Query psy11285
Match_columns 189
No_of_seqs 191 out of 1703
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 22:55:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11285.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11285hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0994|consensus 99.9 1.8E-27 3.8E-32 219.0 9.9 143 33-189 763-908 (1758)
2 KOG0994|consensus 99.9 6.6E-24 1.4E-28 195.6 11.1 175 1-188 309-511 (1758)
3 KOG3512|consensus 99.8 4.4E-20 9.5E-25 158.5 11.2 125 1-131 304-437 (592)
4 KOG1836|consensus 99.8 6.2E-19 1.4E-23 172.1 11.6 170 1-188 704-889 (1705)
5 KOG1836|consensus 99.8 4E-18 8.8E-23 166.5 11.8 161 1-181 864-1033(1705)
6 KOG3512|consensus 99.4 7.7E-13 1.7E-17 114.3 7.5 134 34-177 277-436 (592)
7 KOG4289|consensus 99.3 3.7E-12 8E-17 120.9 7.8 108 7-138 1742-1853(2531)
8 smart00180 EGF_Lam Laminin-typ 99.0 5.8E-10 1.3E-14 68.2 4.3 40 91-130 1-40 (46)
9 cd00055 EGF_Lam Laminin-type e 98.9 1.3E-09 2.8E-14 67.8 4.6 44 90-133 1-44 (50)
10 cd00055 EGF_Lam Laminin-type e 98.9 2.3E-09 5E-14 66.7 4.4 44 34-77 1-44 (50)
11 smart00180 EGF_Lam Laminin-typ 98.8 4.8E-09 1E-13 64.1 4.1 40 35-74 1-40 (46)
12 KOG4289|consensus 98.8 1.1E-08 2.4E-13 97.9 8.2 94 51-175 1738-1843(2531)
13 PF00053 Laminin_EGF: Laminin 98.8 2.1E-09 4.6E-14 66.5 1.7 43 35-77 1-43 (49)
14 PF00053 Laminin_EGF: Laminin 98.7 2.8E-09 6.1E-14 65.9 0.9 43 91-133 1-43 (49)
15 KOG1225|consensus 97.9 3.4E-05 7.4E-10 69.2 7.6 85 23-123 239-342 (525)
16 KOG1388|consensus 97.6 4.7E-05 1E-09 60.5 3.3 85 26-126 44-130 (217)
17 KOG3509|consensus 97.4 0.0014 3.1E-08 62.5 10.9 121 2-134 728-853 (964)
18 KOG3509|consensus 97.0 0.0024 5.1E-08 61.1 7.4 136 47-188 713-860 (964)
19 KOG1225|consensus 97.0 0.0016 3.4E-08 58.7 6.0 52 51-120 295-365 (525)
20 smart00051 DSL delta serrate l 96.9 0.0015 3.2E-08 42.5 3.9 35 30-65 29-63 (63)
21 smart00051 DSL delta serrate l 96.8 0.0019 4.2E-08 41.9 3.5 20 101-121 44-63 (63)
22 KOG4260|consensus 96.3 0.0062 1.4E-07 50.3 4.5 27 51-77 167-193 (350)
23 KOG1226|consensus 95.8 0.05 1.1E-06 50.8 8.6 19 102-122 562-580 (783)
24 KOG4260|consensus 95.8 0.0092 2E-07 49.4 3.3 59 56-130 132-190 (350)
25 KOG1388|consensus 95.6 0.0056 1.2E-07 48.8 1.3 56 1-70 74-130 (217)
26 PF07974 EGF_2: EGF-like domai 95.1 0.015 3.3E-07 32.5 1.8 25 93-121 8-32 (32)
27 PF07974 EGF_2: EGF-like domai 94.7 0.033 7.1E-07 31.1 2.3 25 37-65 8-32 (32)
28 PF12661 hEGF: Human growth fa 94.5 0.021 4.6E-07 25.4 1.0 13 53-65 1-13 (13)
29 KOG1218|consensus 93.4 2.8 6E-05 34.8 12.7 78 27-123 100-177 (316)
30 PF01414 DSL: Delta serrate li 89.3 0.066 1.4E-06 34.7 -1.1 20 45-65 44-63 (63)
31 KOG1226|consensus 88.6 0.85 1.8E-05 42.9 5.2 55 52-126 566-624 (783)
32 KOG1219|consensus 88.4 0.68 1.5E-05 48.7 4.7 65 52-123 3886-3978(4289)
33 PF01414 DSL: Delta serrate li 87.9 0.1 2.2E-06 33.8 -0.9 19 102-121 45-63 (63)
34 KOG1218|consensus 82.1 7.9 0.00017 32.1 7.7 22 46-67 156-177 (316)
35 KOG0196|consensus 78.0 3.9 8.4E-05 39.2 4.8 39 51-95 258-300 (996)
36 KOG0196|consensus 76.1 4.2 9E-05 39.0 4.4 31 107-137 258-294 (996)
37 PF03302 VSP: Giardia variant- 75.9 36 0.00077 30.0 10.1 14 119-132 205-218 (397)
38 PF03302 VSP: Giardia variant- 64.3 65 0.0014 28.3 9.2 12 165-176 300-311 (397)
39 cd00054 EGF_CA Calcium-binding 60.1 13 0.00029 19.9 2.8 14 109-122 25-38 (38)
40 KOG1214|consensus 59.4 17 0.00036 35.2 4.7 62 51-119 796-859 (1289)
41 PTZ00382 Variant-specific surf 57.2 26 0.00056 24.5 4.4 43 119-176 4-47 (96)
42 cd00185 TNFR Tumor necrosis fa 54.8 35 0.00076 23.5 4.8 14 63-76 33-46 (98)
43 PHA02714 CD-30-like protein; P 51.1 18 0.00039 25.5 2.7 43 67-116 23-67 (110)
44 PTZ00214 high cysteine membran 49.2 62 0.0013 31.3 6.9 14 123-137 619-632 (800)
45 PF00008 EGF: EGF-like domain 46.1 10 0.00022 20.6 0.8 14 51-64 19-32 (32)
46 smart00179 EGF_CA Calcium-bind 43.2 18 0.00039 19.7 1.5 15 52-66 24-39 (39)
47 PTZ00214 high cysteine membran 41.8 2.2E+02 0.0049 27.6 9.4 10 4-13 449-458 (800)
48 smart00181 EGF Epidermal growt 40.8 24 0.00051 18.9 1.8 15 51-65 19-34 (35)
49 PF07699 GCC2_GCC3: GCC2 and G 39.9 27 0.00059 20.7 2.0 14 63-76 9-22 (48)
50 KOG1025|consensus 38.9 60 0.0013 31.9 5.0 16 164-179 563-579 (1177)
51 cd00053 EGF Epidermal growth f 38.7 24 0.00051 18.4 1.5 13 51-63 20-32 (36)
52 KOG1214|consensus 38.5 31 0.00067 33.5 3.0 10 6-15 811-820 (1289)
53 PHA02887 EGF-like protein; Pro 33.5 34 0.00074 25.0 2.0 17 51-67 107-123 (126)
54 KOG1219|consensus 33.5 50 0.0011 36.1 3.7 63 51-123 3875-3939(4289)
55 PHA02637 TNF-alpha-receptor-li 32.1 61 0.0013 23.9 3.2 14 118-131 41-54 (127)
56 KOG4611|consensus 26.1 85 0.0018 27.6 3.5 19 119-137 98-116 (747)
57 PHA03099 epidermal growth fact 25.1 53 0.0012 24.4 1.8 18 50-67 65-82 (139)
58 PF09064 Tme5_EGF_like: Thromb 23.8 75 0.0016 17.9 1.8 16 102-117 11-27 (34)
No 1
>KOG0994|consensus
Probab=99.94 E-value=1.8e-27 Score=218.98 Aligned_cols=143 Identities=34% Similarity=0.814 Sum_probs=134.3
Q ss_pred CcCCCCCCCCCCCCCCCCCCeeecCCCccCCCCCcCCCCcccCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCcccc
Q psy11285 33 STCGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDRCEPGYWGLSKISSYAPDIDGCLKCGCSQFGSVREDCEQMTGRCVC 112 (189)
Q Consensus 33 ~~C~C~~~g~~~~~C~~~tG~C~C~~~~~G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~C~~~gs~~~~C~~~tG~C~C 112 (189)
+.|+|++.|+++..|++..|+|.|+||+.|++|++|+||+||+ .+.+|++|+|+..||+...|+.+||||.|
T Consensus 763 ~~CnCnptGSlS~vCn~~GGqCqCkPnVVGR~CdqCApGtyGF--------GPsGCk~CdC~~~Gs~~~~Cd~~tGQC~C 834 (1758)
T KOG0994|consen 763 SMCNCNPTGSLSSVCNPNGGQCQCKPNVVGRRCDQCAPGTYGF--------GPSGCKACDCNSIGSLDKYCDKITGQCQC 834 (1758)
T ss_pred cccccCCCccccccccCCCceecccCccccccccccCCcccCc--------CCccCccccccccccccccccccccceee
Confidence 4799999999999999999999999999999999999999999 46789999999999999999999999999
Q ss_pred CCCcccCCCCcCCCCCCCCCCCCCCCCCCccCCCCCCCCccCCCccccCCC---CCCCCCCCCCCCcccCcCCCcCccCC
Q psy11285 113 KPGVKGSKCNECLDPNKKLGPNGCMPGMEVKPCNGEPPVINLQTGVELDCG---SGANREDCPSDAYCHITQNFARCCRK 189 (189)
Q Consensus 113 ~~g~~G~~C~~C~~g~~~~~~~~C~~~~~~~~C~~~~~~c~~~tg~c~~C~---~G~~C~~C~~g~~g~~~~~~~~~~~~ 189 (189)
.+|+.|++|++|.||||+|+ .|+ .|+|+.|...|++.+|.|+.|. +|.+|++|.+||||.+-......||+
T Consensus 835 ~~g~ygrqCnqCqpG~WgFP--eCr----~CqCNgHA~~Cd~~tGaCi~CqD~T~G~~CdrCl~GyyGdP~lg~g~~CrP 908 (1758)
T KOG0994|consen 835 RPGTYGRQCNQCQPGYWGFP--ECR----PCQCNGHADTCDPITGACIDCQDSTTGHSCDRCLDGYYGDPRLGSGIGCRP 908 (1758)
T ss_pred ccccchhhccccCCCccCCC--cCc----cccccCcccccCccccccccccccccccchhhhhccccCCcccCCCCCCCC
Confidence 99999999999999999985 587 5789999999999999999885 79999999999999998888888875
No 2
>KOG0994|consensus
Probab=99.90 E-value=6.6e-24 Score=195.64 Aligned_cols=175 Identities=28% Similarity=0.585 Sum_probs=141.2
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcCCCCCCCCC--------CCCCCCCCCee-ecCCCccCCCCCcCCCC
Q psy11285 1 SGIYLKSCLDSWYGCCPDNKTLAQGPDNAGCPSTCGCNKLGST--------EDACIEDTEQC-KCKQGVGGLKCDRCEPG 71 (189)
Q Consensus 1 ~G~~C~~C~~G~~g~~~~~~~~~~g~~~~~C~~~C~C~~~g~~--------~~~C~~~tG~C-~C~~~~~G~~C~~C~~G 71 (189)
.|.|||+|.+.|..- +|..+.|...+.|+ .|+||.|+.. ..+=+...|+| .|++|+.|.+||+|+|.
T Consensus 309 ~G~nCE~C~~fYnDl---PWrpAeG~~~neCr-kC~CNgHa~sCHFD~aV~~ASG~vSGGVCDdCqHNT~G~~CE~CkP~ 384 (1758)
T KOG0994|consen 309 AGLNCEHCAPFYNDL---PWRPAEGKTSNECR-KCECNGHADTCHFDMAVYEASGNVSGGVCDDCQHNTEGQNCERCKPF 384 (1758)
T ss_pred CCCChHHhhHhhcCC---CCCccCCCCccccc-ccCCCCCcccccccHHHHhhcCCcccccCccccccccccchhhcCcc
Confidence 489999999988765 67888888889998 9999999731 01113446899 89999999999999999
Q ss_pred cccCCCCCCCCCCCCCCccCCCCCCCCCCC-----CCCCCC----CccccCCCcccCCCCcCCCCCCCCC---CCCCCCC
Q psy11285 72 YWGLSKISSYAPDIDGCLKCGCSQFGSVRE-----DCEQMT----GRCVCKPGVKGSKCNECLDPNKKLG---PNGCMPG 139 (189)
Q Consensus 72 ~~g~~~~~~~~~~~~~C~~C~C~~~gs~~~-----~C~~~t----G~C~C~~g~~G~~C~~C~~g~~~~~---~~~C~~~ 139 (189)
||.++... |+.+..|++|.|++.||... .+|+.+ |+|.||+++.|++|++|.+|||++. +.||.
T Consensus 385 fYRdprr~--i~~p~vC~pC~CdP~GS~~~g~cds~~Dp~~GlvaGqC~CK~~V~G~RCd~Ck~Gywgl~~~dp~GC~-- 460 (1758)
T KOG0994|consen 385 FYRDPRRD--ISDPDVCKPCECDPAGSQDGGICDSFCDPSTGLVAGQCRCKEHVAGRRCDRCKDGYWGLTSADPYGCR-- 460 (1758)
T ss_pred cccCCCCC--CCCccccccccCCCCcCcCCCccccccCccccccccccccccCcCccccchhccCcccCccCCCCCcc--
Confidence 99998764 55788999999999998753 467766 9999999999999999999999986 46898
Q ss_pred CCccCCCCC----CCCccCCCccccCC---CCCCCCCCCCCCCcccCcCCCcCccC
Q psy11285 140 MEVKPCNGE----PPVINLQTGVELDC---GSGANREDCPSDAYCHITQNFARCCR 188 (189)
Q Consensus 140 ~~~~~C~~~----~~~c~~~tg~c~~C---~~G~~C~~C~~g~~g~~~~~~~~~~~ 188 (189)
.|.|+.. ...|++.||.|. | ++|..|+.|.+.+||.. +..++|+
T Consensus 461 --~C~CN~lGT~~~s~CD~~TG~C~-ckrlvTg~~cdqclPeh~gLs--~~~~gc~ 511 (1758)
T KOG0994|consen 461 --PCDCNPLGTRNGSGCDPETGDCY-CKRLVTGIDCDQCLPEHWGLS--NDLEGCR 511 (1758)
T ss_pred --ccccccccccCCCCCCCCCCceE-eeccccCCCccccCccccccC--CCCCCCc
Confidence 3455432 345999999996 6 69999999999999653 3344554
No 3
>KOG3512|consensus
Probab=99.83 E-value=4.4e-20 Score=158.53 Aligned_cols=125 Identities=26% Similarity=0.601 Sum_probs=106.0
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcCCCCCCCCC---CCCC-----CCCCCee-ecCCCccCCCCCcCCCC
Q psy11285 1 SGIYLKSCLDSWYGCCPDNKTLAQGPDNAGCPSTCGCNKLGST---EDAC-----IEDTEQC-KCKQGVGGLKCDRCEPG 71 (189)
Q Consensus 1 ~G~~C~~C~~G~~g~~~~~~~~~~g~~~~~C~~~C~C~~~g~~---~~~C-----~~~tG~C-~C~~~~~G~~C~~C~~G 71 (189)
.|+-|++|++.||+. +|..+.....+.|. +|+|+.|++. +..+ ....|+| .|++|+.|++|+.|++|
T Consensus 304 aGPdCgrCKpfy~dR---PW~raT~~~a~~c~-ac~Cn~harrcrfn~Ely~lSgr~SggvClnCrHnTaGrhChyCreG 379 (592)
T KOG3512|consen 304 AGPDCGRCKPFYYDR---PWGRATALPANECV-ACNCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREG 379 (592)
T ss_pred CCCCcccccccccCC---CccccccCCCcccc-ccccchhhhhcccchhhhcccCccccceEeecccCCCCcccccccCc
Confidence 489999999999986 45555556668897 9999999862 1111 1235789 89999999999999999
Q ss_pred cccCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCccccCCCcccCCCCcCCCCCCCC
Q psy11285 72 YWGLSKISSYAPDIDGCLKCGCSQFGSVREDCEQMTGRCVCKPGVKGSKCNECLDPNKKL 131 (189)
Q Consensus 72 ~~g~~~~~~~~~~~~~C~~C~C~~~gs~~~~C~~~tG~C~C~~g~~G~~C~~C~~g~~~~ 131 (189)
||.+...+ +.+...|+.|+|+++|++..+|+..||||.||+|++|..|++|++||+..
T Consensus 380 yyRd~s~p--l~hrkaCk~CdChpVGs~gktCNq~tGqCpCkeGvtG~tCnrCa~gyqqs 437 (592)
T KOG3512|consen 380 YYRDGSKP--LTHRKACKACDCHPVGSAGKTCNQTTGQCPCKEGVTGLTCNRCAPGYQQS 437 (592)
T ss_pred cccCCCCC--CchhhhhhhcCCcccccccccccccCCcccCCCCCcccccccccchhhcc
Confidence 99998764 45788899999999999999999999999999999999999999999864
No 4
>KOG1836|consensus
Probab=99.78 E-value=6.2e-19 Score=172.15 Aligned_cols=170 Identities=29% Similarity=0.578 Sum_probs=135.7
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCeeecCCCccCCCCCcCCCCcccCCCCCC
Q psy11285 1 SGIYLKSCLDSWYGCCPDNKTLAQGPDNAGCPSTCGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDRCEPGYWGLSKISS 80 (189)
Q Consensus 1 ~G~~C~~C~~G~~g~~~~~~~~~~g~~~~~C~~~C~C~~~g~~~~~C~~~tG~C~C~~~~~G~~C~~C~~G~~g~~~~~~ 80 (189)
.|+.||.|++||++..-. .+.+ ..|. +|+|++| ..+|++.||+|.|++++.|.+|++|++||||.+...
T Consensus 704 tG~~Ce~C~~gfrr~~~~-----~~~~-~~c~-~C~cngh---~~~Cd~~tG~C~C~~~t~G~~C~~C~~GfYg~~~~~- 772 (1705)
T KOG1836|consen 704 TGQFCESCAPGFRRLSPQ-----LGPF-CPCI-PCDCNGH---SNICDPRTGQCKCKHNTFGGQCAQCVDGFYGLPDLG- 772 (1705)
T ss_pred ccchhhhcchhhhccccc-----CCCC-Cccc-ccccCCc---cccccCCCCceecccCCCCCchhhhcCCCCCccccC-
Confidence 488999999999986321 1222 3454 7888887 468999999999999999999999999999998653
Q ss_pred CCCCCCCCccCCCCCCCCCCCCCCCCCCccc-cCCCcccCCCCcCCCCCCCCCC------CCCCCCCCccCCCCCC----
Q psy11285 81 YAPDIDGCLKCGCSQFGSVREDCEQMTGRCV-CKPGVKGSKCNECLDPNKKLGP------NGCMPGMEVKPCNGEP---- 149 (189)
Q Consensus 81 ~~~~~~~C~~C~C~~~gs~~~~C~~~tG~C~-C~~g~~G~~C~~C~~g~~~~~~------~~C~~~~~~~~C~~~~---- 149 (189)
....|++|.|+..++....++...+.|. |+++|+|++|++|..|||+... ..|+ .++|+.+.
T Consensus 773 ---~~~dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~rCe~c~dgyfg~p~~~~~~~~~c~----~c~c~~n~dp~~ 845 (1705)
T KOG1836|consen 773 ---TSGDCQPCPCPNGGACGQTPEILEVVCKNCPPGYTGLRCEECADGYFGNPLGHDGDVRPCQ----SCQCNFNVDPNA 845 (1705)
T ss_pred ---CCCCCccCCCCCChhhcCcCcccceecCCCCCCCcccccccCCCccccCCCCCCCCcccCc----cceeccccCccc
Confidence 2333999999999887788877789996 9999999999999999998642 2454 45666432
Q ss_pred -CCccCCCccccCCC---CCCCCCCCCCCCcccCcC-CCcCccC
Q psy11285 150 -PVINLQTGVELDCG---SGANREDCPSDAYCHITQ-NFARCCR 188 (189)
Q Consensus 150 -~~c~~~tg~c~~C~---~G~~C~~C~~g~~g~~~~-~~~~~~~ 188 (189)
..|+..+|.|++|. .|.+|+.|.++|||+... +.++.|+
T Consensus 846 ~g~c~~~tg~c~~ci~nT~g~~cd~c~~g~~gd~l~~~p~~~c~ 889 (1705)
T KOG1836|consen 846 FGNCNRLTGECLKCIHNTAGEYCDLCKEGYFGDPLAPNPEDKCF 889 (1705)
T ss_pred cccccccccceeeccCCcccccccccccCccccccCCCcCCccc
Confidence 46999999998885 799999999999999877 4444453
No 5
>KOG1836|consensus
Probab=99.76 E-value=4e-18 Score=166.54 Aligned_cols=161 Identities=30% Similarity=0.697 Sum_probs=136.8
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCCCCC-CCCCCCcCCCCCCCCCC--CCCCCCCCeeecCCCccCCCCCcCCCCcccCCC
Q psy11285 1 SGIYLKSCLDSWYGCCPDNKTLAQGPD-NAGCPSTCGCNKLGSTE--DACIEDTEQCKCKQGVGGLKCDRCEPGYWGLSK 77 (189)
Q Consensus 1 ~G~~C~~C~~G~~g~~~~~~~~~~g~~-~~~C~~~C~C~~~g~~~--~~C~~~tG~C~C~~~~~G~~C~~C~~G~~g~~~ 77 (189)
.|.+|++|++||||+. ..+. ...|. +|.|+..++.. ..|++.||+|.|++++.|..|.+|.+|||+..
T Consensus 864 ~g~~cd~c~~g~~gd~-------l~~~p~~~c~-~c~c~p~gs~~~~~~c~~~tGQcec~~~v~g~~c~~c~~g~fnl~- 934 (1705)
T KOG1836|consen 864 AGEYCDLCKEGYFGDP-------LAPNPEDKCF-ACGCVPAGSELPSLTCNPVTGQCECKPNVEGRDCLYCFKGFFNLN- 934 (1705)
T ss_pred ccccccccccCccccc-------cCCCcCCccc-cccCccCCcccccccCCCcccceeccCCCCccccccccccccccC-
Confidence 4889999999999982 1112 24587 99999999864 67999999999999999999999999999986
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCCCCCCCCccccCCCcccCCCCcCCCCCCCCCCCCCCCCCCccCCCCCCC---CccC
Q psy11285 78 ISSYAPDIDGCLKCGCSQFGSVREDCEQMTGRCVCKPGVKGSKCNECLDPNKKLGPNGCMPGMEVKPCNGEPP---VINL 154 (189)
Q Consensus 78 ~~~~~~~~~~C~~C~C~~~gs~~~~C~~~tG~C~C~~g~~G~~C~~C~~g~~~~~~~~C~~~~~~~~C~~~~~---~c~~ 154 (189)
...+|.+|.|+..|+.+..|+..||+|.|+++++|.+|++|.+++|++...+|. .+.|...+. .|++
T Consensus 935 ------s~~gC~~c~c~~~gs~~~~c~~~tGqc~c~~gVtgqrc~qc~~~~~~~~~~gc~----~c~c~~~Gs~~~qc~~ 1004 (1705)
T KOG1836|consen 935 ------SGVGCEPCNCDPTGSESSDCDVGTGQCYCRPGVTGQRCDQCETYHFGFQTEGCG----LCECDPLGSRGFQCDP 1004 (1705)
T ss_pred ------CCCCcccccccccccccccccccCCceeeecCccccccCccccCcccccccCCc----ceecccCCcccceecc
Confidence 356799999999999999999999999999999999999999999999888887 234443332 4899
Q ss_pred CCccccCCC---CCCCCCCCCCCCcccCcC
Q psy11285 155 QTGVELDCG---SGANREDCPSDAYCHITQ 181 (189)
Q Consensus 155 ~tg~c~~C~---~G~~C~~C~~g~~g~~~~ 181 (189)
.+|.|. |+ .|.+|++|.+++|+...+
T Consensus 1005 ~~G~c~-c~~~~~g~~c~~c~~~~~~~~~~ 1033 (1705)
T KOG1836|consen 1005 EDGQCP-CRPGFEGRRCDQCEEGFFGNAQG 1033 (1705)
T ss_pred cCCeee-ecCCCCCcccccccCCccccccC
Confidence 999985 64 799999999999976644
No 6
>KOG3512|consensus
Probab=99.39 E-value=7.7e-13 Score=114.28 Aligned_cols=134 Identities=25% Similarity=0.621 Sum_probs=101.1
Q ss_pred cCCCCCCCCCCCCCCCC---CCeeecCCCccCCCCCcCCCCcccCCCCCCCCCCCCCCccCCCCCCCCC---CCCCCCCC
Q psy11285 34 TCGCNKLGSTEDACIED---TEQCKCKQGVGGLKCDRCEPGYWGLSKISSYAPDIDGCLKCGCSQFGSV---REDCEQMT 107 (189)
Q Consensus 34 ~C~C~~~g~~~~~C~~~---tG~C~C~~~~~G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~C~~~gs~---~~~C~~~t 107 (189)
+|.||+|++ .|..+ +-.|.|++|++|+.|++|++.||..+-..........|.+|.|+.+.+. ...+...+
T Consensus 277 RCKCNgHAs---~Cv~d~~~~ltCdC~HNTaGPdCgrCKpfy~dRPW~raT~~~a~~c~ac~Cn~harrcrfn~Ely~lS 353 (592)
T KOG3512|consen 277 RCKCNGHAS---RCVMDESSHLTCDCEHNTAGPDCGRCKPFYYDRPWGRATALPANECVACNCNGHARRCRFNMELYRLS 353 (592)
T ss_pred eeeecCccc---eeeeccCCceEEecccCCCCCCcccccccccCCCccccccCCCccccccccchhhhhcccchhhhccc
Confidence 699999986 45332 2479999999999999999999987654322234567999999988761 12233223
Q ss_pred -----Ccc-ccCCCcccCCCCcCCCCCCCCCC------CCCCCCCCccCCCCCCC-----CccCCCccccCC---CCCCC
Q psy11285 108 -----GRC-VCKPGVKGSKCNECLDPNKKLGP------NGCMPGMEVKPCNGEPP-----VINLQTGVELDC---GSGAN 167 (189)
Q Consensus 108 -----G~C-~C~~g~~G~~C~~C~~g~~~~~~------~~C~~~~~~~~C~~~~~-----~c~~~tg~c~~C---~~G~~ 167 (189)
|.| .|+.+..|++|..|.+|||.... .-|+ .|++|+. .||..||.|. | ++|..
T Consensus 354 gr~SggvClnCrHnTaGrhChyCreGyyRd~s~pl~hrkaCk------~CdChpVGs~gktCNq~tGqCp-CkeGvtG~t 426 (592)
T KOG3512|consen 354 GRRSGGVCLNCRHNTAGRHCHYCREGYYRDGSKPLTHRKACK------ACDCHPVGSAGKTCNQTTGQCP-CKEGVTGLT 426 (592)
T ss_pred CccccceEeecccCCCCcccccccCccccCCCCCCchhhhhh------hcCCcccccccccccccCCccc-CCCCCcccc
Confidence 567 79999999999999999998642 3454 5666653 5899999995 7 48999
Q ss_pred CCCCCCCCcc
Q psy11285 168 REDCPSDAYC 177 (189)
Q Consensus 168 C~~C~~g~~g 177 (189)
|++|.+||+-
T Consensus 427 CnrCa~gyqq 436 (592)
T KOG3512|consen 427 CNRCAPGYQQ 436 (592)
T ss_pred cccccchhhc
Confidence 9999999973
No 7
>KOG4289|consensus
Probab=99.32 E-value=3.7e-12 Score=120.89 Aligned_cols=108 Identities=30% Similarity=0.749 Sum_probs=90.9
Q ss_pred CCCCCCccCCCCCC---CCCCCCCC-CCCCCcCCCCCCCCCCCCCCCCCCeeecCCCccCCCCCcCCCCcccCCCCCCCC
Q psy11285 7 SCLDSWYGCCPDNK---TLAQGPDN-AGCPSTCGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDRCEPGYWGLSKISSYA 82 (189)
Q Consensus 7 ~C~~G~~g~~~~~~---~~~~g~~~-~~C~~~C~C~~~g~~~~~C~~~tG~C~C~~~~~G~~C~~C~~G~~g~~~~~~~~ 82 (189)
.|++||+|..|+.. .|+.|||+ +.|. +|+|..+......|+..+|+|+|+.+ ||.+
T Consensus 1742 ~C~~g~~G~~Ce~~~dq~CPrGWWG~P~Cg-pC~CavsKgfdp~CnKt~G~CqCKe~------------hy~~------- 1801 (2531)
T KOG4289|consen 1742 ECPPGYTGPYCELRADQPCPRGWWGFPTCG-PCNCAVSKGFDPDCNKTNGQCQCKEN------------HYRP------- 1801 (2531)
T ss_pred ECCCcccCcchhhhccCCCCCcccCCCCcc-CccccccCCCCCCccccCcceeeccc------------cccC-------
Confidence 38999999999843 58999997 6897 99999988778899999999998875 4544
Q ss_pred CCCCCCccCCCCCCCCCCCCCCCCCCccccCCCcccCCCCcCCCCCCCCCCCCCCC
Q psy11285 83 PDIDGCLKCGCSQFGSVREDCEQMTGRCVCKPGVKGSKCNECLDPNKKLGPNGCMP 138 (189)
Q Consensus 83 ~~~~~C~~C~C~~~gs~~~~C~~~tG~C~C~~g~~G~~C~~C~~g~~~~~~~~C~~ 138 (189)
..+|.+|+|- .|+.+..|+ .+|+|.|++|..|++|++|...|.-....+|++
T Consensus 1802 --~~~Cl~CdC~-~Gs~Sr~C~-adGqC~C~pgaiGRqCdrCd~pfaevttlgCrv 1853 (2531)
T KOG4289|consen 1802 --IGSCLPCDCY-FGSDSRECD-ADGQCPCKPGAIGRQCDRCDNPFAEVTTLGCRV 1853 (2531)
T ss_pred --CCcceeeccc-cCCCccccc-CCCcCCCCCccccccccccCChhhhccccCcEE
Confidence 2449999999 899899999 699999999999999999998776665566763
No 8
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=99.00 E-value=5.8e-10 Score=68.22 Aligned_cols=40 Identities=38% Similarity=0.917 Sum_probs=37.1
Q ss_pred CCCCCCCCCCCCCCCCCCccccCCCcccCCCCcCCCCCCC
Q psy11285 91 CGCSQFGSVREDCEQMTGRCVCKPGVKGSKCNECLDPNKK 130 (189)
Q Consensus 91 C~C~~~gs~~~~C~~~tG~C~C~~g~~G~~C~~C~~g~~~ 130 (189)
|+|++.|++...|++++|+|.|+++|+|++|++|++|||+
T Consensus 1 C~C~~~G~~~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~g 40 (46)
T smart00180 1 CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYG 40 (46)
T ss_pred CcCCCCCCCCCcccCCCCEEECCCCCCCCCCCcCCCCcCC
Confidence 5788888877889999999999999999999999999998
No 9
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=98.94 E-value=1.3e-09 Score=67.80 Aligned_cols=44 Identities=34% Similarity=0.876 Sum_probs=40.3
Q ss_pred cCCCCCCCCCCCCCCCCCCccccCCCcccCCCCcCCCCCCCCCC
Q psy11285 90 KCGCSQFGSVREDCEQMTGRCVCKPGVKGSKCNECLDPNKKLGP 133 (189)
Q Consensus 90 ~C~C~~~gs~~~~C~~~tG~C~C~~g~~G~~C~~C~~g~~~~~~ 133 (189)
+|.|++.++++..|+..+|+|.|+++|+|++|++|+++||++..
T Consensus 1 ~C~C~~~g~~~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~~~~~ 44 (50)
T cd00055 1 PCDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLPS 44 (50)
T ss_pred CCcCcCCCCCCccccCCCCEEeCCCcCCCCCCCCCCCCCccCCC
Confidence 47899999888889999999999999999999999999999763
No 10
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=98.90 E-value=2.3e-09 Score=66.68 Aligned_cols=44 Identities=48% Similarity=1.109 Sum_probs=40.2
Q ss_pred cCCCCCCCCCCCCCCCCCCeeecCCCccCCCCCcCCCCcccCCC
Q psy11285 34 TCGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDRCEPGYWGLSK 77 (189)
Q Consensus 34 ~C~C~~~g~~~~~C~~~tG~C~C~~~~~G~~C~~C~~G~~g~~~ 77 (189)
+|.|+.++++...|+..+|+|.|+++|+|++|++|+++||+.+.
T Consensus 1 ~C~C~~~g~~~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~~~~~ 44 (50)
T cd00055 1 PCDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLPS 44 (50)
T ss_pred CCcCcCCCCCCccccCCCCEEeCCCcCCCCCCCCCCCCCccCCC
Confidence 47899998877889999999999999999999999999999863
No 11
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=98.83 E-value=4.8e-09 Score=64.14 Aligned_cols=40 Identities=53% Similarity=1.240 Sum_probs=36.2
Q ss_pred CCCCCCCCCCCCCCCCCCeeecCCCccCCCCCcCCCCccc
Q psy11285 35 CGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDRCEPGYWG 74 (189)
Q Consensus 35 C~C~~~g~~~~~C~~~tG~C~C~~~~~G~~C~~C~~G~~g 74 (189)
|+|+..+++...|++.+|+|.|+++|+|++|++|++|||+
T Consensus 1 C~C~~~G~~~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~g 40 (46)
T smart00180 1 CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYG 40 (46)
T ss_pred CcCCCCCCCCCcccCCCCEEECCCCCCCCCCCcCCCCcCC
Confidence 5677777766789999999999999999999999999999
No 12
>KOG4289|consensus
Probab=98.82 E-value=1.1e-08 Score=97.93 Aligned_cols=94 Identities=27% Similarity=0.750 Sum_probs=70.8
Q ss_pred CCeeecCCCccCCCCC-----cCCCCcccCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCccccCCCcccCCCCcCC
Q psy11285 51 TEQCKCKQGVGGLKCD-----RCEPGYWGLSKISSYAPDIDGCLKCGCSQFGSVREDCEQMTGRCVCKPGVKGSKCNECL 125 (189)
Q Consensus 51 tG~C~C~~~~~G~~C~-----~C~~G~~g~~~~~~~~~~~~~C~~C~C~~~gs~~~~C~~~tG~C~C~~g~~G~~C~~C~ 125 (189)
...|.|.++++|.+|| .|+.||||++. |.+|+|.........|+..+|+|+||.++.-
T Consensus 1738 GY~C~C~~g~~G~~Ce~~~dq~CPrGWWG~P~----------CgpC~CavsKgfdp~CnKt~G~CqCKe~hy~------- 1800 (2531)
T KOG4289|consen 1738 GYTCECPPGYTGPYCELRADQPCPRGWWGFPT----------CGPCNCAVSKGFDPDCNKTNGQCQCKENHYR------- 1800 (2531)
T ss_pred ceeEECCCcccCcchhhhccCCCCCcccCCCC----------ccCccccccCCCCCCccccCcceeecccccc-------
Confidence 5689999999999997 59999999874 8999999887777899999999999987631
Q ss_pred CCCCCCCCCCCCCCCCccCCCCC----CCCccCCCccccCCC---CCCCCCCCCCCC
Q psy11285 126 DPNKKLGPNGCMPGMEVKPCNGE----PPVINLQTGVELDCG---SGANREDCPSDA 175 (189)
Q Consensus 126 ~g~~~~~~~~C~~~~~~~~C~~~----~~~c~~~tg~c~~C~---~G~~C~~C~~g~ 175 (189)
-. .+|. +|++. ...|+ .+|+|. |. .|.+|++|..-|
T Consensus 1801 ----~~--~~Cl------~CdC~~Gs~Sr~C~-adGqC~-C~pgaiGRqCdrCd~pf 1843 (2531)
T KOG4289|consen 1801 ----PI--GSCL------PCDCYFGSDSRECD-ADGQCP-CKPGAIGRQCDRCDNPF 1843 (2531)
T ss_pred ----CC--Ccce------eeccccCCCccccc-CCCcCC-CCCccccccccccCChh
Confidence 11 2355 33322 23455 667773 74 789999997443
No 13
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=98.79 E-value=2.1e-09 Score=66.49 Aligned_cols=43 Identities=49% Similarity=1.180 Sum_probs=37.5
Q ss_pred CCCCCCCCCCCCCCCCCCeeecCCCccCCCCCcCCCCcccCCC
Q psy11285 35 CGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDRCEPGYWGLSK 77 (189)
Q Consensus 35 C~C~~~g~~~~~C~~~tG~C~C~~~~~G~~C~~C~~G~~g~~~ 77 (189)
|+|+.+++....|++.+|+|.|+++|+|++|++|+++||+.+.
T Consensus 1 C~C~~~~~~~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~~~~~ 43 (49)
T PF00053_consen 1 CDCNPHGSSSQTCDPSTGQCVCKPGTTGPRCDQCKPGYFGLPS 43 (49)
T ss_dssp ESSTTCCBCCSSEEETCEEESBSTTEESTTS-EE-TTEECSTT
T ss_pred CcCcCCCCCCCcccCCCCEEeccccccCCcCcCCCCccccccC
Confidence 5788888777899999999999999999999999999999864
No 14
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=98.74 E-value=2.8e-09 Score=65.94 Aligned_cols=43 Identities=40% Similarity=1.001 Sum_probs=37.3
Q ss_pred CCCCCCCCCCCCCCCCCCccccCCCcccCCCCcCCCCCCCCCC
Q psy11285 91 CGCSQFGSVREDCEQMTGRCVCKPGVKGSKCNECLDPNKKLGP 133 (189)
Q Consensus 91 C~C~~~gs~~~~C~~~tG~C~C~~g~~G~~C~~C~~g~~~~~~ 133 (189)
|+|++.++++..|++.+|+|.|+++|+|++|++|+++||++..
T Consensus 1 C~C~~~~~~~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~~~~~ 43 (49)
T PF00053_consen 1 CDCNPHGSSSQTCDPSTGQCVCKPGTTGPRCDQCKPGYFGLPS 43 (49)
T ss_dssp ESSTTCCBCCSSEEETCEEESBSTTEESTTS-EE-TTEECSTT
T ss_pred CcCcCCCCCCCcccCCCCEEeccccccCCcCcCCCCccccccC
Confidence 5788888888899999999999999999999999999999753
No 15
>KOG1225|consensus
Probab=97.92 E-value=3.4e-05 Score=69.21 Aligned_cols=85 Identities=33% Similarity=0.760 Sum_probs=52.3
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCCCCCCCCCeeecCCCccCCCCCc-------------------CCCCcccCCCCCCCCC
Q psy11285 23 AQGPDNAGCPSTCGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDR-------------------CEPGYWGLSKISSYAP 83 (189)
Q Consensus 23 ~~g~~~~~C~~~C~C~~~g~~~~~C~~~tG~C~C~~~~~G~~C~~-------------------C~~G~~g~~~~~~~~~ 83 (189)
..++.++.|. .=.|....+....|.. |+|+|.++|+|..|+. |.+||.|..+..
T Consensus 239 ~~~~~g~~c~-~~~C~~~c~~~g~c~~--G~CIC~~Gf~G~dC~e~~Cp~~cs~~g~~~~g~CiC~~g~~G~dCs~---- 311 (525)
T KOG1225|consen 239 PEGYFGPLCS-TIYCPGGCTGRGQCVE--GRCICPPGFTGDDCDELVCPVDCSGGGVCVDGECICNPGYSGKDCSI---- 311 (525)
T ss_pred CCceeCCccc-cccCCCCCcccceEeC--CeEeCCCCCcCCCCCcccCCcccCCCceecCCEeecCCCcccccccc----
Confidence 3444445554 4344444333345654 8999999999999873 444555544321
Q ss_pred CCCCCccCCCCCCCCCCCCCCCCCCccccCCCcccCCCCc
Q psy11285 84 DIDGCLKCGCSQFGSVREDCEQMTGRCVCKPGVKGSKCNE 123 (189)
Q Consensus 84 ~~~~C~~C~C~~~gs~~~~C~~~tG~C~C~~g~~G~~C~~ 123 (189)
..|. =+|.++| .|. .|+|.|.+||+|..|++
T Consensus 312 --~~cp-adC~g~G----~Ci--~G~C~C~~Gy~G~~C~~ 342 (525)
T KOG1225|consen 312 --RRCP-ADCSGHG----KCI--DGECLCDEGYTGELCIQ 342 (525)
T ss_pred --ccCC-ccCCCCC----ccc--CCceEeCCCCcCCcccc
Confidence 1111 1355444 576 79999999999999997
No 16
>KOG1388|consensus
Probab=97.63 E-value=4.7e-05 Score=60.47 Aligned_cols=85 Identities=33% Similarity=0.863 Sum_probs=66.7
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCCCCee-ecCCCccCCCCCcCCCCcccCCCCCCCCCCCCCCccCCCCCCCCCCCCCC
Q psy11285 26 PDNAGCPSTCGCNKLGSTEDACIEDTEQC-KCKQGVGGLKCDRCEPGYWGLSKISSYAPDIDGCLKCGCSQFGSVREDCE 104 (189)
Q Consensus 26 ~~~~~C~~~C~C~~~g~~~~~C~~~tG~C-~C~~~~~G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~C~~~gs~~~~C~ 104 (189)
|+.-.|. .|.|++++ .|.. .-.| .|..+.+|..|++|..||||+. +...|++|+|+.... .|.
T Consensus 44 W~fl~cP-~~~cNGh~----~c~t-~~v~~~~~N~~~g~~c~kc~~g~~Gdt-------N~g~c~~~~~~g~~~---~~~ 107 (217)
T KOG1388|consen 44 WRFLFCP-LCQCNGHS----DCNT-QHVCWRCENGTTGAHCEKCIVGFYGDT-------NGGKCQPCDCNGGAS---ACV 107 (217)
T ss_pred hhhhcCh-HHHhcCCC----Cccc-ceeeeeccCccccccCCceEEEEEecC-------CCCccCHhhhcCCee---eee
Confidence 3345676 78888653 4544 4566 7999999999999999999973 567899999987654 588
Q ss_pred CCCCccccC-CCcccCCCCcCCC
Q psy11285 105 QMTGRCVCK-PGVKGSKCNECLD 126 (189)
Q Consensus 105 ~~tG~C~C~-~g~~G~~C~~C~~ 126 (189)
..+++|.|+ -++.|..|++|..
T Consensus 108 ~~~~~c~c~~kgvvgd~c~~~e~ 130 (217)
T KOG1388|consen 108 TLTGKCFCTTKGVVGDLCPKCEV 130 (217)
T ss_pred ccCCccccccceEecccCccccc
Confidence 889999995 4899999998654
No 17
>KOG3509|consensus
Probab=97.43 E-value=0.0014 Score=62.50 Aligned_cols=121 Identities=20% Similarity=0.513 Sum_probs=78.8
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCee-ecCCCccCCCCCcCCCCcccCCCCCC
Q psy11285 2 GIYLKSCLDSWYGCCPDNKTLAQGPDNAGCPSTCGCNKLGSTEDACIEDTEQC-KCKQGVGGLKCDRCEPGYWGLSKISS 80 (189)
Q Consensus 2 G~~C~~C~~G~~g~~~~~~~~~~g~~~~~C~~~C~C~~~g~~~~~C~~~tG~C-~C~~~~~G~~C~~C~~G~~g~~~~~~ 80 (189)
|.+||.|.++|.... ..+.+...+. .|.++.|+. .|....+.+ .|+.++.|.+|+.|.+|||++.....
T Consensus 728 G~~ce~c~e~~~ls~------t~~~~~~~~~-~c~~~~h~~---~c~~~~~~nt~~q~~~~~~~~~~~~~g~~~da~~g~ 797 (964)
T KOG3509|consen 728 GTSCEDCAEGYTLST------TGGLYPGLCE-DCECNSHIS---QCEDDLGYNTDCQNNTEGDRCELCSPGTYGDARRGT 797 (964)
T ss_pred Ccccccccccccccc------cCCcCcccCc-ccccCCCcc---cccccccccccccccCccceeeecCCCccccCccCC
Confidence 566666666665541 1233445564 788888864 788888999 89999999999999999999976542
Q ss_pred CCCCCCCC---ccCCCCCCCCCCCCCCCCCCcc-ccCCCcccCCCCcCCCCCCCCCCC
Q psy11285 81 YAPDIDGC---LKCGCSQFGSVREDCEQMTGRC-VCKPGVKGSKCNECLDPNKKLGPN 134 (189)
Q Consensus 81 ~~~~~~~C---~~C~C~~~gs~~~~C~~~tG~C-~C~~g~~G~~C~~C~~g~~~~~~~ 134 (189)
.++....+ .++.+.+.. ...++...-.| .|.+|.+|..|+++.++|+++...
T Consensus 798 ~~D~~p~~~l~~~~~~~~r~--~l~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~atd 853 (964)
T KOG3509|consen 798 PEDCRPATALTIQCSCNNRS--PLSCDGFGPGCLLCPHNTEGTTCERVKAGYYGFATD 853 (964)
T ss_pred cccCCccchhhhhhhhcccC--ccccccCCCCcccCCCCccccchhhhccccccccCc
Confidence 21111100 011122111 11233323245 799999999999999999998643
No 18
>KOG3509|consensus
Probab=96.98 E-value=0.0024 Score=61.07 Aligned_cols=136 Identities=21% Similarity=0.416 Sum_probs=91.2
Q ss_pred CCCCCCeeecCCCccCCCCCcCCCCcccCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCcc-ccCCCcccCCCCcCC
Q psy11285 47 CIEDTEQCKCKQGVGGLKCDRCEPGYWGLSKISSYAPDIDGCLKCGCSQFGSVREDCEQMTGRC-VCKPGVKGSKCNECL 125 (189)
Q Consensus 47 C~~~tG~C~C~~~~~G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~C~~~gs~~~~C~~~tG~C-~C~~g~~G~~C~~C~ 125 (189)
++..+-+|.|++++.|.+|+.|.++|.-..... . ....+..|.++.+. ..|....+.+ .|+-++.|.+|+.|.
T Consensus 713 ~~~~~~~C~c~~g~~G~~ce~c~e~~~ls~t~~-~--~~~~~~~c~~~~h~---~~c~~~~~~nt~~q~~~~~~~~~~~~ 786 (964)
T KOG3509|consen 713 IAAEVEQCQCPKGLVGTSCEDCAEGYTLSTTGG-L--YPGLCEDCECNSHI---SQCEDDLGYNTDCQNNTEGDRCELCS 786 (964)
T ss_pred hhhhccccccCccccCcccccccccccccccCC-c--CcccCcccccCCCc---ccccccccccccccccCccceeeecC
Confidence 455677999999999999999999987664211 0 24445666666554 3798888999 799999999999999
Q ss_pred CCCCCCC----CCCCCC-CCCccCCCCCCCC---cc---CCCccccCCCCCCCCCCCCCCCcccCcCCCcCccC
Q psy11285 126 DPNKKLG----PNGCMP-GMEVKPCNGEPPV---IN---LQTGVELDCGSGANREDCPSDAYCHITQNFARCCR 188 (189)
Q Consensus 126 ~g~~~~~----~~~C~~-~~~~~~C~~~~~~---c~---~~tg~c~~C~~G~~C~~C~~g~~g~~~~~~~~~~~ 188 (189)
+||++.. ...+.| ....-+++.+..+ .+ +.+..+..-..|.+|+++.++++++.+-..+..+.
T Consensus 787 ~g~~~da~~g~~~D~~p~~~l~~~~~~~~r~~l~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~atdgS~~~~~ 860 (964)
T KOG3509|consen 787 PGTYGDARRGTPEDCRPATALTIQCSCNNRSPLSCDGFGPGCLLCPHNTEGTTCERVKAGYYGFATDGSPYDCS 860 (964)
T ss_pred CCccccCccCCcccCCccchhhhhhhhcccCccccccCCCCcccCCCCccccchhhhccccccccCcCCccccc
Confidence 9999864 223443 1111122222111 11 22333322347999999999999988877666543
No 19
>KOG1225|consensus
Probab=96.98 E-value=0.0016 Score=58.70 Aligned_cols=52 Identities=38% Similarity=0.921 Sum_probs=36.2
Q ss_pred CCeeecCCCccCCCCC-------------------cCCCCcccCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCccc
Q psy11285 51 TEQCKCKQGVGGLKCD-------------------RCEPGYWGLSKISSYAPDIDGCLKCGCSQFGSVREDCEQMTGRCV 111 (189)
Q Consensus 51 tG~C~C~~~~~G~~C~-------------------~C~~G~~g~~~~~~~~~~~~~C~~C~C~~~gs~~~~C~~~tG~C~ 111 (189)
.|+|+|+++|+|..|+ +|.+||.|..+.. . .|...+ .|. .| |.
T Consensus 295 ~g~CiC~~g~~G~dCs~~~cpadC~g~G~Ci~G~C~C~~Gy~G~~C~~----------~-~C~~~g----~cv--~g-C~ 356 (525)
T KOG1225|consen 295 DGECICNPGYSGKDCSIRRCPADCSGHGKCIDGECLCDEGYTGELCIQ----------R-ACSGGG----QCV--NG-CK 356 (525)
T ss_pred CCEeecCCCccccccccccCCccCCCCCcccCCceEeCCCCcCCcccc----------c-ccCCCc----eec--cC-ce
Confidence 5799999999999995 3556666665431 1 233332 343 67 99
Q ss_pred cCCCcccCC
Q psy11285 112 CKPGVKGSK 120 (189)
Q Consensus 112 C~~g~~G~~ 120 (189)
|+.||.|+.
T Consensus 357 C~~Gw~G~d 365 (525)
T KOG1225|consen 357 CKKGWRGPD 365 (525)
T ss_pred eccCccCCC
Confidence 999999987
No 20
>smart00051 DSL delta serrate ligand.
Probab=96.91 E-value=0.0015 Score=42.45 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=23.9
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCeeecCCCccCCCC
Q psy11285 30 GCPSTCGCNKLGSTEDACIEDTEQCKCKQGVGGLKC 65 (189)
Q Consensus 30 ~C~~~C~C~~~g~~~~~C~~~tG~C~C~~~~~G~~C 65 (189)
.|.+.|.+.........|++ +|+++|.++|+|..|
T Consensus 29 ~C~~~C~~~~d~~~~~~Cd~-~G~~~C~~Gw~G~~C 63 (63)
T smart00051 29 GCNKFCRPRDDFFGHYTCDE-NGNKGCLEGWMGPYC 63 (63)
T ss_pred ccCCEeCcCccccCCccCCc-CCCEecCCCCcCCCC
Confidence 45455655332222357988 799999999999876
No 21
>smart00051 DSL delta serrate ligand.
Probab=96.76 E-value=0.0019 Score=41.90 Aligned_cols=20 Identities=30% Similarity=0.707 Sum_probs=17.5
Q ss_pred CCCCCCCCccccCCCcccCCC
Q psy11285 101 EDCEQMTGRCVCKPGVKGSKC 121 (189)
Q Consensus 101 ~~C~~~tG~C~C~~g~~G~~C 121 (189)
..|+. +|.+.|.+||+|..|
T Consensus 44 ~~Cd~-~G~~~C~~Gw~G~~C 63 (63)
T smart00051 44 YTCDE-NGNKGCLEGWMGPYC 63 (63)
T ss_pred ccCCc-CCCEecCCCCcCCCC
Confidence 46987 799999999999876
No 22
>KOG4260|consensus
Probab=96.30 E-value=0.0062 Score=50.35 Aligned_cols=27 Identities=33% Similarity=0.818 Sum_probs=24.6
Q ss_pred CCeeecCCCccCCCCCcCCCCcccCCC
Q psy11285 51 TEQCKCKQGVGGLKCDRCEPGYWGLSK 77 (189)
Q Consensus 51 tG~C~C~~~~~G~~C~~C~~G~~g~~~ 77 (189)
.|.|.|.++|+|+.|..|.++||-...
T Consensus 167 sGkCkC~~GY~Gp~C~~Cg~eyfes~R 193 (350)
T KOG4260|consen 167 SGKCKCETGYTGPLCRYCGIEYFESSR 193 (350)
T ss_pred CCcccccCCCCCccccccchHHHHhhc
Confidence 689999999999999999999997654
No 23
>KOG1226|consensus
Probab=95.84 E-value=0.05 Score=50.76 Aligned_cols=19 Identities=68% Similarity=1.545 Sum_probs=16.1
Q ss_pred CCCCCCCccccCCCcccCCCC
Q psy11285 102 DCEQMTGRCVCKPGVKGSKCN 122 (189)
Q Consensus 102 ~C~~~tG~C~C~~g~~G~~C~ 122 (189)
.|. -|+|.|++||+|..|+
T Consensus 562 ~C~--CG~CvC~~GwtG~~C~ 580 (783)
T KOG1226|consen 562 RCE--CGRCVCNPGWTGSACN 580 (783)
T ss_pred eEe--CCcEEcCCCCccCCCC
Confidence 354 5899999999999997
No 24
>KOG4260|consensus
Probab=95.77 E-value=0.0092 Score=49.37 Aligned_cols=59 Identities=29% Similarity=0.570 Sum_probs=38.7
Q ss_pred cCCCccCCCCCcCCCCcccCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCccccCCCcccCCCCcCCCCCCC
Q psy11285 56 CKQGVGGLKCDRCEPGYWGLSKISSYAPDIDGCLKCGCSQFGSVREDCEQMTGRCVCKPGVKGSKCNECLDPNKK 130 (189)
Q Consensus 56 C~~~~~G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~C~~~gs~~~~C~~~tG~C~C~~g~~G~~C~~C~~g~~~ 130 (189)
|++|+.|+.|..|+-|.-.+ +. ..+ +|+..|+. .-+|.|.|.+||+|+.|..|.++||-
T Consensus 132 Cp~gtyGpdCl~Cpggser~-C~------GnG----~C~GdGsR-----~GsGkCkC~~GY~Gp~C~~Cg~eyfe 190 (350)
T KOG4260|consen 132 CPDGTYGPDCLQCPGGSERP-CF------GNG----SCHGDGSR-----EGSGKCKCETGYTGPLCRYCGIEYFE 190 (350)
T ss_pred cCCCCcCCccccCCCCCcCC-cC------CCC----cccCCCCC-----CCCCcccccCCCCCccccccchHHHH
Confidence 67777787777775442211 00 000 23444432 22789999999999999999999986
No 25
>KOG1388|consensus
Probab=95.57 E-value=0.0056 Score=48.82 Aligned_cols=56 Identities=36% Similarity=0.836 Sum_probs=44.4
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCeeecC-CCccCCCCCcCCC
Q psy11285 1 SGIYLKSCLDSWYGCCPDNKTLAQGPDNAGCPSTCGCNKLGSTEDACIEDTEQCKCK-QGVGGLKCDRCEP 70 (189)
Q Consensus 1 ~G~~C~~C~~G~~g~~~~~~~~~~g~~~~~C~~~C~C~~~g~~~~~C~~~tG~C~C~-~~~~G~~C~~C~~ 70 (189)
.|.+|++|..||||+ - .+..|+ +|.|++.+. .|+..+++|.|+ .++.|..|++|..
T Consensus 74 ~g~~c~kc~~g~~Gd-t---------N~g~c~-~~~~~g~~~---~~~~~~~~c~c~~kgvvgd~c~~~e~ 130 (217)
T KOG1388|consen 74 TGAHCEKCIVGFYGD-T---------NGGKCQ-PCDCNGGAS---ACVTLTGKCFCTTKGVVGDLCPKCEV 130 (217)
T ss_pred ccccCCceEEEEEec-C---------CCCccC-HhhhcCCee---eeeccCCccccccceEecccCccccc
Confidence 377999999999996 1 235687 899998763 688889999994 5899999988543
No 26
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=95.14 E-value=0.015 Score=32.49 Aligned_cols=25 Identities=48% Similarity=1.189 Sum_probs=20.5
Q ss_pred CCCCCCCCCCCCCCCCccccCCCcccCCC
Q psy11285 93 CSQFGSVREDCEQMTGRCVCKPGVKGSKC 121 (189)
Q Consensus 93 C~~~gs~~~~C~~~tG~C~C~~g~~G~~C 121 (189)
|..+| +|+..+|+|.|.++|+|..|
T Consensus 8 C~~~G----~C~~~~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 8 CSGHG----TCVSPCGRCVCDSGYTGPDC 32 (32)
T ss_pred cCCCC----EEeCCCCEEECCCCCcCCCC
Confidence 55555 68876799999999999876
No 27
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=94.66 E-value=0.033 Score=31.13 Aligned_cols=25 Identities=32% Similarity=0.981 Sum_probs=20.0
Q ss_pred CCCCCCCCCCCCCCCCeeecCCCccCCCC
Q psy11285 37 CNKLGSTEDACIEDTEQCKCKQGVGGLKC 65 (189)
Q Consensus 37 C~~~g~~~~~C~~~tG~C~C~~~~~G~~C 65 (189)
|.++| +|+..+++|+|.++|+|..|
T Consensus 8 C~~~G----~C~~~~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 8 CSGHG----TCVSPCGRCVCDSGYTGPDC 32 (32)
T ss_pred cCCCC----EEeCCCCEEECCCCCcCCCC
Confidence 55554 68876799999999999876
No 28
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=94.46 E-value=0.021 Score=25.37 Aligned_cols=13 Identities=38% Similarity=1.106 Sum_probs=9.9
Q ss_pred eeecCCCccCCCC
Q psy11285 53 QCKCKQGVGGLKC 65 (189)
Q Consensus 53 ~C~C~~~~~G~~C 65 (189)
+|+|+++|+|.+|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 4889999999876
No 29
>KOG1218|consensus
Probab=93.39 E-value=2.8 Score=34.82 Aligned_cols=78 Identities=28% Similarity=0.700 Sum_probs=45.1
Q ss_pred CCCCCCCcCCCCCCCCCCCCCCCCCCeeecCCCccCCCCCcCCCCcccCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q psy11285 27 DNAGCPSTCGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDRCEPGYWGLSKISSYAPDIDGCLKCGCSQFGSVREDCEQM 106 (189)
Q Consensus 27 ~~~~C~~~C~C~~~g~~~~~C~~~tG~C~C~~~~~G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~C~~~gs~~~~C~~~ 106 (189)
.+..|.+.+.++..-.. .+|......|.+..++.+.+|.. +++++..+. ..| .+. ..++..
T Consensus 100 ~g~~C~~~~~~~~~c~~-~~C~~~~~~c~~~~~~~~~~C~~--~~~~g~~C~----------~~c--~~~----~~~~~~ 160 (316)
T KOG1218|consen 100 EGPQCESPCPCGDGCAE-KTCANPRRECRCGGGYIGEQCGE--ENLVGLKCQ----------RDC--QCT----GGCDCK 160 (316)
T ss_pred CcccccCCCCcCCcccc-cccCCCccceecCCcCccccccc--cCCCCCCcc----------CCC--CCc----cccCCC
Confidence 33445445555432000 23444222577777777777765 566665432 122 111 246667
Q ss_pred CCccccCCCcccCCCCc
Q psy11285 107 TGRCVCKPGVKGSKCNE 123 (189)
Q Consensus 107 tG~C~C~~g~~G~~C~~ 123 (189)
++.|.|++||.|.++..
T Consensus 161 ~~~c~c~~g~~g~~~~~ 177 (316)
T KOG1218|consen 161 NGICTCQPGFVGVFCVE 177 (316)
T ss_pred CCceeccCCcccccccc
Confidence 89999999999998876
No 30
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=89.33 E-value=0.066 Score=34.70 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=13.0
Q ss_pred CCCCCCCCeeecCCCccCCCC
Q psy11285 45 DACIEDTEQCKCKQGVGGLKC 65 (189)
Q Consensus 45 ~~C~~~tG~C~C~~~~~G~~C 65 (189)
-.|+. +|+=+|.++|+|+.|
T Consensus 44 y~Cd~-~G~~~C~~Gw~G~~C 63 (63)
T PF01414_consen 44 YTCDS-NGNKVCLPGWTGPNC 63 (63)
T ss_dssp EEE-S-S--EEE-TTEESTTS
T ss_pred cccCC-CCCCCCCCCCcCCCC
Confidence 47886 798899999999876
No 31
>KOG1226|consensus
Probab=88.62 E-value=0.85 Score=42.87 Aligned_cols=55 Identities=36% Similarity=0.886 Sum_probs=33.2
Q ss_pred CeeecCCCccCCCCCcCCCCcccCCCCCCCCCCCCCCccC---CCCCCCCCCCCCCCCCCccccCCC-cccCCCCcCCC
Q psy11285 52 EQCKCKQGVGGLKCDRCEPGYWGLSKISSYAPDIDGCLKC---GCSQFGSVREDCEQMTGRCVCKPG-VKGSKCNECLD 126 (189)
Q Consensus 52 G~C~C~~~~~G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C---~C~~~gs~~~~C~~~tG~C~C~~g-~~G~~C~~C~~ 126 (189)
|+|+|.+||+|..|+ |.. ..+.|..= .|+..| .|. =|+|.|... +.|..|+.|+.
T Consensus 566 G~CvC~~GwtG~~C~-C~~-------------std~C~~~~G~iCSGrG----~C~--Cg~C~C~~~~~sG~~CE~cpt 624 (783)
T KOG1226|consen 566 GRCVCNPGWTGSACN-CPL-------------STDTCESSDGQICSGRG----TCE--CGRCKCTDPPYSGEFCEKCPT 624 (783)
T ss_pred CcEEcCCCCccCCCC-CCC-------------CCccccCCCCceeCCCc----eee--CCceEcCCCCcCcchhhcCCC
Confidence 778899999998884 221 01111110 233333 343 477888765 89999998765
No 32
>KOG1219|consensus
Probab=88.45 E-value=0.68 Score=48.67 Aligned_cols=65 Identities=34% Similarity=0.817 Sum_probs=38.1
Q ss_pred CeeecCCCccCCCCC--------------------------cCCCCcccCCCCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q psy11285 52 EQCKCKQGVGGLKCD--------------------------RCEPGYWGLSKISSYAPDIDGCLKCGCSQFGSVREDCEQ 105 (189)
Q Consensus 52 G~C~C~~~~~G~~C~--------------------------~C~~G~~g~~~~~~~~~~~~~C~~C~C~~~gs~~~~C~~ 105 (189)
.+|.|.+-|.|.+|| .|+.||.|..++.. ..+.|..-.|...| +|..
T Consensus 3886 y~CkCpsqysG~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gyTG~~Ce~~---Gi~eCs~n~C~~gg----~C~n 3958 (4289)
T KOG1219|consen 3886 YKCKCPSQYSGNHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGYTGKRCEAR---GISECSKNVCGTGG----QCIN 3958 (4289)
T ss_pred eEEeCcccccCcccccccccccCCCCCCCCEEEecCCCeeEeCCCCccCceeecc---cccccccccccCCc----eeec
Confidence 477888888888876 34445555443310 11224433444433 5766
Q ss_pred CCC--ccccCCCcccCCCCc
Q psy11285 106 MTG--RCVCKPGVKGSKCNE 123 (189)
Q Consensus 106 ~tG--~C~C~~g~~G~~C~~ 123 (189)
..| .|.|.+++.|+.|..
T Consensus 3959 ~~gsf~CncT~g~~gr~c~~ 3978 (4289)
T KOG1219|consen 3959 IPGSFHCNCTPGILGRTCCA 3978 (4289)
T ss_pred cCCceEeccChhHhcccCcc
Confidence 666 788888888887743
No 33
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=87.86 E-value=0.1 Score=33.80 Aligned_cols=19 Identities=42% Similarity=1.101 Sum_probs=12.8
Q ss_pred CCCCCCCccccCCCcccCCC
Q psy11285 102 DCEQMTGRCVCKPGVKGSKC 121 (189)
Q Consensus 102 ~C~~~tG~C~C~~g~~G~~C 121 (189)
.|+. +|+=.|.+||.|+.|
T Consensus 45 ~Cd~-~G~~~C~~Gw~G~~C 63 (63)
T PF01414_consen 45 TCDS-NGNKVCLPGWTGPNC 63 (63)
T ss_dssp EE-S-S--EEE-TTEESTTS
T ss_pred ccCC-CCCCCCCCCCcCCCC
Confidence 5885 899999999999876
No 34
>KOG1218|consensus
Probab=82.06 E-value=7.9 Score=32.05 Aligned_cols=22 Identities=27% Similarity=0.688 Sum_probs=15.6
Q ss_pred CCCCCCCeeecCCCccCCCCCc
Q psy11285 46 ACIEDTEQCKCKQGVGGLKCDR 67 (189)
Q Consensus 46 ~C~~~tG~C~C~~~~~G~~C~~ 67 (189)
.++..++.|.|++++.|.++..
T Consensus 156 ~~~~~~~~c~c~~g~~g~~~~~ 177 (316)
T KOG1218|consen 156 GCDCKNGICTCQPGFVGVFCVE 177 (316)
T ss_pred ccCCCCCceeccCCcccccccc
Confidence 3555677888888888777754
No 35
>KOG0196|consensus
Probab=78.03 E-value=3.9 Score=39.19 Aligned_cols=39 Identities=33% Similarity=0.749 Sum_probs=29.6
Q ss_pred CCeeecCCCc----cCCCCCcCCCCcccCCCCCCCCCCCCCCccCCCCC
Q psy11285 51 TEQCKCKQGV----GGLKCDRCEPGYWGLSKISSYAPDIDGCLKCGCSQ 95 (189)
Q Consensus 51 tG~C~C~~~~----~G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~C~~ 95 (189)
.|.|.|++|| .|..|+.|++|||-... ....|.+|.-+.
T Consensus 258 iG~C~C~aGye~~~~~~~C~aCp~G~yK~~~------~~~~C~~CP~~S 300 (996)
T KOG0196|consen 258 IGGCVCKAGYEEAENGKACQACPPGTYKASQ------GDSLCLPCPPNS 300 (996)
T ss_pred cCceeecCCCCcccCCCcceeCCCCcccCCC------CCCCCCCCCCCC
Confidence 6899999988 45799999999998754 234577765443
No 36
>KOG0196|consensus
Probab=76.10 E-value=4.2 Score=38.98 Aligned_cols=31 Identities=35% Similarity=0.843 Sum_probs=24.8
Q ss_pred CCccccCCCcc----cCCCCcCCCCCCCCCC--CCCC
Q psy11285 107 TGRCVCKPGVK----GSKCNECLDPNKKLGP--NGCM 137 (189)
Q Consensus 107 tG~C~C~~g~~----G~~C~~C~~g~~~~~~--~~C~ 137 (189)
.|.|.|++||. |..|..|++|+|.... ..|.
T Consensus 258 iG~C~C~aGye~~~~~~~C~aCp~G~yK~~~~~~~C~ 294 (996)
T KOG0196|consen 258 IGGCVCKAGYEEAENGKACQACPPGTYKASQGDSLCL 294 (996)
T ss_pred cCceeecCCCCcccCCCcceeCCCCcccCCCCCCCCC
Confidence 58999999874 6899999999998642 3555
No 37
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=75.88 E-value=36 Score=29.97 Aligned_cols=14 Identities=21% Similarity=0.432 Sum_probs=10.2
Q ss_pred CCCCcCCCCCCCCC
Q psy11285 119 SKCNECLDPNKKLG 132 (189)
Q Consensus 119 ~~C~~C~~g~~~~~ 132 (189)
-.|.+|..+||.+.
T Consensus 205 G~Ct~C~~~yFl~~ 218 (397)
T PF03302_consen 205 GTCTSCTDGYFLYK 218 (397)
T ss_pred Ccccccccchhhhc
Confidence 36778888888653
No 38
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=64.34 E-value=65 Score=28.33 Aligned_cols=12 Identities=25% Similarity=0.523 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCc
Q psy11285 165 GANREDCPSDAY 176 (189)
Q Consensus 165 G~~C~~C~~g~~ 176 (189)
...|..|.+|||
T Consensus 300 ~~~Ct~C~~Gyy 311 (397)
T PF03302_consen 300 AATCTACADGYY 311 (397)
T ss_pred cccccchhcccc
Confidence 367778888887
No 39
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=60.10 E-value=13 Score=19.86 Aligned_cols=14 Identities=50% Similarity=1.400 Sum_probs=10.9
Q ss_pred ccccCCCcccCCCC
Q psy11285 109 RCVCKPGVKGSKCN 122 (189)
Q Consensus 109 ~C~C~~g~~G~~C~ 122 (189)
.|.|+++|.|.+|+
T Consensus 25 ~C~C~~g~~g~~C~ 38 (38)
T cd00054 25 RCSCPPGYTGRNCE 38 (38)
T ss_pred EeECCCCCcCCcCC
Confidence 58888888887663
No 40
>KOG1214|consensus
Probab=59.42 E-value=17 Score=35.24 Aligned_cols=62 Identities=29% Similarity=0.671 Sum_probs=29.5
Q ss_pred CCeeecCCCccCCCCCcCCCCcccCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCC--ccccCCCcccC
Q psy11285 51 TEQCKCKQGVGGLKCDRCEPGYWGLSKISSYAPDIDGCLKCGCSQFGSVREDCEQMTG--RCVCKPGVKGS 119 (189)
Q Consensus 51 tG~C~C~~~~~G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~C~~~gs~~~~C~~~tG--~C~C~~g~~G~ 119 (189)
.|+++|.++=.+..==.|.|||-|+....- ..+.|.+=.|.+.. .|....| .|.|++||.|.
T Consensus 796 ~g~a~c~~hGgs~y~C~CLPGfsGDG~~c~---dvDeC~psrChp~A----~CyntpgsfsC~C~pGy~GD 859 (1289)
T KOG1214|consen 796 AGQARCVHHGGSTYSCACLPGFSGDGHQCT---DVDECSPSRCHPAA----TCYNTPGSFSCRCQPGYYGD 859 (1289)
T ss_pred CCceEEEecCCceEEEeecCCccCCccccc---cccccCccccCCCc----eEecCCCcceeecccCccCC
Confidence 455555544333322257888887753210 12334443344332 3433323 46666666553
No 41
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=57.21 E-value=26 Score=24.46 Aligned_cols=43 Identities=23% Similarity=0.456 Sum_probs=23.7
Q ss_pred CCCCcCCCCCCCCCC-CCCCCCCCccCCCCCCCCccCCCccccCCCCCCCCCCCCCCCc
Q psy11285 119 SKCNECLDPNKKLGP-NGCMPGMEVKPCNGEPPVINLQTGVELDCGSGANREDCPSDAY 176 (189)
Q Consensus 119 ~~C~~C~~g~~~~~~-~~C~~~~~~~~C~~~~~~c~~~tg~c~~C~~G~~C~~C~~g~~ 176 (189)
.+|..|.++|+.... ..|. .|.. -.|.+|.....|+.|..+|+
T Consensus 4 ~~Ct~C~~g~~~~~~~~~C~------~C~~---------~~C~~C~~~~~C~~C~~GY~ 47 (96)
T PTZ00382 4 AVCTSCDSDKKPNKDGSGCV------LCSV---------GNCKSCVVDGVCGECNSGFS 47 (96)
T ss_pred cccCcCCCCCccCCCCCcCC------cCCC---------CCCcCCCCCCccccCcCCcc
Confidence 467778888876432 3465 3331 02444544455666666655
No 42
>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains. When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.
Probab=54.80 E-value=35 Score=23.54 Aligned_cols=14 Identities=36% Similarity=0.828 Sum_probs=9.8
Q ss_pred CCCCcCCCCcccCC
Q psy11285 63 LKCDRCEPGYWGLS 76 (189)
Q Consensus 63 ~~C~~C~~G~~g~~ 76 (189)
..|..|++|+|-+.
T Consensus 33 t~C~~C~~g~ys~~ 46 (98)
T cd00185 33 TVCEPCPPGTYTDS 46 (98)
T ss_pred CeecCCCCCCcccC
Confidence 45667888888654
No 43
>PHA02714 CD-30-like protein; Provisional
Probab=51.13 E-value=18 Score=25.46 Aligned_cols=43 Identities=23% Similarity=0.599 Sum_probs=26.0
Q ss_pred cCCCCcccCCCCCCCCCCCCCCccCC-CCCCCCCCCCCCCCC-CccccCCCc
Q psy11285 67 RCEPGYWGLSKISSYAPDIDGCLKCG-CSQFGSVREDCEQMT-GRCVCKPGV 116 (189)
Q Consensus 67 ~C~~G~~g~~~~~~~~~~~~~C~~C~-C~~~gs~~~~C~~~t-G~C~C~~g~ 116 (189)
+|+++||-++. ...|.+|. |...-.....|.+.+ -.|.|++|+
T Consensus 23 qC~~dYY~Dpe-------~g~CtACVtC~~~lVEktPC~~ns~RvCeCkpGm 67 (110)
T PHA02714 23 TCPKDYYLEPE-------DGLCTACVTCLSNMVEKQSCGPDKPRKCQCGPGL 67 (110)
T ss_pred cCCCcccccCC-------CCceeeecccCCCcEEeccCCCCCCceecCCCCC
Confidence 57888887642 24466665 543222234576643 578998887
No 44
>PTZ00214 high cysteine membrane protein Group 4; Provisional
Probab=49.22 E-value=62 Score=31.30 Aligned_cols=14 Identities=29% Similarity=0.764 Sum_probs=8.5
Q ss_pred cCCCCCCCCCCCCCC
Q psy11285 123 ECLDPNKKLGPNGCM 137 (189)
Q Consensus 123 ~C~~g~~~~~~~~C~ 137 (189)
.|..|||..+ ..|.
T Consensus 619 ~C~~GYY~d~-~~C~ 632 (800)
T PTZ00214 619 ACVDGYYADG-DACL 632 (800)
T ss_pred cCCCCcccCC-Cccc
Confidence 5777777643 3455
No 45
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=46.09 E-value=10 Score=20.64 Aligned_cols=14 Identities=29% Similarity=0.743 Sum_probs=11.2
Q ss_pred CCeeecCCCccCCC
Q psy11285 51 TEQCKCKQGVGGLK 64 (189)
Q Consensus 51 tG~C~C~~~~~G~~ 64 (189)
+..|.|+++|+|++
T Consensus 19 ~y~C~C~~G~~G~~ 32 (32)
T PF00008_consen 19 GYTCECPPGYTGKR 32 (32)
T ss_dssp EEEEEEBTTEESTT
T ss_pred CEEeECCCCCccCC
Confidence 46899999998864
No 46
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=43.16 E-value=18 Score=19.67 Aligned_cols=15 Identities=33% Similarity=1.021 Sum_probs=10.8
Q ss_pred CeeecCCCcc-CCCCC
Q psy11285 52 EQCKCKQGVG-GLKCD 66 (189)
Q Consensus 52 G~C~C~~~~~-G~~C~ 66 (189)
..|.|+++|. |.+|+
T Consensus 24 ~~C~C~~g~~~g~~C~ 39 (39)
T smart00179 24 YRCECPPGYTDGRNCE 39 (39)
T ss_pred eEeECCCCCccCCcCC
Confidence 3688888887 77663
No 47
>PTZ00214 high cysteine membrane protein Group 4; Provisional
Probab=41.78 E-value=2.2e+02 Score=27.60 Aligned_cols=10 Identities=10% Similarity=0.039 Sum_probs=8.4
Q ss_pred CCCCCCCCCc
Q psy11285 4 YLKSCLDSWY 13 (189)
Q Consensus 4 ~C~~C~~G~~ 13 (189)
.|..|.+||+
T Consensus 449 ~CtsC~~g~~ 458 (800)
T PTZ00214 449 GCQQCSPGKI 458 (800)
T ss_pred cCccCCCCcE
Confidence 5889999985
No 48
>smart00181 EGF Epidermal growth factor-like domain.
Probab=40.76 E-value=24 Score=18.87 Aligned_cols=15 Identities=33% Similarity=0.981 Sum_probs=10.5
Q ss_pred CCeeecCCCccC-CCC
Q psy11285 51 TEQCKCKQGVGG-LKC 65 (189)
Q Consensus 51 tG~C~C~~~~~G-~~C 65 (189)
...|.|+++|.| ..|
T Consensus 19 ~~~C~C~~g~~g~~~C 34 (35)
T smart00181 19 SYTCSCPPGYTGDKRC 34 (35)
T ss_pred CeEeECCCCCccCCcc
Confidence 457788888877 554
No 49
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=39.89 E-value=27 Score=20.71 Aligned_cols=14 Identities=29% Similarity=0.622 Sum_probs=10.0
Q ss_pred CCCCcCCCCcccCC
Q psy11285 63 LKCDRCEPGYWGLS 76 (189)
Q Consensus 63 ~~C~~C~~G~~g~~ 76 (189)
..|+.|+.|+|.+.
T Consensus 9 ~~C~~Cp~GtYq~~ 22 (48)
T PF07699_consen 9 NKCQPCPKGTYQDE 22 (48)
T ss_pred CccCCCCCCccCCc
Confidence 36777888888764
No 50
>KOG1025|consensus
Probab=38.91 E-value=60 Score=31.86 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=10.5
Q ss_pred CCCCCC-CCCCCCcccC
Q psy11285 164 SGANRE-DCPSDAYCHI 179 (189)
Q Consensus 164 ~G~~C~-~C~~g~~g~~ 179 (189)
.|.+|- +||.|-.|..
T Consensus 563 dgp~CV~~CP~G~~G~~ 579 (1177)
T KOG1025|consen 563 DGPHCVSDCPDGVTGPK 579 (1177)
T ss_pred CCcchhccCCCcccCCC
Confidence 577776 6777766544
No 51
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=38.69 E-value=24 Score=18.40 Aligned_cols=13 Identities=31% Similarity=0.713 Sum_probs=9.2
Q ss_pred CCeeecCCCccCC
Q psy11285 51 TEQCKCKQGVGGL 63 (189)
Q Consensus 51 tG~C~C~~~~~G~ 63 (189)
...|.|+.+|.|.
T Consensus 20 ~~~C~C~~g~~g~ 32 (36)
T cd00053 20 SYRCVCPPGYTGD 32 (36)
T ss_pred CeEeECCCCCccc
Confidence 4567777777776
No 52
>KOG1214|consensus
Probab=38.52 E-value=31 Score=33.51 Aligned_cols=10 Identities=30% Similarity=0.620 Sum_probs=8.3
Q ss_pred CCCCCCCccC
Q psy11285 6 KSCLDSWYGC 15 (189)
Q Consensus 6 ~~C~~G~~g~ 15 (189)
..|+|||.|+
T Consensus 811 C~CLPGfsGD 820 (1289)
T KOG1214|consen 811 CACLPGFSGD 820 (1289)
T ss_pred EeecCCccCC
Confidence 3689999997
No 53
>PHA02887 EGF-like protein; Provisional
Probab=33.50 E-value=34 Score=24.95 Aligned_cols=17 Identities=35% Similarity=1.073 Sum_probs=12.4
Q ss_pred CCeeecCCCccCCCCCc
Q psy11285 51 TEQCKCKQGVGGLKCDR 67 (189)
Q Consensus 51 tG~C~C~~~~~G~~C~~ 67 (189)
.-.|.|..+|+|.+|+.
T Consensus 107 epsCrC~~GYtG~RCE~ 123 (126)
T PHA02887 107 EKFCICNKGYTGIRCDE 123 (126)
T ss_pred CceeECCCCcccCCCCc
Confidence 45677888888887764
No 54
>KOG1219|consensus
Probab=33.48 E-value=50 Score=36.09 Aligned_cols=63 Identities=29% Similarity=0.650 Sum_probs=41.8
Q ss_pred CCeeecCCCccCCCCCcCCCCcccCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCC--CccccCCCcccCCCCc
Q psy11285 51 TEQCKCKQGVGGLKCDRCEPGYWGLSKISSYAPDIDGCLKCGCSQFGSVREDCEQMT--GRCVCKPGVKGSKCNE 123 (189)
Q Consensus 51 tG~C~C~~~~~G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~C~~~gs~~~~C~~~t--G~C~C~~g~~G~~C~~ 123 (189)
.|.|.=.+ -.|-.| .|.+-|.|.-++. ....|.+-.|...| +|.+.. -.|.|+.+|+|.+|+.
T Consensus 3875 gG~C~~~~-~ggy~C-kCpsqysG~~CEi----~~epC~snPC~~Gg----tCip~~n~f~CnC~~gyTG~~Ce~ 3939 (4289)
T KOG1219|consen 3875 GGTCISQP-KGGYKC-KCPSQYSGNHCEI----DLEPCASNPCLTGG----TCIPFYNGFLCNCPNGYTGKRCEA 3939 (4289)
T ss_pred CCEecCCC-CCceEE-eCcccccCccccc----ccccccCCCCCCCC----EEEecCCCeeEeCCCCccCceeec
Confidence 46664332 345566 6888999987753 23334444465554 687754 3699999999999986
No 55
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=32.05 E-value=61 Score=23.92 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=9.7
Q ss_pred cCCCCcCCCCCCCC
Q psy11285 118 GSKCNECLDPNKKL 131 (189)
Q Consensus 118 G~~C~~C~~g~~~~ 131 (189)
+.-|.+|++|++..
T Consensus 41 ~~CC~kCPPGt~v~ 54 (127)
T PHA02637 41 NLCCLSCPPGTYAS 54 (127)
T ss_pred CeEcCCCCCCCEEe
Confidence 34567788887764
No 56
>KOG4611|consensus
Probab=26.10 E-value=85 Score=27.64 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=13.8
Q ss_pred CCCCcCCCCCCCCCCCCCC
Q psy11285 119 SKCNECLDPNKKLGPNGCM 137 (189)
Q Consensus 119 ~~C~~C~~g~~~~~~~~C~ 137 (189)
..|..|+.|||..+..-|.
T Consensus 98 afcgncasgfyrndngyct 116 (747)
T KOG4611|consen 98 AFCGNCASGFYRNDNGYCT 116 (747)
T ss_pred cccccccccceECCCcccc
Confidence 3577799999987755554
No 57
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=25.09 E-value=53 Score=24.38 Aligned_cols=18 Identities=33% Similarity=1.043 Sum_probs=14.5
Q ss_pred CCCeeecCCCccCCCCCc
Q psy11285 50 DTEQCKCKQGVGGLKCDR 67 (189)
Q Consensus 50 ~tG~C~C~~~~~G~~C~~ 67 (189)
..-.|.|..||+|.+||.
T Consensus 65 ~~~~CrC~~GYtGeRCEh 82 (139)
T PHA03099 65 DGMYCRCSHGYTGIRCQH 82 (139)
T ss_pred CCceeECCCCcccccccc
Confidence 345788999999999976
No 58
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=23.77 E-value=75 Score=17.89 Aligned_cols=16 Identities=38% Similarity=1.043 Sum_probs=11.1
Q ss_pred CCCCC-CCccccCCCcc
Q psy11285 102 DCEQM-TGRCVCKPGVK 117 (189)
Q Consensus 102 ~C~~~-tG~C~C~~g~~ 117 (189)
.||+. .++|.|++||+
T Consensus 11 ~CDpn~~~~C~CPeGyI 27 (34)
T PF09064_consen 11 DCDPNSPGQCFCPEGYI 27 (34)
T ss_pred ccCCCCCCceeCCCceE
Confidence 35552 56899888886
Done!