RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11283
(314 letters)
>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B
subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
Length = 258
Score = 250 bits (640), Expect = 1e-83
Identities = 145/248 (58%), Positives = 186/248 (75%)
Query: 23 QIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSE 82
+ A G ++++ QH KGKLTARER++LL D G+FVE D F HR +F +
Sbjct: 11 DLRRRIEEATHAGSARAVEKQHAKGKLTARERIDLLLDEGSFVELDEFARHRSTNFGLDA 70
Query: 83 KKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLN 142
+ GD VVTG G+V+GR V +FSQDFTVFGG+L V+ +KI K+MD A+ TG P+VG+N
Sbjct: 71 NRPYGDGVVTGYGTVDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGIN 130
Query: 143 DSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEH 202
DSGGARIQEGV SL AY +F+RN ASGV+PQISL++GPCAGGAVYSPAITDFT MV+
Sbjct: 131 DSGGARIQEGVASLGAYGEIFRRNTHASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQ 190
Query: 203 SSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLP 262
+S++FITGPDVIK+VT ED+ EELGGA+TH S SGVAH+ ++ DA++ V+ LL +LP
Sbjct: 191 TSHMFITGPDVIKTVTGEDVGFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYLP 250
Query: 263 MNNTQKPP 270
NN +PP
Sbjct: 251 SNNLSEPP 258
>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B
subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 236 bits (604), Expect = 3e-78
Identities = 141/243 (58%), Positives = 179/243 (73%)
Query: 23 QIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSE 82
++ + QGGG + ++ QH GKLTA ER+ELL DPGTFVE D F+EHR F + +
Sbjct: 9 ELKKIEKEIEQGGGPEKVEKQHRAGKLTAWERLELLLDPGTFVEIDKFVEHRNTYFGLDK 68
Query: 83 KKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLN 142
K+P D V+TG G +NGR V +FSQDFTV GGSL +HA+KI K++D A+ G P++G+N
Sbjct: 69 VKLPRDGVITGVGEINGRKVAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMGIPVIGIN 128
Query: 143 DSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEH 202
DSGGARIQEGV++LA Y +F RN LASGVVPQI++I GPCAGGAVYSPA+TDF MV+
Sbjct: 129 DSGGARIQEGVDALAGYGEIFLRNTLASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQ 188
Query: 203 SSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLP 262
++ +FITGP+VIK+VT E+ISQE+LGGA H SG AH ND A+ VR LL +LP
Sbjct: 189 TARMFITGPNVIKAVTGEEISQEDLGGAMVHNQKSGNAHFLADNDEKAMSLVRTLLSYLP 248
Query: 263 MNN 265
NN
Sbjct: 249 SNN 251
>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B
subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 258
Score = 227 bits (580), Expect = 2e-74
Identities = 136/244 (55%), Positives = 174/244 (71%)
Query: 23 QIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSE 82
++ R +L G +++ H KGKLTARER+ L D +FVE D +HR +FN+ E
Sbjct: 12 ELHKRREESLHPVGEDAVEKVHAKGKLTARERIYALLDEDSFVELDALAKHRSTNFNLGE 71
Query: 83 KKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLN 142
K+ GD VVTG G+++GR V IFSQD TVFGGSL V+ EKI K+ + A+ TG P++G+N
Sbjct: 72 KRPLGDGVVTGYGTIDGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTGRPLIGIN 131
Query: 143 DSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEH 202
D GARIQEGV SL YS +F+ NILASGV+PQISLI+G AGG VYSPA+TDF MV+
Sbjct: 132 DGAGARIQEGVVSLGLYSRIFRNNILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQ 191
Query: 203 SSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLP 262
+S +FITGPDVIK+VT E+++ EELGGA TH + SG AH A S + DA VR LL +LP
Sbjct: 192 TSQMFITGPDVIKTVTGEEVTMEELGGAHTHMAKSGTAHYAASGEQDAFDYVRELLSYLP 251
Query: 263 MNNT 266
NN+
Sbjct: 252 PNNS 255
>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase
(transcarboxylase 12S) {Propionibacterium freudenreichii
[TaxId: 1744]}
Length = 253
Score = 205 bits (521), Expect = 9e-66
Identities = 116/243 (47%), Positives = 156/243 (64%), Gaps = 1/243 (0%)
Query: 23 QIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSE 82
Q+ R + GGG + ++ QH++GK TARER+ L DP +F E F +HR F M +
Sbjct: 12 QLAEQRQVIEAGGGERRVEKQHSQGKQTARERLNNLLDPHSFDEVGAFRKHRTTLFGMDK 71
Query: 83 KKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLN 142
+P D VVTGRG++ GR V SQDFTV GGS + K+ + M+QA+LTG P +
Sbjct: 72 AVVPADGVVTGRGTILGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFY 131
Query: 143 DSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEH 202
DSGGARIQEG++SL+ Y +F N+ SGVVPQI++I GPCAGGA YSP ++
Sbjct: 132 DSGGARIQEGIDSLSGYGKMFFANVKLSGVVPQIAIIAGPCAGGASYSP-ALTDFIIMTK 190
Query: 203 SSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLP 262
+++FITGP VIKSVT ED++ +ELGGA+ H ++SG H +D A + LL FLP
Sbjct: 191 KAHMFITGPQVIKSVTGEDVTADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFLP 250
Query: 263 MNN 265
NN
Sbjct: 251 QNN 253
>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit beta, AccD {Escherichia coli [TaxId:
562]}
Length = 263
Score = 161 bits (408), Expect = 1e-48
Identities = 54/232 (23%), Positives = 97/232 (41%), Gaps = 15/232 (6%)
Query: 48 KLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKK------------IPGDSVVTGRG 95
++TAR R+ L D G+ VE +E + V KK D++V +G
Sbjct: 32 RMTARNRLHSLLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVMKG 91
Query: 96 SVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVES 155
++ G V + +F GGS+ SV + + ++QA+ P++ + SGGAR+QE + S
Sbjct: 92 TLYGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFSASGGARMQEALMS 151
Query: 156 LAAYSS-VFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVI 214
L + + +P IS++ P GG S A+ + E + + GP VI
Sbjct: 152 LMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGPRVI 211
Query: 215 KSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDI-DAIQNVRHLLGFLPMNN 265
+ E + ++ + ++ + ++ L LP N
Sbjct: 212 EQTVREKLP-PGFQRSEFLIEKGAIDMIVRRPEMRLKLASILAKLMNLPAPN 262
>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit
{Acidaminococcus fermentans [TaxId: 905]}
Length = 287
Score = 157 bits (397), Expect = 8e-47
Identities = 50/269 (18%), Positives = 102/269 (37%), Gaps = 31/269 (11%)
Query: 15 DHLMRVRGQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHR 74
+ L ++ +I + A + G K+ + +G+LTA +R+E L +PG++ +
Sbjct: 28 EQLKKIEEEIHQLIKEAQEAG--KADADVNKRGELTALQRIEKLVEPGSWRPLNTL---- 81
Query: 75 CVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLT 134
FN K ++V G G VNG+ + + D G+ AE + + D A
Sbjct: 82 ---FNPQGNKNGSVAIVKGLGRVNGKWCVVVASDNKKLAGAWVPGQAECLLRASDTAKTL 138
Query: 135 GAPIVGLNDSGGARIQEGVESLA---AYSSVFQRNILASGV-VPQISLILGPCAGGAVYS 190
P+V + + G + E + + F RN + + +P I I G G Y
Sbjct: 139 HVPLVYVLNCSGVKFDEQEKVYPNRRGGGTPFFRNAELNQLGIPVIVGIYGTNPAGGGYH 198
Query: 191 PAITDFTFMVEHSSYLFITGPDVIKSVT-----------------NEDISQEELGGAKTH 233
+ + + + G ++ + + E G H
Sbjct: 199 SISPTV-IIAHEKANMAVGGAGIMGGMNPKGHVDLEYANEIADMVDRTGKTEPPGAVDIH 257
Query: 234 TSVSGVAHNAFSNDIDAIQNVRHLLGFLP 262
+ +G ++++ ++ ++ +G LP
Sbjct: 258 YTETGFMREVYASEEGVLEGIKKYVGMLP 286
>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 333
Score = 149 bits (377), Expect = 3e-43
Identities = 45/320 (14%), Positives = 83/320 (25%), Gaps = 82/320 (25%)
Query: 24 IDSMRAIALQGGGT----------KSIQAQHNKGKLTARERVELL-CDPGTFVEYDMFME 72
+ R A G T ++ +Q + + + E E
Sbjct: 12 LQPKRYKAHLMGTTYVYDFPELFRQASSSQWKNFSADVKLTDDFFISNELIEDENGELTE 71
Query: 73 HRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAM 132
+ + V GR + + D T GS E K+ + A
Sbjct: 72 VEREPGANAIGMVAFKITVKTPEYPRGRQFVVVANDITFKIGSFGPQEDEFFNKVTEYAR 131
Query: 133 LTGAPIVGLNDSGGARIQEGVE---------------------------------SLAAY 159
G P + L + GARI E
Sbjct: 132 KRGIPRIYLAANSGARIGMAEEIVPLFQVAWNDAANPDKGFQYLYLTSEGMETLKKFDKE 191
Query: 160 SSVFQRNILASG-VVPQISLILGPCAGGAVYS--PAITDFTFMVEHSSYLF----ITGP- 211
+SV + +G I I+G G V + +F +T
Sbjct: 192 NSVLTERTVINGEERFVIKTIIGSEDGLGVECLRGSGLIAGATSRAYHDIFTITLVTCRS 251
Query: 212 ---------------------------DVIKSVTNEDI--SQEELGGAKTHTSVSGVAHN 242
I + ++ S +LGG + + +GV+H
Sbjct: 252 VGIGAYLVRLGQRAIQVEGQPIILTGAPAINKMLGREVYTSNLQLGGTQIMYN-NGVSHL 310
Query: 243 AFSNDIDAIQNVRHLLGFLP 262
+D+ ++ + + ++P
Sbjct: 311 TAVDDLAGVEKIVEWMSYVP 330
>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 404
Score = 68.8 bits (168), Expect = 9e-14
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 254 VRHLLGFLPMNNTQKPPIRRCYDSREFFEIQPKYAKNIIVGFARINGHSVGIVANQPKVA 313
VR ++ T+ +D FFE +AK ++VG AR+ G +G++ + +
Sbjct: 29 VRWMIEGRE---TESGFEYGLFDKGSFFETLSGWAKGVVVGRARLGGIPLGVIGVETRTV 85
Query: 314 A 314
Sbjct: 86 E 86
Score = 33.4 bits (76), Expect = 0.030
Identities = 13/91 (14%), Positives = 23/91 (25%), Gaps = 15/91 (16%)
Query: 46 KGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIF 105
+G+ T L D G+F E + VV GR + G + +
Sbjct: 34 EGRETESGFEYGLFDKGSFFE---TLSGW------------AKGVVVGRARLGGIPLGVI 78
Query: 106 SQDFTVFGGSLSSVHAEKICKIMDQAMLTGA 136
+ + + A
Sbjct: 79 GVETRTVENLIPADPANPNSAETLIQEPGQV 109
>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit
{Acidaminococcus fermentans [TaxId: 905]}
Length = 299
Score = 61.3 bits (148), Expect = 2e-11
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 257 LLGFLPMNNTQ----KPPIRRCYDSREFFEIQPKYAKNIIVGFARINGHSVGIVANQPKV 312
L +P+N+ + I R +D+ E E + Y ++ G A++NG VG+VAN +
Sbjct: 21 LYSMVPLNDKRAYDIYNVIARLFDNSELHEYKKGYGPEMVTGLAKVNGLLVGVVANVQGL 80
Score = 51.3 bits (122), Expect = 5e-08
Identities = 33/204 (16%), Positives = 59/204 (28%), Gaps = 36/204 (17%)
Query: 52 RERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTV 111
+ L D EY KK G +VTG VNG V + + +
Sbjct: 36 YNVIARLFDNSELHEY---------------KKGYGPEMVTGLAKVNGLLVGVVANVQGL 80
Query: 112 --------------FGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLA 157
GG L K+ + + PIV + D+ G + E
Sbjct: 81 LMNYPEYKAAGSVGIGGKLYRQGLVKMNEFVTLCARDRLPIVWIQDTTGIDVGNDAEKAE 140
Query: 158 AYSSVFQ-RNILASGVVPQISLILGPC---AGGAVYSPAITD---FTFMVEHSSYLFITG 210
+ + +PQ + L A + P D F+ + + G
Sbjct: 141 LLGLGQSLIYSIQTSHIPQFEITLRKGTAAAHYVLGGPQGNDTNAFSIGTAATEIAVMNG 200
Query: 211 PDVIKSVTNEDISQEELGGAKTHT 234
++ + ++++ G
Sbjct: 201 ETAATAMYSRRLAKDRKAGKDLQP 224
>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B
subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
Length = 263
Score = 59.4 bits (143), Expect = 7e-11
Identities = 31/180 (17%), Positives = 51/180 (28%), Gaps = 20/180 (11%)
Query: 52 RERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTV 111
+E + D F E + + +++TG G V GR V I +
Sbjct: 32 HSVIEHVLDDAEFFET---------------QPLFAPNILTGFGRVEGRPVGIVANQPMQ 76
Query: 112 FGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLA-AYSSVFQRNILAS 170
F G L +EK + + P++ D G E A
Sbjct: 77 FAGCLDITASEKAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAE 136
Query: 171 GVVPQISLILGPCAGGAVYSPAI----TDFTFMVEHSSYLFITGPDVIKSVTNEDISQEE 226
VP I++I GGA D + + + + I+
Sbjct: 137 ATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRRTIADAG 196
Score = 45.1 bits (106), Expect = 4e-06
Identities = 27/62 (43%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 257 LLGFLPMNNTQ----KPPIRRCYDSREFFEIQPKYAKNIIVGFARINGHSVGIVANQPKV 312
L +P + Q I D EFFE QP +A NI+ GF R+ G VGIVANQP
Sbjct: 17 LDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPNILTGFGRVEGRPVGIVANQPMQ 76
Query: 313 AA 314
A
Sbjct: 77 FA 78
>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B
subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 271
Score = 57.1 bits (137), Expect = 5e-10
Identities = 31/146 (21%), Positives = 51/146 (34%), Gaps = 7/146 (4%)
Query: 87 GDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGG 146
++V G G ++GR V I + T F G L +EK + + PIV L D G
Sbjct: 57 AQNIVVGFGRIDGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDCFNIPIVMLVDVPG 116
Query: 147 ARIQEGVESLAAYSSVFQRNILASGV--VPQISLILGPCAGGAVYSPA----ITDFTFMV 200
E + + A G VP+I++I GGA D
Sbjct: 117 FLPGTDQEYNGI-IRRGAKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAW 175
Query: 201 EHSSYLFITGPDVIKSVTNEDISQEE 226
+ + + V + +++
Sbjct: 176 PTAQIAVMGASGAVGFVYRQQLAEAA 201
Score = 43.2 bits (101), Expect = 2e-05
Identities = 30/62 (48%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 257 LLGFLPMNNTQ----KPPIRRCYDSREFFEIQPKYAKNIIVGFARINGHSVGIVANQPKV 312
L +P + Q I R D EF EIQ YA+NI+VGF RI+G VGIVANQP
Sbjct: 23 LDTLIPDSPNQPYDMHEVITRLLDD-EFLEIQAGYAQNIVVGFGRIDGRPVGIVANQPTH 81
Query: 313 AA 314
A
Sbjct: 82 FA 83
>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase
(transcarboxylase 12S) {Propionibacterium freudenreichii
[TaxId: 1744]}
Length = 264
Score = 47.4 bits (112), Expect = 6e-07
Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 20/165 (12%)
Query: 52 RERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTV 111
R+ + + D G ++E K ++VT VNGR+V I + +V
Sbjct: 34 RDVIAKIVDWGDYLEV---------------KAGYATNLVTAFARVNGRSVGIVANQPSV 78
Query: 112 FGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLA-AYSSVFQRNILAS 170
G L ++K + ++ P+V L D G E +
Sbjct: 79 MSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSE 138
Query: 171 GVVPQISLILGPCAGGAVYSPAITDF----TFMVEHSSYLFITGP 211
VP+I+++L GG+ + D + + +
Sbjct: 139 ATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAE 183
Score = 46.7 bits (110), Expect = 1e-06
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 257 LLGFLPMNNTQ----KPPIRRCYDSREFFEIQPKYAKNIIVGFARINGHSVGIVANQPKV 312
L +P++ + + I + D ++ E++ YA N++ FAR+NG SVGIVANQP V
Sbjct: 19 LRDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVANQPSV 78
>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B
subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Length = 264
Score = 47.0 bits (111), Expect = 9e-07
Identities = 30/166 (18%), Positives = 57/166 (34%), Gaps = 24/166 (14%)
Query: 52 RERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTV 111
R+ ++ + D G F E + ++V G + G+TV I + +V
Sbjct: 34 RDVIKRVVDHGEFFEV---------------QPYFAKNIVIGFARIQGKTVGIVANQPSV 78
Query: 112 FGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVES---LAAYSSVFQRNIL 168
G L ++K + + PI+ D+ G E + + +
Sbjct: 79 LAGVLDIDSSDKAARFIRFLDAFNIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSE 138
Query: 169 ASGVVPQISLILGPCAGGAVYSPAIT----DFTFMVEHSSYLFITG 210
A+ VP+I++IL GGA + D + +
Sbjct: 139 AT--VPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAVMGP 182
Score = 40.5 bits (94), Expect = 1e-04
Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 4/66 (6%)
Query: 249 DAIQNVRHLLGFLPMNNTQ----KPPIRRCYDSREFFEIQPKYAKNIIVGFARINGHSVG 304
+++ +L LP N + + I+R D EFFE+QP +AKNI++GFARI G +VG
Sbjct: 11 TSLETPEDILDILPDNPNKGYDVRDVIKRVVDHGEFFEVQPYFAKNIVIGFARIQGKTVG 70
Query: 305 IVANQP 310
IVANQP
Sbjct: 71 IVANQP 76
>d2bvla1 c.68.1.22 (A:1-542) Toxin B {Clostridium difficile [TaxId:
1496]}
Length = 542
Score = 28.4 bits (63), Expect = 1.2
Identities = 5/46 (10%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 184 AGGAVYSPAITDF---TFMVEHSSYLFITGPDVIKSVTNEDISQEE 226
A + + + F + + + ++GP+ + + + +E
Sbjct: 441 ADNGRFMMELGKYLRVGFFPDVKTTINLSGPEAYAAAYQDLLMFKE 486
>d2vk9a1 c.68.1.22 (A:2-541) Alpha-toxin {Clostridium novyi [TaxId:
1542]}
Length = 540
Score = 26.4 bits (58), Expect = 5.7
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 186 GAVYSPAITDF---TFMVEHSSYLFITGPDVIKSVTNE 220
G+ + I + F E +S +F +GP++ S T +
Sbjct: 448 GSSFYQQIIGYLSSGFKPEVNSTVFFSGPNIYSSATCD 485
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.397
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,137,715
Number of extensions: 51665
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 24
Length of query: 314
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,240,546
Effective search space: 284085034
Effective search space used: 284085034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)