.6
Q ss_pred ccCCCceeEEEEEECCeEEEEEeeCCccCC
Q psy11283 285 PKYAKNIIVGFARINGHSVGIVANQPKVAA 314 (314)
Q Consensus 285 ~~~a~~vvtg~arl~G~~VGvvAn~p~~~~ 314 (314)
...+.+||||+++|+|+||-|+|++..+++
T Consensus 52 ~~~~dGvV~G~G~I~Gr~v~v~a~D~tf~G 81 (301)
T PRK07189 52 PQFDDGVVVGKGTLDGRPVVVAAQEGRFMG 81 (301)
T ss_pred CCCCCcEEEEEEEECCEEEEEEEECCCccC
Confidence 335689999999999999999999998875
No 132
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=95.78 E-value=0.071 Score=54.81 Aligned_cols=154 Identities=13% Similarity=0.111 Sum_probs=91.4
Q ss_pred ECCEEEEEEEEcccccC------------CCcCHHHHHHHHHHHHHHHH--hCCCeEEEecCC------Ccccc--cchh
Q psy11283 97 VNGRTVFIFSQDFTVFG------------GSLSSVHAEKICKIMDQAML--TGAPIVGLNDSG------GARIQ--EGVE 154 (314)
Q Consensus 97 I~Gr~v~v~a~D~t~~g------------Gs~g~~~~~K~~r~~~~A~~--~~lPvV~l~ds~------Garl~--eg~~ 154 (314)
++|.-..|.-|.+..+- -++...-.+.+..+++.+.. ..+-+|.|.-.+ |+.+. +...
T Consensus 268 ~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~ 347 (550)
T PRK08184 268 RAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLAHKD 347 (550)
T ss_pred ccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhcccc
Confidence 34655566667665442 57889999999999988764 355566665433 23321 1000
Q ss_pred -----HH-hhHHHHHHHHHHhcCCCCEEEEEe-CCCCccc-cccccCCCEEEEe-------cCceeEEE-----------
Q psy11283 155 -----SL-AAYSSVFQRNILASGVVPQISLIL-GPCAGGA-VYSPAITDFTFMV-------EHSSYLFI----------- 208 (314)
Q Consensus 155 -----~l-~~~~~~~~~~~~~~~~VP~isvv~-G~~~Gg~-a~~~~~~D~vi~~-------~~~a~i~~----------- 208 (314)
.. ..+.+++.. +....+|+|+.|- |.|+||| .-....||++|+. + ++++++
T Consensus 348 ~~~~~~~~~~~~~~~~~--l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~-~a~f~~pe~~~Gl~p~~ 424 (550)
T PRK08184 348 HWLVRETRGYLRRTLKR--LDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDP-APAITLSALNFGLYPMV 424 (550)
T ss_pred hHHHHHHHHHHHHHHHH--HHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCC-CCEEECccccccCCCCC
Confidence 00 001112221 3456799999997 9999999 5555569999998 5 456655
Q ss_pred cc----Hhh-------hhh---hhcccCCccccCCchhhccccCceeeEecCHH---HHHHHHHHHHhc
Q psy11283 209 TG----PDV-------IKS---VTNEDISQEELGGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLLGF 260 (314)
Q Consensus 209 ~G----P~v-------v~~---~~ge~v~~~~lGGa~~h~~~~Gv~d~~~~de~---~a~~~ir~~l~~ 260 (314)
.| |+. .+. .+|+.++.++ +.+.|+++.++++++ ++.+.++++.+.
T Consensus 425 gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~e-------A~~~GLv~~vv~~~~l~~~a~~~a~~ia~~ 486 (550)
T PRK08184 425 NGLSRLARRFYGEPDPLAAVRAKIGQPLDADA-------AEELGLVTAAPDDIDWEDEVRIALEERASL 486 (550)
T ss_pred CcHHHhHHHhcChHHHHHHHHHHhCCcCCHHH-------HHHcCCcccccChHHHHHHHHHHHHHHHhC
Confidence 11 111 221 3666666554 256899999998753 344455555543
No 133
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=95.76 E-value=0.029 Score=48.36 Aligned_cols=90 Identities=13% Similarity=0.153 Sum_probs=64.3
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHhC--CCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCccccc
Q psy11283 112 FGGSLSSVHAEKICKIMDQAMLTG--APIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVY 189 (314)
Q Consensus 112 ~gGs~g~~~~~K~~r~~~~A~~~~--lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~ 189 (314)
..|.+++..++.+.+.+..+.... -|++..+||+|..+.++. .+... +.....|+++++.|.|.+++++
T Consensus 5 i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~--------~i~~~-i~~~~~~v~~~~~g~aaS~~~~ 75 (162)
T cd07013 5 LTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGM--------AIYDT-IKFIKADVVTIIDGLAASMGSV 75 (162)
T ss_pred EccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHH--------HHHHH-HHhcCCCceEEEEeehhhHHHH
Confidence 346778888899888888877653 699999999997754322 12222 2234579999999999999988
Q ss_pred cccCCC--EEEEecCceeEEEccH
Q psy11283 190 SPAITD--FTFMVEHSSYLFITGP 211 (314)
Q Consensus 190 ~~~~~D--~vi~~~~~a~i~~~GP 211 (314)
.+..+| ..++.+ ++.+.+..|
T Consensus 76 i~~a~~~g~r~~~p-~a~~~ih~~ 98 (162)
T cd07013 76 IAMAGAKGKRFILP-NAMMMIHQP 98 (162)
T ss_pred HHHcCCCCcEEEec-CEEEEEccC
Confidence 887788 456666 577766544
No 134
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=95.54 E-value=0.023 Score=51.38 Aligned_cols=164 Identities=21% Similarity=0.260 Sum_probs=101.7
Q ss_pred hcCCCCHHHHHHhhcCCCcceeecccccccccCcccccCCCCCCcEEEEEEEECCEEEEEEEEcccccCCCcCHHHHHHH
Q psy11283 45 NKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKI 124 (314)
Q Consensus 45 ~~g~l~arerI~~L~D~gsf~E~~~~~~~~~~~~~~~~~~~~~~gvVtG~G~I~Gr~v~v~a~D~t~~gGs~g~~~~~K~ 124 (314)
+--..|+.|.|+.|.|.- ..+.-|||.=.|.=+|.+..+..-|.++.|-+-+
T Consensus 42 AfrP~TV~Em~~Af~~Ar---------------------~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~g------- 93 (282)
T COG0447 42 AFRPKTVDEMIDAFADAR---------------------DDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGG------- 93 (282)
T ss_pred cCCCccHHHHHHHHHhhh---------------------cCCCccEEEEecCCCCCeeeecCCCceecccCCC-------
Confidence 334567788888777641 1233466655555678888888888887764322
Q ss_pred HHHHHHHHHhCCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCce
Q psy11283 125 CKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSS 204 (314)
Q Consensus 125 ~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a 204 (314)
+..+..+|-+.+.| .-+++ ..--.|+|++|.|-+.|||-..-..||.+|+.++ +
T Consensus 94 -----Y~~d~~~~rLnvLd---------------lQrlI-----R~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~n-A 147 (282)
T COG0447 94 -----YVDDDGIPRLNVLD---------------LQRLI-----RTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADN-A 147 (282)
T ss_pred -----ccCCccCcccchhh---------------HHHHH-----HhCCcceEEEEeeEeccCccEEEEEeeeeeehhc-c
Confidence 12222333211111 11222 2234699999999999999888888999999985 8
Q ss_pred eEEEccHhhh-----------hhhhcccCCcc--ccC---CchhhccccCceeeEecCH---HHHHHHHHHHHhcCCC
Q psy11283 205 YLFITGPDVI-----------KSVTNEDISQE--ELG---GAKTHTSVSGVAHNAFSND---IDAIQNVRHLLGFLPM 263 (314)
Q Consensus 205 ~i~~~GP~vv-----------~~~~ge~v~~~--~lG---Ga~~h~~~~Gv~d~~~~de---~~a~~~ir~~l~~lP~ 263 (314)
.++-+||.|= ....|++-..| -|+ .++ .+...|.+.-|++-+ ++.+++.+++|..-|.
T Consensus 148 ~FgQTgp~VGSFD~G~Gs~ylar~VGqKkArEIwfLcR~Y~A~-eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~ 224 (282)
T COG0447 148 IFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAE-EALDMGLVNTVVPHADLEKETVQWAREMLAKSPT 224 (282)
T ss_pred hhcCCCCCcccccCcccHHHHHHHhhhhhhHHhhhhhhhccHH-HHHhcCceeeeccHHHHHHHHHHHHHHHHhcChH
Confidence 8999999772 22223221111 000 011 134679999888654 5899999999987664
No 135
>KOG0016|consensus
Probab=95.53 E-value=0.24 Score=45.88 Aligned_cols=156 Identities=15% Similarity=0.240 Sum_probs=97.7
Q ss_pred EECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCcccccch------h---------HHhh--
Q psy11283 96 SVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGV------E---------SLAA-- 158 (314)
Q Consensus 96 ~I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~------~---------~l~~-- 158 (314)
++||-..++.--++..+ -++......-+.|+++.|...+-=.+.+.-+.|-..-.|. . +...
T Consensus 13 ~~~g~~~I~~~~~Pkk~-Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~~~~~~~ 91 (266)
T KOG0016|consen 13 RENGPFFIALNIRPKKK-NALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANEESDKASK 91 (266)
T ss_pred ecCCcEEEEecCCCccc-ccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcccccchhhHH
Confidence 34554444444366655 4788889999999999998887645555444332111110 0 0000
Q ss_pred HHHHH--HHHHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE---------------ccHhhhhh-----
Q psy11283 159 YSSVF--QRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI---------------TGPDVIKS----- 216 (314)
Q Consensus 159 ~~~~~--~~~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~---------------~GP~vv~~----- 216 (314)
....+ ...+...-.-|.|+.|.||+.|-++-..++||+|++.+ .+++-. +.|..+-.
T Consensus 92 ~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~D-ka~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A~E 170 (266)
T KOG0016|consen 92 FVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASD-KAWFQTPFAKLGQSPEGCSSVTLPKIMGSASANE 170 (266)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEecc-ceEEeccchhcCCCCCcceeeeehHhhchhhHHH
Confidence 01111 11223456789999999999999999999999999975 443221 33433211
Q ss_pred --hhcccCCccccCCchhhccccCceeeEecCH---HHHHHHHHHHHhc
Q psy11283 217 --VTNEDISQEELGGAKTHTSVSGVAHNAFSND---IDAIQNVRHLLGF 260 (314)
Q Consensus 217 --~~ge~v~~~~lGGa~~h~~~~Gv~d~~~~de---~~a~~~ir~~l~~ 260 (314)
..|++++..++ ..+|+++.+..++ ++++..++++..+
T Consensus 171 ~ll~~~kltA~Ea-------~~~glVskif~~~tf~~~v~~~ikq~s~l 212 (266)
T KOG0016|consen 171 MLLFGEKLTAQEA-------CEKGLVSKIFPAETFNEEVLKKIKQYSKL 212 (266)
T ss_pred HHHhCCcccHHHH-------HhcCchhhhcChHHHHHHHHHHHHHHhcC
Confidence 14566766554 3588999998875 4788999999883
No 136
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=95.38 E-value=0.14 Score=52.57 Aligned_cols=137 Identities=13% Similarity=0.121 Sum_probs=82.6
Q ss_pred CCcCHHHHHHHHHHHHHHHH--hCCCeEEEecCC------Cccccc-ch-h-----H-HhhHHHHHHHHHHhcCCCCEEE
Q psy11283 114 GSLSSVHAEKICKIMDQAML--TGAPIVGLNDSG------GARIQE-GV-E-----S-LAAYSSVFQRNILASGVVPQIS 177 (314)
Q Consensus 114 Gs~g~~~~~K~~r~~~~A~~--~~lPvV~l~ds~------Garl~e-g~-~-----~-l~~~~~~~~~~~~~~~~VP~is 177 (314)
-++...-.+.+..+++.+.+ ..+=+|.|.-.+ |+.+.+ .. . . +....+++.. +....+|+|+
T Consensus 293 Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~kpviA 370 (546)
T TIGR03222 293 NWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLAR--LDVSSRSLFA 370 (546)
T ss_pred CcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHH--HHcCCCCEEE
Confidence 57888888999988888863 456666665432 333321 00 0 0 0001112222 3456799999
Q ss_pred EE-eCCCCccc-cccccCCCEEEE-------ecCceeEEE-----------ccH----hhh-------h---hhhcccCC
Q psy11283 178 LI-LGPCAGGA-VYSPAITDFTFM-------VEHSSYLFI-----------TGP----DVI-------K---SVTNEDIS 223 (314)
Q Consensus 178 vv-~G~~~Gg~-a~~~~~~D~vi~-------~~~~a~i~~-----------~GP----~vv-------~---~~~ge~v~ 223 (314)
.| -|.|+||| .-....||++|+ .+ ++++++ .|. +.+ + ..+|+.++
T Consensus 371 av~~G~a~GgG~~eLalacD~~ia~~~~~~~~~-~a~f~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~ 449 (546)
T TIGR03222 371 LIEPGSCFAGTLAELAFAADRSYMLAFPDNNDP-EPAITLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALD 449 (546)
T ss_pred EECCCeEeHHHHHHHHHhCceeeecCCCCCCCC-CCEEeCCccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCC
Confidence 99 89999999 766667999999 65 466655 122 111 1 23455555
Q ss_pred ccccCCchhhccccCceeeEecCHH---HHHHHHHHHHhc
Q psy11283 224 QEELGGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLLGF 260 (314)
Q Consensus 224 ~~~lGGa~~h~~~~Gv~d~~~~de~---~a~~~ir~~l~~ 260 (314)
.++ +...|+++.++++++ ++.+.++++.+.
T Consensus 450 A~e-------A~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 482 (546)
T TIGR03222 450 AEE-------AERLGLVTAAPDDIDWEDEIRIALEERASF 482 (546)
T ss_pred HHH-------HHHcCCcccccCchHHHHHHHHHHHHHHhc
Confidence 443 246899999987743 444455555544
No 137
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=95.13 E-value=0.041 Score=49.48 Aligned_cols=91 Identities=14% Similarity=0.144 Sum_probs=67.5
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHh--CCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCccccc
Q psy11283 112 FGGSLSSVHAEKICKIMDQAMLT--GAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVY 189 (314)
Q Consensus 112 ~gGs~g~~~~~K~~r~~~~A~~~--~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~ 189 (314)
.+|.+++..+..+.+.+..+... .-|++..++|+|..+.++.. +... +.+...|+++++.|.|.+.+++
T Consensus 40 l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~--------I~d~-i~~~~~~v~t~~~G~aaSaa~l 110 (207)
T PRK12553 40 LGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDA--------IYDT-IQFIRPDVQTVCTGQAASAGAV 110 (207)
T ss_pred EcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHH--------HHHH-HHhcCCCcEEEEEeehhhHHHH
Confidence 45778889999998888888765 47999999999977644322 2222 2334579999999999998888
Q ss_pred cccCCC--EEEEecCceeEEEccHh
Q psy11283 190 SPAITD--FTFMVEHSSYLFITGPD 212 (314)
Q Consensus 190 ~~~~~D--~vi~~~~~a~i~~~GP~ 212 (314)
.+..+| .++|.+ ++.+.+..|.
T Consensus 111 I~~ag~~~~R~~~p-~s~imiH~p~ 134 (207)
T PRK12553 111 LLAAGTPGKRFALP-NARILIHQPS 134 (207)
T ss_pred HHHcCCcCcEEECC-CchhhhcCcc
Confidence 777777 478887 5778777664
No 138
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=95.12 E-value=0.35 Score=47.50 Aligned_cols=109 Identities=15% Similarity=0.157 Sum_probs=65.6
Q ss_pred CCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHh-CCCeEEEecCC-----CcccccchhH-----HhhHHHHHH--
Q psy11283 98 NGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLT-GAPIVGLNDSG-----GARIQEGVES-----LAAYSSVFQ-- 164 (314)
Q Consensus 98 ~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~-~lPvV~l~ds~-----Garl~eg~~~-----l~~~~~~~~-- 164 (314)
+|.-..|.-|.+. .--++...-...+.++++.+.+. .+-+|.|.-++ |..+.+-... .......|.
T Consensus 16 ~~~i~~ItLnRP~-~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~ 94 (381)
T PLN02988 16 KSSVRILTLNRPK-QLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDE 94 (381)
T ss_pred ECCEEEEEECCCC-ccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHH
Confidence 3433334445544 33578888888888888877544 45566665433 3333221000 000011121
Q ss_pred ---HHHHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE
Q psy11283 165 ---RNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI 208 (314)
Q Consensus 165 ---~~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~ 208 (314)
......-..|+|++|-|.|+|||......||++|+.++ +++.+
T Consensus 95 ~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~-a~f~m 140 (381)
T PLN02988 95 YMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATEN-TVFAM 140 (381)
T ss_pred HHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCC-cEEeC
Confidence 11234567899999999999999888888999999874 55554
No 139
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=94.61 E-value=0.19 Score=45.37 Aligned_cols=90 Identities=17% Similarity=0.210 Sum_probs=59.8
Q ss_pred CcCHHHHHHHHHHHHHHHHh-CCCeEEE-ecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCcccccccc
Q psy11283 115 SLSSVHAEKICKIMDQAMLT-GAPIVGL-NDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPA 192 (314)
Q Consensus 115 s~g~~~~~K~~r~~~~A~~~-~lPvV~l-~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~ 192 (314)
.......+.+.+.++.|.+. ++-.|.| .||+|... ..+..+.+.+.. ......|+|+.+.+ +.+|++|...
T Consensus 25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~----~~~~el~~~i~~--~~~~~kpVia~~~~-~~sggy~las 97 (222)
T cd07018 25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGL----AKLEELRQALER--FRASGKPVIAYADG-YSQGQYYLAS 97 (222)
T ss_pred CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCH----HHHHHHHHHHHH--HHHhCCeEEEEeCC-CCchhhhhhh
Confidence 34456677888888888766 4554444 57877632 112223333333 12356899999886 7777777778
Q ss_pred CCCEEEEecCceeEEEccHh
Q psy11283 193 ITDFTFMVEHSSYLFITGPD 212 (314)
Q Consensus 193 ~~D~vi~~~~~a~i~~~GP~ 212 (314)
.||.++|.+ ++.+++.|..
T Consensus 98 aad~I~a~p-~~~vg~iGv~ 116 (222)
T cd07018 98 AADEIYLNP-SGSVELTGLS 116 (222)
T ss_pred hCCEEEECC-CceEEeeccc
Confidence 899999976 6888888853
No 140
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=94.61 E-value=0.016 Score=54.25 Aligned_cols=34 Identities=29% Similarity=0.513 Sum_probs=30.9
Q ss_pred CCceeEecccCC----CceeEEEEEECCeEEEEEeeCC
Q psy11283 277 SREFFEIQPKYA----KNIIVGFARINGHSVGIVANQP 310 (314)
Q Consensus 277 ~~~f~E~~~~~a----~~vvtg~arl~G~~VGvvAn~p 310 (314)
..+|+|+.++.. +++|.|+||++|+||-||..|.
T Consensus 79 ~~df~eL~GDR~f~dD~Aivgglar~~G~pv~vIG~qK 116 (317)
T COG0825 79 FTDFVELHGDRAFADDPAIVGGLARFGGQPVVVIGHQK 116 (317)
T ss_pred HhHHHHhcCccccCcChhheeeeeeECCeeEEEEeeec
Confidence 789999999853 8999999999999999999885
No 141
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=94.57 E-value=0.063 Score=50.80 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=25.5
Q ss_pred CCCceeEEEEEECCeEEEEEeeCCccCC
Q psy11283 287 YAKNIIVGFARINGHSVGIVANQPKVAA 314 (314)
Q Consensus 287 ~a~~vvtg~arl~G~~VGvvAn~p~~~~ 314 (314)
.+.+||||+++|+|++|.|+|++..+++
T Consensus 119 ~~dgVVtG~G~I~Gr~v~v~a~Dftf~g 146 (296)
T CHL00174 119 LTDAVQTGIGQLNGIPVALGVMDFQFMG 146 (296)
T ss_pred CCccEEEEEEEECCEEEEEEEECCcccc
Confidence 3578999999999999999999998875
No 142
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=94.52 E-value=0.13 Score=46.00 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=65.2
Q ss_pred ccCCCcCHHHHHHHHHHHHHHHHh--CCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCcccc
Q psy11283 111 VFGGSLSSVHAEKICKIMDQAMLT--GAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAV 188 (314)
Q Consensus 111 ~~gGs~g~~~~~K~~r~~~~A~~~--~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a 188 (314)
+.+|.++...++.+.+-+...... .-|+..++||+|..+.+|.. +... +.....|+++++.|.|.+.++
T Consensus 35 ~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g~~--------I~d~-i~~~~~~v~t~~~G~aaS~a~ 105 (200)
T PRK00277 35 FLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLA--------IYDT-MQFIKPDVSTICIGQAASMGA 105 (200)
T ss_pred EECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHHHH--------HHHH-HHhcCCCEEEEEEeEeccHHH
Confidence 346888888888887777766644 46899999999977654322 2222 233457999999999999888
Q ss_pred ccccC--CCEEEEecCceeEEEccHh
Q psy11283 189 YSPAI--TDFTFMVEHSSYLFITGPD 212 (314)
Q Consensus 189 ~~~~~--~D~vi~~~~~a~i~~~GP~ 212 (314)
+.+.. .+..+|.+ ++.+.+.-|.
T Consensus 106 ~I~~ag~~~~r~~~p-~s~imih~p~ 130 (200)
T PRK00277 106 FLLAAGAKGKRFALP-NSRIMIHQPL 130 (200)
T ss_pred HHHhcCCCCCEEEcC-CceEEeccCc
Confidence 76543 35688887 5778776553
No 143
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=94.29 E-value=0.058 Score=46.85 Aligned_cols=90 Identities=19% Similarity=0.209 Sum_probs=66.4
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHhC--CCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCccccc
Q psy11283 112 FGGSLSSVHAEKICKIMDQAMLTG--APIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVY 189 (314)
Q Consensus 112 ~gGs~g~~~~~K~~r~~~~A~~~~--lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~ 189 (314)
+.|.+.+..+..+...+..+...+ -|++..++|+|..+.++.. +... +.....|+.+++.|-|.+.+++
T Consensus 14 i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~--------i~~~-l~~~~~~v~t~~~g~aaS~~~~ 84 (171)
T cd07017 14 LGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLA--------IYDT-MQYIKPPVSTICLGLAASMGAL 84 (171)
T ss_pred EcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHH--------HHHH-HHhcCCCEEEEEEeEehhHHHH
Confidence 457777888888888888887653 6899999999987654322 2222 2233689999999999999998
Q ss_pred cccCCC--EEEEecCceeEEEccH
Q psy11283 190 SPAITD--FTFMVEHSSYLFITGP 211 (314)
Q Consensus 190 ~~~~~D--~vi~~~~~a~i~~~GP 211 (314)
.+..+| .++|.+ ++.+.+..|
T Consensus 85 i~~~g~~~~r~~~~-~a~~~~h~~ 107 (171)
T cd07017 85 LLAAGTKGKRYALP-NSRIMIHQP 107 (171)
T ss_pred HHHcCCCCCEEEcc-chHHHHcCC
Confidence 888888 788887 466655554
No 144
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=94.03 E-value=0.35 Score=46.29 Aligned_cols=85 Identities=19% Similarity=0.164 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHhC--CCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCccccccccCCCE
Q psy11283 119 VHAEKICKIMDQAMLTG--APIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDF 196 (314)
Q Consensus 119 ~~~~K~~r~~~~A~~~~--lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~ 196 (314)
.+.+.+...++.+.... -+||..+||||...... ..+.+.+... ...+ |+++.+-+-|..||+|..+-+|.
T Consensus 80 ~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as----~~i~~~l~~l--~~~~-PV~v~v~~~AASGGY~IA~aAd~ 152 (317)
T COG0616 80 IGGDDIEEILRAARADPSVKAVVLRINSPGGSVVAS----ELIARALKRL--RAKK-PVVVSVGGYAASGGYYIALAADK 152 (317)
T ss_pred ccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHH----HHHHHHHHHH--hhcC-CEEEEECCeecchhhhhhccCCE
Confidence 33444444555554433 68999999999764311 1233334332 2333 99999999999999999989999
Q ss_pred EEEecCceeEEEccH
Q psy11283 197 TFMVEHSSYLFITGP 211 (314)
Q Consensus 197 vi~~~~~a~i~~~GP 211 (314)
++|.+ ++.++--|+
T Consensus 153 I~a~p-~si~GSIGV 166 (317)
T COG0616 153 IVADP-SSITGSIGV 166 (317)
T ss_pred EEecC-Cceeeecee
Confidence 99987 565555443
No 145
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=93.87 E-value=0.31 Score=50.49 Aligned_cols=81 Identities=12% Similarity=0.130 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHhC--CCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCccccccccCCCE
Q psy11283 119 VHAEKICKIMDQAMLTG--APIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDF 196 (314)
Q Consensus 119 ~~~~K~~r~~~~A~~~~--lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~ 196 (314)
...+.+.+.++.|.+.. -.||.-+||+|..... ...+.+.+.. ......|+|+.+.|-|.+||+|....||.
T Consensus 329 ~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~a----se~i~~~i~~--~~~~gKPVva~~~g~aaSggY~iA~aaD~ 402 (584)
T TIGR00705 329 TGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFA----SEIIRRELAR--AQARGKPVIVSMGAMAASGGYWIASAADY 402 (584)
T ss_pred cCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHH----HHHHHHHHHH--HHhCCCcEEEEECCccccHHHHHHHhCCE
Confidence 34566777788777664 3688889999865321 1111122211 12345899999999999999999889999
Q ss_pred EEEecCceeE
Q psy11283 197 TFMVEHSSYL 206 (314)
Q Consensus 197 vi~~~~~a~i 206 (314)
++|.+. +.+
T Consensus 403 I~a~p~-t~~ 411 (584)
T TIGR00705 403 IVASPN-TIT 411 (584)
T ss_pred EEECCC-Cee
Confidence 999874 433
No 146
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=93.21 E-value=0.29 Score=43.65 Aligned_cols=89 Identities=16% Similarity=0.135 Sum_probs=59.8
Q ss_pred CCCcCHHHHHHHHHHHHHHHH-h-CCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCcccccc
Q psy11283 113 GGSLSSVHAEKICKIMDQAML-T-GAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYS 190 (314)
Q Consensus 113 gGs~g~~~~~K~~r~~~~A~~-~-~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~ 190 (314)
.|.+++..+..+.+.+..+.. . .-||+..+||+|..+.+|.. +... +..-..|+++++.|.+.+.|++.
T Consensus 29 ~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~a--------I~d~-i~~~~~~V~t~v~G~AaSaaslI 99 (197)
T PRK14512 29 AGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFA--------IFNM-IRFVKPKVFTIGVGLVASAAALI 99 (197)
T ss_pred CCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHH--------HHHH-HHhCCCCEEEEEEeeeHhHHHHH
Confidence 356667777777777766654 3 47999999999987654322 2222 23356799999999999988887
Q ss_pred ccCCCE--EEEecCceeEEEccH
Q psy11283 191 PAITDF--TFMVEHSSYLFITGP 211 (314)
Q Consensus 191 ~~~~D~--vi~~~~~a~i~~~GP 211 (314)
+..+|. .++.+ ++++.+.-|
T Consensus 100 l~ag~~~~R~~~p-~s~imiHqP 121 (197)
T PRK14512 100 FLAAKKESRFSLP-NARYLLHQP 121 (197)
T ss_pred HhcCCcCceeECC-CCcEEEEcC
Confidence 766653 56665 455655444
No 147
>PRK11778 putative inner membrane peptidase; Provisional
Probab=93.12 E-value=0.44 Score=45.93 Aligned_cols=82 Identities=18% Similarity=0.136 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCccccccccCCCEEEEec
Q psy11283 122 EKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVE 201 (314)
Q Consensus 122 ~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~ 201 (314)
+.+..+++.|... --||.-+||||..+... + .....+.. ....++|+++.+-+-|..|++|..+.||.+++.|
T Consensus 111 e~i~a~l~~A~~~-~aVvLridSpGG~v~~s-~---~a~~~l~~--lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P 183 (330)
T PRK11778 111 EEITAILAVAKPG-DEVLLRLESPGGVVHGY-G---LAASQLQR--LRDAGIPLTVAVDKVAASGGYMMACVADKIIAAP 183 (330)
T ss_pred HHHHHHHHhccCC-CeEEEEEeCCCCchhHH-H---HHHHHHHH--HHhcCCCEEEEECCchhhHHHHHHHhCCEEEECC
Confidence 3444445555433 34888899999876321 0 01111222 2345789999988888888888888999999987
Q ss_pred CceeEEEccH
Q psy11283 202 HSSYLFITGP 211 (314)
Q Consensus 202 ~~a~i~~~GP 211 (314)
.+.++..|-
T Consensus 184 -~a~vGSIGV 192 (330)
T PRK11778 184 -FAIVGSIGV 192 (330)
T ss_pred -CCeEEeeee
Confidence 567777663
No 148
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=92.44 E-value=0.19 Score=47.12 Aligned_cols=32 Identities=25% Similarity=0.563 Sum_probs=28.9
Q ss_pred ecccCCCceeEEEEEECCeEEEEEeeCCccCC
Q psy11283 283 IQPKYAKNIIVGFARINGHSVGIVANQPKVAA 314 (314)
Q Consensus 283 ~~~~~a~~vvtg~arl~G~~VGvvAn~p~~~~ 314 (314)
.++.++.+||||+++|+|+||-|++++..+++
T Consensus 41 ~~~~~~dgvV~G~G~I~Gr~v~v~a~D~t~~G 72 (274)
T TIGR03133 41 IVPQFDDGVVVGRGTIDGKPVVVAAQEGRFQG 72 (274)
T ss_pred ccCCCCCeEEEEEEEECCEEEEEEEECCCccC
Confidence 46677899999999999999999999998875
No 149
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=92.19 E-value=0.52 Score=41.81 Aligned_cols=91 Identities=15% Similarity=0.136 Sum_probs=59.6
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHh--CCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCccccc
Q psy11283 112 FGGSLSSVHAEKICKIMDQAMLT--GAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVY 189 (314)
Q Consensus 112 ~gGs~g~~~~~K~~r~~~~A~~~--~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~ 189 (314)
++|.+....+..+..-+...... .-|++..++|+|..+.++.. ++.. +..-..|+.+++.|-|.+.+++
T Consensus 31 l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~--------I~d~-l~~~~~~v~t~~~G~AaSaasl 101 (191)
T TIGR00493 31 LSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLA--------IYDT-MQFIKPDVSTICIGQAASMGAF 101 (191)
T ss_pred EccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHH--------HHHH-HHhcCCCEEEEEEEeeccHHHH
Confidence 35666666777766555544432 47899999999987654332 2222 2333467888889999887776
Q ss_pred cccC--CCEEEEecCceeEEEccHh
Q psy11283 190 SPAI--TDFTFMVEHSSYLFITGPD 212 (314)
Q Consensus 190 ~~~~--~D~vi~~~~~a~i~~~GP~ 212 (314)
.+.. .+.++|.+ ++.+.+.-|.
T Consensus 102 I~~aG~~~~r~~~p-~s~imiH~p~ 125 (191)
T TIGR00493 102 LLSAGAKGKRFSLP-NSRIMIHQPL 125 (191)
T ss_pred HHhcCCCCcEEecC-CceEEEecCc
Confidence 5543 44678887 5788776664
No 150
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=91.26 E-value=0.7 Score=41.26 Aligned_cols=91 Identities=14% Similarity=0.125 Sum_probs=64.6
Q ss_pred ccCCCcCHHHHHHHHHHHHHHHHh--CCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCcccc
Q psy11283 111 VFGGSLSSVHAEKICKIMDQAMLT--GAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAV 188 (314)
Q Consensus 111 ~~gGs~g~~~~~K~~r~~~~A~~~--~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a 188 (314)
|++|.+.+..+..++.-+.+-... .-|+...++|+|..+.+|.. ++.. +..-..|+.+++.|-+.+.++
T Consensus 29 fl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~a--------Iyd~-m~~~~~~V~t~~~G~AaS~As 99 (196)
T PRK12551 29 FLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLG--------IFDT-MQHVKPDVHTVCVGLAASMGA 99 (196)
T ss_pred EECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHH--------HHHH-HHhcCCCEEEEEEEEehhHHH
Confidence 567889999999887766655433 47999999999987765432 2222 234467899999999998888
Q ss_pred ccccCCCE--EEEecCceeEEEccH
Q psy11283 189 YSPAITDF--TFMVEHSSYLFITGP 211 (314)
Q Consensus 189 ~~~~~~D~--vi~~~~~a~i~~~GP 211 (314)
..+..+|. .+|.+ ++++.+--|
T Consensus 100 lIl~aG~~~~R~~~p-~a~iMIHqP 123 (196)
T PRK12551 100 FLLCAGAKGKRSSLQ-HSRIMIHQP 123 (196)
T ss_pred HHHhCCCCCceecCC-CCEEEEecC
Confidence 76665554 56776 577766555
No 151
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=91.14 E-value=0.31 Score=42.46 Aligned_cols=90 Identities=19% Similarity=0.260 Sum_probs=60.9
Q ss_pred cCCCcCHHHHHHHHHHHHHH--HHhCCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCccccc
Q psy11283 112 FGGSLSSVHAEKICKIMDQA--MLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVY 189 (314)
Q Consensus 112 ~gGs~g~~~~~K~~r~~~~A--~~~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~ 189 (314)
+.|.+.+..+..+..-+... ....-|+..+++|+|..+.++.. +... +.....|+.+++.|.|.+.+++
T Consensus 21 l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~--------i~~~-i~~~~~~v~t~~~G~aaSaa~~ 91 (182)
T PF00574_consen 21 LNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLA--------IYDA-IRSSKAPVTTVVLGLAASAATL 91 (182)
T ss_dssp EESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHH--------HHHH-HHHSSSEEEEEEEEEEETHHHH
T ss_pred ECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHH--------HHHH-HHhcCCCeEEEEeCccccceeh
Confidence 46788888888877654433 33457899999999977544322 2222 3345789999999999988888
Q ss_pred cccCCCE--EEEecCceeEEEccH
Q psy11283 190 SPAITDF--TFMVEHSSYLFITGP 211 (314)
Q Consensus 190 ~~~~~D~--vi~~~~~a~i~~~GP 211 (314)
.+..++. .+|.+ .+.+.+--|
T Consensus 92 i~~ag~~~~R~~~~-~s~~m~H~p 114 (182)
T PF00574_consen 92 IFLAGDKGKRYASP-NSRFMIHQP 114 (182)
T ss_dssp HHHTSSTTTEEE-T-T-EEEES-C
T ss_pred hhhcCCcCceeeee-cCEEEeecc
Confidence 7777776 57877 466766554
No 152
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=90.57 E-value=0.62 Score=43.65 Aligned_cols=88 Identities=10% Similarity=0.055 Sum_probs=65.1
Q ss_pred CCcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCccccccccC
Q psy11283 114 GSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAI 193 (314)
Q Consensus 114 Gs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~~ 193 (314)
..+.....+.+.|.++.+.+.+ |+..+.+|+|..+.. -.++++.+. +-..|+.++|-..|..+|++..-.
T Consensus 70 ~~I~i~dse~v~raI~~~~~~~-~IdLii~TpGG~v~A----A~~I~~~l~-----~~~~~v~v~VP~~A~SAGTlIALa 139 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPKDK-PIDLIIHTPGGLVDA----AEQIARALR-----EHPAKVTVIVPHYAMSAGTLIALA 139 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCCCC-ceEEEEECCCCcHHH----HHHHHHHHH-----hCCCCEEEEECcccccHHHHHHHh
Confidence 3566778889999999997764 999999999987531 123333332 345789999999999999988777
Q ss_pred CCEEEEecCceeEEEccHh
Q psy11283 194 TDFTFMVEHSSYLFITGPD 212 (314)
Q Consensus 194 ~D~vi~~~~~a~i~~~GP~ 212 (314)
||.++|.+ .+.++-.-|.
T Consensus 140 ADeIvM~p-~a~LGpiDPq 157 (285)
T PF01972_consen 140 ADEIVMGP-GAVLGPIDPQ 157 (285)
T ss_pred CCeEEECC-CCccCCCCcc
Confidence 99999987 4667544443
No 153
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=90.09 E-value=1.1 Score=40.88 Aligned_cols=91 Identities=15% Similarity=0.105 Sum_probs=63.8
Q ss_pred ccCCCcCHHHHHHHHHHHH-HHHH-hCCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCcccc
Q psy11283 111 VFGGSLSSVHAEKICKIMD-QAML-TGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAV 188 (314)
Q Consensus 111 ~~gGs~g~~~~~K~~r~~~-~A~~-~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a 188 (314)
|++|.+....+..+..-+- +-.+ .+-|+...++|+|.-+.+|.. ++.. +..-..|+.+++.|-+.+.++
T Consensus 58 fl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGla--------Iyd~-m~~~~~~V~tv~~G~AAS~As 128 (221)
T PRK14514 58 FLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLG--------IYDT-MQFISSDVATICTGMAASMAS 128 (221)
T ss_pred EECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHH--------HHHH-HHhcCCCEEEEEEEEehhHHH
Confidence 5688888988888776443 3222 247999999999987665432 2222 334467999999999999888
Q ss_pred ccccCCCE--EEEecCceeEEEccH
Q psy11283 189 YSPAITDF--TFMVEHSSYLFITGP 211 (314)
Q Consensus 189 ~~~~~~D~--vi~~~~~a~i~~~GP 211 (314)
..+..+|. .+|.+ ++++.+--|
T Consensus 129 lIl~aG~~gkR~~~p-na~iMiHqP 152 (221)
T PRK14514 129 VLLVAGTKGKRSALP-HSRVMIHQP 152 (221)
T ss_pred HHHhcCCCCceeeCC-CCEEEeccC
Confidence 87776664 67877 577766555
No 154
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=89.65 E-value=0.99 Score=40.41 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=64.5
Q ss_pred ccCCCcCHHHHHHHH-HHHHHHHHh-CCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCcccc
Q psy11283 111 VFGGSLSSVHAEKIC-KIMDQAMLT-GAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAV 188 (314)
Q Consensus 111 ~~gGs~g~~~~~K~~-r~~~~A~~~-~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a 188 (314)
|++|.+....+..++ .++.+..+. .-|+...++|+|..+.+|.. ++.. +..-..|+.+++.|-|.+.++
T Consensus 34 fl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~a--------Iyd~-m~~~~~~V~Tv~~G~AaS~as 104 (200)
T CHL00028 34 FLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLA--------IYDT-MQFVKPDVHTICLGLAASMAS 104 (200)
T ss_pred EECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHHH--------HHHH-HHhcCCCEEEEEEEehHHHHH
Confidence 457788888887754 555555444 58999999999987655432 2222 345568999999999999888
Q ss_pred ccccCCC--EEEEecCceeEEEccH
Q psy11283 189 YSPAITD--FTFMVEHSSYLFITGP 211 (314)
Q Consensus 189 ~~~~~~D--~vi~~~~~a~i~~~GP 211 (314)
..++.++ ..+|.+ ++++.+--|
T Consensus 105 lIl~aG~kg~R~~~p-~s~imiHqp 128 (200)
T CHL00028 105 FILAGGEITKRLAFP-HARVMIHQP 128 (200)
T ss_pred HHHhCCCCCCEEecC-CCeEEEecC
Confidence 8776666 578877 477766554
No 155
>KOG1679|consensus
Probab=89.55 E-value=1.6 Score=39.74 Aligned_cols=142 Identities=18% Similarity=0.308 Sum_probs=86.9
Q ss_pred CCCcCHHHHHHHHHHHHHHHHhCCCeEEEec-------CCCcccccchh-------HH-hhHHHHHHHHHHhcCCCCEEE
Q psy11283 113 GGSLSSVHAEKICKIMDQAMLTGAPIVGLND-------SGGARIQEGVE-------SL-AAYSSVFQRNILASGVVPQIS 177 (314)
Q Consensus 113 gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~d-------s~Garl~eg~~-------~l-~~~~~~~~~~~~~~~~VP~is 177 (314)
--|++..-.+.+...++--.+.+---|.+.. |.|+.+.|-.. .+ ..+--+|.. ....-+|+|+
T Consensus 52 kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~d--Ie~Lp~P~IA 129 (291)
T KOG1679|consen 52 KNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFND--IERLPQPVIA 129 (291)
T ss_pred hccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHHH--HHhCCcccee
Confidence 3577777777777777666555444333333 35666644211 00 111112222 3456799999
Q ss_pred EEeCCCCccccccccCCCEEEEecCceeEEE----------c-c----Hhhhhhhhccc--CCccccCCchhhccccCce
Q psy11283 178 LILGPCAGGAVYSPAITDFTFMVEHSSYLFI----------T-G----PDVIKSVTNED--ISQEELGGAKTHTSVSGVA 240 (314)
Q Consensus 178 vv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~----------~-G----P~vv~~~~ge~--v~~~~lGGa~~h~~~~Gv~ 240 (314)
.|-|-+.|||--+.-.||+.++.+ ++.|++ + | |+.+-.+.-++ ++..-|-|++.| .-|++
T Consensus 130 AidG~ALGGGLElALACDiRva~s-~akmGLvET~laiiPGaGGtQRLpR~vg~alaKELIftarvl~g~eA~--~lGlV 206 (291)
T KOG1679|consen 130 AIDGAALGGGLELALACDIRVAAS-SAKMGLVETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVLNGAEAA--KLGLV 206 (291)
T ss_pred hhcchhcccchhhhhhccceehhh-hccccccccceeeecCCCccchhHHHHhHHHHHhHhhhheeccchhHH--hcchH
Confidence 999999999976665699999987 477877 1 1 45554444444 366677788765 47888
Q ss_pred eeEecCH-------HHHHHHHHHHHh
Q psy11283 241 HNAFSND-------IDAIQNVRHLLG 259 (314)
Q Consensus 241 d~~~~de-------~~a~~~ir~~l~ 259 (314)
.+++..- +.+++.+++++-
T Consensus 207 nhvv~qneegdaa~~kal~lA~eilp 232 (291)
T KOG1679|consen 207 NHVVEQNEEGDAAYQKALELAREILP 232 (291)
T ss_pred HHHHhcCccccHHHHHHHHHHHHhcc
Confidence 8777432 236666676663
No 156
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=86.80 E-value=2.6 Score=37.79 Aligned_cols=92 Identities=13% Similarity=0.098 Sum_probs=63.7
Q ss_pred ccCCCcCHHHHHHHHHHH-HHHHHh-CCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCcccc
Q psy11283 111 VFGGSLSSVHAEKICKIM-DQAMLT-GAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAV 188 (314)
Q Consensus 111 ~~gGs~g~~~~~K~~r~~-~~A~~~-~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a 188 (314)
|.+|.+....+..++.-+ .+-.+. .-|+...++|+|..+.+|.. ++.. +.+-..|+.+++.|-|.+.++
T Consensus 31 fl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~Gla--------Iyd~-m~~~~~~V~Ti~~G~AaS~As 101 (201)
T PRK14513 31 FVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLA--------IYDT-MRYIKAPVSTICVGIAMSMGS 101 (201)
T ss_pred EECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHH--------HHHH-HHhcCCCEEEEEEeeehhhHH
Confidence 457888888888876444 443332 47999999999987665432 2222 334456999999999999888
Q ss_pred ccccCCCE--EEEecCceeEEEccHh
Q psy11283 189 YSPAITDF--TFMVEHSSYLFITGPD 212 (314)
Q Consensus 189 ~~~~~~D~--vi~~~~~a~i~~~GP~ 212 (314)
..+..+|. .+|.+ ++++.+--|.
T Consensus 102 ~il~aG~kgkR~~~p-na~iMIHqp~ 126 (201)
T PRK14513 102 VLLMAGDKGKRMALP-NSRIMIHQGS 126 (201)
T ss_pred HHHhcCCCCcEEecC-CeEEEEecCC
Confidence 87766664 67776 5778775553
No 157
>PRK10949 protease 4; Provisional
Probab=84.12 E-value=6.5 Score=41.19 Aligned_cols=79 Identities=14% Similarity=0.163 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHhC--CCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCccccccccCCC
Q psy11283 118 SVHAEKICKIMDQAMLTG--APIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITD 195 (314)
Q Consensus 118 ~~~~~K~~r~~~~A~~~~--lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D 195 (314)
..+++.+.+.++.|.+.. .-||.-+||+|.-.. ....+.+.+.. ....+.|+++.+.+-+..||+|..+.||
T Consensus 346 ~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~----ase~i~~~i~~--~r~~gKPVvas~~~~aASggY~iA~aad 419 (618)
T PRK10949 346 NVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVT----ASEVIRAELAA--ARAAGKPVVVSMGGMAASGGYWISTPAN 419 (618)
T ss_pred CcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHH----HHHHHHHHHHH--HHhcCCcEEEEECCCCccHHHHHHHhcC
Confidence 344566777777776553 347777999986431 11111222222 1234689999888888888888888899
Q ss_pred EEEEecC
Q psy11283 196 FTFMVEH 202 (314)
Q Consensus 196 ~vi~~~~ 202 (314)
.+++.+.
T Consensus 420 ~I~a~p~ 426 (618)
T PRK10949 420 YIVASPS 426 (618)
T ss_pred EEEECCC
Confidence 9999763
No 158
>KOG1682|consensus
Probab=82.87 E-value=4.4 Score=36.56 Aligned_cols=142 Identities=20% Similarity=0.183 Sum_probs=85.0
Q ss_pred CCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEec-----CCCcccccchh--HHhhHHHHHHHH----
Q psy11283 98 NGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLND-----SGGARIQEGVE--SLAAYSSVFQRN---- 166 (314)
Q Consensus 98 ~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~d-----s~Garl~eg~~--~l~~~~~~~~~~---- 166 (314)
+|.+=.++.|+.+..-=|+.+. ..-...+...++...+-.|.+.. |+|-.+.|=.. +-.-.+.+|...
T Consensus 40 ~gvR~i~l~npKk~NtLSLaM~-~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFqtc~dvm 118 (287)
T KOG1682|consen 40 NGVREITLNNPKKLNTLSLAMM-CALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQTCTDVM 118 (287)
T ss_pred cceeeeeecCccccchhhHHHH-HHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHHHHHHHHHHH
Confidence 6777777888876654343322 22334455555666677777765 34555432110 001124444331
Q ss_pred -HHhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEcc---------Hhh--hh----------hhhcccCCc
Q psy11283 167 -ILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITG---------PDV--IK----------SVTNEDISQ 224 (314)
Q Consensus 167 -~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~G---------P~v--v~----------~~~ge~v~~ 224 (314)
....-.||+|+-|.|.+...|--..+.||++++..+ +.+..-| |.+ ++ ..||+.++.
T Consensus 119 n~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~-SkF~tPG~~vGlFCSTPGvAlaRavpRkva~~ML~Tg~Pi~~ 197 (287)
T KOG1682|consen 119 NDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKN-SKFSTPGAGVGLFCSTPGVALARAVPRKVAAYMLMTGLPITG 197 (287)
T ss_pred HHHhcCCCceEEEecchhhhccceEEEeeeEEEEecC-ccccCCCCceeeEecCcchhHhhhcchhHHHHHHHhCCCCch
Confidence 135678999999999988888777788999999874 3332222 221 11 127788876
Q ss_pred cccCCchhhccccCceeeEecCHH
Q psy11283 225 EELGGAKTHTSVSGVAHNAFSNDI 248 (314)
Q Consensus 225 ~~lGGa~~h~~~~Gv~d~~~~de~ 248 (314)
++ +..+|++..++++|+
T Consensus 198 ee-------Al~sGlvskvVp~~e 214 (287)
T KOG1682|consen 198 EE-------ALISGLVSKVVPAEE 214 (287)
T ss_pred HH-------HHHhhhhhhcCCHHH
Confidence 64 256899999998764
No 159
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=75.48 E-value=4.5 Score=37.99 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=23.3
Q ss_pred CceeEEEEEECCeEEEEEeeCCccCC
Q psy11283 289 KNIIVGFARINGHSVGIVANQPKVAA 314 (314)
Q Consensus 289 ~~vvtg~arl~G~~VGvvAn~p~~~~ 314 (314)
.+||||.++|+|+||.+++-+-.+++
T Consensus 110 davvtg~g~i~G~pvv~av~df~Fmg 135 (294)
T COG0777 110 DAVVTGEGTINGLPVVLAVMDFAFMG 135 (294)
T ss_pred cceEEEeeEECCeEEEEEEEeccccc
Confidence 68999999999999999998877764
No 160
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=72.21 E-value=2.6 Score=35.79 Aligned_cols=41 Identities=24% Similarity=0.231 Sum_probs=28.8
Q ss_pred cCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEccH
Q psy11283 170 SGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGP 211 (314)
Q Consensus 170 ~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~GP 211 (314)
....|+++.+.+.|..++.|..+.||.++|.+ .+.++..|.
T Consensus 4 ~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p-~s~vgsiGv 44 (154)
T PF01343_consen 4 ASGKPVVAYAEGYAASGAYYLASAADEIYANP-SSSVGSIGV 44 (154)
T ss_dssp HTT--EEEEEEEEEETHHHHHHTTSSEEEE-T-T-EEE---E
T ss_pred ccCCeEEEEECCcchhHHHHHHHcCCEEEecC-CCEEEEeCh
Confidence 45789999999998888888888999999976 677888774
No 161
>COG3222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.11 E-value=12 Score=33.28 Aligned_cols=83 Identities=18% Similarity=0.271 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEE-ecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCccccccccCCCEE
Q psy11283 119 VHAEKICKIMDQAMLTGAPIVGL-NDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFT 197 (314)
Q Consensus 119 ~~~~K~~r~~~~A~~~~lPvV~l-~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~v 197 (314)
.-++++.|....|-..+-||+.+ .||+|.. ++++.....+-..+| +|+||++=||+|..++..|.
T Consensus 88 d~gdRlars~~~a~~~~~~VliIg~DcP~lt-----------~elLa~a~taL~~~p---aVLGpa~dGGy~llgLrr~~ 153 (211)
T COG3222 88 DLGDRLARSHVDAFDGSYPVLIIGMDCPGLT-----------AELLADAFTALLQIP---AVLGPAFDGGYYLLGLRRFA 153 (211)
T ss_pred CHHHHHHHHHHHHhcCCCcEEEEecCCCccC-----------HHHHHHHHHHHhcCc---ceecccccCcEEEEEeeccC
Confidence 45678888888888888998888 7999865 233333223334555 67999999999998875532
Q ss_pred EEecCceeEEEccHhhhhhh
Q psy11283 198 FMVEHSSYLFITGPDVIKSV 217 (314)
Q Consensus 198 i~~~~~a~i~~~GP~vv~~~ 217 (314)
-.. -..|-..+|++.+.+
T Consensus 154 pe~--fe~ipwg~~~v~~lT 171 (211)
T COG3222 154 PEL--FEAIPWGTPDVLELT 171 (211)
T ss_pred HHH--HhcCCCCCchHHHHH
Confidence 100 112334566666554
No 162
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=67.92 E-value=16 Score=32.83 Aligned_cols=88 Identities=16% Similarity=0.187 Sum_probs=53.3
Q ss_pred CCcCHHHHHHH-HHHHHHHHHh-CCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCccccccc
Q psy11283 114 GSLSSVHAEKI-CKIMDQAMLT-GAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSP 191 (314)
Q Consensus 114 Gs~g~~~~~K~-~r~~~~A~~~-~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~ 191 (314)
|-++...+..+ ..++.+..+. .-|+...++|+|..+.+|.. ++.. +..-+-|+.++++|-+..-|+..+
T Consensus 34 g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~A--------Iydt-m~~ik~~V~ti~~G~AaSmgs~l~ 104 (200)
T COG0740 34 GEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLA--------IYDT-MQFIKPPVSTICMGQAASMGSVLL 104 (200)
T ss_pred eeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHH--------HHHH-HHhcCCCeEEEEecHHHhHHHHHH
Confidence 33443333343 3344444333 57899999999988776543 2222 344567999999998777776655
Q ss_pred cCCCE--EEEecCceeEEEccH
Q psy11283 192 AITDF--TFMVEHSSYLFITGP 211 (314)
Q Consensus 192 ~~~D~--vi~~~~~a~i~~~GP 211 (314)
..++- .++.| +++|.+--|
T Consensus 105 ~aG~~g~r~~lP-nsrimIHqP 125 (200)
T COG0740 105 MAGDKGKRFALP-NARIMIHQP 125 (200)
T ss_pred hcCCCCCceeCC-CceEEEecC
Confidence 44443 36776 577765443
No 163
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=59.49 E-value=35 Score=31.13 Aligned_cols=90 Identities=13% Similarity=0.115 Sum_probs=54.4
Q ss_pred HHHHH-HHHHHHHHHh-CCCeEEEecCCCcccccchh-HHhhHHHHHHHHHHhcCCCCEEEEEeCCCCccccccccCCCE
Q psy11283 120 HAEKI-CKIMDQAMLT-GAPIVGLNDSGGARIQEGVE-SLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDF 196 (314)
Q Consensus 120 ~~~K~-~r~~~~A~~~-~lPvV~l~ds~Garl~eg~~-~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~~~D~ 196 (314)
.++.+ ..++.+..+. .-|+-.+++|+|..+..|.. +...-+-.++.. +..-.-|+.+++.|-+++.++..++.++-
T Consensus 53 ~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~glaIyD~-m~~ik~~V~Tv~~G~AaS~AslIl~aG~k 131 (222)
T PRK12552 53 VTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAICDT-MRYIKPPVHTICIGQAMGTAAMILSAGTK 131 (222)
T ss_pred HHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccccHHHHHHH-HHhcCCCeEEEEEeehhhHHHHHHhCCCC
Confidence 55554 4455554443 57999999999976543311 000112222332 23344688999999999988887766664
Q ss_pred --EEEecCceeEEEccH
Q psy11283 197 --TFMVEHSSYLFITGP 211 (314)
Q Consensus 197 --vi~~~~~a~i~~~GP 211 (314)
.++.+ ++++.+--|
T Consensus 132 g~R~alp-ns~iMIHqP 147 (222)
T PRK12552 132 GQRASLP-HATIVLHQP 147 (222)
T ss_pred CceecCC-CcEEEeccC
Confidence 56666 577766554
No 164
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=55.11 E-value=60 Score=31.49 Aligned_cols=53 Identities=23% Similarity=0.329 Sum_probs=36.6
Q ss_pred ECCEEEEEEEEcccccCC-------------------CcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCcccccc
Q psy11283 97 VNGRTVFIFSQDFTVFGG-------------------SLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEG 152 (314)
Q Consensus 97 I~Gr~v~v~a~D~t~~gG-------------------s~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg 152 (314)
=+|..|++.|-| ||.+| .-|..-+.-+..+++.|...++-+| |+||+| |+|..
T Consensus 165 ~~g~~VllaA~D-TFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~Dvv-liDTAG-RLhnk 236 (340)
T COG0552 165 QQGKSVLLAAGD-TFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVV-LIDTAG-RLHNK 236 (340)
T ss_pred HCCCeEEEEecc-hHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCCCEE-EEeCcc-cccCc
Confidence 468999999998 45433 3444445566678888888888776 567776 77644
No 165
>PRK13291 metal-dependent hydrolase; Provisional
Probab=53.82 E-value=16 Score=31.66 Aligned_cols=51 Identities=14% Similarity=0.205 Sum_probs=42.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHhcCCCCHHHHHHhhcCCC
Q psy11283 12 NDVDHLMRVRGQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPG 62 (314)
Q Consensus 12 ~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~l~arerI~~L~D~g 62 (314)
.+++.|.+.+++..++......+=.+++.....+.|++|++|.+..|+|..
T Consensus 20 ~~~~~~i~~l~~~~~~l~~~l~~lsee~l~~~~~~gkWSi~Evl~HL~D~e 70 (173)
T PRK13291 20 EQIQEWIAEIEALPNELRAAVSGLSDEQLDTPYREGGWTVRQVVHHVADSH 70 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHcCCCCCCCCcHHHHHHHHHHHH
Confidence 355667777777777777888888888888889999999999999999854
No 166
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=52.19 E-value=32 Score=30.76 Aligned_cols=30 Identities=30% Similarity=0.317 Sum_probs=24.1
Q ss_pred hCCCeEEEecCCCcccccchhHHhhHHHHH
Q psy11283 134 TGAPIVGLNDSGGARIQEGVESLAAYSSVF 163 (314)
Q Consensus 134 ~~lPvV~l~ds~Garl~eg~~~l~~~~~~~ 163 (314)
.++|++.|.|++|-++.|-++.+...=+++
T Consensus 2 rRlP~~lllDtSgSM~Ge~IealN~Glq~m 31 (207)
T COG4245 2 RRLPCYLLLDTSGSMIGEPIEALNAGLQMM 31 (207)
T ss_pred CCCCEEEEEecCcccccccHHHHHHHHHHH
Confidence 579999999999999988888775544444
No 167
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=47.96 E-value=45 Score=24.86 Aligned_cols=49 Identities=22% Similarity=0.211 Sum_probs=31.7
Q ss_pred cccccccccHHHHHHHHHHHH----HHHHHHHcCCChhHHHHHHhcCCCCHHHHHHhhcC
Q psy11283 5 GRMYYSYNDVDHLMRVRGQID----SMRAIALQGGGTKSIQAQHNKGKLTARERVELLCD 60 (314)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~g~~~~~~~~~~~g~l~arerI~~L~D 60 (314)
|+.+..|++.++|.+.++.|. ++++.+. -.+.+-+.+.|-..|++.|+|
T Consensus 40 ~~~~~~~~~~~el~~~i~~ll~~~~~~~~ia~-------~a~~~v~~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 40 GEHIITYNDPEELAEKIEYLLENPEERRRIAK-------NARERVLKRHTWEHRAEQILE 92 (92)
T ss_pred CCeEEEECCHHHHHHHHHHHHCCHHHHHHHHH-------HHHHHHHHhCCHHHHHHHHHC
Confidence 566777889999999888873 2333322 122333446788888887764
No 168
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=38.55 E-value=37 Score=25.95 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=26.5
Q ss_pred cccCCCcCHHHHHHHHHHHHHHHHhCCCe
Q psy11283 110 TVFGGSLSSVHAEKICKIMDQAMLTGAPI 138 (314)
Q Consensus 110 t~~gGs~g~~~~~K~~r~~~~A~~~~lPv 138 (314)
+..||++-..--+-+.++.++|.++++|+
T Consensus 40 keRgG~IP~~V~~sl~kL~~La~~N~v~f 68 (82)
T PF11020_consen 40 KERGGQIPEKVMDSLSKLYKLAKENNVSF 68 (82)
T ss_pred HhhCCCCCHHHHHHHHHHHHHHHHcCCCH
Confidence 46799999999999999999999999885
No 169
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=37.73 E-value=63 Score=31.11 Aligned_cols=44 Identities=23% Similarity=0.334 Sum_probs=31.9
Q ss_pred EECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCC
Q psy11283 96 SVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSG 145 (314)
Q Consensus 96 ~I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~ 145 (314)
|||||||.+|-.- +.+ +...+-+...-+.|.+.|+|=|+|+..-
T Consensus 155 kVdGKPv~~Iy~p-----~~~-pd~~~~~~~wr~~a~~~G~~giyii~~~ 198 (345)
T PF14307_consen 155 KVDGKPVFLIYRP-----GDI-PDIKEMIERWREEAKEAGLPGIYIIAVQ 198 (345)
T ss_pred eECCEEEEEEECc-----ccc-cCHHHHHHHHHHHHHHcCCCceEEEEEe
Confidence 9999999888765 222 4444455666699999999977776544
No 170
>KOG1681|consensus
Probab=36.77 E-value=17 Score=33.58 Aligned_cols=88 Identities=15% Similarity=0.361 Sum_probs=57.0
Q ss_pred HhcCCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEE-------c---c-----Hhhhh-hhhccc--CCccccCC
Q psy11283 168 LASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFI-------T---G-----PDVIK-SVTNED--ISQEELGG 229 (314)
Q Consensus 168 ~~~~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~-------~---G-----P~vv~-~~~ge~--v~~~~lGG 229 (314)
.....-|+|+.|-|.|.|+|.-....||+.++.++ +.+-+ + | |.+|- ...-.+ ++....++
T Consensus 122 ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqD-AffsvkEVDvglaADvGTL~RlpkvVGn~s~~~elafTar~f~a 200 (292)
T KOG1681|consen 122 IERCPKPVIAAVHGACIGAGVDLITACDIRYCSQD-AFFSVKEVDVGLAADVGTLNRLPKVVGNQSLARELAFTARKFSA 200 (292)
T ss_pred HHhCChhHHHHHHhhhccccccceeecceeeeccc-ceeeeeeeeeehhhchhhHhhhhHHhcchHHHHHHHhhhhhcch
Confidence 34567899999999999999877778999998875 44433 1 1 22221 111111 23444555
Q ss_pred chhhccccCceeeEecCHHHHHHHHHHHH
Q psy11283 230 AKTHTSVSGVAHNAFSNDIDAIQNVRHLL 258 (314)
Q Consensus 230 a~~h~~~~Gv~d~~~~de~~a~~~ir~~l 258 (314)
.+.| .+|++..+.+|-++.+..+..+.
T Consensus 201 ~EAl--~~GLvSrvf~dk~~ll~~~l~mA 227 (292)
T KOG1681|consen 201 DEAL--DSGLVSRVFPDKEELLNGALPMA 227 (292)
T ss_pred hhhh--hcCcchhhcCCHHHHHhhhHHHH
Confidence 5544 58999999999887666544443
No 171
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=36.44 E-value=34 Score=33.05 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=33.1
Q ss_pred EEEEEECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCC
Q psy11283 92 TGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSG 145 (314)
Q Consensus 92 tG~G~I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~ 145 (314)
.|+-...+.|=+|+..|...- .-++.-|.+.+||+|.|+||-
T Consensus 144 ~Gi~~m~~~Pd~viv~d~~~e------------~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 144 GGIKDMGGLPDLLFVIDTNKE------------DIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred cchhhcccCCCEEEEeCCccc------------hHHHHHHHHcCCCEEEEeeCC
Confidence 456667778888888886422 348999999999999999984
No 172
>PRK06186 hypothetical protein; Validated
Probab=34.69 E-value=36 Score=31.18 Aligned_cols=30 Identities=17% Similarity=0.188 Sum_probs=25.8
Q ss_pred CCCcCHHHHHHHHHHHHHHHHhCCCeEEEec
Q psy11283 113 GGSLSSVHAEKICKIMDQAMLTGAPIVGLND 143 (314)
Q Consensus 113 gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~d 143 (314)
|| +|..+-+-.++++++|.++++|++.++=
T Consensus 61 gG-fg~rg~~Gki~ai~~Are~~iP~LGICl 90 (229)
T PRK06186 61 PG-SPYRNDDGALTAIRFARENGIPFLGTCG 90 (229)
T ss_pred CC-CCcccHhHHHHHHHHHHHcCCCeEeech
Confidence 55 6778888888999999999999999873
No 173
>KOG0781|consensus
Probab=34.69 E-value=1.2e+02 Score=31.19 Aligned_cols=52 Identities=29% Similarity=0.446 Sum_probs=36.7
Q ss_pred CCEEEEEEEEcccccCCCcCH--HHHHHH-----------------------HHHHHHHHHhCCCeEEEecCCCcccccc
Q psy11283 98 NGRTVFIFSQDFTVFGGSLSS--VHAEKI-----------------------CKIMDQAMLTGAPIVGLNDSGGARIQEG 152 (314)
Q Consensus 98 ~Gr~v~v~a~D~t~~gGs~g~--~~~~K~-----------------------~r~~~~A~~~~lPvV~l~ds~Garl~eg 152 (314)
|+.+|.|.|-| ||..|++-- .+.+.+ -.+++.|...+--|| |+|++| |||.-
T Consensus 405 NkfrVLIAACD-TFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak~AI~~a~~~gfDVv-LiDTAG-R~~~~ 481 (587)
T KOG0781|consen 405 NKFRVLIAACD-TFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVAKEAIQEARNQGFDVV-LIDTAG-RMHNN 481 (587)
T ss_pred CCceEEEEecc-chhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHHHHHHHHHHhcCCCEE-EEeccc-cccCC
Confidence 56889999999 677776532 333333 357888889998877 678887 66643
No 174
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=32.97 E-value=38 Score=30.47 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=25.9
Q ss_pred EEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCC
Q psy11283 100 RTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSG 145 (314)
Q Consensus 100 r~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~ 145 (314)
.|-.++..|+.. =..++.-|.+.+||+|.|+||-
T Consensus 114 ~Pdliiv~dp~~------------~~~AI~EA~kl~IP~IaivDTn 147 (204)
T PRK04020 114 EPDVVVVTDPRG------------DAQAVKEAIEVGIPVVALCDTD 147 (204)
T ss_pred CCCEEEEECCcc------------cHHHHHHHHHhCCCEEEEEeCC
Confidence 566677777532 2358899999999999999984
No 175
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=32.73 E-value=38 Score=30.27 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=26.2
Q ss_pred CEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCC
Q psy11283 99 GRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSG 145 (314)
Q Consensus 99 Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~ 145 (314)
..|-.++..|+... ..++..|.+.+||+|.|+||-
T Consensus 107 ~~Pdlliv~dp~~~------------~~Av~EA~~l~IP~Iai~DTn 141 (196)
T TIGR01012 107 REPEVVVVTDPRAD------------HQALKEASEVGIPIVALCDTD 141 (196)
T ss_pred CCCCEEEEECCccc------------cHHHHHHHHcCCCEEEEeeCC
Confidence 45656666775422 248899999999999999974
No 176
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=31.72 E-value=54 Score=28.71 Aligned_cols=39 Identities=13% Similarity=0.031 Sum_probs=22.9
Q ss_pred CEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEe-cCCCc
Q psy11283 99 GRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLN-DSGGA 147 (314)
Q Consensus 99 Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~-ds~Ga 147 (314)
+++|+++.-|.++ ...- .-+..|.++++|+++++ |.+|.
T Consensus 71 ~r~vv~i~GDG~f-----~m~~-----~eL~Ta~~~~lpvi~vV~NN~~y 110 (196)
T cd02013 71 DRPVVAIAGDGAW-----GMSM-----MEIMTAVRHKLPVTAVVFRNRQW 110 (196)
T ss_pred CCcEEEEEcchHH-----hccH-----HHHHHHHHhCCCeEEEEEECchh
Confidence 5777778888333 2321 22344677788877765 66543
No 177
>CHL00067 rps2 ribosomal protein S2
Probab=31.02 E-value=42 Score=30.65 Aligned_cols=40 Identities=10% Similarity=0.081 Sum_probs=30.4
Q ss_pred EEEECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCC
Q psy11283 94 RGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSG 145 (314)
Q Consensus 94 ~G~I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~ 145 (314)
+-.....|-+++..|+..- .-++..|.+.++|+|.++||-
T Consensus 155 i~~m~~~P~~iiv~d~~~~------------~~ai~Ea~~l~IPvIaivDTn 194 (230)
T CHL00067 155 IKYMTKLPDIVIIIDQQEE------------YTALRECRKLGIPTISILDTN 194 (230)
T ss_pred ccccccCCCEEEEeCCccc------------HHHHHHHHHcCCCEEEEEeCC
Confidence 3345567778888886421 258999999999999999984
No 178
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=30.88 E-value=42 Score=30.52 Aligned_cols=41 Identities=22% Similarity=0.265 Sum_probs=30.9
Q ss_pred EEEEECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCC
Q psy11283 93 GRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSG 145 (314)
Q Consensus 93 G~G~I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~ 145 (314)
|+-.....|-.|+..|+. +=.-++..|.+.++|+|.++||-
T Consensus 148 Gi~~m~~~Pd~vii~d~~------------~~~~ai~Ea~~l~IP~I~ivDTn 188 (225)
T TIGR01011 148 GIKDMKKLPDLLFVIDPV------------KEKIAVAEARKLGIPVVAIVDTN 188 (225)
T ss_pred CccccccCCCEEEEeCCC------------ccHHHHHHHHHcCCCEEEEeeCC
Confidence 444556677778887763 22348899999999999999984
No 179
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=30.85 E-value=55 Score=30.37 Aligned_cols=42 Identities=29% Similarity=0.376 Sum_probs=33.6
Q ss_pred EEEEEEECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecC
Q psy11283 91 VTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDS 144 (314)
Q Consensus 91 VtG~G~I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds 144 (314)
+.|+=...+.|=+++..|+.. +| -++.-|.+.|||||.++||
T Consensus 147 lgGIk~m~~~Pd~l~ViDp~~----------e~--iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 147 LGGIKDMKGLPDVLFVIDPRK----------EK--IAVKEANKLGIPVVALVDT 188 (252)
T ss_pred hcchhhccCCCCEEEEeCCcH----------hH--HHHHHHHHcCCCEEEEecC
Confidence 456667888888899999742 23 3788999999999999997
No 180
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=30.44 E-value=44 Score=29.47 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=27.4
Q ss_pred ECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCC
Q psy11283 97 VNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSG 145 (314)
Q Consensus 97 I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~ 145 (314)
....|=.|+..|.. +=..++..|.+.++|+|.++||-
T Consensus 124 ~~~~Pdlviv~~~~------------~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 124 MFRLPDLVIVLDPR------------KEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cccCCCEEEEeCCc------------cchHHHHHHHHcCCCEEEEecCC
Confidence 44556666666652 22358899999999999999996
No 181
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=30.06 E-value=44 Score=31.11 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=31.2
Q ss_pred EEEEECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCC
Q psy11283 93 GRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSG 145 (314)
Q Consensus 93 G~G~I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~ 145 (314)
|+-.....|=+|+..|+. +=.-++.-|.+.+||+|.|+||-
T Consensus 150 Gi~~m~~~Pd~iii~d~~------------~~~~ai~Ea~kl~IPiIaivDTn 190 (258)
T PRK05299 150 GIKDMGGLPDALFVVDPN------------KEHIAVKEARKLGIPVVAIVDTN 190 (258)
T ss_pred CccccccCCCEEEEeCCC------------ccHHHHHHHHHhCCCEEEEeeCC
Confidence 444566778788888864 22348899999999999999984
No 182
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=29.90 E-value=3.2e+02 Score=25.57 Aligned_cols=79 Identities=13% Similarity=0.005 Sum_probs=50.9
Q ss_pred CEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEE
Q psy11283 99 GRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISL 178 (314)
Q Consensus 99 Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isv 178 (314)
|..|.+...|++ .-....-+.+.++++.+.+.+.-.|+|.||.|...++.+ .+++.........+| |.+
T Consensus 128 G~~v~~~~~d~~----~~~r~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v------~~l~~~l~~~~~~~~-i~~ 196 (280)
T cd07945 128 GIEVNIYLEDWS----NGMRDSPDYVFQLVDFLSDLPIKRIMLPDTLGILSPFET------YTYISDMVKRYPNLH-FDF 196 (280)
T ss_pred CCEEEEEEEeCC----CCCcCCHHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHH------HHHHHHHHhhCCCCe-EEE
Confidence 566777777742 111234467788888888899999999999998876543 444443222222343 677
Q ss_pred EeCCCCcccc
Q psy11283 179 ILGPCAGGAV 188 (314)
Q Consensus 179 v~G~~~Gg~a 188 (314)
-+-.+.|-+.
T Consensus 197 H~Hnd~Gla~ 206 (280)
T cd07945 197 HAHNDYDLAV 206 (280)
T ss_pred EeCCCCCHHH
Confidence 7777777653
No 183
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=28.26 E-value=54 Score=30.46 Aligned_cols=20 Identities=20% Similarity=0.468 Sum_probs=18.0
Q ss_pred HHHHHHHHhCCCeEEEecCC
Q psy11283 126 KIMDQAMLTGAPIVGLNDSG 145 (314)
Q Consensus 126 r~~~~A~~~~lPvV~l~ds~ 145 (314)
.++.-|.+.+||+|.|+||-
T Consensus 132 qAI~EA~~lnIPvIal~DTd 151 (249)
T PTZ00254 132 QAIREASYVNIPVIALCDTD 151 (249)
T ss_pred HHHHHHHHhCCCEEEEecCC
Confidence 58899999999999999973
No 184
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=28.20 E-value=52 Score=29.47 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCeEEEecCC
Q psy11283 125 CKIMDQAMLTGAPIVGLNDSG 145 (314)
Q Consensus 125 ~r~~~~A~~~~lPvV~l~ds~ 145 (314)
..++..|.+.++|+|.++||-
T Consensus 156 ~~~i~Ea~~l~IP~i~i~Dtn 176 (211)
T PF00318_consen 156 KNAIREANKLNIPTIAIVDTN 176 (211)
T ss_dssp HHHHHHHHHTTS-EEEEESTT
T ss_pred chhHHHHHhcCceEEEeecCC
Confidence 358999999999999999984
No 185
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=28.12 E-value=25 Score=32.76 Aligned_cols=92 Identities=16% Similarity=0.111 Sum_probs=61.5
Q ss_pred CCCCHHHHHHhhcCCCcceeecccccccccCcccccCCCCCCcEEEEEEEECCEEEEEEEEcccccCCCcCHHHHHHHHH
Q psy11283 47 GKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICK 126 (314)
Q Consensus 47 g~l~arerI~~L~D~gsf~E~~~~~~~~~~~~~~~~~~~~~~gvVtG~G~I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r 126 (314)
|.-++|+..+.|...+.+.-+..+++... +.-...+.-+++|++-.+|....+--++...+=-+..|-.++--..
T Consensus 10 GT~Dar~la~~L~~~~~~~~~ss~t~~g~-----~l~~~~~~~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~iS~N 84 (257)
T COG2099 10 GTSDARALAKKLAAAPVDIILSSLTGYGA-----KLAEQIGPVRVGGFLGAEGLAAFLREEGIDLLIDATHPYAARISQN 84 (257)
T ss_pred ccHHHHHHHHHhhccCccEEEEEcccccc-----cchhccCCeeecCcCCHHHHHHHHHHcCCCEEEECCChHHHHHHHH
Confidence 34567778888877665554444332211 1112334577889988887665555555555555667888888889
Q ss_pred HHHHHHHhCCCeEEEec
Q psy11283 127 IMDQAMLTGAPIVGLND 143 (314)
Q Consensus 127 ~~~~A~~~~lPvV~l~d 143 (314)
+++.|.+.++|.+-|.-
T Consensus 85 a~~aake~gipy~r~eR 101 (257)
T COG2099 85 AARAAKETGIPYLRLER 101 (257)
T ss_pred HHHHHHHhCCcEEEEEC
Confidence 99999999999999874
No 186
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=27.52 E-value=3.1e+02 Score=24.30 Aligned_cols=62 Identities=19% Similarity=0.139 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCccc
Q psy11283 119 VHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGA 187 (314)
Q Consensus 119 ~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~ 187 (314)
..-+++..+++.+.+.+...|+|.||.|...++.+ .+++......... ..|.+-+-...|-+
T Consensus 134 ~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v------~~lv~~~~~~~~~-~~l~~H~Hnd~Gla 195 (237)
T PF00682_consen 134 TDPEELLELAEALAEAGADIIYLADTVGIMTPEDV------AELVRALREALPD-IPLGFHAHNDLGLA 195 (237)
T ss_dssp SSHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHHH------HHHHHHHHHHSTT-SEEEEEEBBTTS-H
T ss_pred ccHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHHH------HHHHHHHHHhccC-CeEEEEecCCccch
Confidence 34567888888889999999999999998877543 4444443222222 35666666666654
No 187
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=27.37 E-value=3.8e+02 Score=24.33 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=30.2
Q ss_pred CEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCC-eEEEecCCCccc
Q psy11283 99 GRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAP-IVGLNDSGGARI 149 (314)
Q Consensus 99 Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lP-vV~l~ds~Garl 149 (314)
.++|+++.-|-.+.-|+. ...+..|.++++| ++.++|..+..+
T Consensus 127 ~~~v~~i~GDG~~~~G~~--------~eal~~a~~~~l~~li~vvdnN~~~~ 170 (255)
T cd02012 127 DYRVYVLLGDGELQEGSV--------WEAASFAGHYKLDNLIAIVDSNRIQI 170 (255)
T ss_pred CCEEEEEECcccccccHH--------HHHHHHHHHcCCCcEEEEEECCCccc
Confidence 578888888855554432 3456678888987 888888876654
No 188
>PRK10342 glycerate kinase I; Provisional
Probab=27.36 E-value=39 Score=33.37 Aligned_cols=44 Identities=20% Similarity=0.361 Sum_probs=33.1
Q ss_pred CCCCcEEEEEEEECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCC
Q psy11283 85 IPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSG 145 (314)
Q Consensus 85 ~~~~gvVtG~G~I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~ 145 (314)
...|=||||.|++|.++.. | +-...+.++|.++++|+|.|+=+-
T Consensus 283 ~~ADLVITGEG~~D~QTl~----------G-------K~p~gVa~~A~~~~vPviai~G~~ 326 (381)
T PRK10342 283 HDCTLVITGEGRIDSQSIH----------G-------KVPIGVANVAKKYHKPVIGIAGSL 326 (381)
T ss_pred ccCCEEEECCCcCcccccC----------C-------ccHHHHHHHHHHhCCCEEEEeccc
Confidence 3467899999999976532 2 224567889999999999998653
No 189
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=27.33 E-value=1.2e+02 Score=28.12 Aligned_cols=75 Identities=12% Similarity=0.060 Sum_probs=48.2
Q ss_pred CEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcC-CCCEEE
Q psy11283 99 GRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASG-VVPQIS 177 (314)
Q Consensus 99 Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~-~VP~is 177 (314)
|..|.+...|.+. ..-+.+.++++.+.+.+...|+|.||.|...++.+ .+++........ .+| |.
T Consensus 122 G~~v~~~~~~a~~-------~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v------~~lv~~l~~~~~~~~~-i~ 187 (266)
T cd07944 122 GYEVFFNLMAISG-------YSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDI------KRIISLLRSNLDKDIK-LG 187 (266)
T ss_pred CCeEEEEEEeecC-------CCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHH------HHHHHHHHHhcCCCce-EE
Confidence 4456665556321 35677788888888899999999999998877644 333433211112 144 67
Q ss_pred EEeCCCCccc
Q psy11283 178 LILGPCAGGA 187 (314)
Q Consensus 178 vv~G~~~Gg~ 187 (314)
+-+-...|-+
T Consensus 188 ~H~Hn~~Gla 197 (266)
T cd07944 188 FHAHNNLQLA 197 (266)
T ss_pred EEeCCCccHH
Confidence 7776777755
No 190
>KOG0073|consensus
Probab=27.30 E-value=1.1e+02 Score=26.91 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=50.3
Q ss_pred EECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHH
Q psy11283 96 SVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESL 156 (314)
Q Consensus 96 ~I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l 156 (314)
++-|.++.|+||-... .|++....-.++..+-+++....+|++.-.--.|-.+.+|+.-|
T Consensus 114 rlaG~~~Lvlank~dl-~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL 173 (185)
T KOG0073|consen 114 RLAGAPLLVLANKQDL-PGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWL 173 (185)
T ss_pred hhcCCceEEEEecCcC-ccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHH
Confidence 5678899999986554 48999999999999999999999999998887787777776544
No 191
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=27.03 E-value=88 Score=24.72 Aligned_cols=28 Identities=14% Similarity=0.455 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEecCCCccc
Q psy11283 122 EKICKIMDQAMLTGAPIVGLNDSGGARI 149 (314)
Q Consensus 122 ~K~~r~~~~A~~~~lPvV~l~ds~Garl 149 (314)
..+.++++.|.+.++|+|.|.+.++..+
T Consensus 61 ~~~~~~~~~a~~~g~~vi~iT~~~~s~l 88 (128)
T cd05014 61 DELLNLLPHLKRRGAPIIAITGNPNSTL 88 (128)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCCch
Confidence 4577899999999999999999877655
No 192
>PF10809 DUF2732: Protein of unknown function (DUF2732); InterPro: IPR020126 This entry represents a group of proteins with no known function
Probab=26.54 E-value=1.9e+02 Score=21.90 Aligned_cols=61 Identities=20% Similarity=0.129 Sum_probs=44.8
Q ss_pred CCcccccccccccHHHHHHHHHH--HHHHHHHHHcC-CChhHHHHHHhcCCCCHHHHHHhhcCC
Q psy11283 1 MNFVGRMYYSYNDVDHLMRVRGQ--IDSMRAIALQG-GGTKSIQAQHNKGKLTARERVELLCDP 61 (314)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~-g~~~~~~~~~~~g~l~arerI~~L~D~ 61 (314)
+|-..+.+-...|.+.+..++.+ .++|+..+..- ..-+++..+-.+.+|++-|.+++|.-+
T Consensus 2 ~n~e~~~~~~~~d~~~l~~lL~~AR~eeRk~~A~~~S~RL~~LA~hi~~~~ls~~E~~ELLrqE 65 (77)
T PF10809_consen 2 RNTETRSMKTGADAASLNELLNKARMEERKDRADAFSSRLDALAAHIANEELSAVEAAELLRQE 65 (77)
T ss_pred CcchhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 47778888888888767777755 45666666544 345677777788899999999988643
No 193
>KOG0840|consensus
Probab=26.03 E-value=2e+02 Score=26.99 Aligned_cols=88 Identities=15% Similarity=0.151 Sum_probs=57.0
Q ss_pred ccCCCcCHHHHHHH-HHHHHHHHH-hCCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCcccc
Q psy11283 111 VFGGSLSSVHAEKI-CKIMDQAML-TGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAV 188 (314)
Q Consensus 111 ~~gGs~g~~~~~K~-~r~~~~A~~-~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a 188 (314)
+.|+.+....+..+ ..++-|..+ -..|+..+++|+|.-+.+|+.- +.. +..-+-|+-|+.+|-+++-++
T Consensus 96 ~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAI--------YDt-Mq~ik~~V~Tic~G~Aas~aa 166 (275)
T KOG0840|consen 96 FLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAI--------YDT-MQYIKPDVSTICVGLAASMAA 166 (275)
T ss_pred eeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhH--------HHH-HHhhCCCceeeehhhHHhHHH
Confidence 56888888777764 556665544 4589999999999988765432 221 223345777888888888777
Q ss_pred cccc--CCCEEEEecCceeEEE
Q psy11283 189 YSPA--ITDFTFMVEHSSYLFI 208 (314)
Q Consensus 189 ~~~~--~~D~vi~~~~~a~i~~ 208 (314)
+..+ --...++.+ ++++.+
T Consensus 167 lLLaaG~KG~R~alP-nsriMI 187 (275)
T KOG0840|consen 167 LLLAAGAKGKRYALP-NSRIMI 187 (275)
T ss_pred HHHhcCCCcceeecC-CceeEE
Confidence 6543 233445555 356654
No 194
>COG1422 Predicted membrane protein [Function unknown]
Probab=25.67 E-value=1.1e+02 Score=27.38 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=30.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHhcC
Q psy11283 12 NDVDHLMRVRGQIDSMRAIALQGGGTKSIQAQHNKG 47 (314)
Q Consensus 12 ~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g 47 (314)
...+++....+|++++.++|++.|..++++|..+..
T Consensus 72 ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~q 107 (201)
T COG1422 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQ 107 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345667778889999999999999999999988764
No 195
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=25.58 E-value=3.2e+02 Score=24.93 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCcccc
Q psy11283 119 VHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAV 188 (314)
Q Consensus 119 ~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a 188 (314)
..-+.+..+++.+.+.+.-.|+|.||.|...++.+ .+++........ +| +.+-+-.+.|-+.
T Consensus 136 ~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v------~~lv~~l~~~~~-~~-l~~H~Hn~~Gla~ 197 (259)
T cd07939 136 ADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTT------YELIRRLRAATD-LP-LEFHAHNDLGLAT 197 (259)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHH------HHHHHHHHHhcC-Ce-EEEEecCCCChHH
Confidence 34567777788888889999999999998876543 334433222222 54 6777777777653
No 196
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=25.25 E-value=1.5e+02 Score=28.64 Aligned_cols=62 Identities=18% Similarity=0.075 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcC-CCCEEEEEeCCCCccc
Q psy11283 119 VHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASG-VVPQISLILGPCAGGA 187 (314)
Q Consensus 119 ~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~-~VP~isvv~G~~~Gg~ 187 (314)
..-+++....+.+.+.+...|+|.||.|...++.+ .+.+........ .+| |.+-.-.+.|-+
T Consensus 140 ~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v------~~~v~~l~~~l~~~i~-ig~H~HnnlGla 202 (333)
T TIGR03217 140 TPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDV------RDRVRALKAVLKPETQ-VGFHAHHNLSLA 202 (333)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHH------HHHHHHHHHhCCCCce-EEEEeCCCCchH
Confidence 34578888889999999999999999998877543 333433211111 244 677666777755
No 197
>PRK10949 protease 4; Provisional
Probab=25.04 E-value=4e+02 Score=28.05 Aligned_cols=85 Identities=12% Similarity=0.066 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHh-CCC-eEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCcc-ccccccCC
Q psy11283 118 SVHAEKICKIMDQAMLT-GAP-IVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGG-AVYSPAIT 194 (314)
Q Consensus 118 ~~~~~K~~r~~~~A~~~-~lP-vV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg-~a~~~~~~ 194 (314)
+.....+.+.++.|.+. ++- ||.=.|++|.- +...+..+.+.+... + ..+.|+++. +..++- ++|..+.|
T Consensus 94 ~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~---~~a~~~eI~~ai~~f-k-~sGKpVvA~--~~~~~s~~YyLASaA 166 (618)
T PRK10949 94 ENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGA---DQPSMQYIGKALREF-R-DSGKPVYAV--GDSYSQGQYYLASFA 166 (618)
T ss_pred cccHHHHHHHHHHHhcCCCceEEEEEeCCCCCc---cHHHHHHHHHHHHHH-H-HhCCeEEEE--ecCccchhhhhhhhC
Confidence 35566788888888755 455 34345665421 111222233333332 2 345798874 555555 44455679
Q ss_pred CEEEEecCceeEEEcc
Q psy11283 195 DFTFMVEHSSYLFITG 210 (314)
Q Consensus 195 D~vi~~~~~a~i~~~G 210 (314)
|.+++.+ .+.+.+.|
T Consensus 167 D~I~l~P-~G~v~~~G 181 (618)
T PRK10949 167 NKIYLSP-QGVVDLHG 181 (618)
T ss_pred CEEEECC-CceEEEee
Confidence 9999976 57787766
No 198
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=24.97 E-value=3.4e+02 Score=28.27 Aligned_cols=85 Identities=13% Similarity=0.071 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHhC-CCeEEE-ecC-CCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCccccccccCC
Q psy11283 118 SVHAEKICKIMDQAMLTG-APIVGL-NDS-GGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAIT 194 (314)
Q Consensus 118 ~~~~~K~~r~~~~A~~~~-lPvV~l-~ds-~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~a~~~~~~ 194 (314)
+.....+.+.++.|.+.. +--|.| .|+ +|.- ...+..+.+.+... ...+.|+++..... .-+++|..+.|
T Consensus 75 ~~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~----~~~~~ei~~ai~~f--k~sgKpVvA~~~~~-~s~~YylAs~A 147 (584)
T TIGR00705 75 AISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWD----SPHLVEIGSALSEF--KDSGKPVYAYGTNY-SQGQYYLASFA 147 (584)
T ss_pred CcCHHHHHHHHHHHhcCCCceEEEEEccCCCCCC----HHHHHHHHHHHHHH--HhcCCeEEEEEccc-cchhhhhhhhC
Confidence 456778888888887664 554544 554 3422 11222233333331 23568999864433 23455566689
Q ss_pred CEEEEecCceeEEEcc
Q psy11283 195 DFTFMVEHSSYLFITG 210 (314)
Q Consensus 195 D~vi~~~~~a~i~~~G 210 (314)
|.+++.+ .+.+.+.|
T Consensus 148 D~I~~~p-~G~v~~~G 162 (584)
T TIGR00705 148 DEIILNP-MGSVDLHG 162 (584)
T ss_pred CEEEECC-CceEEeec
Confidence 9999976 56776655
No 199
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=24.85 E-value=1.7e+02 Score=27.55 Aligned_cols=55 Identities=22% Similarity=0.287 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHhC----CCeEEEecCCCcccccchhHHh--hHHHHHHHHHHhcCCCCEEEEE
Q psy11283 118 SVHAEKICKIMDQAMLTG----APIVGLNDSGGARIQEGVESLA--AYSSVFQRNILASGVVPQISLI 179 (314)
Q Consensus 118 ~~~~~K~~r~~~~A~~~~----lPvV~l~ds~Garl~eg~~~l~--~~~~~~~~~~~~~~~VP~isvv 179 (314)
......|+++++.+.+.+ .-+|.+.-+||.. |....+. ..++. .+...+|+||.|
T Consensus 54 ~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~--eDL~~FN~e~vara-----i~~~~~PvisaI 114 (319)
T PF02601_consen 54 EGAAASIVSALRKANEMGQADDFDVIIIIRGGGSI--EDLWAFNDEEVARA-----IAASPIPVISAI 114 (319)
T ss_pred cchHHHHHHHHHHHHhccccccccEEEEecCCCCh--HHhcccChHHHHHH-----HHhCCCCEEEec
Confidence 667788999999998876 7899999999976 3332221 12222 355679999865
No 200
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=24.69 E-value=1.2e+02 Score=22.91 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=24.9
Q ss_pred EEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEec
Q psy11283 100 RTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLND 143 (314)
Q Consensus 100 r~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~d 143 (314)
-..+++|+|.. +. -...+.++|.+.++|++++.+
T Consensus 28 aklViiA~D~~-------~~---~~~~i~~~c~~~~Vp~~~~~s 61 (82)
T PRK13602 28 VKEVVVAEDAD-------PR---LTEKVEALANEKGVPVSKVDS 61 (82)
T ss_pred eeEEEEECCCC-------HH---HHHHHHHHHHHcCCCEEEECC
Confidence 34788899952 22 344578899999999998773
No 201
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=24.62 E-value=47 Score=32.54 Aligned_cols=47 Identities=23% Similarity=0.442 Sum_probs=35.0
Q ss_pred CCCCcEEEEEEEECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCcc
Q psy11283 85 IPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGAR 148 (314)
Q Consensus 85 ~~~~gvVtG~G~I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Gar 148 (314)
...|=||||.||+|.+... | +--....++|.+++.|+|.++-|-+-.
T Consensus 283 ~daDLVITGEGr~D~Qs~~----------G-------K~pigVA~~Akk~~vPvIaiaGs~~~~ 329 (378)
T COG1929 283 KDADLVITGEGRIDSQSLH----------G-------KTPIGVAKLAKKYGVPVIAIAGSLGED 329 (378)
T ss_pred ccCCEEEeCCCcccccccC----------C-------ccchHHHHhhhhhCCCEEEEecccccC
Confidence 3468899999999976532 2 123457889999999999999875543
No 202
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=24.25 E-value=70 Score=24.47 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEecC
Q psy11283 119 VHAEKICKIMDQAMLTGAPIVGLNDS 144 (314)
Q Consensus 119 ~~~~K~~r~~~~A~~~~lPvV~l~ds 144 (314)
.+..-..|.++++.+.++|++.++++
T Consensus 37 la~~dv~r~~~~~~~~~vpilGvVEN 62 (81)
T PF10609_consen 37 LALADVRRAIDMFRKLNVPILGVVEN 62 (81)
T ss_dssp --HHHHHHHHHHHHCTT-EEEEEEEC
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 34455678899999999999999875
No 203
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=23.32 E-value=1.4e+02 Score=27.45 Aligned_cols=60 Identities=20% Similarity=0.108 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEEEEEeCCCCccc
Q psy11283 121 AEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGA 187 (314)
Q Consensus 121 ~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~isvv~G~~~Gg~ 187 (314)
-+.+.++++.+.+.+...|+|.||.|...++.+ .+++.........+ .+.+-+-.+.|-+
T Consensus 140 ~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v------~~lv~~l~~~~~~~-~l~~H~Hn~~GlA 199 (263)
T cd07943 140 PEELAEQAKLMESYGADCVYVTDSAGAMLPDDV------RERVRALREALDPT-PVGFHGHNNLGLA 199 (263)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHH------HHHHHHHHHhCCCc-eEEEEecCCcchH
Confidence 366778888888999999999999998776543 44444322221212 3677777777755
No 204
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=23.15 E-value=90 Score=23.99 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=24.9
Q ss_pred EEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEe
Q psy11283 100 RTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLN 142 (314)
Q Consensus 100 r~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ 142 (314)
...+++|.|.. + +-+.++..+|.+.++|++++.
T Consensus 30 ~~~v~iA~Da~-------~---~vv~~l~~lceek~Ip~v~V~ 62 (84)
T PRK13600 30 VTSLIIAEDVE-------V---YLMTRVLSQINQKNIPVSFFK 62 (84)
T ss_pred ceEEEEeCCCC-------H---HHHHHHHHHHHHcCCCEEEEC
Confidence 34778888842 2 245689999999999999864
No 205
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=22.39 E-value=1.3e+02 Score=27.01 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEecC
Q psy11283 119 VHAEKICKIMDQAMLTGAPIVGLNDS 144 (314)
Q Consensus 119 ~~~~K~~r~~~~A~~~~lPvV~l~ds 144 (314)
....++.++++.|.+.++|||++.++
T Consensus 46 ~~i~~i~~l~~~aR~~g~pVI~~~~~ 71 (226)
T TIGR03614 46 PVIENIKKAVTAARAAGIQVIYFQNG 71 (226)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 34566889999999999999999875
No 206
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=22.36 E-value=2.5e+02 Score=25.66 Aligned_cols=107 Identities=11% Similarity=0.114 Sum_probs=66.2
Q ss_pred ChhHHHHHHhcCCC---------CHHHHHHhhcCCCc-ceeeccccc-ccccCcccccCCCCCCcEEEEEEEECC-----
Q psy11283 36 GTKSIQAQHNKGKL---------TARERVELLCDPGT-FVEYDMFME-HRCVDFNMSEKKIPGDSVVTGRGSVNG----- 99 (314)
Q Consensus 36 ~~~~~~~~~~~g~l---------~arerI~~L~D~gs-f~E~~~~~~-~~~~~~~~~~~~~~~~gvVtG~G~I~G----- 99 (314)
|++.++..++...+ .+...|+.+.+.|. +.-++.-+. ..+... . +.....|+-+|++-=-+
T Consensus 47 g~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~-i--~~Ik~~G~kaGlalnP~T~~~~ 123 (229)
T PRK09722 47 SPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITLHPETINGQAFRL-I--DEIRRAGMKVGLVLNPETPVES 123 (229)
T ss_pred CHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEECccCCcchHHHH-H--HHHHHcCCCEEEEeCCCCCHHH
Confidence 46667777664333 37888888888773 444543211 000000 0 00112233344442111
Q ss_pred --------EEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCC
Q psy11283 100 --------RTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSG 145 (314)
Q Consensus 100 --------r~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~ 145 (314)
-.|.|..-++.+-|-++-+...+|+.++-++-.+.++.+..-+|.|
T Consensus 124 l~~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGG 177 (229)
T PRK09722 124 IKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGS 177 (229)
T ss_pred HHHHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 2466777789999999999999999999999999998888888863
No 207
>PRK09932 glycerate kinase II; Provisional
Probab=22.19 E-value=57 Score=32.19 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=33.1
Q ss_pred CCCCcEEEEEEEECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecC
Q psy11283 85 IPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDS 144 (314)
Q Consensus 85 ~~~~gvVtG~G~I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds 144 (314)
...|=||||.|++|.++.. | +-...+.++|.++++|+|.|+=+
T Consensus 283 ~~ADlVITGEG~~D~Qt~~----------G-------K~p~~Va~~A~~~~~Pvi~i~G~ 325 (381)
T PRK09932 283 QGAALVITGEGRIDSQTAG----------G-------KAPLGVASVAKQFNVPVIGIAGV 325 (381)
T ss_pred ccCCEEEECCCcccccccC----------C-------ccHHHHHHHHHHcCCCEEEEecc
Confidence 3468899999999976532 2 22456788999999999999765
No 208
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=21.71 E-value=1.2e+02 Score=25.86 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhCCCeEEEecCCCccc
Q psy11283 121 AEKICKIMDQAMLTGAPIVGLNDSGGARI 149 (314)
Q Consensus 121 ~~K~~r~~~~A~~~~lPvV~l~ds~Garl 149 (314)
...+.++++.|.+.|+|+|.+.++.+..+
T Consensus 88 t~~~i~~~~~ak~~g~~iI~IT~~~~s~l 116 (179)
T cd05005 88 TSSVVNAAEKAKKAGAKVVLITSNPDSPL 116 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCCch
Confidence 35567899999999999999999876654
No 209
>PRK11440 putative hydrolase; Provisional
Probab=21.47 E-value=1.1e+02 Score=26.45 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEecC
Q psy11283 118 SVHAEKICKIMDQAMLTGAPIVGLNDS 144 (314)
Q Consensus 118 ~~~~~K~~r~~~~A~~~~lPvV~l~ds 144 (314)
..-..++.++++.|.+.++|||+..+.
T Consensus 31 ~~~i~~i~~l~~~ar~~g~pVi~~~~~ 57 (188)
T PRK11440 31 DEVVARAARLAAKFRASGSPVVLVRVG 57 (188)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 355677899999999999999998764
No 210
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=21.35 E-value=2.2e+02 Score=25.01 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=19.2
Q ss_pred EEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCc
Q psy11283 100 RTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGA 147 (314)
Q Consensus 100 r~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Ga 147 (314)
++|+++.-|.++..|.+ ...+..|..+..|+|+++|.-+.
T Consensus 98 ~~vv~~~GDG~~~eG~~--------~Eal~~A~~~~~~li~vvdnN~~ 137 (195)
T cd02007 98 RKVIAVIGDGALTGGMA--------FEALNNAGYLKSNMIVILNDNEM 137 (195)
T ss_pred CeEEEEEcccccccChH--------HHHHHHHHHhCCCEEEEEECCCc
Confidence 45555555644433331 22334444445666666655443
No 211
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=21.32 E-value=1.3e+02 Score=23.61 Aligned_cols=28 Identities=14% Similarity=0.369 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEecCCCccc
Q psy11283 122 EKICKIMDQAMLTGAPIVGLNDSGGARI 149 (314)
Q Consensus 122 ~K~~r~~~~A~~~~lPvV~l~ds~Garl 149 (314)
+.....++.|.+.+.|+|.+.++.+-.+
T Consensus 67 ~~~~~~~~~ak~~g~~vi~iT~~~~~~l 94 (131)
T PF01380_consen 67 RELIELLRFAKERGAPVILITSNSESPL 94 (131)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSTTSHH
T ss_pred hhhhhhhHHHHhcCCeEEEEeCCCCCch
Confidence 5678888999999999999999876544
No 212
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=21.31 E-value=1.6e+02 Score=28.41 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=29.3
Q ss_pred CCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCc
Q psy11283 98 NGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGA 147 (314)
Q Consensus 98 ~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Ga 147 (314)
.+++|+++.-|.++.-|. +...+.+|..+++|+|+++.+-+.
T Consensus 143 ~~~~vv~~~GDGa~~~g~--------~~EaL~tA~~~~LPvi~Vv~NN~~ 184 (341)
T TIGR03181 143 EDNVAVTYFGDGGTSEGD--------FYEALNFAGVFKAPVVFFVQNNQW 184 (341)
T ss_pred CCCEEEEEecCCccccCh--------HHHHHHHHhccCCCEEEEEECCCC
Confidence 467888888885443222 234677888899999999876553
No 213
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=20.92 E-value=1.5e+02 Score=28.49 Aligned_cols=62 Identities=21% Similarity=0.085 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhc-CCCCEEEEEeCCCCccc
Q psy11283 119 VHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILAS-GVVPQISLILGPCAGGA 187 (314)
Q Consensus 119 ~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~-~~VP~isvv~G~~~Gg~ 187 (314)
..-+++.+..+.+.+.+.-.|+|.||.|...++.+ .+++....... ..+| |.+-+-.+.|-+
T Consensus 141 ~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v------~~~v~~l~~~l~~~i~-ig~H~HnnlGla 203 (337)
T PRK08195 141 APPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDV------RDRVRALRAALKPDTQ-VGFHGHNNLGLG 203 (337)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHH------HHHHHHHHHhcCCCCe-EEEEeCCCcchH
Confidence 35577888888889999999999999998877543 33443321111 1343 666666777754
No 214
>KOG4031|consensus
Probab=20.59 E-value=1.9e+02 Score=26.10 Aligned_cols=48 Identities=19% Similarity=0.116 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChh---HHHHHHhcCCCCHHHHHHhhcCC
Q psy11283 14 VDHLMRVRGQIDSMRAIALQGGGTK---SIQAQHNKGKLTARERVELLCDP 61 (314)
Q Consensus 14 ~~~~~~~~~~l~~~~~~~~~~g~~~---~~~~~~~~g~l~arerI~~L~D~ 61 (314)
+|+++++++...+.+++.......+ .+..-...+.=|-||||..|||-
T Consensus 138 kKelddwy~~~~ek~~k~~~~nk~eee~~~~e~~~~~~gTeWErv~kL~D~ 188 (216)
T KOG4031|consen 138 KKELDDWYDQQNEKLEKTKANNKAEEEALVKENEEFSPGTEWERVAKLCDF 188 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcccCCCchHHHHHHHHcC
Confidence 3455555555555555444433211 12222233444899999999994
No 215
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=20.53 E-value=1.9e+02 Score=29.13 Aligned_cols=66 Identities=24% Similarity=0.378 Sum_probs=40.0
Q ss_pred EEEEcccccCCCcCHHHHHHHHHHHHHHHHhC-CCeEEEecCCCcccccchhHHhhHH-HHHHHHHHhcCCCCEEEEE
Q psy11283 104 IFSQDFTVFGGSLSSVHAEKICKIMDQAMLTG-APIVGLNDSGGARIQEGVESLAAYS-SVFQRNILASGVVPQISLI 179 (314)
Q Consensus 104 v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~-lPvV~l~ds~Garl~eg~~~l~~~~-~~~~~~~~~~~~VP~isvv 179 (314)
|+...-+|.| ...+.-|+++++.|++.+ +-+|.+.-.||.- |- |-.+- +... -+.....+|+||.|
T Consensus 165 viv~pt~VQG----~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSi--ED---LW~FNdE~va-RAi~~s~iPvISAV 232 (440)
T COG1570 165 VIVYPTLVQG----EGAAEEIVEAIERANQRGDVDVLIVARGGGSI--ED---LWAFNDEIVA-RAIAASRIPVISAV 232 (440)
T ss_pred EEEEeccccC----CCcHHHHHHHHHHhhccCCCCEEEEecCcchH--HH---HhccChHHHH-HHHHhCCCCeEeec
Confidence 3444444444 667888999999999999 5566666666643 21 21111 1111 12355789999976
No 216
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=20.49 E-value=1.9e+02 Score=29.69 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=44.3
Q ss_pred ECCEEEEEEEEcccccCCCcCHHHHHH--HHHHHHHHHHhCCCeEEEecCCCc
Q psy11283 97 VNGRTVFIFSQDFTVFGGSLSSVHAEK--ICKIMDQAMLTGAPIVGLNDSGGA 147 (314)
Q Consensus 97 I~Gr~v~v~a~D~t~~gGs~g~~~~~K--~~r~~~~A~~~~lPvV~l~ds~Ga 147 (314)
.+...|++.-+|.....|-+...-+.| +.++.++|.++++|+-.|.=.||.
T Consensus 202 ~~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l~pfhGrGgs 254 (506)
T TIGR02751 202 PEYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISIYPIIGAGSL 254 (506)
T ss_pred cCceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeecCCC
Confidence 566899999999999999888877776 569999999999999999877664
No 217
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=20.24 E-value=1e+02 Score=31.90 Aligned_cols=61 Identities=23% Similarity=0.387 Sum_probs=38.2
Q ss_pred cccccc--ccHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHhcCCCC--HHHHHHhhcCCCcceeec
Q psy11283 6 RMYYSY--NDVDHLMRVRGQIDSMRAIALQGGGTKSIQAQHNKGKLT--ARERVELLCDPGTFVEYD 68 (314)
Q Consensus 6 ~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~l~--arerI~~L~D~gsf~E~~ 68 (314)
+.||.| -+.+.+.+..+++..+... ...=.+.+.+++++=..+ +.+.|+.|.|+++|+-+.
T Consensus 26 ~~fy~~~~~~~~~f~~r~~~~~~~~~~--R~~Lv~~L~~~~~~~~~s~~~~~nie~L~~~~t~vVvt 90 (542)
T PF10079_consen 26 RSFYHYDPPDIEAFEKRAEELKERSYD--REALVEALRAQNKRLGASEAVLENIERLADPNTFVVVT 90 (542)
T ss_pred hhhcCCCCCCHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCCEEEEe
Confidence 458888 5667777777776542211 000024566777664333 588999999999888664
No 218
>PLN02743 nicotinamidase
Probab=20.13 E-value=1.1e+02 Score=28.02 Aligned_cols=25 Identities=12% Similarity=0.208 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhCCCeEEEecCC
Q psy11283 121 AEKICKIMDQAMLTGAPIVGLNDSG 145 (314)
Q Consensus 121 ~~K~~r~~~~A~~~~lPvV~l~ds~ 145 (314)
..++.++++.|.+.++|||++.|+.
T Consensus 60 v~~i~~Ll~~aR~~g~pVI~~~d~h 84 (239)
T PLN02743 60 VDESARLAREFCERKWPVLAFLDSH 84 (239)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeCcc
Confidence 3468999999999999999998763
Done!