RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11283
(314 letters)
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis,
accase, ligase, transferase; 2.2A {Mycobacterium
tuberculosis} PDB: 2a7s_A
Length = 548
Score = 536 bits (1382), Expect = 0.0
Identities = 163/330 (49%), Positives = 205/330 (62%), Gaps = 38/330 (11%)
Query: 23 QIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSE 82
++ R +L G +++ H KGKLTARER+ L D +FVE D +HR +FN+ E
Sbjct: 31 ELHKRREESLHPVGEDAVEKVHAKGKLTARERIYALLDEDSFVELDALAKHRSTNFNLGE 90
Query: 83 KKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLN 142
K+ GD VVTG G+++GR V IFSQD TVFGGSL V+ EKI K+ + A+ TG P++G+N
Sbjct: 91 KRPLGDGVVTGYGTIDGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTGRPLIGIN 150
Query: 143 DSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEH 202
D GARIQEGV SL YS +F+ NILASGV+PQISLI+G AGG VYSPA+TDF MV+
Sbjct: 151 DGAGARIQEGVVSLGLYSRIFRNNILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQ 210
Query: 203 SSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLP 262
+S +FITGPDVIK+VT E+++ EELGGA TH + SG AH A S + DA VR LL +LP
Sbjct: 211 TSQMFITGPDVIKTVTGEEVTMEELGGAHTHMAKSGTAHYAASGEQDAFDYVRELLSYLP 270
Query: 263 MNNTQKPPIRRC-----------------------------YDSRE---------FFEIQ 284
NN+ P + YD E F EIQ
Sbjct: 271 PNNSTDAPRYQAAAPTGPIEENLTDEDLELDTLIPDSPNQPYDMHEVITRLLDDEFLEIQ 330
Query: 285 PKYAKNIIVGFARINGHSVGIVANQPKVAA 314
YA+NI+VGF RI+G VGIVANQP A
Sbjct: 331 AGYAQNIVVGFGRIDGRPVGIVANQPTHFA 360
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Roseobacter denitrificans}
Length = 531
Score = 532 bits (1373), Expect = 0.0
Identities = 193/324 (59%), Positives = 237/324 (73%), Gaps = 32/324 (9%)
Query: 23 QIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSE 82
Q++ RA A GGG K I AQH +GKLTARERV+LL D G+F E+DMF+ HRC DFNM +
Sbjct: 28 QLEDRRAAARLGGGQKRIDAQHGRGKLTARERVDLLLDEGSFEEFDMFVTHRCTDFNMQD 87
Query: 83 KKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLN 142
+K GD VVTG G++NGR V++FSQDFTV GGS+S H++KICKIMD AM GAP++G+N
Sbjct: 88 QKPAGDGVVTGWGTINGRVVYVFSQDFTVLGGSVSETHSKKICKIMDMAMQNGAPVIGIN 147
Query: 143 DSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEH 202
DSGGARIQEGV+SLA Y VFQRNI+ASGVVPQIS+I+GPCAGGAVYSPA+TDF FMV+
Sbjct: 148 DSGGARIQEGVDSLAGYGEVFQRNIMASGVVPQISMIMGPCAGGAVYSPAMTDFIFMVKD 207
Query: 203 SSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLP 262
SSY+F+TGPDV+K+VTNE +S EELGGA THT S VA AF ND++A+ VR L+ FLP
Sbjct: 208 SSYMFVTGPDVVKTVTNEQVSAEELGGATTHTRKSSVADAAFENDVEALAEVRRLVDFLP 267
Query: 263 MNNTQKPPIRRC----------------------YDSRE----------FFEIQPKYAKN 290
+NN +KPP+R YD +E F+EIQ ++AKN
Sbjct: 268 LNNREKPPVRPFFDDPDRIEPSLDTLVPDNPNTPYDMKELIHKLADEGDFYEIQEEFAKN 327
Query: 291 IIVGFARINGHSVGIVANQPKVAA 314
II GF R+ G +VG+VANQP V A
Sbjct: 328 IITGFIRLEGRTVGVVANQPLVLA 351
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint
center for structural genomics, JCSG, protein structu
initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima}
SCOP: c.14.1.4 c.14.1.4
Length = 527
Score = 532 bits (1372), Expect = 0.0
Identities = 176/337 (52%), Positives = 224/337 (66%), Gaps = 34/337 (10%)
Query: 12 NDVDHLMRVRGQID---SMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYD 68
+ H M +R +I+ + QGGG + ++ QH GKLTA ER+ELL DPGTFVE D
Sbjct: 7 HHHHHHMSLRDKIEELKKIEKEIEQGGGPEKVEKQHRAGKLTAWERLELLLDPGTFVEID 66
Query: 69 MFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIM 128
F+EHR F + + K+P D V+TG G +NGR V +FSQDFTV GGSL +HA+KI K++
Sbjct: 67 KFVEHRNTYFGLDKVKLPRDGVITGVGEINGRKVAVFSQDFTVMGGSLGEMHAKKIVKLL 126
Query: 129 DQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAV 188
D A+ G P++G+NDSGGARIQEGV++LA Y +F RN LASGVVPQI++I GPCAGGAV
Sbjct: 127 DLALKMGIPVIGINDSGGARIQEGVDALAGYGEIFLRNTLASGVVPQITVIAGPCAGGAV 186
Query: 189 YSPAITDFTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDI 248
YSPA+TDF MV+ ++ +FITGP+VIK+VT E+ISQE+LGGA H SG AH ND
Sbjct: 187 YSPALTDFIVMVDQTARMFITGPNVIKAVTGEEISQEDLGGAMVHNQKSGNAHFLADNDE 246
Query: 249 DAIQNVRHLLGFLPMNNTQKPP-------------------------------IRRCYDS 277
A+ VR LL +LP NN ++PP I+R D
Sbjct: 247 KAMSLVRTLLSYLPSNNAEEPPVEDPDTSLETPEDILDILPDNPNKGYDVRDVIKRVVDH 306
Query: 278 REFFEIQPKYAKNIIVGFARINGHSVGIVANQPKVAA 314
EFFE+QP +AKNI++GFARI G +VGIVANQP V A
Sbjct: 307 GEFFEVQPYFAKNIVIGFARIQGKTVGIVANQPSVLA 343
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC,
PCC, CT, carboxyltransfe polyketide, fatty acid, PKS,
FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A*
3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A
Length = 530
Score = 531 bits (1371), Expect = 0.0
Identities = 169/326 (51%), Positives = 213/326 (65%), Gaps = 34/326 (10%)
Query: 23 QIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSE 82
+ A G ++++ QH KGKLTARER++LL D G+FVE D F HR +F +
Sbjct: 20 DLRRRIEEATHAGSARAVEKQHAKGKLTARERIDLLLDEGSFVELDEFARHRSTNFGLDA 79
Query: 83 KKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLN 142
+ GD VVTG G+V+GR V +FSQDFTVFGG+L V+ +KI K+MD A+ TG P+VG+N
Sbjct: 80 NRPYGDGVVTGYGTVDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGIN 139
Query: 143 DSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEH 202
DSGGARIQEGV SL AY +F+RN ASGV+PQISL++GPCAGGAVYSPAITDFT MV+
Sbjct: 140 DSGGARIQEGVASLGAYGEIFRRNTHASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQ 199
Query: 203 SSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLP 262
+S++FITGPDVIK+VT ED+ EELGGA+TH S SGVAH+ ++ DA++ V+ LL +LP
Sbjct: 200 TSHMFITGPDVIKTVTGEDVGFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYLP 259
Query: 263 MNNTQKPP----------------------------------IRRCYDSREFFEIQPKYA 288
NN +PP I D EFFE QP +A
Sbjct: 260 SNNLSEPPAFPEEADLAVTDEDAELDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFA 319
Query: 289 KNIIVGFARINGHSVGIVANQPKVAA 314
NI+ GF R+ G VGIVANQP A
Sbjct: 320 PNILTGFGRVEGRPVGIVANQPMQFA 345
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A
{Sulfolobus tokodaii}
Length = 522
Score = 529 bits (1365), Expect = 0.0
Identities = 148/325 (45%), Positives = 203/325 (62%), Gaps = 33/325 (10%)
Query: 23 QIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSE 82
++ ++ A +GGG + IQ QH+KGKLTARER+ LL D G F E F R +F + +
Sbjct: 14 ELRQLKEKAYKGGGDERIQFQHSKGKLTARERLALLFDDGKFNEIMTFATTRATEFGLDK 73
Query: 83 KKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLN 142
++ GD VVTG G V+GRTVF ++QDFTV GGSL HA KI + + A+ GAP+VG+N
Sbjct: 74 QRFYGDGVVTGWGKVDGRTVFAYAQDFTVLGGSLGETHANKIVRAYELALKVGAPVVGIN 133
Query: 143 DSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVE- 201
DSGGARIQEG SL Y +VF+ N++ASGV+PQI+++ GP AGGAVYSPA+TDF M++
Sbjct: 134 DSGGARIQEGALSLEGYGAVFKMNVMASGVIPQITIMAGPAAGGAVYSPALTDFIIMIKG 193
Query: 202 HSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFL 261
+ Y+F+TGP++ K V E++S ++LGGA H + SGV H ++ +AI + LL +L
Sbjct: 194 DAYYMFVTGPEITKVVLGEEVSFQDLGGAVVHATKSGVVHFMVDSEQEAINLTKRLLSYL 253
Query: 262 PMNNTQKPPIRRC----------------------YDSRE----------FFEIQPKYAK 289
P NN ++PP Y+ RE F E+ +A+
Sbjct: 254 PSNNMEEPPYIDTGDPADRDATGVEQIVPNDAAKPYNMREIIYKIVDNGEFLEVHKHWAQ 313
Query: 290 NIIVGFARINGHSVGIVANQPKVAA 314
NIIVGFARI G+ VGIVAN P+
Sbjct: 314 NIIVGFARIAGNVVGIVANNPEEFG 338
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain
duplication, multienzyme complex, transcarboxylase; HET:
MCA; 1.90A {Propionibacterium freudenreichii} SCOP:
c.14.1.4 c.14.1.4 PDB: 1on9_A*
Length = 523
Score = 528 bits (1363), Expect = 0.0
Identities = 144/323 (44%), Positives = 194/323 (60%), Gaps = 32/323 (9%)
Query: 23 QIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSE 82
Q+ R + GGG + ++ QH++GK TARER+ L DP +F E F +HR F M +
Sbjct: 18 QLAEQRQVIEAGGGERRVEKQHSQGKQTARERLNNLLDPHSFDEVGAFRKHRTTLFGMDK 77
Query: 83 KKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLN 142
+P D VVTGRG++ GR V SQDFTV GGS + K+ + M+QA+LTG P +
Sbjct: 78 AVVPADGVVTGRGTILGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFY 137
Query: 143 DSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEH 202
DSGGARIQEG++SL+ Y +F N+ SGVVPQI++I GPCAGGA YSPA+TDF M +
Sbjct: 138 DSGGARIQEGIDSLSGYGKMFFANVKLSGVVPQIAIIAGPCAGGASYSPALTDFIIMTK- 196
Query: 203 SSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLP 262
+++FITGP VIKSVT ED++ +ELGGA+ H ++SG H +D A + LL FLP
Sbjct: 197 KAHMFITGPQVIKSVTGEDVTADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFLP 256
Query: 263 MNNTQKPPIRRC---------------------YDSRE----------FFEIQPKYAKNI 291
NNT++ YD R+ + E++ YA N+
Sbjct: 257 QNNTEEASFVNPNNDVSPNTELRDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNL 316
Query: 292 IVGFARINGHSVGIVANQPKVAA 314
+ FAR+NG SVGIVANQP V +
Sbjct: 317 VTAFARVNGRSVGIVANQPSVMS 339
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid
synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A*
3tdc_A*
Length = 793
Score = 388 bits (999), Expect = e-130
Identities = 60/328 (18%), Positives = 112/328 (34%), Gaps = 61/328 (18%)
Query: 28 RAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPG 87
R + G + RV L + G + ++H + + P
Sbjct: 133 RIGSFGPGEDLLYLRASELARAEGIPRVYLAANSGARIGLAEEIKHMFQVA-WVDPEDPH 191
Query: 88 DSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGA 147
+ + +++ QD+T SL+SVH + + + G + D G
Sbjct: 192 KGI---------KYLYLTPQDYTRIS-SLNSVHCKHVEE-------DGESRYVITDIIGK 234
Query: 148 RIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLF 207
GVE+L + + IS++ G Y + VE+ S++
Sbjct: 235 EEGLGVENLRGSGMIAGETSQDYDEIVTISMVSCRALGIGAYLVRLGQRVIQVEN-SHII 293
Query: 208 ITGPDVIKSVTNEDI--SQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLPMNN 265
+TG + V D+ S +LGG + +GV+H +D + + + L ++P +N
Sbjct: 294 LTGATALNKVLGRDVYTSNNQLGGVQIM-HHNGVSHVTVPDDFEGVCTILEWLSYMPKDN 352
Query: 266 TQKPPIRRC----------------YDSR-----------------------EFFEIQPK 286
P+ YD R F EI
Sbjct: 353 RSPVPVVTPKDPIDREIEFQPSRGPYDPRWLLAGRPHPTLKGSWQSGFFDQGSFKEIMVP 412
Query: 287 YAKNIIVGFARINGHSVGIVANQPKVAA 314
+A+ ++ G AR+ G VG++A + +
Sbjct: 413 WAQTVVTGRARLGGIPVGVIAAETRTVE 440
Score = 60.6 bits (147), Expect = 2e-10
Identities = 26/109 (23%), Positives = 37/109 (33%), Gaps = 8/109 (7%)
Query: 41 QAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGR 100
++ K LT E V L G VE + + M + + GR
Sbjct: 70 PDKYPKDILTYTELV--LDPQGQLVEMNRLPGGN--EVGM----VAFKMTLKTLEYPEGR 121
Query: 101 TVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARI 149
+ + S D T GS + + A G P V L + GARI
Sbjct: 122 DIILISNDITFRIGSFGPGEDLLYLRASELARAEGIPRVYLAANSGARI 170
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport,
biotin, glutamate fermentation, lyase; HET: COO; 1.75A
{Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Length = 588
Score = 359 bits (923), Expect = e-121
Identities = 67/339 (19%), Positives = 121/339 (35%), Gaps = 62/339 (18%)
Query: 28 RAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPG 87
G S + + +G+L+A +R+ L DPGT+ + F
Sbjct: 41 SIKKALDAGITSEEKLNERGQLSAMQRINALIDPGTWCPLNSLFNPENNKF-------GT 93
Query: 88 DSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGA 147
++V G G V+G+ V+I + D G+ AE + + D A + P++ L + G
Sbjct: 94 TNIVNGLGRVDGKWVYIVASDNKKMAGAWVPGQAENLIRCSDAAKMMHLPLIYLLNCSGV 153
Query: 148 RI--QEGV-ESLAAYSSVFQRN-ILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHS 203
Q+ V + + F RN L +P I I G G Y +I+ +
Sbjct: 154 EFPNQDKVYPNRRGGGTPFFRNSELNQLGIPVIVGIYGTNPAGGGY-HSISPTILIAHQD 212
Query: 204 SYLFITGPDVIKS--------------VTNEDISQEE-----LGGAKTHTSVSGVAHNAF 244
+ + + G ++ + I + G H +G +
Sbjct: 213 ANMAVGGAGILSGMNPKGYIDDEAAEQIIAAQIENSKLKVPAPGSVPIHYDETGFFREVY 272
Query: 245 SNDIDAIQNVRHLLGFLPMNNTQKPP-------------------------------IRR 273
ND+ I ++ + +LP N + I R
Sbjct: 273 QNDLGVIDGIKKYISYLPAYNLEFFRVDTPKAPQLPAEDLYSIIPMNQKRPYDIYEVIAR 332
Query: 274 CYDSREFFEIQPKYAKNIIVGFARINGHSVGIVANQPKV 312
+D+ EF E + Y ++ G A++NG VG++AN +
Sbjct: 333 LFDNSEFSEYKKGYGPEMVTGLAKVNGLLVGVIANVQGL 371
Score = 30.4 bits (69), Expect = 0.80
Identities = 32/175 (18%), Positives = 51/175 (29%), Gaps = 51/175 (29%)
Query: 52 RERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFI------- 104
E + L D F EY KK G +VTG VNG V +
Sbjct: 327 YEVIARLFDNSEFSEY---------------KKGYGPEMVTGLAKVNGLLVGVIANVQGL 371
Query: 105 ------FSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGG---ARIQE---- 151
+ Q+ GG L K+ + + P++ L D+ G E
Sbjct: 372 LMNYPEYKQNSVGIGGKLYRQGLIKMNEFVTLCARDRIPLIWLQDTTGIDVGDEAEKAEL 431
Query: 152 ---GVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVY---SPAIT-DFTFM 199
G + + + +P + + + + A Y P F
Sbjct: 432 LGLGQSLIYSIENS---------KLPSLEITIRKASAAAHYVLGGPQGNNTNVFS 477
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump,
carboxyltransferase, lyase; 2.20A {Acidaminococcus
fermentans} SCOP: c.14.1.4 c.14.1.4
Length = 587
Score = 352 bits (906), Expect = e-119
Identities = 65/352 (18%), Positives = 129/352 (36%), Gaps = 62/352 (17%)
Query: 15 DHLMRVRGQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHR 74
+ L ++ +I + A + G K+ + +G+LTA +R+E L +PG++ +
Sbjct: 29 EQLKKIEEEIHQLIKEAQEAG--KADADVNKRGELTALQRIEKLVEPGSWRPLNTL---- 82
Query: 75 CVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLT 134
FN K ++V G G VNG+ + + D G+ AE + + D A
Sbjct: 83 ---FNPQGNKNGSVAIVKGLGRVNGKWCVVVASDNKKLAGAWVPGQAECLLRASDTAKTL 139
Query: 135 GAPIVGLNDSGGARIQEGVESLAA---YSSVFQRNILASGV-VPQISLILGPCAGGAVYS 190
P+V + + G + E + + F RN + + +P I I G G Y
Sbjct: 140 HVPLVYVLNCSGVKFDEQEKVYPNRRGGGTPFFRNAELNQLGIPVIVGIYGTNPAGGGY- 198
Query: 191 PAITDFTFMVEHSSYLFITGPDVIKSVTN-----------------EDISQEELGGAKTH 233
+I+ + + + + G ++ + E G H
Sbjct: 199 HSISPTVIIAHEKANMAVGGAGIMGGMNPKGHVDLEYANEIADMVDRTGKTEPPGAVDIH 258
Query: 234 TSVSGVAHNAFSNDIDAIQNVRHLLGFLPMNNTQKPPI---------------------R 272
+ +G ++++ ++ ++ +G LP + + + +
Sbjct: 259 YTETGFMREVYASEEGVLEGIKKYVGMLPKYDPEFFRVDDPKAPAFPADDLYSMVPLNDK 318
Query: 273 RCYDSRE----------FFEIQPKYAKNIIVGFARINGHSVGIVANQPKVAA 314
R YD E + Y ++ G A++NG VG+VAN +
Sbjct: 319 RAYDIYNVIARLFDNSELHEYKKGYGPEMVTGLAKVNGLLVGVVANVQGLLM 370
Score = 30.4 bits (69), Expect = 0.78
Identities = 32/176 (18%), Positives = 46/176 (26%), Gaps = 52/176 (29%)
Query: 52 RERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFI------- 104
+ L D EY KK G +VTG VNG V +
Sbjct: 324 YNVIARLFDNSELHEY---------------KKGYGPEMVTGLAKVNGLLVGVVANVQGL 368
Query: 105 -------FSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGG---ARIQE--- 151
+ GG L K+ + + PIV + D+ G E
Sbjct: 369 LMNYPEYKAAGSVGIGGKLYRQGLVKMNEFVTLCARDRLPIVWIQDTTGIDVGNDAEKAE 428
Query: 152 ----GVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVY---SPAIT-DFTFM 199
G + + + +PQ + L A Y P F
Sbjct: 429 LLGLGQSLIYSIQTS---------HIPQFEITLRKGTAAAHYVLGGPQGNDTNAFS 475
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit;
carboxyltransferase, beta-BETA-alpha superhelix, ligase;
HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B*
3u9t_B
Length = 555
Score = 310 bits (797), Expect = e-102
Identities = 88/331 (26%), Positives = 144/331 (43%), Gaps = 41/331 (12%)
Query: 15 DHLMRVRGQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGT-FVEYDMFMEH 73
++ + ++ +GGG+ + +GKL RER+ L DPG+ F+E H
Sbjct: 40 ATMLEQVNALRTLLGRIHEGGGSAAQARHSARGKLLVRERINRLLDPGSPFLELSALAAH 99
Query: 74 RCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAML 133
+ +++ +V G G V G I D TV GG+ + +K + A+
Sbjct: 100 -----EVYGEEVAAAGIVAGIGRVEGVECMIVGNDATVKGGTYYPLTVKKHLRAQAIALE 154
Query: 134 TGAPIVGLNDSGGARI---QEGVESLAAYSSVFQRNILASGV-VPQISLILGPCAGGAVY 189
P + L DSGGA + E + +F S +PQI++++G C G Y
Sbjct: 155 NRLPCIYLVDSGGANLPRQDEVFPDREHFGRIFFNQANMSARGIPQIAVVMGSCTAGGAY 214
Query: 190 SPAITDFTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDID 249
PA++D T MV + +F+ GP ++K+ T E +S EELGGA H VSGVA + +D
Sbjct: 215 VPAMSDETVMVREQATIFLAGPPLVKAATGEVVSAEELGGADVHCKVSGVADHYAEDDDH 274
Query: 250 AIQNVRHLLGFLPMNNTQKPPI---------------------RRCYDSRE--------- 279
A+ R + L + ++ YD RE
Sbjct: 275 ALAIARRCVANLNWRKQGQLQCRAPRAPLYPAEELYGVIPADSKQPYDVREVIARLVDGS 334
Query: 280 -FFEIQPKYAKNIIVGFARINGHSVGIVANQ 309
F E + + ++ GFA ++G+ + I+AN
Sbjct: 335 EFDEFKALFGTTLVCGFAHLHGYPIAILANN 365
Score = 27.9 bits (63), Expect = 4.8
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 291 IIVGFARINGHSVGIVANQPKVAA 314
I+ G R+ G IV N V
Sbjct: 111 IVAGIGRVEGVECMIVGNDATVKG 134
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC
tepraloxydim, ATP-binding, biotin, fatty acid
biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae}
PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A*
3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A*
1uyt_A 1uyv_A
Length = 758
Score = 275 bits (704), Expect = 5e-87
Identities = 39/250 (15%), Positives = 80/250 (32%), Gaps = 42/250 (16%)
Query: 102 VFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSS 161
+++ S+ ++ + ++ ++ G + G+ GVE L
Sbjct: 181 LYLTSEGMETLKK-----FDKENSVLTERTVINGEERFVIKTIIGSEDGLGVECLRGSGL 235
Query: 162 VFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKSVTNED 221
+ A + I+L+ G Y + VE + P + K + E
Sbjct: 236 IAGATSRAYHDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTGAPAINKMLGREV 295
Query: 222 ISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLPMNNTQKPPIRRC------- 274
+ G +GV+H +D+ ++ + + ++P PI
Sbjct: 296 YTSNLQLGGTQIMYNNGVSHLTAVDDLAGVEKIVEWMSYVPAKRNMPVPILETKDTWDRP 355
Query: 275 ----------YDSRE--------------------FFEIQPKYAKNIIVGFARINGHSVG 304
YD R FFE +AK ++VG AR+ G +G
Sbjct: 356 VDFTPTNDETYDVRWMIEGRETESGFEYGLFDKGSFFETLSGWAKGVVVGRARLGGIPLG 415
Query: 305 IVANQPKVAA 314
++ + +
Sbjct: 416 VIGVETRTVE 425
Score = 55.6 bits (134), Expect = 9e-09
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 83 KKIPGD---SVVTGRGSV------NGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAML 133
++ PG +V + +V GR + + D T GS E K+ + A
Sbjct: 79 EREPGANAIGMVAFKITVKTPEYPRGRQFVVVANDITFKIGSFGPQEDEFFNKVTEYARK 138
Query: 134 TGAPIVGLNDSGGARIQEGVESLAAYS 160
G P + L + GARI E + +
Sbjct: 139 RGIPRIYLAANSGARIGMAEEIVPLFQ 165
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta;
zinc ribbon, crotonase superfamily, spiral domain; 1.98A
{Staphylococcus aureus}
Length = 285
Score = 94.2 bits (235), Expect = 1e-22
Identities = 48/153 (31%), Positives = 71/153 (46%), Gaps = 18/153 (11%)
Query: 48 KLTARERVELLCDPGTFVEYDMFMEHRCVD---FNMSEKKIPG--------DSVVTGRGS 96
LTA +R+E + D G+F E+D M + F +KI ++VVTG
Sbjct: 60 ALTAYKRIEAISDEGSFTEFDKGMTS--ANPLDFPSYLEKIEKDQQKTGLKEAVVTGTAQ 117
Query: 97 VNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESL 156
++G + D GS+ SV EKIC+I+D P + + SGGAR+QEG+ SL
Sbjct: 118 LDGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFILFSASGGARMQEGIISL 177
Query: 157 ---AAYSSVFQRNILASGVVPQISLILGPCAGG 186
S +R + + IS + P GG
Sbjct: 178 MQMGKTSVSLKR--HSDAGLLYISYLTHPTTGG 208
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc
ribbon, crotonase superfamily, spiral domain, ligase;
3.20A {Escherichia coli} SCOP: c.14.1.4
Length = 304
Score = 90.4 bits (225), Expect = 4e-21
Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 21/156 (13%)
Query: 48 KLTARERVELLCDPGTFVEYDMFMEHRCVD---FNMSEK---KIPG--------DSVVTG 93
++TAR R+ L D G+ VE E D F S+K ++ D++V
Sbjct: 54 RMTARNRLHSLLDEGSLVELGS--ELEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVM 111
Query: 94 RGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGV 153
+G++ G V + +F GGS+ SV + + ++QA+ P++ + SGGAR+QE +
Sbjct: 112 KGTLYGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFSASGGARMQEAL 171
Query: 154 ESL---AAYSSVFQRNILASGVVPQISLILGPCAGG 186
SL A S+ + + +P IS++ P GG
Sbjct: 172 MSLMQMAKTSAALAK--MQERGLPYISVLTDPTMGG 205
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 2e-08
Identities = 55/391 (14%), Positives = 103/391 (26%), Gaps = 126/391 (32%)
Query: 1 MNF-VGRMYYSYND------------------------------VDHLMRVRGQIDSMRA 29
M+F G Y Y D +DH++ + +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 30 I--ALQGGGTKSIQA------QHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMS 81
+ L + +Q + N L + + E P + M++E R +N +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR-QPS--MMTRMYIEQRDRLYNDN 123
Query: 82 ----------EKKI-----------PGDSV-VTG-RGSVNGRTV----------FIFSQD 108
+ P +V + G GS G+T D
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS--GKTWVALDVCLSYKVQCKMD 181
Query: 109 FTVFGGSLSSVHAEKICKIMDQAMLTGA-PIVGLNDSGGARIQEGVESLAAYSSVFQRNI 167
F +F +L + ++ + M Q +L P + I+ + S+ A R +
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL----RRL 237
Query: 168 LASGVVPQISLILGPCAGGAVYSPAITD-FTFMVEHSSYLFITGP----DVIKSVTNEDI 222
L S L+L V + + F L T D + + T I
Sbjct: 238 LKSKPYENCLLVL-----LNVQNAKAWNAFNL---SCKILLTTRFKQVTDFLSAATTTHI 289
Query: 223 SQEELGG-----------AK-THTSVSGVAHNA--------------FSNDIDAIQNVRH 256
S + K + + + N +H
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 257 LLGFLPMNNTQKPPIRRCYDSREFFEIQPKY 287
+ + I + E E + +
Sbjct: 350 V-----NCDKLTTIIESSLNVLEPAEYRKMF 375
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 1e-04
Identities = 29/154 (18%), Positives = 50/154 (32%), Gaps = 42/154 (27%)
Query: 129 DQAMLTGAPI--VGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGG 186
+++G P GLN + + A S + Q I S + S P
Sbjct: 375 KNLVVSGPPQSLYGLNLT--------LRKAKAPSGLDQSRIPFSERKLKFSNRFLP---- 422
Query: 187 AVYSPAITDFTFMVEHSSYLFITGPDVIKSVTNEDIS--QEELGGAKTHTS----VSGVA 240
V SP F HS L + K + ++S +++ T + ++
Sbjct: 423 -VASP------F---HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Query: 241 HNAFSNDIDAI--QNVR----------HLLGFLP 262
+ +D I V+ H+L F P
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKATHILDFGP 506
Score = 42.7 bits (100), Expect = 1e-04
Identities = 56/326 (17%), Positives = 88/326 (26%), Gaps = 120/326 (36%)
Query: 1 MNFVGRMYYSYNDV---------DHLMRVRGQIDSMRAIALQGGGTKSIQAQHNKGKLTA 51
M G Y + +H G S+ I + +I KGK
Sbjct: 1631 M---GMDLYKTSKAAQDVWNRADNHFKDTYGF--SILDIVINNPVNLTIHFGGEKGKRI- 1684
Query: 52 RERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGR-TVFIFSQD-- 108
RE Y + VD + +KI + +N T + F +
Sbjct: 1685 REN------------YSAMIFETIVDGKLKTEKIFKE--------INEHSTSYTFRSEKG 1724
Query: 109 ------FTVFGGSLSSVHAEKICKIMDQ-AMLT--GAPIVGLNDSGGARIQEGV------ 153
FT Q A+ A L G I
Sbjct: 1725 LLSATQFT-------------------QPALTLMEKAAFEDLKSKGL--IPADATFAGHS 1763
Query: 154 --E--SLAAYSS----------VFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFM 199
E +LA+ + VF R + VP+ L A+
Sbjct: 1764 LGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI----------- 1812
Query: 200 VEHSSYLFITGPDVIKSVTNEDISQE--ELGGAKTHTSVSGVAHNA------FSNDIDAI 251
P + + +++ Q E G +T V V +N + D+ A+
Sbjct: 1813 ----------NPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL 1862
Query: 252 QNVRHLLGFLPMNNTQKPPIRRCYDS 277
V ++L F+ QK I S
Sbjct: 1863 DTVTNVLNFI---KLQKIDIIELQKS 1885
Score = 39.3 bits (91), Expect = 0.002
Identities = 37/275 (13%), Positives = 70/275 (25%), Gaps = 119/275 (43%)
Query: 109 FTVFGG---------SLSSVHAEKICKIMDQAMLTGAPIVG-LNDSGGARIQEGVESLAA 158
+FGG L ++ T +VG L + E + +
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQ------------TYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 159 YSSVFQRNI-----------------LASGVV--PQISLI-----------LG--P---- 182
VF + + L S + P I +I LG P
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELR 264
Query: 183 --------CAGG----AVYSPAITDFTF------MVEHSSYLFITG-------PDVIKSV 217
+ G + + +F + LF G P+
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT---VLFFIGVRCYEAYPNTSLPP 321
Query: 218 TNEDISQEELGGAKTH-TSVSGVAHNAFSNDIDAIQNVRHLLGFLPMNNTQKPPIRRCYD 276
+ + S E G + S+S + + ++ N+ P ++
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT-------------NSHLPAGKQ--- 365
Query: 277 SREFFEIQPKYAKNIIVGFARINGHSVGIVANQPK 311
V + +NG +V+ P+
Sbjct: 366 ----------------VEISLVNGAKNLVVSGPPQ 384
Score = 36.6 bits (84), Expect = 0.013
Identities = 16/111 (14%), Positives = 28/111 (25%), Gaps = 33/111 (29%)
Query: 196 FTFMVEHSSYL--------FI-TGPDVIKSVT--NEDISQEEL--------------GGA 230
+V +S+ F P+ + +E + EL
Sbjct: 18 HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKV 77
Query: 231 KTHTSVSGVAHNAF------SNDIDAIQNVRHLLGFLPMNNTQKPPIRRCY 275
V + F NDI A+ LL + + + Y
Sbjct: 78 GQFDQVLNLCLTEFENCYLEGNDIHAL--AAKLLQENDTTLVKTKELIKNY 126
Score = 31.9 bits (72), Expect = 0.28
Identities = 26/121 (21%), Positives = 39/121 (32%), Gaps = 29/121 (23%)
Query: 56 ELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGS 115
LL + D+ + V FN + +IP G D V GS
Sbjct: 430 HLLVPASDLINKDLVKNN--VSFNAKDIQIPVYDTFDGS-------------DLRVLSGS 474
Query: 116 LSSVHAEKICKI---MDQAMLTGAP-IVGLNDSGGARIQEGVESLAAYSSVFQRNILASG 171
+S + I ++ + A I+ GGA G+ L RN +G
Sbjct: 475 ISERIVDCIIRLPVKWETTTQFKATHILDF-GPGGA---SGLGVL------THRNKDGTG 524
Query: 172 V 172
V
Sbjct: 525 V 525
Score = 28.5 bits (63), Expect = 3.7
Identities = 11/48 (22%), Positives = 14/48 (29%), Gaps = 21/48 (43%)
Query: 265 NTQKPPI--------RRCYDSREFFEIQPKYAKNIIVGFARINGHSVG 304
TQ P + D + I FA GHS+G
Sbjct: 1731 FTQ-PALTLMEKAAFE---DLKSKGLIPADAT------FA---GHSLG 1765
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon,
crotonase superfamily, spiral domain, ligase; 3.20A
{Escherichia coli} SCOP: c.14.1.4
Length = 339
Score = 35.0 bits (81), Expect = 0.023
Identities = 56/293 (19%), Positives = 103/293 (35%), Gaps = 94/293 (32%)
Query: 21 RGQIDSMRAIALQGGGT--------KSIQAQHNK------GKLTARERVELLCDPG--TF 64
+IDS+ A + Q ++ + + L A + +L P
Sbjct: 36 EAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKIFADLGAWQIAQLARHPQRPYT 95
Query: 65 VEYDMFMEHRCVDFNMSEKKIPGD-------SVVTGRGSVNGRTVFIFSQD--------- 108
++Y + +F+ ++ GD ++V G ++GR V I
Sbjct: 96 LDY---VRLAFDEFD----ELAGDRAYADDKAIVGGIARLDGRPVMIIGHQKGRETKEKI 148
Query: 109 FTVFGGSLSSVHAE---KICKIMDQAMLTGAPIVGLNDSGGA--------RIQEGVESLA 157
FG E K ++M A PI+ D+ GA R Q E++A
Sbjct: 149 RRNFG----MPAPEGYRKALRLMQMAERFKMPIITFIDTPGAYPGVGAEERGQS--EAIA 202
Query: 158 AYSSVFQRNI--LASGVVPQISLILGP-CAGGAVYSPAITDFTFMVEHSSY--------- 205
RN+ ++ VP + ++G +GGA+ + + D M+++S+Y
Sbjct: 203 -------RNLREMSRLGVPVVCTVIGEGGSGGAL-AIGVGDKVNMLQYSTYSVISPEGCA 254
Query: 206 ----------------LFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHN 242
+ I P + + + I E LGGA H + +A +
Sbjct: 255 SILWKSADKAPLAAEAMGIIRPRLKELKLIDSIIPEPLGGA--HRNPEAMAAS 305
Score = 26.9 bits (60), Expect = 8.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 291 IIVGFARINGHSVGIVANQ 309
I+ G AR++G V I+ +Q
Sbjct: 121 IVGGIARLDGRPVMIIGHQ 139
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha;
zinc ribbon, crotonase superfamily, spiral domain; 1.98A
{Staphylococcus aureus}
Length = 327
Score = 35.0 bits (81), Expect = 0.024
Identities = 63/290 (21%), Positives = 106/290 (36%), Gaps = 91/290 (31%)
Query: 21 RGQIDSMRAIALQGGG--TKSIQAQHNK---------GKLTARERVELLCDPG--TFVEY 67
R +I+S++ + + I L +RV++ T ++Y
Sbjct: 25 RNKIESLKESQDKNDVDLQEEIDMLEASLERETKKIYTNLKPWDRVQIARLQERPTTLDY 84
Query: 68 DMFMEHRCVDFNMSEKKIPGD-------SVVTGRGSVNGRTVFIFSQD---------FTV 111
+ + F ++ GD +++ G G +NGR V + Q +
Sbjct: 85 ---IPYIFDSFM----ELHGDRNFRDDPAMIGGIGFLNGRAVTVIGQQRGKDTKDNIYRN 137
Query: 112 FGGSLSSVHAE---KICKIMDQAMLTGAPIVGLNDSGGA--------RIQEGVESLAAYS 160
FG H E K ++M QA PI D+ GA R Q ES+A
Sbjct: 138 FG----MAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPGKAAEERGQS--ESIA--- 188
Query: 161 SVFQRNI--LASGVVPQISLILGP-CAGGAVYSPAITDFTFMVEHSSY------------ 205
N+ +AS VP I++++G +GGA+ I + M+E+S+Y
Sbjct: 189 ----TNLIEMASLKVPVIAIVIGEGGSGGAL-GIGIANKVLMLENSTYSVISPEGAAALL 243
Query: 206 -------------LFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHN 242
+ IT D+ + +D+ E LGGA H + A
Sbjct: 244 WKDSNLAKIAAETMKITAHDIKQLGIIDDVISEPLGGA--HKDIEQQALA 291
Score = 26.9 bits (60), Expect = 9.0
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 291 IIVGFARINGHSVGIVANQ 309
+I G +NG +V ++ Q
Sbjct: 107 MIGGIGFLNGRAVTVIGQQ 125
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 29.5 bits (67), Expect = 1.9
Identities = 4/21 (19%), Positives = 6/21 (28%)
Query: 86 PGDSVVTGRGSVNGRTVFIFS 106
D TG+ +F
Sbjct: 538 IADRTATGQARTRRGVAMVFP 558
>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A
{Escherichia coli} SCOP: c.56.5.3 c.50.1.1
Length = 503
Score = 28.5 bits (64), Expect = 3.2
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 86 PGDSVVTGRGSVNGRTVFIFSQDF---TVFGGSLSSVHAEKICKIMDQAMLTGAPIVGL 141
PGD V+T +++G+TV + + D V L+ V + ++D A LTGA ++ L
Sbjct: 334 PGD-VLT---TMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIAL 388
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold,
(A/B)5 doubly wound fold, parallel beta sheet; NMR
{Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Length = 111
Score = 27.0 bits (59), Expect = 3.4
Identities = 14/104 (13%), Positives = 30/104 (28%), Gaps = 20/104 (19%)
Query: 55 VELLCDPGTFVEYDMFMEH-RCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFG 113
+ L G +Y +F+E V + G
Sbjct: 5 IRLYITEGEVEDYRVFLERLEQSGLEWRPATPEDADAVIVLAGLWGT------------- 51
Query: 114 GSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLA 157
++I +D A + PI+ + G + +E+++
Sbjct: 52 ------RRDEILGAVDLARKSSKPIITVRPYGLENVPPELEAVS 89
>1zwm_A Gamma crystallin S; alignment, deuteration, liquid crystal, PF1,
relaxation, RDC, residual dipolar coupling, molecular
fragment replacement, MFR; NMR {Mus musculus} PDB:
1zwo_A 2a5m_A
Length = 177
Score = 27.4 bits (61), Expect = 3.9
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 2 NFVGRMYY----SYNDVDHLMRVRGQIDSMRAIALQGGGTKSI 40
NF G MY Y + M + ++ S RA+ L GG I
Sbjct: 53 NFSGHMYILPQGEYPEYQRWMGLNDRLGSCRAVHLSSGGQAKI 95
>3jru_B Probable cytosol aminopeptidase; bacterial blight, XOO0834, PEPA,
xanthomonas oryzae PV. ORYZ KACC10331, hydrolase,
manganese; 2.60A {Xanthomonas oryzae PV}
Length = 490
Score = 28.1 bits (63), Expect = 4.9
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 86 PGDSVVTGRGSVNGRTVFIFSQDF---TVFGGSLSSVHAEKICKIMDQAMLTGAPIVGL 141
P D V+T S++G+T+ + + D + +L+ ++D A LTGA +V L
Sbjct: 326 PSD-VIT---SMSGKTIEVGNTDAEGRLILCDALTYAERFNPEALVDVATLTGACMVAL 380
>3pei_A Cytosol aminopeptidase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-beta sandwich;
HET: MSE; 2.70A {Francisella tularensis subsp}
Length = 486
Score = 27.3 bits (61), Expect = 6.5
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 86 PGDSVVTGRGSVNGRTVFIFSQDF---TVFGGSLSSVHAEKICKIMDQAMLTGAPIVGL 141
PGD V+ S+ G TV + + D V +L+ + K ++D A LTGA I+ L
Sbjct: 315 PGD-VLK---SMKGITVEVSNTDAEGRLVLCDTLTYIGKYKPKAVIDLATLTGAMIISL 369
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 27.5 bits (61), Expect = 8.0
Identities = 8/36 (22%), Positives = 8/36 (22%), Gaps = 3/36 (8%)
Query: 71 MEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFS 106
M R E G V FI S
Sbjct: 465 MPFRGYAVLGGE---AGSQEVQQVPGSKRPVWFICS 497
>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase
(A aminoacylpeptide); 1.60A {Bos taurus} SCOP: c.56.5.3
c.50.1.1 PDB: 1lan_A 1lcp_A* 1lap_A 1bpn_A 1bpm_A
1bll_E* 2j9a_A* 2ewb_A*
Length = 484
Score = 27.3 bits (61), Expect = 8.6
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 86 PGDSVVTGRGSVNGRTVFIFSQDFT---VFGGSLSSVHAEKICKIMDQAMLTGAPIVGL 141
PGD VV + NG+T+ + + D + +L H I++ A LTGA + L
Sbjct: 314 PGD-VVR---ARNGKTIQVDNTDAEGRLILADALCYAHTFNPKVIINAATLTGAMDIAL 368
>3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A
{Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A*
3t8w_A*
Length = 528
Score = 27.0 bits (60), Expect = 8.9
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 86 PGDSVVTGRGSVNGRTVFIFSQDF---TVFGGSLSSVHAEKICKIMDQAMLTGAPIVGL 141
PGD ++T + NG+T+ + + D +L + I+D A LTGA + L
Sbjct: 358 PGD-IIT---ASNGKTIEVGNTDAEGRLTLADALVYAEKLGVDYIVDIATLTGAMLYSL 412
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.397
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,808,832
Number of extensions: 292315
Number of successful extensions: 589
Number of sequences better than 10.0: 1
Number of HSP's gapped: 556
Number of HSP's successfully gapped: 49
Length of query: 314
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 221
Effective length of database: 4,105,140
Effective search space: 907235940
Effective search space used: 907235940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)