RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11283
(314 letters)
>gnl|CDD|130187 TIGR01117, mmdA, methylmalonyl-CoA decarboxylase alpha subunit.
This model describes methymalonyl-CoA decarboxylase
aplha subunit in archaea and bacteria. Metylmalonyl-CoA
decarboxylase Na+ pump is a representative of a class of
Na+ transport decarboxylases that couples the energy
derived by decarboxylation of carboxylic acid substrates
to drive the extrusion of Na+ ion across the membrane
[Energy metabolism, ATP-proton motive force
interconversion, Energy metabolism, Fermentation,
Transport and binding proteins, Cations and iron
carrying compounds].
Length = 512
Score = 410 bits (1056), Expect = e-142
Identities = 175/315 (55%), Positives = 219/315 (69%), Gaps = 32/315 (10%)
Query: 32 LQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVV 91
QGGG K I+ QH +GK+TARER+ LL DPG+FVE D F++HRC +F M +K++P + VV
Sbjct: 14 KQGGGEKRIEKQHAQGKMTARERLALLFDPGSFVEIDQFVKHRCTNFGMDKKELPAEGVV 73
Query: 92 TGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQE 151
TG G+++GR V+ F+QDFTV GGSL +HA KI KIMD AM GAP+VGLNDSGGARIQE
Sbjct: 74 TGYGTIDGRLVYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMGAPVVGLNDSGGARIQE 133
Query: 152 GVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGP 211
V++L Y +F RN +ASGVVPQIS I+GPCAGGAVYSPA+TDF +MV+++S +FITGP
Sbjct: 134 AVDALKGYGDIFYRNTIASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFITGP 193
Query: 212 DVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLPMNNTQKPPI 271
VIK+VT E+++ E+LGGA H SVSGVAH +D D I +R LL FLP NN +K P+
Sbjct: 194 QVIKTVTGEEVTAEQLGGAMAHNSVSGVAHFIAEDDDDCIMLIRRLLSFLPSNNMEKAPL 253
Query: 272 RRC----------------------YDSR----------EFFEIQPKYAKNIIVGFARIN 299
+ YD R ++ E+QP YA NII FARIN
Sbjct: 254 VKTGDDPTRETPELYDLLPDNPNKPYDMRDVITAIVDNGDYLEVQPYYAPNIITCFARIN 313
Query: 300 GHSVGIVANQPKVAA 314
G SVGI+ANQPKV A
Sbjct: 314 GQSVGIIANQPKVMA 328
Score = 34.8 bits (80), Expect = 0.052
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 19/109 (17%)
Query: 89 SVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIV--------- 139
+++T +NG++V I + V G L ++KI + + PIV
Sbjct: 304 NIITCFARINGQSVGIIANQPKVMAGCLDIDSSDKIARFIRFCDAFNIPIVTFVDVPGFL 363
Query: 140 -GLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGA 187
G+N G I+ G + L AYS VP++++I GGA
Sbjct: 364 PGVNQEYGGIIRHGAKVLYAYS---------EATVPKVTIITRKAYGGA 403
>gnl|CDD|227136 COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase
component (subunits alpha and beta) [Lipid metabolism].
Length = 526
Score = 410 bits (1055), Expect = e-142
Identities = 164/324 (50%), Positives = 209/324 (64%), Gaps = 35/324 (10%)
Query: 23 QIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSE 82
++ RAIA+ GGG K+++ QH KGKLTARERVELL DPG+F+E HR
Sbjct: 17 ELRERRAIAVAGGGEKAVEKQHGKGKLTARERVELLLDPGSFLELGALAGHR---MGGDA 73
Query: 83 KKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLN 142
++PGD VVTG G++NGR VF+F+ DFTV GG+L + A+KI + + A+ G P++GLN
Sbjct: 74 NELPGDGVVTGIGTINGRKVFVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLN 133
Query: 143 DSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEH 202
DSGGARIQEGV SLA Y +F RN ASGV+PQIS+++GPCAGG YSPA+TDF MV
Sbjct: 134 DSGGARIQEGVPSLAGYGRIFYRNARASGVIPQISVVMGPCAGGGAYSPALTDFVIMVRD 193
Query: 203 SSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLP 262
SY+F+TGP VIK+VT E++S EELGGA+ H SGVA +D DAI+ VR LL +LP
Sbjct: 194 QSYMFLTGPPVIKAVTGEEVSAEELGGAQVHARKSGVADLLAEDDEDAIELVRRLLSYLP 253
Query: 263 MNNTQKPPI----------------------RRCYDSRE----------FFEIQPKYAKN 290
NN + PP+ R+ YD RE F E + YAKN
Sbjct: 254 SNNREPPPVVPTPDEPDRDDEELDSIVPDDPRKPYDVREVIARLVDDGEFLEFKAGYAKN 313
Query: 291 IIVGFARINGHSVGIVANQPKVAA 314
I+ GFARI+G VGI+ANQP+
Sbjct: 314 IVTGFARIDGRPVGIIANQPRHLG 337
Score = 37.2 bits (87), Expect = 0.011
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 14/144 (9%)
Query: 67 YDMF-MEHRCVDF-NMSE-KKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEK 123
YD+ + R VD E K ++VTG ++GR V I + GG L A+K
Sbjct: 288 YDVREVIARLVDDGEFLEFKAGYAKNIVTGFARIDGRPVGIIANQPRHLGGVLDIDSADK 347
Query: 124 ICKIMDQAMLTGAPIVGLND----SGGARIQEGVESLAAYSSVFQRNILASGVVPQISLI 179
+ + P+V L D G QE + + + +A VP+I++I
Sbjct: 348 AARFIRLCDAFNIPLVFLVDTPGFMPGTD-QEYGGIIKHGAKLLYA--VAEATVPKITVI 404
Query: 180 LGPCAGGAVY---SPAIT-DFTFM 199
GGA Y A+ DF +
Sbjct: 405 TRKAYGGAYYVMGGKALGPDFNYA 428
>gnl|CDD|216259 pfam01039, Carboxyl_trans, Carboxyl transferase domain. All of the
members in this family are biotin dependent
carboxylases. The carboxyl transferase domain carries
out the following reaction; transcarboxylation from
biotin to an acceptor molecule. There are two recognised
types of carboxyl transferase. One of them uses acyl-CoA
and the other uses 2-oxoacid as the acceptor molecule of
carbon dioxide. All of the members in this family
utilise acyl-CoA as the acceptor molecule.
Length = 487
Score = 386 bits (995), Expect = e-133
Identities = 147/307 (47%), Positives = 193/307 (62%), Gaps = 36/307 (11%)
Query: 42 AQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRT 101
+H +GKLTARER++LL DPG+F E + HR +F K++PGD VVTG G+++GR
Sbjct: 1 PEHPRGKLTARERIDLLLDPGSFGELEDLFFHRVTEFGR--KRLPGDGVVTGSGAIDGRA 58
Query: 102 VFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSS 161
V + +QDFTV+GGSL H KI + M+ A+ G P++G+NDSGGARIQEGVE+L Y
Sbjct: 59 VEVVAQDFTVWGGSLGPAHGFKITRAMELAIKEGEPLIGINDSGGARIQEGVENLRGYGL 118
Query: 162 VFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKSVTNED 221
+F N ASGV+PQISL+ GPCAGG YSPA+ DF MV+ +S +F+TGPDV+K VT E+
Sbjct: 119 IFGANSRASGVIPQISLVTGPCAGGGAYSPALGDFIIMVKGTSPMFLTGPDVVKKVTGEE 178
Query: 222 ISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLPM--NNTQKPPIRRC----- 274
++ EELGGA H + SGVAH S+D DA+ +R LL +LP NN + PI
Sbjct: 179 VTSEELGGADQHMTKSGVAHLTASDDEDALALIRKLLSYLPKASNNMEPVPIVPTGDPPD 238
Query: 275 -----------------YDSR----------EFFEIQPKYAKNIIVGFARINGHSVGIVA 307
YD R FFE + YAK ++ GFAR+ G VG+VA
Sbjct: 239 RDVEELVSIVPDDPKRPYDVREVIAGIVDEGSFFETKAGYAKTVVTGFARLGGIPVGVVA 298
Query: 308 NQPKVAA 314
NQP+V A
Sbjct: 299 NQPRVLA 305
Score = 36.5 bits (85), Expect = 0.016
Identities = 36/149 (24%), Positives = 52/149 (34%), Gaps = 36/149 (24%)
Query: 52 RERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTV 111
RE + + D G+F E K +VVTG + G V + + V
Sbjct: 259 REVIAGIVDEGSFFET---------------KAGYAKTVVTGFARLGGIPVGVVANQPRV 303
Query: 112 FGGSLSSVHAEKICK-IMDQAMLTGAPIVGLND----SGGAR------IQEGVESLAAYS 160
G L A+K + I D P+V L D G ++ G + L A
Sbjct: 304 LAGVLFIDSADKAARFIRDCDAF-NIPLVILVDVPGFLPGTDQEYGGILKHGAKLLYAL- 361
Query: 161 SVFQRNILASGVVPQISLILGPCAGGAVY 189
A VP+I++I GGA
Sbjct: 362 --------AEATVPKITVIPRKAYGGAYV 382
>gnl|CDD|178415 PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.
Length = 569
Score = 152 bits (385), Expect = 5e-42
Identities = 95/328 (28%), Positives = 157/328 (47%), Gaps = 47/328 (14%)
Query: 23 QIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGT-FVEYDMFMEHRCVDFNMS 81
++ S A GGG ++++ ++ KL RER++ L DPG+ F+E H +
Sbjct: 56 ELRSHVAKVRAGGGPEAVKRHRSRNKLLPRERIDRLLDPGSPFLELSQLAGH-----ELY 110
Query: 82 EKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGL 141
+ +P +VTG G V+GR + D TV GG+ + +K + + A P + L
Sbjct: 111 GEDLPSGGIVTGIGPVHGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCRLPCIYL 170
Query: 142 NDSGGARIQEGVESLA---AYSSVF-QRNILASGVVPQISLILGPCAGGAVYSPAITDFT 197
DSGGA + E + +F + ++S +PQI+L+LG C G Y PA+ D +
Sbjct: 171 VDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCTAGGAYVPAMADES 230
Query: 198 FMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQ----- 252
+V+ + +F+ GP ++K+ T E++S E+LGGA H VSGV+ + +++ A+
Sbjct: 231 VIVKGNGTIFLAGPPLVKAATGEEVSAEDLGGADVHCKVSGVSDHFAQDELHALAIGRNI 290
Query: 253 ----------------------------NVRHLLGFLPMNNTQKPPIR----RCYDSREF 280
+V+ L G +P ++ Q +R R D EF
Sbjct: 291 VKNLHLAAKQGMENTLGSKNPEYKEPLYDVKELRGIVPADHKQSFDVRSVIARIVDGSEF 350
Query: 281 FEIQPKYAKNIIVGFARINGHSVGIVAN 308
E + Y ++ GFARI G VGI+ N
Sbjct: 351 DEFKKNYGTTLVTGFARIYGQPVGIIGN 378
Score = 28.6 bits (64), Expect = 5.1
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 18/126 (14%)
Query: 83 KKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGS-LSSVHAEKICKIMDQAMLTGAPIVGL 141
KK G ++VTG + G+ V I + +F S L H ++C G P++ L
Sbjct: 354 KKNYGTTLVTGFARIYGQPVGIIGNNGILFTESALKGAHFIELCA------QRGIPLLFL 407
Query: 142 NDSGGARIQEGVE-SLAAYSSVFQRNILASGVVPQISLILGPCAG-------GAVYSPAI 193
+ G + E S A + +A VP+I++I+G G G YSP
Sbjct: 408 QNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYGMCGRAYSP-- 465
Query: 194 TDFTFM 199
+F FM
Sbjct: 466 -NFLFM 470
>gnl|CDD|129606 TIGR00515, accD, acetyl-CoA carboxylase, carboxyl transferase, beta
subunit. The enzyme acetyl-CoA carboxylase contains a
biotin carboxyl carrier protein or domain, a biotin
carboxylase, and a carboxyl transferase. This model
represents the beta chain of the carboxyl transferase
for cases in which the architecture of the protein is as
in E. coli, in which the carboxyltransferase portion
consists of two non-identical subnits, alpha and beta
[Fatty acid and phospholipid metabolism, Biosynthesis].
Length = 285
Score = 93.3 bits (232), Expect = 4e-22
Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 17/190 (8%)
Query: 48 KLTARERVELLCDPGTFVEYDMFMEH----RCVDFNMSEKKIPG--------DSVVTGRG 95
++ ARER+E L D G+F E++ +E + D + +I D+VVTG+G
Sbjct: 56 RMDARERIESLLDEGSFEEFNSHLEPKDPLKFKDSKKYKDRIAKAQKETGEKDAVVTGKG 115
Query: 96 SVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVES 155
++ G + + DF GGS+ SV EK + +++A+ P++ + SGGAR+QE + S
Sbjct: 116 TLYGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALEDNCPLIIFSASGGARMQEALLS 175
Query: 156 L---AAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPD 212
L A S+ + ++ +P IS++ P GG S A+ + E + + GP
Sbjct: 176 LMQMAKTSAALAK--MSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR 233
Query: 213 VIKSVTNEDI 222
VI+ E +
Sbjct: 234 VIEQTVREKL 243
>gnl|CDD|223848 COG0777, AccD, Acetyl-CoA carboxylase beta subunit [Lipid
metabolism].
Length = 294
Score = 93.1 bits (232), Expect = 6e-22
Identities = 67/189 (35%), Positives = 101/189 (53%), Gaps = 17/189 (8%)
Query: 48 KLTARERVELLCDPGTFVEYDMFMEHR-CVDFNMSEK---------KIPG--DSVVTGRG 95
+++ARER+E L D G+F E D +E + + F S+K K G D+VVTG G
Sbjct: 58 RISARERLEALLDEGSFEELDSPLEPKDPLKFPDSKKYKDRLEAARKKTGLDDAVVTGEG 117
Query: 96 SVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVES 155
++NG V + DF GGS+ SV EKI + +++A+ P+V + SGGAR+QEG+ S
Sbjct: 118 TINGLPVVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDKLPLVLFSASGGARMQEGILS 177
Query: 156 L---AAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPD 212
L A S+ +R L+ +P IS++ P GG S A+ + E + + GP
Sbjct: 178 LMQMAKTSAALKR--LSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPR 235
Query: 213 VIKSVTNED 221
VI+ E
Sbjct: 236 VIEQTIREK 244
>gnl|CDD|235547 PRK05654, PRK05654, acetyl-CoA carboxylase subunit beta; Validated.
Length = 292
Score = 88.3 bits (220), Expect = 3e-20
Identities = 55/154 (35%), Positives = 88/154 (57%), Gaps = 17/154 (11%)
Query: 48 KLTARERVELLCDPGTFVEYDMFMEH----RCVDFNMSEKKIPG--------DSVVTGRG 95
+++ARER++LL D G+FVE D +E + D + ++ D+VVTG+G
Sbjct: 57 RISARERLDLLLDEGSFVELDAELEPKDPLKFRDSKKYKDRLKAAQKKTGLKDAVVTGKG 116
Query: 96 SVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVES 155
++ G V + DF+ GGS+ SV EKI + +++A+ P+V + SGGAR+QEG+ S
Sbjct: 117 TIEGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEEKCPLVIFSASGGARMQEGLLS 176
Query: 156 L---AAYSSVFQRNILASGVVPQISLILGPCAGG 186
L A S+ +R L+ +P IS++ P GG
Sbjct: 177 LMQMAKTSAALKR--LSEAGLPYISVLTDPTTGG 208
>gnl|CDD|188285 TIGR03133, malonate_beta, malonate decarboxylase, beta subunit.
Members of this protein family are the beta subunit of
malonate decarboxylase. Malonate decarboxylase may be a
soluble enzyme, or linked to membrane subunits and
active as a sodium pump. In the malonate decarboxylase
complex, the beta subunit appears to act as a
malonyl-CoA decarboxylase.
Length = 274
Score = 78.5 bits (194), Expect = 8e-17
Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 20/183 (10%)
Query: 49 LTARERVELLCDPGTFVEY----DMFMEHRCVDFNMSEKKIPG---DSVVTGRGSVNGRT 101
ARER L D G+F E D + I D VV GRG+++G+
Sbjct: 6 ANARERARGLLDAGSFRELLGPFDRVISPHLALLG-----IVPQFDDGVVVGRGTIDGKP 60
Query: 102 VFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTG-----APIVGLNDSGGARIQEGVESL 156
V + +Q+ GGS+ VH KI + A+ +V L ++GG R+QE L
Sbjct: 61 VVVIAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLETGGVRLQEANAGL 120
Query: 157 AAYSSVFQRNILASGVVPQISLILGP--CAGGAVYSPAITDFTFMVEHSSYLFITGPDVI 214
A + + + + A VP I +I G C GG + + + M E L ++GP+VI
Sbjct: 121 IAIAEIMRAILDARAAVPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGR-LGLSGPEVI 179
Query: 215 KSV 217
+
Sbjct: 180 EQE 182
>gnl|CDD|235954 PRK07189, PRK07189, malonate decarboxylase subunit beta; Reviewed.
Length = 301
Score = 78.4 bits (194), Expect = 1e-16
Identities = 55/181 (30%), Positives = 84/181 (46%), Gaps = 22/181 (12%)
Query: 49 LTARERVELLCDPGTFVEY----DMFMEHRCVDFNMSEKKIPG---DSVVTGRGSVNGRT 101
+ARER L D G+F E + M IP D VV G+G+++GR
Sbjct: 15 ASARERAAALLDAGSFRELLGPFERVMSPHLPLQG-----IPPQFDDGVVVGKGTLDGRP 69
Query: 102 VFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTG-----APIVGLNDSGGARIQEGVESL 156
V + +Q+ GGS+ VH K+ ++ A ++ L ++GG R+QE L
Sbjct: 70 VVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQEANAGL 129
Query: 157 AAYSSVFQRNIL-ASGVVPQISLILGP--CAGGAVYSPAITDFTFMVEHSSYLFITGPDV 213
AA + + R I+ VP I LI G C GG + A+ + + E L ++GP+V
Sbjct: 130 AAIAEI-MRAIVDLRAAVPVIGLIGGRVGCFGGMGIAAALCSYLIVSE-EGRLGLSGPEV 187
Query: 214 I 214
I
Sbjct: 188 I 188
>gnl|CDD|214384 CHL00174, accD, acetyl-CoA carboxylase beta subunit; Reviewed.
Length = 296
Score = 66.1 bits (162), Expect = 2e-12
Identities = 48/133 (36%), Positives = 69/133 (51%), Gaps = 16/133 (12%)
Query: 48 KLTARERVELLCDPGTFVEYDMFMEHRCV-DFNMSEK----------KIPG--DSVVTGR 94
K+++ +R+ELL DPGT+ D M +F+ E+ K G D+V TG
Sbjct: 68 KMSSSDRIELLIDPGTWNPMDEDMVSLDPIEFHSDEEPYKDRIDSYQKKTGLTDAVQTGI 127
Query: 95 GSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVE 154
G +NG V + DF GGS+ SV EKI ++++ A P++ + SGGAR+QEG
Sbjct: 128 GQLNGIPVALGVMDFQFMGGSMGSVVGEKITRLIEYATNESLPLIIVCASGGARMQEGSL 187
Query: 155 SL---AAYSSVFQ 164
SL A SS
Sbjct: 188 SLMQMAKISSALY 200
>gnl|CDD|183435 PRK12319, PRK12319, acetyl-CoA carboxylase subunit alpha;
Provisional.
Length = 256
Score = 38.2 bits (89), Expect = 0.003
Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 34/184 (18%)
Query: 37 TKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFME-HRCVDFNMSEKKIPGDSVVTGRG 95
+ ++ ++G+LT + L+ +D FME H D + + +VV G G
Sbjct: 5 ARILKEARDQGRLTTLDYATLI--------FDDFMELHG--DRHFRDDG----AVVGGIG 50
Query: 96 SVNGRTVFIFS-------QD--FTVFGGSLSSVHAE---KICKIMDQAMLTGAPIVGLND 143
+ G+ V + QD FG H E K ++M QA G P+V +
Sbjct: 51 YLAGQPVTVVGIQKGKNLQDNLKRNFG----QPHPEGYRKALRLMKQAEKFGRPVVTFIN 106
Query: 144 SGGARIQEGVESLAAYSSVFQRNILASG--VVPQISLILGPCAGGAVYSPAITDFTFMVE 201
+ GA G E ++ RN++ VP I++I+G G + A+ D +M+E
Sbjct: 107 TAGAYPGVGAEERGQGEAI-ARNLMEMSDLKVPIIAIIIGEGGSGGALALAVADQVWMLE 165
Query: 202 HSSY 205
++ Y
Sbjct: 166 NTMY 169
>gnl|CDD|223895 COG0825, AccA, Acetyl-CoA carboxylase alpha subunit [Lipid
metabolism].
Length = 317
Score = 37.6 bits (88), Expect = 0.005
Identities = 61/258 (23%), Positives = 95/258 (36%), Gaps = 67/258 (25%)
Query: 48 KLTARERVELLCDPG--TFVEYDMFMEHRCVDFNMSEKKIPGD-------SVVTGRGSVN 98
LT +RV+L P ++Y +E DF ++ GD ++V G
Sbjct: 53 NLTPWQRVQLARHPDRPYTLDY---IELLFTDF----VELHGDRAFADDPAIVGGLARFG 105
Query: 99 GRTVFIFSQD---------FTVFGGSLSSVHAE---KICKIMDQAMLTGAPIVGLNDSGG 146
G+ V + FG E K ++M A G PI+ D+ G
Sbjct: 106 GQPVVVIGHQKGRDTKEKLKRNFG----MPRPEGYRKALRLMKLAEKFGLPIITFIDTPG 161
Query: 147 ARIQEGVESLAAYSSVFQRNI--LASGVVPQISLILGP-CAGGAVYSPAITDFTFMVEHS 203
A G E S RN+ +A VP IS+++G +GGA+ + + D M+E+S
Sbjct: 162 AYPGIGAEERGQ-SEAIARNLREMARLKVPIISIVIGEGGSGGAL-AIGVADRVLMLENS 219
Query: 204 SY-----------LF--------------ITGPDVIKSVTNEDISQEELGGAKTHTSVSG 238
+Y L+ IT D+ + + I E LGGA H
Sbjct: 220 TYSVISPEGCASILWKDASKAKEAAEAMKITAHDLKELGIIDGIIPEPLGGA--HRDPEA 277
Query: 239 VAH---NAFSNDIDAIQN 253
A NA ++ +
Sbjct: 278 AAEALKNALLKELHELDK 295
>gnl|CDD|233004 TIGR00513, accA, acetyl-CoA carboxylase, carboxyl transferase,
alpha subunit. The enzyme acetyl-CoA carboxylase
contains a biotin carboxyl carrier protein or domain, a
biotin carboxylase, and a carboxyl transferase. This
model represents the alpha chain of the carboxyl
transferase for cases in which the architecture of the
protein is as in E. coli, in which the
carboxyltransferase portion consists of two
non-identical subnits, alpha and beta [Fatty acid and
phospholipid metabolism, Biosynthesis].
Length = 316
Score = 37.1 bits (86), Expect = 0.009
Identities = 36/147 (24%), Positives = 55/147 (37%), Gaps = 30/147 (20%)
Query: 123 KICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNI--LASGVVPQISLIL 180
K ++M A PI+ D+ GA G E S RN+ +A VP I ++
Sbjct: 139 KALRLMKMAERFKMPIITFIDTPGAYPGIGAEERGQ-SEAIARNLREMARLGVPVICTVI 197
Query: 181 GPCAGGAVYSPAITDFTFMVEHSSY-------------------------LFITGPDVIK 215
G G + + D M+E+S+Y + IT PD+ +
Sbjct: 198 GEGGSGGALAIGVGDKVNMLEYSTYSVISPEGCAAILWKDASKAPKAAEAMKITAPDLKE 257
Query: 216 SVTNEDISQEELGGAKTHTSVSGVAHN 242
+ I E LGGA H + A +
Sbjct: 258 LGLIDSIIPEPLGGA--HRNPLAAAAS 282
>gnl|CDD|214393 CHL00198, accA, acetyl-CoA carboxylase carboxyltransferase alpha
subunit; Provisional.
Length = 322
Score = 34.8 bits (80), Expect = 0.046
Identities = 38/136 (27%), Positives = 54/136 (39%), Gaps = 21/136 (15%)
Query: 89 SVVTGRGSVNGRT-VFIFSQ-----------DFTVFGGSLSSVHAEKICKIMDQAMLTGA 136
++V G G +NGRT VF+ Q +F G S K ++M A G
Sbjct: 100 ALVGGIGKINGRTIVFLGHQRGRNTKENVLRNF----GMPSPGGYRKALRLMKHANKFGL 155
Query: 137 PIVGLNDSGGARIQEGVESLA---AYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAI 193
PI+ D+ GA E L A + + + S VP I I+G G I
Sbjct: 156 PILTFIDTPGAWAGVKAEKLGQGEAIAVNLRE--MFSFEVPIICTIIGEGGSGGALGIGI 213
Query: 194 TDFTFMVEHSSYLFIT 209
D M+E++ Y T
Sbjct: 214 GDSIMMLEYAVYTVAT 229
>gnl|CDD|233957 TIGR02635, RhaI_grampos, L-rhamnose isomerase, Streptomyces
subtype. This clade of sequences is closely related to
the L-rhamnose isomerases found in Pseudomonas stutzeri
and in a number of the Rhizobiales (TIGR02629). The
genes of the family represented here are found in
similar genomic contexts which contain genes apparently
involved in rhamnose catabolism such as
rhamnulose-1-phosphate aldolase (TIGR02632), sugar
kinases, and sugar transporters [Energy metabolism,
Sugars].
Length = 378
Score = 31.7 bits (72), Expect = 0.45
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 13/98 (13%)
Query: 53 ERVELLCD-----PGTFVEY---DMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVF- 103
ER +L D GT +E+ + E + F+ + +K D + G ++N +F
Sbjct: 204 ERALVLVDTGHHAQGTNIEFIVATLLDEKKLGGFHFNSRKYADDDLTVG--AINPYELFL 261
Query: 104 IFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGL 141
IF + V G A + ++DQ I +
Sbjct: 262 IFKE--IVRAGRDPEDSASDVALMLDQCHNLEPKIPAM 297
>gnl|CDD|213364 cd12830, MtCorA-like, Mycobacterium tuberculosis CorA-like
subfamily. This bacterial subfamily belongs to the
Thermotoga maritima CorA (TmCorA)-like family of the MIT
superfamily of essential membrane proteins involved in
transporting divalent cations (uptake or efflux) across
membranes. This subfamily includes the Mg2+ transporter
Mycobacterium tuberculosis CorA (which also transports
Co2+). Thermotoga maritima CorA forms funnel-shaped
homopentamers, the tip of the funnel is formed from two
C-terminal transmembrane (TM) helices from each monomer,
and the large opening of the funnel from the N-terminal
cytoplasmic domains. The GMN signature motif of the MIT
superfamily occurs just after TM1, mutation within this
motif is known to abolish Mg2+ transport by a related
protein, Saccharomyces cerevisiae Alr1p. Natural
variants in this signature sequence may be associated
with the transport of different divalent cations. The
functional diversity of the MIT superfamily may also be
due to minor structural differences regulating gating,
substrate selection, and transport.
Length = 292
Score = 30.6 bits (70), Expect = 0.96
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 13 DV-DHLMRVRGQIDSMRAI---ALQGGGTKSIQAQHN 45
DV DHL+RV ++DS+R + ALQ + Q N
Sbjct: 194 DVADHLLRVADRVDSLRELLSSALQANLAL-VSVQQN 229
>gnl|CDD|237167 PRK12667, PRK12667, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 520
Score = 29.2 bits (66), Expect = 2.8
Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 22/125 (17%)
Query: 109 FTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNIL 168
+T+FG S S + + ++ GA + + + +Q+ V+ L AYS++ +
Sbjct: 278 YTIFGISPSLIDFRAALSPI--LIILGA-VSAIIGALMMVVQKDVKRLLAYSTISHMGYI 334
Query: 169 ASGVVPQISLILGPCAGGAVYSPAITDFTF-MVEHS---SYLFITGPDVIKSVTNEDISQ 224
G+ G + F ++ H+ S LF+ I + DI
Sbjct: 335 FMGI-------------GIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDI-- 379
Query: 225 EELGG 229
+EL G
Sbjct: 380 DELAG 384
>gnl|CDD|178768 PLN03229, PLN03229, acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha; Provisional.
Length = 762
Score = 29.4 bits (66), Expect = 3.0
Identities = 47/206 (22%), Positives = 83/206 (40%), Gaps = 50/206 (24%)
Query: 70 FMEHRCVDFNMSEK--KIPGD-------SVVTGRGSVNGRT-VFIFSQD--------FTV 111
F++H FN+++K ++ GD ++VTG G+++G+ +FI Q
Sbjct: 163 FLDHI---FNITDKFVELHGDRAGYDDPAIVTGIGTIDGKRYMFIGHQKGRNTKENIMRN 219
Query: 112 FGGSLSSVHA-EKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILAS 170
FG + + H K ++M A G PIV D+ GA E L ++
Sbjct: 220 FG--MPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMF 277
Query: 171 GV-VPQISLILGPCAGGAVYSPAITDFTFMVEHSSY------------------------ 205
G+ VP +S+++G G + + M+E++ +
Sbjct: 278 GLKVPIVSIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKSAKAAPKAAE 337
Query: 206 -LFITGPDVIKSVTNEDISQEELGGA 230
L IT ++ + + I E LGGA
Sbjct: 338 KLRITAQELCRLQIADGIIPEPLGGA 363
>gnl|CDD|220822 pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and
lipid transport. This family contains polyketide
cylcases/dehydrases which are enzymes involved in
polyketide synthesis. It also includes other proteins
of the START superfamily.
Length = 140
Score = 28.2 bits (63), Expect = 3.7
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 13 DVDHLMRVRGQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDM 69
D ++ R + + GG + G T RE + G +EY +
Sbjct: 23 DFENWPRWHPGVLRVELEG--GGPLGVVGTLRAGGGRTVREELVEYDPAGRRLEYRI 77
>gnl|CDD|220003 pfam08752, Gamma-COP, Coatomer gamma subunit appendage domain.
COPI-coated vesicles function in retrograde transport
from the Golgi to the ER, and in intra-Golgi transport.
This domain corresponds to the coatomer gamma subunit
appendage domain. It contains a protein-protein
interaction site and a second proposed binding site that
interacts with the alpha, beta,epsilon COPI subcomplex.
Length = 269
Score = 27.6 bits (62), Expect = 7.3
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 10/71 (14%)
Query: 206 LFITGPDVIKSVTNEDISQ--EELGGAKTHTSVSGVAHNAFSNDI---DAIQNVRHLLGF 260
L + D I+ + + +EL + SN +A+ + LLG
Sbjct: 149 LELNVSDFIQPLRVGNFKAAWDELPNEHEAVET-----FSLSNVKSLQEAVNKLVELLGM 203
Query: 261 LPMNNTQKPPI 271
P + + P
Sbjct: 204 QPCDGSDYVPS 214
>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional.
Length = 269
Score = 27.7 bits (62), Expect = 8.6
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 129 DQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVF--QRNILASGVVPQISLILGPCAGG 186
++A ++GA I S + E++AAY + LA P I+ I G C GG
Sbjct: 66 EKAFVSGADI-----SQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGG 120
Query: 187 AV 188
+
Sbjct: 121 GM 122
>gnl|CDD|216171 pfam00883, Peptidase_M17, Cytosol aminopeptidase family, catalytic
domain. The two associated zinc ions and the active
site are entirely enclosed within the C-terminal
catalytic domain in leucine aminopeptidase.
Length = 311
Score = 27.6 bits (62), Expect = 9.5
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 86 PGDSVVTGRGSVNGRTVFIFSQDFT---VFGGSLSSVHAEKICKIMDQAMLTGAPIVGL- 141
PGD ++T NG+TV + + D V +L+ I+D A LTGA +V L
Sbjct: 150 PGD-IITAM---NGKTVEVNNTDAEGRLVLADALTYACELNPEVIIDVATLTGACVVALG 205
Query: 142 NDSGGA 147
G
Sbjct: 206 TTYTGI 211
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.397
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,063,489
Number of extensions: 1538387
Number of successful extensions: 1326
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1306
Number of HSP's successfully gapped: 32
Length of query: 314
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 217
Effective length of database: 6,635,264
Effective search space: 1439852288
Effective search space used: 1439852288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)