Query psy11285
Match_columns 189
No_of_seqs 191 out of 1703
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 22:55:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11285.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11285hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1klo_A Laminin; glycoprotein; 99.9 1.2E-25 4.1E-30 172.2 4.7 128 1-137 28-161 (162)
2 1klo_A Laminin; glycoprotein; 99.9 3.4E-22 1.2E-26 153.0 6.6 141 35-189 1-162 (162)
3 4aqs_A Laminin subunit beta-1; 99.6 7E-16 2.4E-20 137.3 7.6 143 2-159 354-512 (525)
4 4aqs_A Laminin subunit beta-1; 99.6 6.5E-16 2.2E-20 137.5 4.4 107 2-123 417-525 (525)
5 4aqt_A Laminin subunit gamma-1 99.5 3E-15 1E-19 128.0 3.2 104 34-137 254-365 (375)
6 2gy5_A Angiopoietin-1 receptor 99.5 1.4E-14 4.7E-19 125.9 7.0 128 7-171 188-321 (423)
7 2y38_A Laminin subunit alpha-5 99.5 2.2E-14 7.5E-19 123.4 6.0 96 34-132 265-382 (403)
8 2gy5_A Angiopoietin-1 receptor 99.2 4.9E-12 1.7E-16 109.9 4.6 102 8-125 220-322 (423)
9 2y38_A Laminin subunit alpha-5 99.2 8.2E-12 2.8E-16 107.4 5.7 74 1-78 295-384 (403)
10 3zyj_B Netrin-G1; cell adhesio 99.1 1.7E-11 5.8E-16 105.9 3.1 109 34-160 296-415 (426)
11 4aqt_A Laminin subunit gamma-1 99.1 3.9E-11 1.3E-15 102.6 3.5 83 1-94 281-370 (375)
12 3zyj_B Netrin-G1; cell adhesio 98.6 1.1E-08 3.6E-13 88.5 2.9 93 1-116 322-420 (426)
13 2ygq_A WIF-1, WNT inhibitory f 98.3 5.2E-07 1.8E-11 75.6 4.3 20 46-66 192-211 (324)
14 3fcs_B Integrin beta-3; beta p 98.2 2.6E-06 8.8E-11 78.0 8.4 50 7-66 461-522 (690)
15 2vj2_A Jagged-1; signalling, p 98.2 5.9E-07 2E-11 68.3 2.8 47 6-67 19-65 (169)
16 2vj2_A Jagged-1; signalling, p 98.1 8.2E-07 2.8E-11 67.5 1.3 76 7-122 53-128 (169)
17 3k6s_B Integrin beta-2; cell r 98.1 3.8E-06 1.3E-10 76.8 5.7 101 7-125 449-594 (687)
18 3k6s_B Integrin beta-2; cell r 98.0 1.8E-05 6.1E-10 72.4 8.1 75 35-122 425-513 (687)
19 2ygq_A WIF-1, WNT inhibitory f 97.9 1E-05 3.5E-10 67.7 4.8 20 46-66 224-243 (324)
20 2vj3_A Neurogenic locus notch 97.6 3.5E-05 1.2E-09 56.1 3.7 85 7-123 31-119 (135)
21 3fcs_B Integrin beta-3; beta p 97.5 0.00013 4.4E-09 66.8 5.8 23 51-74 457-479 (690)
22 4d90_A EGF-like repeat and dis 97.2 0.00055 1.9E-08 49.8 6.0 53 51-123 79-133 (143)
23 2p28_B Integrin beta-2; hybrid 96.8 0.00024 8.1E-09 56.2 0.7 87 7-123 110-214 (217)
24 2wg3_C Hedgehog-interacting pr 96.6 0.00034 1.2E-08 61.1 0.3 53 46-123 403-455 (463)
25 3tbd_A Netrin-G2, laminet-2; l 96.5 0.00071 2.4E-08 56.7 1.3 42 34-78 269-312 (338)
26 2vj3_A Neurogenic locus notch 95.9 0.0048 1.6E-07 44.5 2.9 58 46-123 20-81 (135)
27 2p28_B Integrin beta-2; hybrid 95.5 0.0025 8.7E-08 50.2 0.2 58 52-122 107-174 (217)
28 1tpg_A T-plasminogen activator 94.8 0.011 3.8E-07 39.8 1.9 16 108-123 71-86 (91)
29 4d90_A EGF-like repeat and dis 94.7 0.042 1.4E-06 39.5 4.9 61 51-122 22-94 (143)
30 2wg3_C Hedgehog-interacting pr 92.8 0.024 8.1E-07 49.4 0.5 44 67-123 380-423 (463)
31 3fl7_A Ephrin receptor; ATP-bi 92.5 0.073 2.5E-06 47.2 3.2 61 46-117 257-319 (536)
32 3urf_Z Tumor necrosis factor r 91.9 0.039 1.3E-06 41.7 0.6 51 62-117 38-91 (171)
33 3qd6_R CD40L receptor, tumor n 91.2 0.2 6.8E-06 37.9 4.0 51 62-117 36-90 (177)
34 3tbd_A Netrin-G2, laminet-2; l 90.3 0.091 3.1E-06 43.9 1.4 41 89-132 268-310 (338)
35 3k51_B Decoy receptor 3; DCR3, 90.1 0.075 2.5E-06 40.3 0.7 51 62-117 40-93 (176)
36 2c4f_L Coagulation factor VII 89.8 0.092 3.2E-06 38.1 1.0 22 46-67 60-83 (142)
37 3me4_A Tumor necrosis factor r 89.2 0.098 3.4E-06 41.0 0.8 57 55-116 48-117 (216)
38 3u3p_A Tumor necrosis factor r 88.1 0.19 6.6E-06 41.5 1.8 51 62-117 44-97 (313)
39 1yo8_A Thrombospondin-2; EGF, 87.8 0.21 7.3E-06 45.2 2.1 15 108-122 129-145 (634)
40 1edm_B Factor IX; epidermal gr 87.6 0.28 9.5E-06 27.1 1.8 22 102-123 16-39 (39)
41 1x7a_L Coagulation factor IX, 87.6 0.58 2E-05 34.0 4.0 22 46-67 61-84 (146)
42 1sg1_X Tumor necrosis factor r 87.3 0.13 4.6E-06 38.0 0.4 52 61-117 32-86 (161)
43 1jma_B Herpesvirus entry media 86.8 0.15 5E-06 38.2 0.4 29 62-95 34-63 (167)
44 3alq_R Tumor necrosis factor r 86.0 0.25 8.5E-06 37.1 1.3 50 62-117 40-93 (173)
45 2uwi_A CRME protein; receptor, 84.4 0.35 1.2E-05 35.2 1.4 51 62-117 35-88 (142)
46 3u7u_G Neuregulin 1; signaling 84.2 0.59 2E-05 28.4 2.2 16 108-123 34-49 (55)
47 1a3p_A Epidermal growth factor 83.1 0.72 2.5E-05 26.4 2.2 17 51-67 25-41 (45)
48 2hey_R Tumor necrosis factor r 83.1 0.4 1.4E-05 34.9 1.3 71 62-138 37-119 (146)
49 3fl7_A Ephrin receptor; ATP-bi 81.1 0.72 2.4E-05 40.8 2.4 35 103-137 258-296 (536)
50 1k36_A Epiregulin; EGF-like fo 79.8 0.9 3.1E-05 26.3 1.8 17 51-67 27-43 (46)
51 1uzk_A Fibrillin-1; glycoprote 79.6 0.085 2.9E-06 38.9 -3.6 66 108-179 75-156 (162)
52 2c4f_L Coagulation factor VII 78.7 0.52 1.8E-05 34.0 0.6 51 7-66 71-128 (142)
53 3u7u_G Neuregulin 1; signaling 78.3 1.5 5.1E-05 26.5 2.5 17 51-67 33-49 (55)
54 1egf_A Epidermal growth factor 78.2 2.4 8.2E-05 25.1 3.4 23 51-73 28-50 (53)
55 1x7a_L Coagulation factor IX, 77.3 2.8 9.4E-05 30.3 4.2 22 102-123 61-84 (146)
56 2ygo_A WIF-1, WNT inhibitory f 77.1 1.6 5.3E-05 33.4 2.8 22 101-123 159-180 (188)
57 1skz_A Antistasin; factor XA i 76.5 1.3 4.3E-05 31.4 2.0 87 29-137 6-104 (119)
58 2bou_A EGF-like module contain 74.0 1.3 4.4E-05 31.6 1.6 15 52-66 68-82 (143)
59 3ltf_D Protein spitz; receptor 72.3 1.9 6.6E-05 26.2 1.9 20 52-71 33-53 (58)
60 1iox_A Betacellulin; EGF-like 68.9 1.8 6E-05 25.7 1.1 16 52-67 30-45 (50)
61 3e50_C Protransforming growth 68.6 2.2 7.4E-05 25.4 1.5 17 51-67 29-45 (50)
62 3ca7_A Protein spitz; argos, E 68.3 2.1 7.1E-05 25.2 1.4 16 52-67 33-48 (52)
63 2rnl_A Amphiregulin; AR, color 67.3 2.9 9.9E-05 24.8 1.8 16 52-67 34-49 (50)
64 2ygo_A WIF-1, WNT inhibitory f 67.2 4.1 0.00014 31.1 3.1 28 36-68 154-181 (188)
65 1hae_A Heregulin-alpha; growth 66.2 1.9 6.4E-05 26.5 0.9 17 107-123 31-47 (63)
66 1nql_B Epidermal growth factor 65.2 2.6 8.9E-05 25.1 1.4 17 51-67 28-44 (53)
67 4fhq_A Tumor necrosis factor r 64.4 2.8 9.4E-05 30.1 1.6 51 62-117 36-90 (134)
68 2e26_A Reelin, reeler protein; 63.9 1.2 4E-05 40.9 -0.6 26 92-123 540-565 (725)
69 2p26_A Integrin beta-2; hybrid 63.6 3.1 0.00011 33.6 2.0 15 52-66 207-221 (280)
70 3h5c_B Vitamin K-dependent pro 63.0 13 0.00045 29.7 5.7 15 52-66 26-40 (317)
71 1nfu_B Coagulation factor XA, 61.5 0.69 2.4E-05 35.5 -2.2 21 46-66 55-77 (195)
72 2vh0_B Activated factor XA lig 60.6 0.7 2.4E-05 33.0 -2.2 15 52-66 63-77 (134)
73 3tje_F Tumor necrosis factor r 58.8 3.8 0.00013 30.2 1.5 50 63-117 64-118 (156)
74 1z1y_A Ookinete surface protei 53.0 2 7E-05 31.9 -0.8 22 102-123 152-175 (186)
75 2e26_A Reelin, reeler protein; 52.4 2 7E-05 39.3 -1.0 45 7-67 521-565 (725)
76 1emn_A Fibrillin; extracellula 50.2 6.7 0.00023 25.1 1.5 14 52-65 26-41 (82)
77 1mox_A Epidermal growth factor 49.5 17 0.00059 31.7 4.4 25 52-76 222-248 (501)
78 1xdt_R Hbegf, heparin-binding 48.2 6.6 0.00022 25.6 1.2 16 52-67 62-77 (79)
79 1yo8_A Thrombospondin-2; EGF, 47.9 7.8 0.00027 35.0 2.0 16 164-179 68-83 (634)
80 1aut_L Activated protein C; se 44.2 12 0.0004 25.5 2.1 22 102-123 27-50 (114)
81 2k2s_B Micronemal protein 6; m 41.9 6.7 0.00023 24.1 0.4 22 102-123 26-50 (61)
82 2fd6_A Urokinase-type plasmino 40.9 13 0.00045 25.8 1.9 15 53-67 20-34 (122)
83 3v65_B Low-density lipoprotein 30.2 14 0.00048 30.5 0.7 16 108-123 64-83 (386)
84 1g1s_A P-selectin; selectin, l 29.9 19 0.00064 25.6 1.3 14 53-66 141-154 (162)
85 3v4v_B Integrin beta-7; cell a 29.1 12 0.0004 32.9 0.0 32 91-122 457-493 (503)
86 2i9a_A Urokinase-type plasmino 29.1 29 0.00098 25.0 2.1 30 34-67 12-46 (145)
87 2p26_A Integrin beta-2; hybrid 28.2 18 0.00061 29.2 1.0 16 107-122 206-221 (280)
88 3p5b_L Low density lipoprotein 25.9 45 0.0015 27.5 3.1 16 51-66 20-38 (400)
89 2ahx_A P180ERBB4, receptor tyr 25.3 22 0.00076 31.8 1.1 74 53-130 495-575 (617)
90 3h5c_B Vitamin K-dependent pro 25.1 57 0.0019 25.8 3.5 15 108-122 26-40 (317)
91 3t3p_B Integrin beta-3; integr 24.1 19 0.00065 31.3 0.4 32 91-122 435-472 (472)
92 3t3p_B Integrin beta-3; integr 24.1 24 0.00083 30.6 1.1 32 35-66 435-472 (472)
93 1du3_A Death receptor 5; trail 23.5 33 0.0011 24.1 1.5 13 63-75 39-52 (130)
94 1ext_A Tumor necrosis factor r 22.0 44 0.0015 24.2 2.1 50 63-117 40-93 (162)
No 1
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=99.91 E-value=1.2e-25 Score=172.25 Aligned_cols=128 Identities=30% Similarity=0.731 Sum_probs=103.9
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcCCCCCCCCC--CCCCCCCCCee-ecCCCccCCCCCcCCCCcccCCC
Q psy11285 1 SGIYLKSCLDSWYGCCPDNKTLAQGPDNAGCPSTCGCNKLGST--EDACIEDTEQC-KCKQGVGGLKCDRCEPGYWGLSK 77 (189)
Q Consensus 1 ~G~~C~~C~~G~~g~~~~~~~~~~g~~~~~C~~~C~C~~~g~~--~~~C~~~tG~C-~C~~~~~G~~C~~C~~G~~g~~~ 77 (189)
+|++||+|++||||+.... ......|+ +|+|++++.. ...|++.+|+| .|+++|+|++||+|++||||++.
T Consensus 28 ~G~~Ce~C~~g~~g~~~~~-----~~~~~~C~-~C~C~~~~~~~~~~~C~~~tG~C~~C~~g~~G~~Ce~C~~Gy~g~~~ 101 (162)
T 1klo_A 28 AGKRCELCDDGYFGDPLGS-----NGPVRLCR-PCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPL 101 (162)
T ss_dssp ESTTSCEECTTEEEETTCT-----TSSCEEEE-ECCSTTCBCTTCSCCBCTTTCCBCCBCTTEETTTTCEECTTEEECTT
T ss_pred cCCCCcCCCCCCcCCcccc-----cCCCCCCe-eCcCCCCCCcccCCcccCCCCcccCCCCCCcCCCcCcCchhhcCCcc
Confidence 4889999999999973321 12235686 8999988643 24799999999 59999999999999999999875
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCC--CCCCCCCccccCCCcccCCCCcCCCCCCCCCC-CCCC
Q psy11285 78 ISSYAPDIDGCLKCGCSQFGSVRE--DCEQMTGRCVCKPGVKGSKCNECLDPNKKLGP-NGCM 137 (189)
Q Consensus 78 ~~~~~~~~~~C~~C~C~~~gs~~~--~C~~~tG~C~C~~g~~G~~C~~C~~g~~~~~~-~~C~ 137 (189)
... ....|++|.|++.++++. .|++++|+|.|+++|+|++|++|++|||++.. .+|+
T Consensus 102 ~~~---~~~~C~~C~C~~~Gs~~~~~~Cd~~tG~C~C~~g~~G~~Cd~C~~g~~g~~~~~GC~ 161 (162)
T 1klo_A 102 APN---PADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGCE 161 (162)
T ss_dssp CSS---GGGSEEECCCCTTTBGGGCCCCCTTTCCCCBCTTEESTTCCEECTTCBCGGGSSCCB
T ss_pred ccC---CCCCCeeccCCCCCccCCCCCCCCCCCEeECCCCCcCCCCCCCCCCcccCCCCCCcC
Confidence 421 235699999999987753 89999999999999999999999999999863 4665
No 2
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=99.86 E-value=3.4e-22 Score=152.99 Aligned_cols=141 Identities=26% Similarity=0.562 Sum_probs=106.8
Q ss_pred CCCCCCCCCCCCCCCCC----Cee-ecCCCccCCCCCcCCCCcccCCCCCCCCCCCCCCccCCCCCCCCCC--CCCCCCC
Q psy11285 35 CGCNKLGSTEDACIEDT----EQC-KCKQGVGGLKCDRCEPGYWGLSKISSYAPDIDGCLKCGCSQFGSVR--EDCEQMT 107 (189)
Q Consensus 35 C~C~~~g~~~~~C~~~t----G~C-~C~~~~~G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~C~~~gs~~--~~C~~~t 107 (189)
|+|++++ .|+..+ ++| .|+++|+|.+||+|++|||+.+.... .....|++|+|++.++.. ..|++++
T Consensus 1 C~C~~~g----~C~~~~~~g~~~C~~C~~g~~G~~Ce~C~~g~~g~~~~~~--~~~~~C~~C~C~~~~~~~~~~~C~~~t 74 (162)
T 1klo_A 1 CPCPGGS----SCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSN--GPVRLCRPCQCNDNIDPNAVGNCNRLT 74 (162)
T ss_dssp CCSCTTC----CEEECSSSCCEEECSCCTTEESTTSCEECTTEEEETTCTT--SSCEEEEECCSTTCBCTTCSCCBCTTT
T ss_pred CcCcCcC----cccccCCCCCEEeCCCCCCCcCCCCcCCCCCCcCCccccc--CCCCCCeeCcCCCCCCcccCCcccCCC
Confidence 4566664 465543 689 79999999999999999999865321 123568999999875432 4799999
Q ss_pred Cccc-cCCCcccCCCCcCCCCCCCCCC-----CCCCCCCCccCCCCCC-----CCccCCCccccCCC---CCCCCCCCCC
Q psy11285 108 GRCV-CKPGVKGSKCNECLDPNKKLGP-----NGCMPGMEVKPCNGEP-----PVINLQTGVELDCG---SGANREDCPS 173 (189)
Q Consensus 108 G~C~-C~~g~~G~~C~~C~~g~~~~~~-----~~C~~~~~~~~C~~~~-----~~c~~~tg~c~~C~---~G~~C~~C~~ 173 (189)
|+|+ |+++|+|++|++|++|||+... ..|+ .+.|+... ..|++.+|.|. |. .|.+|++|++
T Consensus 75 G~C~~C~~g~~G~~Ce~C~~Gy~g~~~~~~~~~~C~----~C~C~~~Gs~~~~~~Cd~~tG~C~-C~~g~~G~~Cd~C~~ 149 (162)
T 1klo_A 75 GECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCK----ACACNPYGTVQQQSSCNPVTGQCQ-CLPHVSGRDCGTCDP 149 (162)
T ss_dssp CCBCCBCTTEETTTTCEECTTEEECTTCSSGGGSEE----ECCCCTTTBGGGCCCCCTTTCCCC-BCTTEESTTCCEECT
T ss_pred CcccCCCCCCcCCCcCcCchhhcCCccccCCCCCCe----eccCCCCCccCCCCCCCCCCCEeE-CCCCCcCCCCCCCCC
Confidence 9995 9999999999999999999642 2454 34555433 26999999985 74 7999999999
Q ss_pred CCcccCcCCCcCccCC
Q psy11285 174 DAYCHITQNFARCCRK 189 (189)
Q Consensus 174 g~~g~~~~~~~~~~~~ 189 (189)
||||..++ .+|++
T Consensus 150 g~~g~~~~---~GC~~ 162 (162)
T 1klo_A 150 GYYNLQSG---QGCER 162 (162)
T ss_dssp TCBCGGGS---SCCBC
T ss_pred CcccCCCC---CCcCC
Confidence 99976654 45653
No 3
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=99.61 E-value=7e-16 Score=137.25 Aligned_cols=143 Identities=29% Similarity=0.642 Sum_probs=82.8
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcCCCCCCCCCC---------CCCCCCCCeeecCCCccCCCCCcCCCCc
Q psy11285 2 GIYLKSCLDSWYGCCPDNKTLAQGPDNAGCPSTCGCNKLGSTE---------DACIEDTEQCKCKQGVGGLKCDRCEPGY 72 (189)
Q Consensus 2 G~~C~~C~~G~~g~~~~~~~~~~g~~~~~C~~~C~C~~~g~~~---------~~C~~~tG~C~C~~~~~G~~C~~C~~G~ 72 (189)
|.+|++|.+||++....... ....+. +|.|+..+... ..+....+.|.|.+++.|.+|++|++||
T Consensus 354 G~~Ce~C~~g~~~~~~~~~~-----~~~~~~-~C~C~~~~~~~~~~C~~~~~~~~~~~~~~C~C~~g~~G~~C~~C~~Gy 427 (525)
T 4aqs_A 354 GRNCEQCKPFYFQHPERDIR-----DPNLCE-PCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGF 427 (525)
T ss_dssp STTSCEECTTEEECSSSCTT-----CTTCEE-ECCCCTTTBSGGGCCCCSCBGGGTBCSSCCCBCTTEETTTTCEECTTE
T ss_pred CCCcccccCcccccCCCCCC-----CCCCCc-CCCCCCCCCCCCccccCCCCCCcCCCCCccCCCCCCCCCcccCCCCCC
Confidence 67888999999887433211 112232 56665544321 1234446889999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCccCCCCCCCCCC--CCCCCCCCccccCCCcccCCCCcCCCCCCCCC--CCCCCCCCCccCCCCC
Q psy11285 73 WGLSKISSYAPDIDGCLKCGCSQFGSVR--EDCEQMTGRCVCKPGVKGSKCNECLDPNKKLG--PNGCMPGMEVKPCNGE 148 (189)
Q Consensus 73 ~g~~~~~~~~~~~~~C~~C~C~~~gs~~--~~C~~~tG~C~C~~g~~G~~C~~C~~g~~~~~--~~~C~~~~~~~~C~~~ 148 (189)
||.... ....|.+|.|++.++.. ..|+..+|+|.|++||+|.+|++|.+|||++. ..+|+ .+.|+..
T Consensus 428 ~G~~c~-----~~~~C~~C~C~~~gtc~~~~~Cd~~tg~C~C~~g~~G~~Ce~C~~G~~g~~~~~~~C~----~C~C~~~ 498 (525)
T 4aqs_A 428 YDLSAE-----DPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCR----PCDCDLG 498 (525)
T ss_dssp ECCCTT-----STTSSEECCCCTTTBCCSSCCBCTTTCCBCBCTTCCSTTTCC---------------------------
T ss_pred cCCCCC-----CCCCCccCCCCCCceecCCCcccCCCCEEECCCCCcCCCcccCCCCccCCCCCCCCCc----CCCCCCC
Confidence 998764 45679999999887653 57998899999999999999999999999864 34676 3455543
Q ss_pred C---CCccCCCccc
Q psy11285 149 P---PVINLQTGVE 159 (189)
Q Consensus 149 ~---~~c~~~tg~c 159 (189)
. ..|++.+|.|
T Consensus 499 gs~~~~C~~~tG~C 512 (525)
T 4aqs_A 499 GALNNSCSEDSGQC 512 (525)
T ss_dssp --------------
T ss_pred CccCCccCCCCCee
Confidence 2 2466667766
No 4
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=99.58 E-value=6.5e-16 Score=137.47 Aligned_cols=107 Identities=38% Similarity=0.971 Sum_probs=46.6
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcCCCCCCCCC--CCCCCCCCCeeecCCCccCCCCCcCCCCcccCCCCC
Q psy11285 2 GIYLKSCLDSWYGCCPDNKTLAQGPDNAGCPSTCGCNKLGST--EDACIEDTEQCKCKQGVGGLKCDRCEPGYWGLSKIS 79 (189)
Q Consensus 2 G~~C~~C~~G~~g~~~~~~~~~~g~~~~~C~~~C~C~~~g~~--~~~C~~~tG~C~C~~~~~G~~C~~C~~G~~g~~~~~ 79 (189)
|.+|++|++||||..+.. ...|. +|.|+..++. ...|+..+|+|.|+++|+|.+|++|++|||+...
T Consensus 417 G~~C~~C~~Gy~G~~c~~--------~~~C~-~C~C~~~gtc~~~~~Cd~~tg~C~C~~g~~G~~Ce~C~~G~~g~~~-- 485 (525)
T 4aqs_A 417 GERCDVCKEGFYDLSAED--------PYGCK-SCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSN-- 485 (525)
T ss_dssp TTTTCEECTTEECCCTTS--------TTSSE-ECCCCTTTBCCSSCCBCTTTCCBCBCTTCCSTTTCC------------
T ss_pred CCcccCCCCCCcCCCCCC--------CCCCc-cCCCCCCceecCCCcccCCCCEEECCCCCcCCCcccCCCCccCCCC--
Confidence 778999999999975431 23576 8899888764 3478888999999999999999999999999753
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCCCCCCCccccCCCcccCCCCc
Q psy11285 80 SYAPDIDGCLKCGCSQFGSVREDCEQMTGRCVCKPGVKGSKCNE 123 (189)
Q Consensus 80 ~~~~~~~~C~~C~C~~~gs~~~~C~~~tG~C~C~~g~~G~~C~~ 123 (189)
....|++|.|++.++....|+..+|+|.|++||+|++|++
T Consensus 486 ----~~~~C~~C~C~~~gs~~~~C~~~tG~C~C~~G~~G~~Ceq 525 (525)
T 4aqs_A 486 ----DLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCNE 525 (525)
T ss_dssp --------------------------------------------
T ss_pred ----CCCCCcCCCCCCCCccCCccCCCCCeeECCCCCcCCCCCC
Confidence 3567999999999988888999999999999999999985
No 5
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=99.52 E-value=3e-15 Score=128.04 Aligned_cols=104 Identities=26% Similarity=0.562 Sum_probs=81.6
Q ss_pred cCCCCCCCCCCCCCCCCCCeeecCCCccCCCCCcCCCCcccCCCCCCCCCCCCCCccCCCCCCCCCC------CCCCCCC
Q psy11285 34 TCGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDRCEPGYWGLSKISSYAPDIDGCLKCGCSQFGSVR------EDCEQMT 107 (189)
Q Consensus 34 ~C~C~~~g~~~~~C~~~tG~C~C~~~~~G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~C~~~gs~~------~~C~~~t 107 (189)
.|.|++|++....++...+.|.|++||+|.+|++|.+|||+.+...........|++|+|+..++.- ..|+..+
T Consensus 254 ~C~Cngh~s~c~~~~~~~~~C~C~~nt~G~~Ce~C~~gy~~~p~~~g~~~~~~~C~~C~Cn~~g~~C~~d~~~~~c~~~~ 333 (375)
T 4aqt_A 254 RCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHG 333 (375)
T ss_dssp EECCTTSCSCEEECTTSCEEECCCTTEESTTSCEECTTCCSSCCCCCCSSCCCCCCCCCGGGSCSCEEECHHHHHHSSCC
T ss_pred eecCCCCCcccCCCCCCCeeeeCcCCCcCCCcccCCCCCcCCCCCCCccCCCCCCCCCcCcCCCCCcccccccCccCCCC
Confidence 5899999865444555567789999999999999999999987643322346679999999877531 1345668
Q ss_pred Ccc-ccCCCcccCCCCcCCCCCCCCCC-CCCC
Q psy11285 108 GRC-VCKPGVKGSKCNECLDPNKKLGP-NGCM 137 (189)
Q Consensus 108 G~C-~C~~g~~G~~C~~C~~g~~~~~~-~~C~ 137 (189)
|+| .|++|++|.+|++|++|||+++. .+|+
T Consensus 334 G~C~~C~~n~~G~~Ce~C~~Gyyg~~~~~~C~ 365 (375)
T 4aqt_A 334 GHCTNCRDNTDGAKCERCRENFFRLGNTEACS 365 (375)
T ss_dssp EEECSCTTTEESTTSCEECSSEECCTTCSSCE
T ss_pred CCCCCCCCCCcCCCCCCCCcCcccCcCCCCCc
Confidence 999 59999999999999999999753 3565
No 6
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=99.51 E-value=1.4e-14 Score=125.94 Aligned_cols=128 Identities=28% Similarity=0.518 Sum_probs=91.7
Q ss_pred CCCCCCccCCCCCCCCCCCCCCCCCCCcC-CCCCCCCCCCCCCCCCCeeecCCCccCCCCCc-CCCCcccCCCCCCCCCC
Q psy11285 7 SCLDSWYGCCPDNKTLAQGPDNAGCPSTC-GCNKLGSTEDACIEDTEQCKCKQGVGGLKCDR-CEPGYWGLSKISSYAPD 84 (189)
Q Consensus 7 ~C~~G~~g~~~~~~~~~~g~~~~~C~~~C-~C~~~g~~~~~C~~~tG~C~C~~~~~G~~C~~-C~~G~~g~~~~~~~~~~ 84 (189)
.|.+||+|+.| ...| +|.+++ .|+..+++|.|+++|+|.+|+. |.++|||..+.
T Consensus 188 ~C~~g~~G~~C--------------~~~C~~C~~~G----~C~~~~g~C~C~~G~~G~~Ce~~C~~g~~g~~C~------ 243 (423)
T 2gy5_A 188 RCEAQKWGPEC--------------NHLCTACMNNG----VCHEDTGECICPPGFMGRTCEKACELHTFGRTCK------ 243 (423)
T ss_dssp SSCTTEESTTS--------------CEECCCCCTTC----EECTTTCCEECCTTEESTTSCEECCTTEESTTSC------
T ss_pred cCCCCCCCCCC--------------CCCCCCCCCCC----EEECCCCcEeCCCCccCCCcccccCCCCCCCCcC------
Confidence 57788888644 3334 365654 6887789999999999999997 99999998643
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCccccCCCcccCCCCc-CCCCCCCCCCCCCCCCCCccCCCCCCCCccCCCccccCCC
Q psy11285 85 IDGCLKCGCSQFGSVREDCEQMTGRCVCKPGVKGSKCNE-CLDPNKKLGPNGCMPGMEVKPCNGEPPVINLQTGVELDCG 163 (189)
Q Consensus 85 ~~~C~~C~C~~~gs~~~~C~~~tG~C~C~~g~~G~~C~~-C~~g~~~~~~~~C~~~~~~~~C~~~~~~c~~~tg~c~~C~ 163 (189)
.+|.++..-...+.|+..+++|.|++||+|..|+. |.+||++ ..|. ..++|..+ ..|+..++ |. |.
T Consensus 244 ----~~C~~~~~C~~~g~C~~~~~~C~C~~G~~G~~C~~~C~~G~~G---~~C~---~~C~C~ng-g~C~~~~~-C~-C~ 310 (423)
T 2gy5_A 244 ----ERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYG---PDCK---LRCSCNNG-EMCDRFQG-CL-CS 310 (423)
T ss_dssp ----EECCSTTTTTTCCEEETTTTEEECCBTCBSGGGCBCCCTTBCS---BTTC---CBCCCTTC-CEEETTTE-EE-CC
T ss_pred ----ccCCCCCCCCCCCEECCCCCeEEeCCCcccccccCccCCCCcC---Cccc---ccccCCCC-CEecCCCc-eE-CC
Confidence 24554333222346877789999999999999997 9999998 4565 23456643 35776654 53 53
Q ss_pred ---CCCCCCCC
Q psy11285 164 ---SGANREDC 171 (189)
Q Consensus 164 ---~G~~C~~C 171 (189)
.|.+|+.+
T Consensus 311 ~G~~G~~Ce~~ 321 (423)
T 2gy5_A 311 PGWQGLQCERE 321 (423)
T ss_dssp TTCBSTTSCBC
T ss_pred CCCcCCCCccC
Confidence 67888765
No 7
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=99.49 E-value=2.2e-14 Score=123.42 Aligned_cols=96 Identities=25% Similarity=0.574 Sum_probs=74.3
Q ss_pred cCCCCCCCCCCCCCCC------CCCeeecCCCccCCCCCcCCCCcccCCCCCCCCCCCCCCccCCCCCCCCCC-------
Q psy11285 34 TCGCNKLGSTEDACIE------DTEQCKCKQGVGGLKCDRCEPGYWGLSKISSYAPDIDGCLKCGCSQFGSVR------- 100 (189)
Q Consensus 34 ~C~C~~~g~~~~~C~~------~tG~C~C~~~~~G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~C~~~gs~~------- 100 (189)
+|.|++|+. .|+. .+|+|.|++|++|.+||+|++|||+.+..+........|++|.|+.+++.-
T Consensus 265 ~C~CnGHA~---~C~~~~~~~~~~g~C~C~hnT~G~~CErC~pGy~g~p~~~at~~~~~~C~pC~Cnghs~~C~~d~~~~ 341 (403)
T 2y38_A 265 RCVCHGHAD---VCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVD 341 (403)
T ss_dssp ECCCTTBCS---CEEESCTTSTTCEEECCCTTEESSSCCEECTTCCSSCCCCCCSSCCCCCCCCCCTTSCSCEEECHHHH
T ss_pred ccccCCCcc---ccCCCCCCCccceEeECcCcCcCCCCCCCCccccCCcccccccCCCccccccccCCCCcccccCcccc
Confidence 699999974 4643 357899999999999999999999986432212245679999999876420
Q ss_pred --------CCCCCCCCccc-cCCCcccCCCCcCCCCCCCCC
Q psy11285 101 --------EDCEQMTGRCV-CKPGVKGSKCNECLDPNKKLG 132 (189)
Q Consensus 101 --------~~C~~~tG~C~-C~~g~~G~~C~~C~~g~~~~~ 132 (189)
..+...+|+|. |+++++|.+|++|++|||+..
T Consensus 342 ~~~~s~~~~~~~~~~G~C~~C~~nt~G~~CErC~~GYyg~p 382 (403)
T 2y38_A 342 RREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAP 382 (403)
T ss_dssp HTTCCCCTTSCSCCCEEESSCCSSEESTTSCEECTTCEECT
T ss_pred cccccccccccCCCCCCCCCCcCcCcCCCCCcCCCCccCCC
Confidence 01234589995 999999999999999999965
No 8
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=99.23 E-value=4.9e-12 Score=109.88 Aligned_cols=102 Identities=26% Similarity=0.702 Sum_probs=76.4
Q ss_pred CCCCCccCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCeeecCCCccCCCCCc-CCCCcccCCCCCCCCCCCC
Q psy11285 8 CLDSWYGCCPDNKTLAQGPDNAGCPSTCGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDR-CEPGYWGLSKISSYAPDID 86 (189)
Q Consensus 8 C~~G~~g~~~~~~~~~~g~~~~~C~~~C~C~~~g~~~~~C~~~tG~C~C~~~~~G~~C~~-C~~G~~g~~~~~~~~~~~~ 86 (189)
|++||.|..|+. .+..+.++..|..+|.+++.-.....|+..+++|.|+++|+|.+|+. |.+||||+.+.
T Consensus 220 C~~G~~G~~Ce~-~C~~g~~g~~C~~~C~~~~~C~~~g~C~~~~~~C~C~~G~~G~~C~~~C~~G~~G~~C~-------- 290 (423)
T 2gy5_A 220 CPPGFMGRTCEK-ACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCK-------- 290 (423)
T ss_dssp CCTTEESTTSCE-ECCTTEESTTSCEECCSTTTTTTCCEEETTTTEEECCBTCBSGGGCBCCCTTBCSBTTC--------
T ss_pred CCCCccCCCccc-ccCCCCCCCCcCccCCCCCCCCCCCEECCCCCeEEeCCCcccccccCccCCCCcCCccc--------
Confidence 778888877652 25555555667655664443222346777789999999999999997 99999998653
Q ss_pred CCccCCCCCCCCCCCCCCCCCCccccCCCcccCCCCcCC
Q psy11285 87 GCLKCGCSQFGSVREDCEQMTGRCVCKPGVKGSKCNECL 125 (189)
Q Consensus 87 ~C~~C~C~~~gs~~~~C~~~tG~C~C~~g~~G~~C~~C~ 125 (189)
.+|.|.+.+ .|+..++ |.|++||+|.+|+++.
T Consensus 291 --~~C~C~ngg----~C~~~~~-C~C~~G~~G~~Ce~~~ 322 (423)
T 2gy5_A 291 --LRCSCNNGE----MCDRFQG-CLCSPGWQGLQCEREG 322 (423)
T ss_dssp --CBCCCTTCC----EEETTTE-EECCTTCBSTTSCBCS
T ss_pred --ccccCCCCC----EecCCCc-eECCCCCcCCCCccCc
Confidence 257787665 6987666 9999999999999863
No 9
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=99.22 E-value=8.2e-12 Score=107.42 Aligned_cols=74 Identities=20% Similarity=0.504 Sum_probs=56.9
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcCCCCCCCCCC---------------CCCCCCCCee-ecCCCccCCC
Q psy11285 1 SGIYLKSCLDSWYGCCPDNKTLAQGPDNAGCPSTCGCNKLGSTE---------------DACIEDTEQC-KCKQGVGGLK 64 (189)
Q Consensus 1 ~G~~C~~C~~G~~g~~~~~~~~~~g~~~~~C~~~C~C~~~g~~~---------------~~C~~~tG~C-~C~~~~~G~~ 64 (189)
.|.+||+|++||||.. |..+.......|+ +|+|++++..- ..+...+|+| .|++|++|.+
T Consensus 295 ~G~~CErC~pGy~g~p---~~~at~~~~~~C~-pC~Cnghs~~C~~d~~~~~~~~s~~~~~~~~~~G~C~~C~~nt~G~~ 370 (403)
T 2y38_A 295 CGGSCDRCCPGFNQQP---WKPATTDSANECQ-SCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGIN 370 (403)
T ss_dssp ESSSCCEECTTCCSSC---CCCCCSSCCCCCC-CCCCTTSCSCEEECHHHHHTTCCCCTTSCSCCCEEESSCCSSEESTT
T ss_pred cCCCCCCCCccccCCc---ccccccCCCcccc-ccccCCCCcccccCcccccccccccccccCCCCCCCCCCcCcCcCCC
Confidence 4899999999999973 2223333456897 99999987420 0123458999 5999999999
Q ss_pred CCcCCCCcccCCCC
Q psy11285 65 CDRCEPGYWGLSKI 78 (189)
Q Consensus 65 C~~C~~G~~g~~~~ 78 (189)
||+|++||||++..
T Consensus 371 CErC~~GYyg~p~~ 384 (403)
T 2y38_A 371 CERCLPGFFRAPDQ 384 (403)
T ss_dssp SCEECTTCEECTTS
T ss_pred CCcCCCCccCCCCC
Confidence 99999999999865
No 10
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.12 E-value=1.7e-11 Score=105.94 Aligned_cols=109 Identities=21% Similarity=0.509 Sum_probs=44.3
Q ss_pred cCCCCCCCCCCCCCCCCC--CeeecCCCccCCCCCcCCCCcccCCCCCCC-----CCCCCCCccCCCCCCCCCCCCCCCC
Q psy11285 34 TCGCNKLGSTEDACIEDT--EQCKCKQGVGGLKCDRCEPGYWGLSKISSY-----APDIDGCLKCGCSQFGSVREDCEQM 106 (189)
Q Consensus 34 ~C~C~~~g~~~~~C~~~t--G~C~C~~~~~G~~C~~C~~G~~g~~~~~~~-----~~~~~~C~~C~C~~~gs~~~~C~~~ 106 (189)
+|.|++|++ .|+..+ ++|.|+++|+|.+||+|.++||+.+..... ......|++|.|+..+. .|+..
T Consensus 296 ~C~CnGHas---~C~~~~g~~~C~C~~~ttG~~CE~C~pgy~~~P~~~gt~~p~~~g~~~~C~pC~Cn~~g~---~CD~~ 369 (426)
T 3zyj_B 296 RCKCNLHAT---VCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTN---VCDNE 369 (426)
T ss_dssp EECCSSSCS---CEEEETTEEEECCCTTEESSSSCEECTTCCSSCCCCCBCCSSSSCBCCCCCCCCC-------------
T ss_pred cCcCCCchh---hcCCCCCCceeeCCCCCcCCCccccccccccCcccCCcccccCCCCCCcccCCCCCCCcC---ccccC
Confidence 799999975 676654 499999999999999999999987654210 11355699999987653 69988
Q ss_pred CCccc----cCCCcccCCCCcCCCCCCCCCCCCCCCCCCccCCCCCCCCccCCCcccc
Q psy11285 107 TGRCV----CKPGVKGSKCNECLDPNKKLGPNGCMPGMEVKPCNGEPPVINLQTGVEL 160 (189)
Q Consensus 107 tG~C~----C~~g~~G~~C~~C~~g~~~~~~~~C~~~~~~~~C~~~~~~c~~~tg~c~ 160 (189)
++.|. |+.++ +| +|++||+|.. |+ .+.|+. ...|+..+|.|.
T Consensus 370 t~~C~ngg~C~~~~---~C-~C~~G~~G~~---Ce----~c~C~~-~g~C~~~~Gqc~ 415 (426)
T 3zyj_B 370 LLHCQNGGTCHNNV---RC-LCPAAYTGIL---CE----KLRCEE-AGSCGSDSGQGA 415 (426)
T ss_dssp ----------------------------------------------------------
T ss_pred cccCCCCCCcCCCC---CC-cCCCCCcCCC---Cc----CCCCCC-CCcccCCCCccC
Confidence 88886 88877 88 8999999943 65 345664 345889999884
No 11
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=99.08 E-value=3.9e-11 Score=102.58 Aligned_cols=83 Identities=20% Similarity=0.528 Sum_probs=62.0
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcCCCCCCCCCC------CCCCCCCCee-ecCCCccCCCCCcCCCCcc
Q psy11285 1 SGIYLKSCLDSWYGCCPDNKTLAQGPDNAGCPSTCGCNKLGSTE------DACIEDTEQC-KCKQGVGGLKCDRCEPGYW 73 (189)
Q Consensus 1 ~G~~C~~C~~G~~g~~~~~~~~~~g~~~~~C~~~C~C~~~g~~~------~~C~~~tG~C-~C~~~~~G~~C~~C~~G~~ 73 (189)
.|.+||+|++|||+..+.. ........|. +|+|+.+++.- ..|+..+|+| .|++||+|.+||+|++|||
T Consensus 281 ~G~~Ce~C~~gy~~~p~~~---g~~~~~~~C~-~C~Cn~~g~~C~~d~~~~~c~~~~G~C~~C~~n~~G~~Ce~C~~Gyy 356 (375)
T 4aqt_A 281 YGVDCEKCLPFFNDRPWRR---ATAESASECL-PCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFF 356 (375)
T ss_dssp ESTTSCEECTTCCSSCCCC---CCSSCCCCCC-CCCGGGSCSCEEECHHHHHHSSCCEEECSCTTTEESTTSCEECSSEE
T ss_pred cCCCcccCCCCCcCCCCCC---CccCCCCCCC-CCcCcCCCCCcccccccCccCCCCCCCCCCCCCCcCCCCCCCCcCcc
Confidence 4899999999999985432 2223456797 99999987531 1345678999 6999999999999999999
Q ss_pred cCCCCCCCCCCCCCCccCCCC
Q psy11285 74 GLSKISSYAPDIDGCLKCGCS 94 (189)
Q Consensus 74 g~~~~~~~~~~~~~C~~C~C~ 94 (189)
+++ ....|++|.-+
T Consensus 357 g~~-------~~~~C~pCaA~ 370 (375)
T 4aqt_A 357 RLG-------NTEACSPAAAH 370 (375)
T ss_dssp CCT-------TCSSCEEC---
T ss_pred cCc-------CCCCCcCCcCc
Confidence 986 34568888654
No 12
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.63 E-value=1.1e-08 Score=88.51 Aligned_cols=93 Identities=22% Similarity=0.461 Sum_probs=23.5
Q ss_pred CCCCCCCCCCCCccCCCCCCC-C-CCCCCCCCCCCcCCCCCCCCCCCCCCCCCCeee----cCCCccCCCCCcCCCCccc
Q psy11285 1 SGIYLKSCLDSWYGCCPDNKT-L-AQGPDNAGCPSTCGCNKLGSTEDACIEDTEQCK----CKQGVGGLKCDRCEPGYWG 74 (189)
Q Consensus 1 ~G~~C~~C~~G~~g~~~~~~~-~-~~g~~~~~C~~~C~C~~~g~~~~~C~~~tG~C~----C~~~~~G~~C~~C~~G~~g 74 (189)
+|++||+|.+||++..+..-. + ........|. +|+|+.++ ..|+..++.|. |..++ +| .|++||+|
T Consensus 322 tG~~CE~C~pgy~~~P~~~gt~~p~~~g~~~~C~-pC~Cn~~g---~~CD~~t~~C~ngg~C~~~~---~C-~C~~G~~G 393 (426)
T 3zyj_B 322 TGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACI-PSISSIGT---NVCDNELLHCQNGGTCHNNV---RC-LCPAAYTG 393 (426)
T ss_dssp ESSSSCEECTTCCSSCCCCCBCCSSSSCBCCCCC-CCCC-----------------------------------------
T ss_pred cCCCccccccccccCcccCCcccccCCCCCCccc-CCCCCCCc---CccccCcccCCCCCCcCCCC---CC-cCCCCCcC
Confidence 489999999999987443111 0 0112345797 89999875 37888888886 88876 89 89999999
Q ss_pred CCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCccccCCCc
Q psy11285 75 LSKISSYAPDIDGCLKCGCSQFGSVREDCEQMTGRCVCKPGV 116 (189)
Q Consensus 75 ~~~~~~~~~~~~~C~~C~C~~~gs~~~~C~~~tG~C~C~~g~ 116 (189)
.. |..|.|++.| +|+..+|+|.-+.|.
T Consensus 394 ~~-----------Ce~c~C~~~g----~C~~~~Gqc~~~~~~ 420 (426)
T 3zyj_B 394 IL-----------CEKLRCEEAG----SCGSDSGQGAPPHGT 420 (426)
T ss_dssp ------------------------------------------
T ss_pred CC-----------CcCCCCCCCC----cccCCCCccCCCCCc
Confidence 75 6788999866 599999999765553
No 13
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Probab=98.27 E-value=5.2e-07 Score=75.62 Aligned_cols=20 Identities=35% Similarity=0.969 Sum_probs=13.6
Q ss_pred CCCCCCCeeecCCCccCCCCC
Q psy11285 46 ACIEDTEQCKCKQGVGGLKCD 66 (189)
Q Consensus 46 ~C~~~tG~C~C~~~~~G~~C~ 66 (189)
.|.. ++.|.|.++|+|.+|+
T Consensus 192 ~C~~-~~~C~C~~G~~G~~C~ 211 (324)
T 2ygq_A 192 LCVT-PGFCICPPGFYGVNCD 211 (324)
T ss_dssp EECS-SCCEECCTTCBTTTTC
T ss_pred EEcC-CCEEeCCCCccCCCcc
Confidence 4554 5677777777777775
No 14
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=98.24 E-value=2.6e-06 Score=77.97 Aligned_cols=50 Identities=24% Similarity=0.657 Sum_probs=30.8
Q ss_pred CCCCCCccCCCCCCCCCCCCCC----CCCCCcC----CCCCCCCCCCCCCCCCCeeecC----CCccCCCCC
Q psy11285 7 SCLDSWYGCCPDNKTLAQGPDN----AGCPSTC----GCNKLGSTEDACIEDTEQCKCK----QGVGGLKCD 66 (189)
Q Consensus 7 ~C~~G~~g~~~~~~~~~~g~~~----~~C~~~C----~C~~~g~~~~~C~~~tG~C~C~----~~~~G~~C~ 66 (189)
.|.+||+|..|+-. .+.+. ..|. .- .|.++| .|. .|+|.|. ++|+|.+|+
T Consensus 461 ~C~~Gy~G~~Ce~~---~~~~~~~~~~~C~-~~~~~~~Cs~~G----~C~--~g~C~C~~~~~~Gy~G~~Ce 522 (690)
T 3fcs_B 461 RCGPGWLGSQCECS---EEDYRPSQQDECS-PREGQPVCSQRG----ECL--CGQCVCHSSDFGKITGKYCE 522 (690)
T ss_dssp EECTTCCSSSSCCS---CC------CCCCS-SSSSSCGGGGSE----EEC--SSSEEECCCSSCCCBSTTSC
T ss_pred EeCCCccCCceeec---cCccCCccCCcCC-CCCCCCCCCCCC----EEE--CCeeEeecCCCCCeeCCCcC
Confidence 58999999877532 11111 2243 11 144443 565 4899999 999999986
No 15
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A
Probab=98.20 E-value=5.9e-07 Score=68.32 Aligned_cols=47 Identities=26% Similarity=0.456 Sum_probs=29.5
Q ss_pred CCCCCCCccCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCeeecCCCccCCCCCc
Q psy11285 6 KSCLDSWYGCCPDNKTLAQGPDNAGCPSTCGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDR 67 (189)
Q Consensus 6 ~~C~~G~~g~~~~~~~~~~g~~~~~C~~~C~C~~~g~~~~~C~~~tG~C~C~~~~~G~~C~~ 67 (189)
..|.+||+|+.|+. .|...-.|.++ ..|+. +++|.|.++|+|..|+.
T Consensus 19 c~C~~g~~G~~C~~----------~C~~~~~c~~~----g~C~~-~g~C~C~~G~~G~~C~~ 65 (169)
T 2vj2_A 19 VTCDDYYYGFGCNK----------FCRPRDDFFGH----YACDQ-NGNKTCMEGWMGPECNR 65 (169)
T ss_dssp --CCTTEETTTTCE----------ECCCEEETTEE----EEECS-SCCEEECTTEESTTSCE
T ss_pred eeCCCcCcCCCccc----------ccCCCCCcCCC----CEeCC-CCeeECCCCCcCCCCCC
Confidence 46889999875431 13211124443 36765 78999999999998864
No 16
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A
Probab=98.07 E-value=8.2e-07 Score=67.51 Aligned_cols=76 Identities=32% Similarity=0.857 Sum_probs=46.0
Q ss_pred CCCCCCccCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCeeecCCCccCCCCCcCCCCcccCCCCCCCCCCCC
Q psy11285 7 SCLDSWYGCCPDNKTLAQGPDNAGCPSTCGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDRCEPGYWGLSKISSYAPDID 86 (189)
Q Consensus 7 ~C~~G~~g~~~~~~~~~~g~~~~~C~~~C~C~~~g~~~~~C~~~tG~C~C~~~~~G~~C~~C~~G~~g~~~~~~~~~~~~ 86 (189)
.|.+||+|..|+. ..|...|.+. + +.|.. +++|.|+++|+|..|+.|...
T Consensus 53 ~C~~G~~G~~C~~---------~~C~~~C~~~-~----g~C~~-~~~C~C~~G~~G~~C~~C~~~--------------- 102 (169)
T 2vj2_A 53 TCMEGWMGPECNR---------AICRQGCSPK-H----GSCKL-PGDCRCQYGWQGLYCDKCIPH--------------- 102 (169)
T ss_dssp EECTTEESTTSCE---------ECCCTTCCTT-T----EECSS-TTCCEECTTEESSSSCEECCC---------------
T ss_pred ECCCCCcCCCCCC---------CCCCCCCCCC-C----cccCC-CCeeECCCCCCCCCcccCCCC---------------
Confidence 5788888875542 1243233322 2 34765 789999999999999865431
Q ss_pred CCccCCCCCCCCCCCCCCCCCCccccCCCcccCCCC
Q psy11285 87 GCLKCGCSQFGSVREDCEQMTGRCVCKPGVKGSKCN 122 (189)
Q Consensus 87 ~C~~C~C~~~gs~~~~C~~~tG~C~C~~g~~G~~C~ 122 (189)
+ .|. .+ .|. .+++|.|++||+|..|+
T Consensus 103 ---~-~C~-~g----~C~-~~~~C~C~~G~~G~~C~ 128 (169)
T 2vj2_A 103 ---P-GCV-HG----ICN-EPWQCLCETNWGGQLCD 128 (169)
T ss_dssp ---T-TCS-SE----ECS-STTCCEECTTEETTTTC
T ss_pred ---C-CCC-CC----CcC-CCCEEeCCCCCCCCccc
Confidence 0 011 11 344 26677777777777776
No 17
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=98.06 E-value=3.8e-06 Score=76.80 Aligned_cols=101 Identities=30% Similarity=0.708 Sum_probs=59.5
Q ss_pred CCCCCCccCCCCCCCCCCCCC-----CCCCCCcCC----CCCCCCCCCCCCCCCCeeecC------CCccCCCCC-----
Q psy11285 7 SCLDSWYGCCPDNKTLAQGPD-----NAGCPSTCG----CNKLGSTEDACIEDTEQCKCK------QGVGGLKCD----- 66 (189)
Q Consensus 7 ~C~~G~~g~~~~~~~~~~g~~-----~~~C~~~C~----C~~~g~~~~~C~~~tG~C~C~------~~~~G~~C~----- 66 (189)
.|.+||+|..|+- ..+.+ ...|. ..+ |.++| .|. .|+|.|. ++|+|..|+
T Consensus 449 ~C~~Gy~G~~Cec---~~~~~~~~~~~~~C~-~~~~~~~Cs~~G----~C~--~G~C~C~~~~~~~~G~~G~~Ce~~~~~ 518 (687)
T 3k6s_B 449 RCDTGYIGKNCEC---QTQGRSSQELEGSCR-KDNNSIICSGLG----DCV--CGQCLCHTSDVPGKLIYGQYCECDTIN 518 (687)
T ss_dssp EECSSEESTTSCE---ESSSCCCSGGGSTTS-SSTTSCGGGSSE----EEE--TTEEEECCCCSTTCCEESTTSCEESSC
T ss_pred EcCCCCcCCcccc---cCCcCCccccCCCCC-CCCCCCcCCCCC----EEe--CCEEEcCCCCCCCCCcccccccccccc
Confidence 5889999988761 11111 11353 222 54443 566 4789999 899998886
Q ss_pred ----------------------cCCCCcccCCCCCCCCCCCCCCccC---CCCCCCCCCCCCCCCCCccccCCCcccCCC
Q psy11285 67 ----------------------RCEPGYWGLSKISSYAPDIDGCLKC---GCSQFGSVREDCEQMTGRCVCKPGVKGSKC 121 (189)
Q Consensus 67 ----------------------~C~~G~~g~~~~~~~~~~~~~C~~C---~C~~~gs~~~~C~~~tG~C~C~~g~~G~~C 121 (189)
.|.+||+|..+.-. .....|..- .|.+.| .|.. |+|.|++||+|..|
T Consensus 519 C~~~~~~~C~~~~~G~C~~g~C~C~~G~~G~~Cec~--~~~~~C~~~~g~~Cs~~G----~C~~--g~C~C~~Gy~G~~C 590 (687)
T 3k6s_B 519 CERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCE--RTTEGCLNPRRVECSGRG----RCRC--NVCECHSGYQLPLC 590 (687)
T ss_dssp SCEETTEETSHHHHEEEETTEEEECTTCCSTTSCSC--CSSCTTBCTTCSBTSSSC----CBCS--SCBCCSTTCCTTTT
T ss_pred ccCCCCcCcCCCCCCeEECCEEEcCCCCcCCCCccC--CCCCCCCCCCCCCCCCCC----cCCC--CEEECCCCCcCCCC
Confidence 14467777655310 011223321 344443 5654 78889999999988
Q ss_pred CcCC
Q psy11285 122 NECL 125 (189)
Q Consensus 122 ~~C~ 125 (189)
++|.
T Consensus 591 e~c~ 594 (687)
T 3k6s_B 591 QECP 594 (687)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 8753
No 18
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=97.96 E-value=1.8e-05 Score=72.37 Aligned_cols=75 Identities=28% Similarity=0.774 Sum_probs=43.7
Q ss_pred CCCCCCCCCCCCCCC----CCCeeecCCCccCCCCCcCCCCcccCCCCCCCCCCCCCCccCC----CCCCCCCCCCCCCC
Q psy11285 35 CGCNKLGSTEDACIE----DTEQCKCKQGVGGLKCDRCEPGYWGLSKISSYAPDIDGCLKCG----CSQFGSVREDCEQM 106 (189)
Q Consensus 35 C~C~~~g~~~~~C~~----~tG~C~C~~~~~G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~----C~~~gs~~~~C~~~ 106 (189)
|.|......+..|+. ..|.|.|.++|+|.+|+ |..++++.... ...|.... |.+.| .|.
T Consensus 425 C~C~~~~~~s~~Cs~~G~C~~g~C~C~~Gy~G~~Ce-c~~~~~~~~~~------~~~C~~~~~~~~Cs~~G----~C~-- 491 (687)
T 3k6s_B 425 CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCE-CQTQGRSSQEL------EGSCRKDNNSIICSGLG----DCV-- 491 (687)
T ss_dssp CCCCCSSSCSSTGGGSEEESSSSEEECSSEESTTSC-EESSSCCCSGG------GSTTSSSTTSCGGGSSE----EEE--
T ss_pred ccCccCCCCCCCCCCCCEEeCCEeEcCCCCcCCccc-ccCCcCCcccc------CCCCCCCCCCCcCCCCC----EEe--
Confidence 556554322234432 15789999999999998 66666654321 11233321 33333 455
Q ss_pred CCccccC------CCcccCCCC
Q psy11285 107 TGRCVCK------PGVKGSKCN 122 (189)
Q Consensus 107 tG~C~C~------~g~~G~~C~ 122 (189)
.|+|.|. +||.|..|+
T Consensus 492 ~G~C~C~~~~~~~~G~~G~~Ce 513 (687)
T 3k6s_B 492 CGQCLCHTSDVPGKLIYGQYCE 513 (687)
T ss_dssp TTEEEECCCCSTTCCEESTTSC
T ss_pred CCEEEcCCCCCCCCCccccccc
Confidence 4677777 777777775
No 19
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Probab=97.89 E-value=1e-05 Score=67.73 Aligned_cols=20 Identities=30% Similarity=0.972 Sum_probs=16.4
Q ss_pred CCCCCCCeeecCCCccCCCCC
Q psy11285 46 ACIEDTEQCKCKQGVGGLKCD 66 (189)
Q Consensus 46 ~C~~~tG~C~C~~~~~G~~C~ 66 (189)
.|.. +++|.|+++|+|..|+
T Consensus 224 ~C~~-~~~C~C~~G~~G~~C~ 243 (324)
T 2ygq_A 224 TCFY-PGKCICPPGLEGEQCE 243 (324)
T ss_dssp CBSC-SSCBCCCTTCCTTTTC
T ss_pred eeCC-CCeeeCCCCccCCCCC
Confidence 5655 5889999999999886
No 20
>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*
Probab=97.64 E-value=3.5e-05 Score=56.13 Aligned_cols=85 Identities=27% Similarity=0.659 Sum_probs=48.0
Q ss_pred CCCCCCccCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCC--CeeecCCCccCCCCCcCCCCcccCCCCCCCCCC
Q psy11285 7 SCLDSWYGCCPDNKTLAQGPDNAGCPSTCGCNKLGSTEDACIEDT--EQCKCKQGVGGLKCDRCEPGYWGLSKISSYAPD 84 (189)
Q Consensus 7 ~C~~G~~g~~~~~~~~~~g~~~~~C~~~C~C~~~g~~~~~C~~~t--G~C~C~~~~~G~~C~~C~~G~~g~~~~~~~~~~ 84 (189)
.|++||+|..++. ....|. .-+|..++ .|.... ..|.|+++|+|..|+.=
T Consensus 31 ~C~~Gy~G~~C~~-------~~~~C~-~~~C~~~~----~C~~~~g~~~C~C~~G~~G~~C~~~---------------- 82 (135)
T 2vj3_A 31 QCLQGYTGPRCEI-------DVNECV-SNPCQNDA----TCLDQIGEFQCICMPGYEGVHCEVN---------------- 82 (135)
T ss_dssp ECCTTEESTTSCE-------ECCTTT-TCCCCSSC----EEEECSSCEEEECCTTEESSSSCEE----------------
T ss_pred ECCCCCcCCcccc-------cCccCC-CCCCCCCC----EEeCCCCCceeeCCCCCcCCcceec----------------
Confidence 5888888875541 012343 22344432 454433 47888888888887530
Q ss_pred CCCCccCCCCCCCCCCCCCCCCC--CccccCCCcccCCCCc
Q psy11285 85 IDGCLKCGCSQFGSVREDCEQMT--GRCVCKPGVKGSKCNE 123 (189)
Q Consensus 85 ~~~C~~C~C~~~gs~~~~C~~~t--G~C~C~~g~~G~~C~~ 123 (189)
.+.|..-.|.+.+ .|.... .+|.|++||+|..|+.
T Consensus 83 ~~~C~~~~C~~~g----~C~~~~g~~~C~C~~G~~G~~C~~ 119 (135)
T 2vj3_A 83 TDECASSPCLHNG----RCLDKINEFQCECPTGFTGHLCQV 119 (135)
T ss_dssp CCTTTTCCSTTTC----EEEECSSCEEEECCTTEESSSSCE
T ss_pred CCcccCCCcCCCC----EeECCCCCeEEECCCCCcCCccCc
Confidence 0112222233333 465433 3799999999988863
No 21
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=97.47 E-value=0.00013 Score=66.80 Aligned_cols=23 Identities=26% Similarity=0.755 Sum_probs=15.9
Q ss_pred CCeeecCCCccCCCCCcCCCCccc
Q psy11285 51 TEQCKCKQGVGGLKCDRCEPGYWG 74 (189)
Q Consensus 51 tG~C~C~~~~~G~~C~~C~~G~~g 74 (189)
.|.|.|.++|+|.+|+ +..++++
T Consensus 457 ~G~C~C~~Gy~G~~Ce-~~~~~~~ 479 (690)
T 3fcs_B 457 CGVCRCGPGWLGSQCE-CSEEDYR 479 (690)
T ss_dssp TTEEEECTTCCSSSSC-CSCC---
T ss_pred CCceEeCCCccCCcee-eccCccC
Confidence 5778999999999995 3444444
No 22
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Probab=97.24 E-value=0.00055 Score=49.77 Aligned_cols=53 Identities=28% Similarity=0.759 Sum_probs=32.8
Q ss_pred CCeeecCCCccCCCCCcCCCCcccCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCC--ccccCCCcccCCCCc
Q psy11285 51 TEQCKCKQGVGGLKCDRCEPGYWGLSKISSYAPDIDGCLKCGCSQFGSVREDCEQMTG--RCVCKPGVKGSKCNE 123 (189)
Q Consensus 51 tG~C~C~~~~~G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~C~~~gs~~~~C~~~tG--~C~C~~g~~G~~C~~ 123 (189)
...|.|+++|.|.+|+. ..+.|..=.|.+.+ .|....| .|.|++||+|..|+.
T Consensus 79 ~~~C~C~~G~~G~~C~~----------------~i~~C~~~~C~~~~----~C~~~~g~~~C~C~~G~~G~~c~~ 133 (143)
T 4d90_A 79 GYVCKCPRGFNGIHCQH----------------NINECEVEPCKNGG----ICTDLVANYSCECPGEFMGRNCQY 133 (143)
T ss_dssp CEEEECCTTEESTTSCE----------------ECCTTTTCCSCTTC----EEEEETTEEEEECCTTCBSTTSCB
T ss_pred CeEeECcCCCcCCCccc----------------CCCcCCCCCCCCCC----EeECCCCCeEeECCCCCccCCcee
Confidence 34788888888888752 00112211233333 4654344 699999999998876
No 23
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Probab=96.83 E-value=0.00024 Score=56.19 Aligned_cols=87 Identities=30% Similarity=0.688 Sum_probs=50.1
Q ss_pred CCCCCCccCCCCCCCCCCCCC-----CCCCCC---cCCCCCCCCCCCCCCCCCCeeecCCC------ccCCCCCc----C
Q psy11285 7 SCLDSWYGCCPDNKTLAQGPD-----NAGCPS---TCGCNKLGSTEDACIEDTEQCKCKQG------VGGLKCDR----C 68 (189)
Q Consensus 7 ~C~~G~~g~~~~~~~~~~g~~-----~~~C~~---~C~C~~~g~~~~~C~~~tG~C~C~~~------~~G~~C~~----C 68 (189)
.|.+||+|..|+- +...+ ...|.. .-.|.++ +.|. .++|.|.++ |+|..|+. |
T Consensus 110 ~C~~G~~G~~Cec---~~~~~~~~~~~~~C~~~~~~~~Csg~----G~C~--~g~C~C~~gw~~~~~~~G~~Ce~~~~~C 180 (217)
T 2p28_B 110 RCDTGYIGKNCEC---QTQGRSSQELEGSCRKDNNSIICSGL----GDCV--CGQCLCHTSDVPGKLIYGQYCECDTINC 180 (217)
T ss_dssp EECTTEESTTSCE---ECCCCC-GGGGGGGBSSTTSCBGGGT----EEEE--TTEEEECCCCSTTCCEESTTSCEESSCS
T ss_pred ECCCCccCCcccc---cCcccccccCCCcCCCCCCCCCCCCC----CEEe--CCceECCCCCCCcccEECCCcccCCccC
Confidence 4889999998762 21111 112431 1234444 3565 378999999 57777752 3
Q ss_pred CCCcccCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCccccCCCcccCCCCc
Q psy11285 69 EPGYWGLSKISSYAPDIDGCLKCGCSQFGSVREDCEQMTGRCVCKPGVKGSKCNE 123 (189)
Q Consensus 69 ~~G~~g~~~~~~~~~~~~~C~~C~C~~~gs~~~~C~~~tG~C~C~~g~~G~~C~~ 123 (189)
... .+ . .|..++ .+.|. .|+|.|.+||+|..|+.
T Consensus 181 ~~~-~g--------------~--~C~~~~--~G~C~--~g~C~C~~G~~G~~C~~ 214 (217)
T 2p28_B 181 ERY-NG--------------Q--VCGGPG--RGLCF--CGKCRCHPGFEGSACQH 214 (217)
T ss_dssp CEE-TT--------------E--ETTCTT--TEEEE--TTEEEECTTEESTTSCE
T ss_pred CCC-CC--------------C--CCCCCC--CcEEe--CCeeECCCCCccCCcCC
Confidence 210 00 1 233330 12576 48999999999999874
No 24
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=96.63 E-value=0.00034 Score=61.10 Aligned_cols=53 Identities=32% Similarity=0.825 Sum_probs=17.9
Q ss_pred CCCCCCCeeecCCCccCCCCCcCCCCcccCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCccccCCCcccCCCCc
Q psy11285 46 ACIEDTEQCKCKQGVGGLKCDRCEPGYWGLSKISSYAPDIDGCLKCGCSQFGSVREDCEQMTGRCVCKPGVKGSKCNE 123 (189)
Q Consensus 46 ~C~~~tG~C~C~~~~~G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~C~~~gs~~~~C~~~tG~C~C~~g~~G~~C~~ 123 (189)
.|.. +++|.|.++|+|..|+. .. |.+ .|.+.+ .|.. ...|.|++||+|..|+.
T Consensus 403 ~C~~-~~~C~C~~G~~G~~C~~-------~~-----------C~~-~C~~~g----~C~~-~~~C~C~~G~~G~~C~~ 455 (463)
T 2wg3_C 403 YCTP-TGKCCCSPGWEGDFCRT-------AK-----------CEP-ACRHGG----VCVR-PNKCLCKKGYLGPQCEQ 455 (463)
T ss_dssp EECT-TSCEEECTTEESTTSCE-------EC-----------C-----------------------------------
T ss_pred ccCC-CCeECCCCCcCCCcCCc-------Cc-----------CCC-CCCCCC----EECC-CCEEECCCCcccCCCCC
Confidence 5765 57999999999999863 11 333 455544 5765 47899999999999875
No 25
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B*
Probab=96.48 E-value=0.00071 Score=56.71 Aligned_cols=42 Identities=26% Similarity=0.674 Sum_probs=35.7
Q ss_pred cCCCCCCCCCCCCCCCCCC--eeecCCCccCCCCCcCCCCcccCCCC
Q psy11285 34 TCGCNKLGSTEDACIEDTE--QCKCKQGVGGLKCDRCEPGYWGLSKI 78 (189)
Q Consensus 34 ~C~C~~~g~~~~~C~~~tG--~C~C~~~~~G~~C~~C~~G~~g~~~~ 78 (189)
.|.|++|+. .|+..+| +|.|+++++|..|++|+++|++.+-.
T Consensus 269 ~C~CnGHA~---~C~~~~g~~~C~C~HnT~G~~Ce~C~p~y~~~pw~ 312 (338)
T 3tbd_A 269 RCKCNLHAN---LCSMREGSLQCECEHNTTGPDCGKCKKNFRTRSWR 312 (338)
T ss_dssp EECCTTBCS---CEEEETTEEEECCCTTEESTTSCEECTTCBSSCCC
T ss_pred cccccCCcC---ccCCCCCCceecCCCCCCCCCCcccCccccCCCCC
Confidence 689999974 6766555 69999999999999999999998754
No 26
>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*
Probab=95.86 E-value=0.0048 Score=44.53 Aligned_cols=58 Identities=31% Similarity=0.875 Sum_probs=35.2
Q ss_pred CCCCCC--CeeecCCCccCCCCCcCCCCcccCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCC--ccccCCCcccCCC
Q psy11285 46 ACIEDT--EQCKCKQGVGGLKCDRCEPGYWGLSKISSYAPDIDGCLKCGCSQFGSVREDCEQMTG--RCVCKPGVKGSKC 121 (189)
Q Consensus 46 ~C~~~t--G~C~C~~~~~G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~C~~~gs~~~~C~~~tG--~C~C~~g~~G~~C 121 (189)
.|.... ..|.|+++|+|.+|+.= .+.|..-.|.+.+ .|....| +|.|++||+|..|
T Consensus 20 ~C~~~~g~~~C~C~~Gy~G~~C~~~----------------~~~C~~~~C~~~~----~C~~~~g~~~C~C~~G~~G~~C 79 (135)
T 2vj3_A 20 KCINTLGSFECQCLQGYTGPRCEID----------------VNECVSNPCQNDA----TCLDQIGEFQCICMPGYEGVHC 79 (135)
T ss_dssp EEEECSSSEEEECCTTEESTTSCEE----------------CCTTTTCCCCSSC----EEEECSSCEEEECCTTEESSSS
T ss_pred EeECCCCCEEEECCCCCcCCccccc----------------CccCCCCCCCCCC----EEeCCCCCceeeCCCCCcCCcc
Confidence 454433 38899999998887520 1112222233332 4654333 7999999999988
Q ss_pred Cc
Q psy11285 122 NE 123 (189)
Q Consensus 122 ~~ 123 (189)
+.
T Consensus 80 ~~ 81 (135)
T 2vj3_A 80 EV 81 (135)
T ss_dssp CE
T ss_pred ee
Confidence 63
No 27
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Probab=95.50 E-value=0.0025 Score=50.20 Aligned_cols=58 Identities=29% Similarity=0.816 Sum_probs=36.5
Q ss_pred CeeecCCCccCCCCCcCCCCcccCCCCCCCCCCCCCCc----cCCCCCCCCCCCCCCCCCCccccCCC------cccCCC
Q psy11285 52 EQCKCKQGVGGLKCDRCEPGYWGLSKISSYAPDIDGCL----KCGCSQFGSVREDCEQMTGRCVCKPG------VKGSKC 121 (189)
Q Consensus 52 G~C~C~~~~~G~~C~~C~~G~~g~~~~~~~~~~~~~C~----~C~C~~~gs~~~~C~~~tG~C~C~~g------~~G~~C 121 (189)
|+|.|.++|+|.+|+ |..+.+..+.. ...|. .-.|.+.| .|. .|+|.|.++ |+|..|
T Consensus 107 g~C~C~~G~~G~~Ce-c~~~~~~~~~~------~~~C~~~~~~~~Csg~G----~C~--~g~C~C~~gw~~~~~~~G~~C 173 (217)
T 2p28_B 107 GICRCDTGYIGKNCE-CQTQGRSSQEL------EGSCRKDNNSIICSGLG----DCV--CGQCLCHTSDVPGKLIYGQYC 173 (217)
T ss_dssp TEEEECTTEESTTSC-EECCCCC-GGG------GGGGBSSTTSCBGGGTE----EEE--TTEEEECCCCSTTCCEESTTS
T ss_pred CEEECCCCccCCccc-ccCcccccccC------CCcCCCCCCCCCCCCCC----EEe--CCceECCCCCCCcccEECCCc
Confidence 789999999999998 54443321100 01122 12244433 575 589999999 589888
Q ss_pred C
Q psy11285 122 N 122 (189)
Q Consensus 122 ~ 122 (189)
+
T Consensus 174 e 174 (217)
T 2p28_B 174 E 174 (217)
T ss_dssp C
T ss_pred c
Confidence 7
No 28
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Probab=94.85 E-value=0.011 Score=39.84 Aligned_cols=16 Identities=31% Similarity=0.750 Sum_probs=13.6
Q ss_pred CccccCCCcccCCCCc
Q psy11285 108 GRCVCKPGVKGSKCNE 123 (189)
Q Consensus 108 G~C~C~~g~~G~~C~~ 123 (189)
-.|.|++||+|.+|+.
T Consensus 71 ~~C~C~~G~~G~~Ce~ 86 (91)
T 1tpg_A 71 FVCQCPEGFAGKSCEI 86 (91)
T ss_dssp EEEECCTTCBSSSCCB
T ss_pred eEeECCCCCcCCcCCc
Confidence 4699999999998874
No 29
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Probab=94.73 E-value=0.042 Score=39.53 Aligned_cols=61 Identities=23% Similarity=0.534 Sum_probs=36.3
Q ss_pred CCeeecCCCccCCCCCcCC---CCcccCCCCCCCCCCCCCCccCCCCCCCCCCCCCCC---------CCCccccCCCccc
Q psy11285 51 TEQCKCKQGVGGLKCDRCE---PGYWGLSKISSYAPDIDGCLKCGCSQFGSVREDCEQ---------MTGRCVCKPGVKG 118 (189)
Q Consensus 51 tG~C~C~~~~~G~~C~~C~---~G~~g~~~~~~~~~~~~~C~~C~C~~~gs~~~~C~~---------~tG~C~C~~g~~G 118 (189)
...|.|+++|+|..|+.-. ...... . ..+.|..-.|.+.+ .|.. ....|.|++||.|
T Consensus 22 ~~~C~C~~G~~G~~C~~~~~~~~~~~~c--~-----~~~~C~~~~C~~~g----~C~~~~~~~~~~~~~~~C~C~~G~~G 90 (143)
T 4d90_A 22 SFSCECPDGFTDPNCSSVVEVASDEEEP--T-----SAGPCTPNPCHNGG----TCEISEAYRGDTFIGYVCKCPRGFNG 90 (143)
T ss_dssp CCEEECCTTCCTTTTCSCCCCTTTTTSC--C-----CCCTTSSCCCCTTC----EEEECCCEETTEECCEEEECCTTEES
T ss_pred CEEeECCCCCCCCCCccCcccccccccc--c-----cCCcCCCCCCCCCC----EecCCCccccCCCCCeEeECcCCCcC
Confidence 3589999999999997522 111110 0 12224332344433 4542 1347999999999
Q ss_pred CCCC
Q psy11285 119 SKCN 122 (189)
Q Consensus 119 ~~C~ 122 (189)
.+|+
T Consensus 91 ~~C~ 94 (143)
T 4d90_A 91 IHCQ 94 (143)
T ss_dssp TTSC
T ss_pred CCcc
Confidence 9886
No 30
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.76 E-value=0.024 Score=49.38 Aligned_cols=44 Identities=30% Similarity=0.795 Sum_probs=28.0
Q ss_pred cCCCCcccCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCccccCCCcccCCCCc
Q psy11285 67 RCEPGYWGLSKISSYAPDIDGCLKCGCSQFGSVREDCEQMTGRCVCKPGVKGSKCNE 123 (189)
Q Consensus 67 ~C~~G~~g~~~~~~~~~~~~~C~~C~C~~~gs~~~~C~~~tG~C~C~~g~~G~~C~~ 123 (189)
.|..+|++..+. ...|.. .|.+ | .|.. ++.|.|.+||+|..|+.
T Consensus 380 ~C~~~~~g~~c~------~~~C~~-~C~n-G----~C~~-~~~C~C~~G~~G~~C~~ 423 (463)
T 2wg3_C 380 ECRATVQPAQTL------TSECSR-LCRN-G----YCTP-TGKCCCSPGWEGDFCRT 423 (463)
T ss_dssp GGCCCCCCCCCC------CCHHHH-HCCS-E----EECT-TSCEEECTTEESTTSCE
T ss_pred cCCCCCcCCCCc------cccccC-CCCC-C----ccCC-CCeECCCCCcCCCcCCc
Confidence 466666665432 122322 2443 3 5875 57999999999999974
No 31
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=92.45 E-value=0.073 Score=47.22 Aligned_cols=61 Identities=23% Similarity=0.613 Sum_probs=42.1
Q ss_pred CCCCCCCeeecCCCcc--CCCCCcCCCCcccCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCccccCCCcc
Q psy11285 46 ACIEDTEQCKCKQGVG--GLKCDRCEPGYWGLSKISSYAPDIDGCLKCGCSQFGSVREDCEQMTGRCVCKPGVK 117 (189)
Q Consensus 46 ~C~~~tG~C~C~~~~~--G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~C~~~gs~~~~C~~~tG~C~C~~g~~ 117 (189)
......|+|.|++||. +..|+.|++|||.... ....|++|.-+... -+..+..|.|..++.
T Consensus 257 ~w~~p~G~C~C~~G~e~~~~~C~aC~~g~~k~~~------~~~~C~~CP~~S~s-----~~~Gs~~C~C~ng~~ 319 (536)
T 3fl7_A 257 EWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEA------SESPCLECPEHTLP-----SPEGATSCECEEGFF 319 (536)
T ss_dssp CBCCCBCCCEECTTEEEETTEEEECCTTEECCSC------CSSCCEECCSSEEC-----CCTTCSSCEECTTCB
T ss_pred CEecccCcEeccCccccCCceeeecCCCCCcccC------CCCccccCCCCCCC-----CCCCccEEEEecccc
Confidence 3444579999999997 6678899999998753 34558887544322 222345788887775
No 32
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo sapiens} PDB: 4e4d_R
Probab=91.88 E-value=0.039 Score=41.74 Aligned_cols=51 Identities=29% Similarity=0.692 Sum_probs=29.9
Q ss_pred CCCCCcCCCCcccCCCCCCCCCCCCCCccCC--CCCCCCCCCCCCCC-CCccccCCCcc
Q psy11285 62 GLKCDRCEPGYWGLSKISSYAPDIDGCLKCG--CSQFGSVREDCEQM-TGRCVCKPGVK 117 (189)
Q Consensus 62 G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~--C~~~gs~~~~C~~~-tG~C~C~~g~~ 117 (189)
...|+.|.+|+|-.... ....|++|. |.....+...|... .-+|.|++||.
T Consensus 38 ~t~C~~C~~gty~~~~n-----~~~~C~~C~~~C~~~~~~~~~CT~tsdtvC~C~~G~~ 91 (171)
T 3urf_Z 38 KTVCAPCPDHYYTDSWH-----TSDECLYCSPVCKELQYVKQECNRTHNRVCECKEGRY 91 (171)
T ss_dssp CCEEEECCTTEECCSCB-----CCSSCEECCCCCCTTEEEEECCCSSSCCEEEECTTEE
T ss_pred CCccccCCCCcEecCCC-----CCCccccCcCccCCCCEEeccCcCCCCccccCCCCcE
Confidence 45677899998866421 235688876 55432222345543 24677888764
No 33
>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member; immune regulator, cytokine-cytokine receptor compl; HET: NAG; 3.50A {Homo sapiens}
Probab=91.21 E-value=0.2 Score=37.86 Aligned_cols=51 Identities=18% Similarity=0.325 Sum_probs=26.4
Q ss_pred CCCCCcCCCCcccCCCCCCCCCCCCCCccCC-CCCC-CC-CCCCCCCC-CCccccCCCcc
Q psy11285 62 GLKCDRCEPGYWGLSKISSYAPDIDGCLKCG-CSQF-GS-VREDCEQM-TGRCVCKPGVK 117 (189)
Q Consensus 62 G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~-C~~~-gs-~~~~C~~~-tG~C~C~~g~~ 117 (189)
...|..|.+|+|-.... ....|++|. |+.. +. +...|... .-+|.|++||.
T Consensus 36 ~t~C~pC~~gty~~~~n-----~~~~C~~C~~C~~~~g~~~~~~Ct~t~d~~C~C~~G~~ 90 (177)
T 3qd6_R 36 ETECLPCGESEFLDTWN-----RETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWH 90 (177)
T ss_dssp CCBCCBCCSSEECCSSB-----CCSSCEECCCCCGGGTEEEEECCCTTSCCEEEECTTEE
T ss_pred CCccccCCCCceecCCC-----CCCcCCCCCcCCCcCCeEEecCCcCCCCceeecCCCcE
Confidence 34677888888865421 123577664 5432 21 11234432 23566666654
No 34
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B*
Probab=90.28 E-value=0.091 Score=43.94 Aligned_cols=41 Identities=22% Similarity=0.675 Sum_probs=33.9
Q ss_pred ccCCCCCCCCCCCCCCCCCC--ccccCCCcccCCCCcCCCCCCCCC
Q psy11285 89 LKCGCSQFGSVREDCEQMTG--RCVCKPGVKGSKCNECLDPNKKLG 132 (189)
Q Consensus 89 ~~C~C~~~gs~~~~C~~~tG--~C~C~~g~~G~~C~~C~~g~~~~~ 132 (189)
..|.|+.+.+ .|...+| +|.|+.+..|..|++|.++|++..
T Consensus 268 G~C~CnGHA~---~C~~~~g~~~C~C~HnT~G~~Ce~C~p~y~~~p 310 (338)
T 3tbd_A 268 GRCKCNLHAN---LCSMREGSLQCECEHNTTGPDCGKCKKNFRTRS 310 (338)
T ss_dssp EEECCTTBCS---CEEEETTEEEECCCTTEESTTSCEECTTCBSSC
T ss_pred ccccccCCcC---ccCCCCCCceecCCCCCCCCCCcccCccccCCC
Confidence 5788987764 6876665 699999999999999999998753
No 35
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D
Probab=90.05 E-value=0.075 Score=40.34 Aligned_cols=51 Identities=20% Similarity=0.530 Sum_probs=28.6
Q ss_pred CCCCCcCCCCcccCCCCCCCCCCCCCCccCC--CCCCCCCCCCCCCC-CCccccCCCcc
Q psy11285 62 GLKCDRCEPGYWGLSKISSYAPDIDGCLKCG--CSQFGSVREDCEQM-TGRCVCKPGVK 117 (189)
Q Consensus 62 G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~--C~~~gs~~~~C~~~-tG~C~C~~g~~ 117 (189)
...|..|.+|+|-.... ....|++|. |...-.+...|... +-+|.|++||.
T Consensus 40 ~t~C~pC~~gtY~~~~n-----~~~~C~~C~~~C~~~~~~~~~Ct~tsdtvC~C~~G~~ 93 (176)
T 3k51_B 40 PTTCGPCPPRHYTQFWN-----YLERCRYCNVLCGEREEEARACHATHNRACRCRTGFF 93 (176)
T ss_dssp CCEEEECCTTEECCSCB-----CCSSCEECCCCCCSSEEEEECCBTTBCCEEEECTTEE
T ss_pred CCccccCCCCCeecCCC-----CCCcCccccCcCCCCCEEeccCcCCCCceeeccCCee
Confidence 35677889998865321 234588875 54321111235543 34677877764
No 36
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...
Probab=89.82 E-value=0.092 Score=38.07 Aligned_cols=22 Identities=23% Similarity=0.676 Sum_probs=15.3
Q ss_pred CCCCCC--CeeecCCCccCCCCCc
Q psy11285 46 ACIEDT--EQCKCKQGVGGLKCDR 67 (189)
Q Consensus 46 ~C~~~t--G~C~C~~~~~G~~C~~ 67 (189)
.|.... ..|.|+++|+|.+|+.
T Consensus 60 ~C~~~~g~y~C~C~~G~~G~~C~~ 83 (142)
T 2c4f_L 60 SCKDQLQSYICFCLPAFEGRNCET 83 (142)
T ss_dssp EEEEETTEEEEECCTTEESTTSCE
T ss_pred EEeCCCCCEEeeCCCCccCCcccc
Confidence 454433 3789999999888853
No 37
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B
Probab=89.25 E-value=0.098 Score=41.01 Aligned_cols=57 Identities=23% Similarity=0.455 Sum_probs=31.1
Q ss_pred ecCCCcc---------CCCCCcCCCCcccCCCCCCCCCCCCCCccCC-CCCC-CC-CCCCCCCC-CCccccCCCc
Q psy11285 55 KCKQGVG---------GLKCDRCEPGYWGLSKISSYAPDIDGCLKCG-CSQF-GS-VREDCEQM-TGRCVCKPGV 116 (189)
Q Consensus 55 ~C~~~~~---------G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~-C~~~-gs-~~~~C~~~-tG~C~C~~g~ 116 (189)
.|++|+. ...|..|.+|+|-.... ....|++|. |+.. +. +...|... .-+|.|++||
T Consensus 48 ~CppG~~~~~~Ct~~~~t~C~pC~~gtY~~~~n-----~~~~C~~C~~C~~~~~~~~~~~Ct~t~dtvC~C~~G~ 117 (216)
T 3me4_A 48 RCEPGKYLSSKCTPTSDSVCLPCGPDEYLDTWN-----EEDKCLLHKVCDAGKALVAVDPGNHTAPRRCACTAGY 117 (216)
T ss_dssp CBCTTEEEEECCBTTBCCEEEECCTTEECCSSB-----CCSSCEECCCCCGGGTEEEESTTCSSSCCEEEECTTE
T ss_pred CCCCCceecccCCCCCCCccccCCCCCeecCCC-----CCCcCCCCCCCCCCcCeEEEecCCCCCCccccCCCCe
Confidence 5666654 45677888888875421 134577665 5432 11 11235432 2456777765
No 38
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A
Probab=88.08 E-value=0.19 Score=41.49 Aligned_cols=51 Identities=24% Similarity=0.585 Sum_probs=29.0
Q ss_pred CCCCCcCCCCcccCCCCCCCCCCCCCCccCC--CCCCCCCCCCCCCC-CCccccCCCcc
Q psy11285 62 GLKCDRCEPGYWGLSKISSYAPDIDGCLKCG--CSQFGSVREDCEQM-TGRCVCKPGVK 117 (189)
Q Consensus 62 G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~--C~~~gs~~~~C~~~-tG~C~C~~g~~ 117 (189)
...|..|.+|+|-.... ....|++|. |...-.+...|... .-+|.|++||.
T Consensus 44 dt~C~pCp~GtYt~~~N-----~~~~C~~C~~~C~~g~~~~~~CT~TsDtvC~C~~G~y 97 (313)
T 3u3p_A 44 LRVCSSCPVGTFTRHEN-----GIEKCHDCSQPCPWPMIEKLPCAALTDRECTCPPGMF 97 (313)
T ss_dssp CCEEEECCTTEECCSCB-----CCSSCEECCCCCCTTCEEEECSBTTBCCEEECCTTEE
T ss_pred CCccccCCCCceeccCC-----CCCcCcccccccCCCCEEecCCcCCCCccccCCCCce
Confidence 45777888998866421 235688876 65322112345543 23577777764
No 39
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*
Probab=87.82 E-value=0.21 Score=45.15 Aligned_cols=15 Identities=33% Similarity=0.906 Sum_probs=12.3
Q ss_pred CccccCCCccc--CCCC
Q psy11285 108 GRCVCKPGVKG--SKCN 122 (189)
Q Consensus 108 G~C~C~~g~~G--~~C~ 122 (189)
-+|.|++||.| ..|+
T Consensus 129 Y~C~C~~Gy~GdG~~Ce 145 (634)
T 1yo8_A 129 YKCECQTGYAGDGLICG 145 (634)
T ss_dssp EEEEECTTEEESSSSEE
T ss_pred eeeeccCCccccCcccc
Confidence 37999999998 6775
No 40
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Probab=87.63 E-value=0.28 Score=27.14 Aligned_cols=22 Identities=27% Similarity=0.792 Sum_probs=15.7
Q ss_pred CCCCCCC--ccccCCCcccCCCCc
Q psy11285 102 DCEQMTG--RCVCKPGVKGSKCNE 123 (189)
Q Consensus 102 ~C~~~tG--~C~C~~g~~G~~C~~ 123 (189)
.|....+ .|.|++||+|.+|+.
T Consensus 16 ~C~~~~~~~~C~C~~G~~G~~Ce~ 39 (39)
T 1edm_B 16 SCKDDINSYECWCPFGFEGKNCEL 39 (39)
T ss_dssp EEEEETTEEEEECCTTCCSTTSCC
T ss_pred EeEcCCCceEeECCCCCcCCccCC
Confidence 4643333 699999999998863
No 41
>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Probab=87.61 E-value=0.58 Score=34.01 Aligned_cols=22 Identities=32% Similarity=0.891 Sum_probs=15.5
Q ss_pred CCCCC--CCeeecCCCccCCCCCc
Q psy11285 46 ACIED--TEQCKCKQGVGGLKCDR 67 (189)
Q Consensus 46 ~C~~~--tG~C~C~~~~~G~~C~~ 67 (189)
.|... ...|.|+++|+|.+|+.
T Consensus 61 ~C~~~~~~y~C~C~~G~~G~~C~~ 84 (146)
T 1x7a_L 61 LCKDDINSYECWCQVGFEGKNCEL 84 (146)
T ss_dssp EEEECSSCEEEECCSSEESTTTCE
T ss_pred EeECCCCCEEEecCCCCcCCcCCC
Confidence 45433 34789999999988853
No 42
>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth factor, NGF, neurotrophin, common neurotrophin receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X
Probab=87.27 E-value=0.13 Score=38.02 Aligned_cols=52 Identities=19% Similarity=0.471 Sum_probs=27.3
Q ss_pred cCCCCCcCCCC-cccCCCCCCCCCCCCCCccCC-CCCCCCCCCCCCCC-CCccccCCCcc
Q psy11285 61 GGLKCDRCEPG-YWGLSKISSYAPDIDGCLKCG-CSQFGSVREDCEQM-TGRCVCKPGVK 117 (189)
Q Consensus 61 ~G~~C~~C~~G-~~g~~~~~~~~~~~~~C~~C~-C~~~gs~~~~C~~~-tG~C~C~~g~~ 117 (189)
....|..|.+| +|-.... ....|++|. |...-.+...|... .-+|.|++|+.
T Consensus 32 ~~t~C~~C~~g~ty~~~~~-----~~~~C~~C~~C~~~~~~~~~Ct~t~d~~C~C~~G~y 86 (161)
T 1sg1_X 32 NQTVCEPCLDNVTFSDVVS-----ATEPCKPCTECLGLQSMSAPCVEADDAVCRCAYGYY 86 (161)
T ss_dssp SSCEEEECCTTTEECCSCB-----SSCCCEECCCCCTTEEEEECCBTTBCCEEEECTTEE
T ss_pred CCCcCcCCcCCCccccCCC-----CCCcCcCCCCCCCcceeecCCCcccCceeccCCCeE
Confidence 34567788887 6755321 134577775 54322222234432 24577777654
No 43
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Probab=86.78 E-value=0.15 Score=38.22 Aligned_cols=29 Identities=31% Similarity=0.863 Sum_probs=17.8
Q ss_pred CCCCCcCCCCcccCCCCCCCCCCCCCCccCC-CCC
Q psy11285 62 GLKCDRCEPGYWGLSKISSYAPDIDGCLKCG-CSQ 95 (189)
Q Consensus 62 G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~-C~~ 95 (189)
...|..|.+|+|.+... ....|++|. |+.
T Consensus 34 ~t~C~~Cp~GtY~~~~n-----~~~~C~~C~~C~~ 63 (167)
T 1jma_B 34 GTVCEPCPPGTYIAHLN-----GLSKCLQCQMCDP 63 (167)
T ss_dssp CCEEEECCTTEECSSCB-----CSSCCEECCCCCT
T ss_pred CCcCCcCCCCccccccC-----cCccccCCccccc
Confidence 45777899998876321 124577764 543
No 44
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}
Probab=86.00 E-value=0.25 Score=37.07 Aligned_cols=50 Identities=32% Similarity=0.741 Sum_probs=27.0
Q ss_pred CCCCCcCCCCcccCCCCCCCCCCCCCCccCC--CCCCCCC-CCCCCCC-CCccccCCCcc
Q psy11285 62 GLKCDRCEPGYWGLSKISSYAPDIDGCLKCG--CSQFGSV-REDCEQM-TGRCVCKPGVK 117 (189)
Q Consensus 62 G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~--C~~~gs~-~~~C~~~-tG~C~C~~g~~ 117 (189)
...|..|.+|+|-.... ....|++|. |.. +.+ ...|... .-.|.|++||.
T Consensus 40 ~t~C~~C~~gty~~~~n-----~~~~C~~C~~~C~~-g~~~~~~Ct~t~d~~C~C~~G~y 93 (173)
T 3alq_R 40 DTVCDSCEDSTYTQLWN-----WVPECLSCGSRCSS-DQVETQACTREQNRICTCRPGWY 93 (173)
T ss_dssp CCEEEECCTTEECCSSB-----CCSSCEECCCCCCT-TEEEEECCCSSSCCEEEECTTEE
T ss_pred CCcCCcCCCCccccCCC-----CCCccCCCCCcCCC-CCEEecCCCCCCCCeeECCCCeE
Confidence 35677888898876421 123577775 553 221 1234332 23567777654
No 45
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}
Probab=84.38 E-value=0.35 Score=35.22 Aligned_cols=51 Identities=16% Similarity=0.309 Sum_probs=28.7
Q ss_pred CCCCCcCCCCcccCCCCCCCCCCCCCCccCC-CCCCCCC-CCCCCCC-CCccccCCCcc
Q psy11285 62 GLKCDRCEPGYWGLSKISSYAPDIDGCLKCG-CSQFGSV-REDCEQM-TGRCVCKPGVK 117 (189)
Q Consensus 62 G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~-C~~~gs~-~~~C~~~-tG~C~C~~g~~ 117 (189)
...|+.|.+|+|-+... ....|++|. |...+.+ ...|... +-.|.|++||.
T Consensus 35 ~t~C~pC~~gty~~~~n-----~~~~C~~C~~C~~~~~~~~~~Ct~t~dtvC~C~~G~y 88 (142)
T 2uwi_A 35 DTICGHCPSDTFTSIYN-----RSPWCHSCRGPCGTNRVEVTPCTPTTNRICHCDSNSY 88 (142)
T ss_dssp CCEEEECCTTEECCSSB-----CCSSCEECCCCCCTTEEEEECCBTTBCCEEEECTTEE
T ss_pred CCccCcCCCCCCcccCC-----CCCccCCCcCcccCCeeEeecCCCCCCCEeeCCCCcE
Confidence 45677899998876421 234577775 5443222 1335442 24567777764
No 46
>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}
Probab=84.19 E-value=0.59 Score=28.38 Aligned_cols=16 Identities=25% Similarity=0.748 Sum_probs=14.4
Q ss_pred CccccCCCcccCCCCc
Q psy11285 108 GRCVCKPGVKGSKCNE 123 (189)
Q Consensus 108 G~C~C~~g~~G~~C~~ 123 (189)
-.|.|.+||+|.+|+.
T Consensus 34 y~C~C~~g~~G~~CE~ 49 (55)
T 3u7u_G 34 YLCKCPNEFTGDRCQN 49 (55)
T ss_dssp EEEEECTTEESTTSCE
T ss_pred EeEeCCCCCcCCCcCc
Confidence 3799999999999986
No 47
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Probab=83.10 E-value=0.72 Score=26.42 Aligned_cols=17 Identities=29% Similarity=0.831 Sum_probs=14.0
Q ss_pred CCeeecCCCccCCCCCc
Q psy11285 51 TEQCKCKQGVGGLKCDR 67 (189)
Q Consensus 51 tG~C~C~~~~~G~~C~~ 67 (189)
...|.|+++|+|.+|+.
T Consensus 25 ~~~C~C~~G~~G~~Ce~ 41 (45)
T 1a3p_A 25 SYTCNCVIGYSGDRCQT 41 (45)
T ss_dssp SEEEECCTTEETTTTCE
T ss_pred CEEEEcCCCCcCCcCCc
Confidence 45799999999998863
No 48
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R
Probab=83.10 E-value=0.4 Score=34.88 Aligned_cols=71 Identities=27% Similarity=0.708 Sum_probs=40.8
Q ss_pred CCCCCcCCCCcccCCCCCCCCCCCCCCccCC-CCCC-CC-CCCCCCCC-CCccccCCCcc-------cCCCCcCCCCCCC
Q psy11285 62 GLKCDRCEPGYWGLSKISSYAPDIDGCLKCG-CSQF-GS-VREDCEQM-TGRCVCKPGVK-------GSKCNECLDPNKK 130 (189)
Q Consensus 62 G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~-C~~~-gs-~~~~C~~~-tG~C~C~~g~~-------G~~C~~C~~g~~~ 130 (189)
...|..|.+|+|-... +...|++|. |+.. +. +...|... .-.|.|++||. ...|..|++|+|.
T Consensus 37 ~t~C~~C~~gty~~~~------~~~~C~~C~~C~~~~g~~~~~~Ct~t~dt~C~C~~G~y~~~g~~~~~~C~~C~~Gtfs 110 (146)
T 2hey_R 37 NTVCRPCGPGFYNDVV------SSKPCKPCTWCNLRSGSERKQLCTATQDTVCRCRAGTQPLDSYKPGVDCAPCPPGHFS 110 (146)
T ss_dssp CCEEEECCTTEECCSC------BSSCCEECCCCCGGGTEEEEECCBTTBCCEEEECTTEEESCSSSTTSSEEECCTTEEC
T ss_pred CCCcccCCCCCEECCC------CCCcCcccCCCCCCCCceEeccCccCCCccccCCCCeeeCCCcccCcccccCCCCccc
Confidence 3466778888886642 223577765 5542 21 11234432 34688998854 3467788888887
Q ss_pred CC-CCCCCC
Q psy11285 131 LG-PNGCMP 138 (189)
Q Consensus 131 ~~-~~~C~~ 138 (189)
.. ...|++
T Consensus 111 ~~~~~~C~~ 119 (146)
T 2hey_R 111 PGDNQACKP 119 (146)
T ss_dssp CSTTCCCEE
T ss_pred CCCCCCCcC
Confidence 53 234553
No 49
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=81.08 E-value=0.72 Score=40.82 Aligned_cols=35 Identities=23% Similarity=0.598 Sum_probs=26.6
Q ss_pred CCCCCCccccCCCcc--cCCCCcCCCCCCCCC--CCCCC
Q psy11285 103 CEQMTGRCVCKPGVK--GSKCNECLDPNKKLG--PNGCM 137 (189)
Q Consensus 103 C~~~tG~C~C~~g~~--G~~C~~C~~g~~~~~--~~~C~ 137 (189)
.....|+|.|++||. +..|+.|++|||... ...|+
T Consensus 258 w~~p~G~C~C~~G~e~~~~~C~aC~~g~~k~~~~~~~C~ 296 (536)
T 3fl7_A 258 WLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCL 296 (536)
T ss_dssp BCCCBCCCEECTTEEEETTEEEECCTTEECCSCCSSCCE
T ss_pred EecccCcEeccCccccCCceeeecCCCCCcccCCCCccc
Confidence 333479999999997 678889999998753 33565
No 50
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Probab=79.83 E-value=0.9 Score=26.33 Aligned_cols=17 Identities=29% Similarity=1.075 Sum_probs=14.2
Q ss_pred CCeeecCCCccCCCCCc
Q psy11285 51 TEQCKCKQGVGGLKCDR 67 (189)
Q Consensus 51 tG~C~C~~~~~G~~C~~ 67 (189)
...|.|.++|+|.+||.
T Consensus 27 ~~~C~C~~GytG~~Ce~ 43 (46)
T 1k36_A 27 QNYCRCEVGYTGVRCEH 43 (46)
T ss_dssp EEEEEECTTCSSTTSCC
T ss_pred CEEEECCCCCccCCCCc
Confidence 35799999999999874
No 51
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Probab=79.59 E-value=0.085 Score=38.91 Aligned_cols=66 Identities=18% Similarity=0.360 Sum_probs=34.0
Q ss_pred CccccCCCcc-cCCCCcCCC--------------CCCCCCC-CCCCCCCCccCCCCCCCCccCCCccccCCCCCCCCCCC
Q psy11285 108 GRCVCKPGVK-GSKCNECLD--------------PNKKLGP-NGCMPGMEVKPCNGEPPVINLQTGVELDCGSGANREDC 171 (189)
Q Consensus 108 G~C~C~~g~~-G~~C~~C~~--------------g~~~~~~-~~C~~~~~~~~C~~~~~~c~~~tg~c~~C~~G~~C~~C 171 (189)
-.|.|++||. |..|+.|.. ||.+... ..|+ ++-.|...+..|.. +.|+.=..+.+| .|
T Consensus 75 ~~C~C~~G~~~~~~C~~C~~~~~~~y~C~C~~g~G~~~~~~~~~c~---dideC~~~~~~C~~--g~C~n~~gsy~C-~C 148 (162)
T 1uzk_A 75 ASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILE---DIDECQELPGLCQG--GKCINTFGSFQC-RC 148 (162)
T ss_dssp HHHHTTTCCEETTTTEECCCTTSHHHHHHCTTCTTEEECTTTCCEE---ECCHHHHCGGGGBT--SEEEECSSCEEE-EC
T ss_pred ceeeCCCCCCcCCCcccCCCCCCCCceeECCCCCCcccCCCCCccC---ccccccCCCCCcCC--CEeEcCCCCEEe-eC
Confidence 3688999988 777775542 5544321 1222 11123222223432 334321245666 79
Q ss_pred CCCCcccC
Q psy11285 172 PSDAYCHI 179 (189)
Q Consensus 172 ~~g~~g~~ 179 (189)
++||.+..
T Consensus 149 ~~Gy~g~~ 156 (162)
T 1uzk_A 149 PTGYYLNE 156 (162)
T ss_dssp CTTCCBCT
T ss_pred CCCccCCC
Confidence 99998754
No 52
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...
Probab=78.74 E-value=0.52 Score=33.97 Aligned_cols=51 Identities=25% Similarity=0.617 Sum_probs=25.5
Q ss_pred CCCCCCccCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCC---CeeecCCCcc----CCCCC
Q psy11285 7 SCLDSWYGCCPDNKTLAQGPDNAGCPSTCGCNKLGSTEDACIEDT---EQCKCKQGVG----GLKCD 66 (189)
Q Consensus 7 ~C~~G~~g~~~~~~~~~~g~~~~~C~~~C~C~~~g~~~~~C~~~t---G~C~C~~~~~----G~~C~ 66 (189)
.|++||.|..|+... ..|. .|.+.+++- ...|.... ..|.|+++|+ |.+|+
T Consensus 71 ~C~~G~~G~~C~~~~-------~~c~-~c~~~~~~C-~~~C~~~~g~~y~C~C~~Gy~l~~dG~~C~ 128 (142)
T 2c4f_L 71 FCLPAFEGRNCETHK-------DDQL-ICVNENGGC-EQYCSDHTGTKRSCRCHEGYSLLADGVSCT 128 (142)
T ss_dssp ECCTTEESTTSCEEG-------GGCC-STTTGGGGC-SSEEECCTTSCCEEECCTTEEECTTSSCEE
T ss_pred eCCCCccCCccccCc-------cccc-cccCCCCCc-cCEeECCCCCCEEEECCCCceECCCCCCCC
Confidence 588888887554200 1222 344433321 11344333 3677777776 55553
No 53
>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}
Probab=78.34 E-value=1.5 Score=26.53 Aligned_cols=17 Identities=29% Similarity=0.745 Sum_probs=15.0
Q ss_pred CCeeecCCCccCCCCCc
Q psy11285 51 TEQCKCKQGVGGLKCDR 67 (189)
Q Consensus 51 tG~C~C~~~~~G~~C~~ 67 (189)
...|.|+++|+|.+||.
T Consensus 33 ~y~C~C~~g~~G~~CE~ 49 (55)
T 3u7u_G 33 RYLCKCPNEFTGDRCQN 49 (55)
T ss_dssp CEEEEECTTEESTTSCE
T ss_pred CEeEeCCCCCcCCCcCc
Confidence 45899999999999985
No 54
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Probab=78.18 E-value=2.4 Score=25.06 Aligned_cols=23 Identities=26% Similarity=0.839 Sum_probs=17.0
Q ss_pred CCeeecCCCccCCCCCcCCCCcc
Q psy11285 51 TEQCKCKQGVGGLKCDRCEPGYW 73 (189)
Q Consensus 51 tG~C~C~~~~~G~~C~~C~~G~~ 73 (189)
...|.|+++|+|.+|+.=..-||
T Consensus 28 ~~~C~C~~G~~G~~Ce~~~~~~~ 50 (53)
T 1egf_A 28 SYTCNCVIGYSGDRCQTRDLRWW 50 (53)
T ss_dssp CEEEECCTTCCSSSSCCCSCCCC
T ss_pred CEEEECCCCCcCCcCCccCcccc
Confidence 45799999999999976333343
No 55
>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Probab=77.26 E-value=2.8 Score=30.29 Aligned_cols=22 Identities=27% Similarity=0.786 Sum_probs=16.3
Q ss_pred CCCCCCC--ccccCCCcccCCCCc
Q psy11285 102 DCEQMTG--RCVCKPGVKGSKCNE 123 (189)
Q Consensus 102 ~C~~~tG--~C~C~~g~~G~~C~~ 123 (189)
.|....+ .|.|++||+|..|+.
T Consensus 61 ~C~~~~~~y~C~C~~G~~G~~C~~ 84 (146)
T 1x7a_L 61 LCKDDINSYECWCQVGFEGKNCEL 84 (146)
T ss_dssp EEEECSSCEEEECCSSEESTTTCE
T ss_pred EeECCCCCEEEecCCCCcCCcCCC
Confidence 4644333 799999999998864
No 56
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Probab=77.12 E-value=1.6 Score=33.40 Aligned_cols=22 Identities=27% Similarity=0.780 Sum_probs=19.4
Q ss_pred CCCCCCCCccccCCCcccCCCCc
Q psy11285 101 EDCEQMTGRCVCKPGVKGSKCNE 123 (189)
Q Consensus 101 ~~C~~~tG~C~C~~g~~G~~C~~ 123 (189)
+.|.. .++|.|++||+|..|+.
T Consensus 159 G~Cv~-P~~C~C~~Gw~G~~C~~ 180 (188)
T 2ygo_A 159 GFCNE-RRICECPDGFHGPHCEG 180 (188)
T ss_dssp CEECT-TSCEECCTTCBTTTTCB
T ss_pred CEeCC-CCcccCcCCCCCCCCcC
Confidence 36877 89999999999999986
No 57
>1skz_A Antistasin; factor XA inhibitor, serine protease inhibitor, thrombosis; 1.90A {Haementeria officinalis} SCOP: g.3.15.1 g.3.15.1
Probab=76.50 E-value=1.3 Score=31.41 Aligned_cols=87 Identities=30% Similarity=0.728 Sum_probs=49.9
Q ss_pred CCCCCcCCCCCCCCCCCCCCCCCCeeecCCCccCCCCCc-CCCCcccCCCCCCCCCCCCCCccCCCCCCCCC--------
Q psy11285 29 AGCPSTCGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDR-CEPGYWGLSKISSYAPDIDGCLKCGCSQFGSV-------- 99 (189)
Q Consensus 29 ~~C~~~C~C~~~g~~~~~C~~~tG~C~C~~~~~G~~C~~-C~~G~~g~~~~~~~~~~~~~C~~C~C~~~gs~-------- 99 (189)
.+|. .+.|... ..|+.++..|.|.. .+|.+ |..||..+. .+|..|.|......
T Consensus 6 ~~ce-~~~c~~~----~~c~~~~~~C~c~~----~~C~l~C~~Gf~~D~---------~GC~~C~C~~~p~k~~~~~~~C 67 (119)
T 1skz_A 6 PGCE-EAGCPEG----SACNIITDRCTCSG----VRCRVHCPHGFQRSR---------YGCEFCKCRLEPMKATCDISEC 67 (119)
T ss_dssp -CHH-HHCCCTT----CBCCTTTCSSCBCC----CSSCCCCTTCEEECT---------TSCEEEEECSSCCCSCCCGGGS
T ss_pred CCcC-cccCCcc----chhhhhhccccccc----CccCCcCCCcceECC---------CCCCCCCCcCCCCcCCcccccC
Confidence 4554 5666654 36777788886664 56765 888988763 56899988765221
Q ss_pred --CCCCCCCCCccccCCCcccCCCCc-CCCCCCCCCCCCCC
Q psy11285 100 --REDCEQMTGRCVCKPGVKGSKCNE-CLDPNKKLGPNGCM 137 (189)
Q Consensus 100 --~~~C~~~tG~C~C~~g~~G~~C~~-C~~g~~~~~~~~C~ 137 (189)
...|+.....|.|+. -..|.+ |+-||.- +..||.
T Consensus 68 p~g~~c~~~~~~C~C~~---~~~C~k~Cp~G~~~-De~GC~ 104 (119)
T 1skz_A 68 PEGMMCSRLTNKCDCKI---DINCRKTCPNGLKR-DKLGCE 104 (119)
T ss_dssp CTTEECCTTTSSSCEES---CCCCCCCCSSCEEE-CTTSCE
T ss_pred CccccccccccccccCC---cCcccccCCCcceE-CCCCCC
Confidence 012332333455543 234554 7766433 445776
No 58
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A
Probab=74.03 E-value=1.3 Score=31.61 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=11.3
Q ss_pred CeeecCCCccCCCCC
Q psy11285 52 EQCKCKQGVGGLKCD 66 (189)
Q Consensus 52 G~C~C~~~~~G~~C~ 66 (189)
..|.|+++|+|..++
T Consensus 68 y~C~C~~Gy~g~~~~ 82 (143)
T 2bou_A 68 YDCVCSPGYEPVSGA 82 (143)
T ss_dssp EEEEECTTEEETTCC
T ss_pred eEeECCCCcccCcCc
Confidence 478888888887664
No 59
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Probab=72.34 E-value=1.9 Score=26.24 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=15.8
Q ss_pred CeeecCCCccCCCCCc-CCCC
Q psy11285 52 EQCKCKQGVGGLKCDR-CEPG 71 (189)
Q Consensus 52 G~C~C~~~~~G~~C~~-C~~G 71 (189)
..|.|.++|+|.+||. -..+
T Consensus 33 ~~C~C~~Gf~G~~Ce~~~~~~ 53 (58)
T 3ltf_D 33 YSCECAIGFMGQRCEYKEIDN 53 (58)
T ss_dssp EEEEECTTEESSSSCEECCCC
T ss_pred EEeECCCCCccCCCcccCCCC
Confidence 4799999999999985 4443
No 60
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Probab=68.93 E-value=1.8 Score=25.66 Aligned_cols=16 Identities=38% Similarity=1.066 Sum_probs=13.4
Q ss_pred CeeecCCCccCCCCCc
Q psy11285 52 EQCKCKQGVGGLKCDR 67 (189)
Q Consensus 52 G~C~C~~~~~G~~C~~ 67 (189)
-.|+|.++|+|.+||.
T Consensus 30 ~~C~C~~gy~G~RCe~ 45 (50)
T 1iox_A 30 PSCVCDEGYIGARCER 45 (50)
T ss_dssp EEECCCTTEETTTTCE
T ss_pred eEEECCCCcccCCCCe
Confidence 3689999999999874
No 61
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=68.58 E-value=2.2 Score=25.36 Aligned_cols=17 Identities=29% Similarity=0.913 Sum_probs=13.7
Q ss_pred CCeeecCCCccCCCCCc
Q psy11285 51 TEQCKCKQGVGGLKCDR 67 (189)
Q Consensus 51 tG~C~C~~~~~G~~C~~ 67 (189)
.-.|.|.++|+|.+|+.
T Consensus 29 ~~~C~C~~gy~G~RCe~ 45 (50)
T 3e50_C 29 KPACVCHSGYVGARCEH 45 (50)
T ss_pred CeEEECCCCCcccCCCc
Confidence 34789999999998864
No 62
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Probab=68.34 E-value=2.1 Score=25.25 Aligned_cols=16 Identities=31% Similarity=0.889 Sum_probs=13.8
Q ss_pred CeeecCCCccCCCCCc
Q psy11285 52 EQCKCKQGVGGLKCDR 67 (189)
Q Consensus 52 G~C~C~~~~~G~~C~~ 67 (189)
..|.|+++|+|.+||.
T Consensus 33 y~C~C~~Gf~G~~Ce~ 48 (52)
T 3ca7_A 33 YSCECAIGFMGQRCEY 48 (52)
T ss_dssp EEEECCTTEESTTSCE
T ss_pred EEEECCCCCcCCCCcc
Confidence 4899999999999874
No 63
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=67.32 E-value=2.9 Score=24.76 Aligned_cols=16 Identities=38% Similarity=0.831 Sum_probs=13.0
Q ss_pred CeeecCCCccCCCCCc
Q psy11285 52 EQCKCKQGVGGLKCDR 67 (189)
Q Consensus 52 G~C~C~~~~~G~~C~~ 67 (189)
-.|.|.++|+|.+|+.
T Consensus 34 ~~C~C~~gy~G~RCe~ 49 (50)
T 2rnl_A 34 VTCKCQQEYFGERCGE 49 (50)
T ss_dssp EEEECCSSCCSSSCCC
T ss_pred eeEECCCCcccccccc
Confidence 3688999999998863
No 64
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Probab=67.21 E-value=4.1 Score=31.05 Aligned_cols=28 Identities=36% Similarity=0.917 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCCCCCCCeeecCCCccCCCCCcC
Q psy11285 36 GCNKLGSTEDACIEDTEQCKCKQGVGGLKCDRC 68 (189)
Q Consensus 36 ~C~~~g~~~~~C~~~tG~C~C~~~~~G~~C~~C 68 (189)
.|.++| .|.. .++|.|++||+|..|+.-
T Consensus 154 ~C~ngG----~Cv~-P~~C~C~~Gw~G~~C~~~ 181 (188)
T 2ygo_A 154 GCRNGG----FCNE-RRICECPDGFHGPHCEGT 181 (188)
T ss_dssp CCCTTC----EECT-TSCEECCTTCBTTTTCBC
T ss_pred CCCCCC----EeCC-CCcccCcCCCCCCCCcCC
Confidence 355553 6877 799999999999999763
No 65
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A
Probab=66.19 E-value=1.9 Score=26.45 Aligned_cols=17 Identities=41% Similarity=1.112 Sum_probs=14.5
Q ss_pred CCccccCCCcccCCCCc
Q psy11285 107 TGRCVCKPGVKGSKCNE 123 (189)
Q Consensus 107 tG~C~C~~g~~G~~C~~ 123 (189)
.-.|.|++||+|.+|+.
T Consensus 31 ~y~C~C~~Gf~G~~Ce~ 47 (63)
T 1hae_A 31 RYLCKCQPGFTGARCTE 47 (63)
T ss_dssp CEEEECCTTEESTTSCE
T ss_pred CEEEECCCCCcCCccCc
Confidence 34799999999999974
No 66
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Probab=65.18 E-value=2.6 Score=25.08 Aligned_cols=17 Identities=29% Similarity=0.704 Sum_probs=14.8
Q ss_pred CCeeecCCCccCCCCCc
Q psy11285 51 TEQCKCKQGVGGLKCDR 67 (189)
Q Consensus 51 tG~C~C~~~~~G~~C~~ 67 (189)
...|.|+++|+|.+|+.
T Consensus 28 ~~~C~C~~GytG~~Ce~ 44 (53)
T 1nql_B 28 KYACNCVVGYIGERCQY 44 (53)
T ss_dssp EEEEEECTTEESTTSCE
T ss_pred CEEEecCCCCcCCCCCc
Confidence 35899999999999986
No 67
>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich domain, TNF receptor, structural genomics, PSI protein structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*
Probab=64.43 E-value=2.8 Score=30.10 Aligned_cols=51 Identities=29% Similarity=0.810 Sum_probs=30.3
Q ss_pred CCCCCcCCCCcccCCCCCCCCCCCCCCccCC-CCC-CCC-CCCCCCCC-CCccccCCCcc
Q psy11285 62 GLKCDRCEPGYWGLSKISSYAPDIDGCLKCG-CSQ-FGS-VREDCEQM-TGRCVCKPGVK 117 (189)
Q Consensus 62 G~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~-C~~-~gs-~~~~C~~~-tG~C~C~~g~~ 117 (189)
...|+.|.+|+|-.... ....|++|. |+. .+. +...|... .-.|.|++||.
T Consensus 36 ~t~C~pC~~gtys~~~n-----~~~~C~~C~~C~~~~g~~~~~~CT~t~dtvC~C~~G~~ 90 (134)
T 4fhq_A 36 GTVCEPCPPGTYIAHLN-----GLSKCLQCQMCDPAMGLRASRNCSRTENAVCGCSPGHF 90 (134)
T ss_dssp CCEEEECCTTEECCSCB-----CCSSCEECCCCCGGGTEEEEECCCSSSCCEEEECTTEE
T ss_pred CCcccCCCCCCEecCCC-----CCCcCcCCCCCCccCCeEEeccCCCCCCccccCCCCCE
Confidence 45788899998876421 235577775 653 122 12345543 24688888875
No 68
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*
Probab=63.92 E-value=1.2 Score=40.88 Aligned_cols=26 Identities=42% Similarity=0.933 Sum_probs=21.7
Q ss_pred CCCCCCCCCCCCCCCCCccccCCCcccCCCCc
Q psy11285 92 GCSQFGSVREDCEQMTGRCVCKPGVKGSKCNE 123 (189)
Q Consensus 92 ~C~~~gs~~~~C~~~tG~C~C~~g~~G~~C~~ 123 (189)
.|..+| .|. .|+|.|.+||+|..|++
T Consensus 540 ~C~ghG----~C~--~G~C~Cd~G~~G~~C~~ 565 (725)
T 2e26_A 540 MCSGHG----RCV--QGSCVCDEQWGGLYCDE 565 (725)
T ss_dssp GGGGSE----EEE--TTEEEECTTEESTTSCE
T ss_pred ccCCCc----EEC--CCCEeeCCCccCCCcCc
Confidence 576666 686 59999999999999985
No 69
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*
Probab=63.56 E-value=3.1 Score=33.65 Aligned_cols=15 Identities=33% Similarity=0.977 Sum_probs=13.2
Q ss_pred CeeecCCCccCCCCC
Q psy11285 52 EQCKCKQGVGGLKCD 66 (189)
Q Consensus 52 G~C~C~~~~~G~~C~ 66 (189)
|+|.|.++|+|..|+
T Consensus 207 G~C~C~~g~~G~~Ce 221 (280)
T 2p26_A 207 GICRCDTGYIGKNCE 221 (280)
T ss_dssp TEEEECTTEESTTSC
T ss_pred CceeCCCCCcCCcce
Confidence 678899999999986
No 70
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Probab=63.00 E-value=13 Score=29.66 Aligned_cols=15 Identities=33% Similarity=0.988 Sum_probs=12.6
Q ss_pred CeeecCCCccCCCCC
Q psy11285 52 EQCKCKQGVGGLKCD 66 (189)
Q Consensus 52 G~C~C~~~~~G~~C~ 66 (189)
..|.|+++|+|.+|+
T Consensus 26 ~~C~C~~g~~g~~C~ 40 (317)
T 3h5c_B 26 YTCTCSPGYEGSNCE 40 (317)
T ss_dssp CCCCCSSSCCSSSSC
T ss_pred eEEECCCCCcCCccc
Confidence 578999999998886
No 71
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Probab=61.47 E-value=0.69 Score=35.52 Aligned_cols=21 Identities=29% Similarity=0.906 Sum_probs=0.0
Q ss_pred CCCCC--CCeeecCCCccCCCCC
Q psy11285 46 ACIED--TEQCKCKQGVGGLKCD 66 (189)
Q Consensus 46 ~C~~~--tG~C~C~~~~~G~~C~ 66 (189)
.|... ...|.|+++|+|..|+
T Consensus 55 ~C~n~~g~y~C~C~~Gf~G~~Ce 77 (195)
T 1nfu_B 55 KCKDGLGEYTCTCLEGFEGKNCE 77 (195)
T ss_dssp -----------------------
T ss_pred EeECCCCCeeEeCCCCceecccc
Confidence 45443 3478899988888875
No 72
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Probab=60.63 E-value=0.7 Score=32.96 Aligned_cols=15 Identities=33% Similarity=1.008 Sum_probs=0.0
Q ss_pred CeeecCCCccCCCCC
Q psy11285 52 EQCKCKQGVGGLKCD 66 (189)
Q Consensus 52 G~C~C~~~~~G~~C~ 66 (189)
..|.|+++|+|..|+
T Consensus 63 y~C~C~~G~~G~~C~ 77 (134)
T 2vh0_B 63 YTCTCLEGFEGKNCE 77 (134)
T ss_dssp ---------------
T ss_pred EEeeCCCCccCCccc
Confidence 478888888887774
No 73
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=58.78 E-value=3.8 Score=30.20 Aligned_cols=50 Identities=26% Similarity=0.629 Sum_probs=25.9
Q ss_pred CCCCcCCCC-cccCCCCCCCCCCCCCCccCC-CCCC-CC-CCCCCCCC-CCccccCCCcc
Q psy11285 63 LKCDRCEPG-YWGLSKISSYAPDIDGCLKCG-CSQF-GS-VREDCEQM-TGRCVCKPGVK 117 (189)
Q Consensus 63 ~~C~~C~~G-~~g~~~~~~~~~~~~~C~~C~-C~~~-gs-~~~~C~~~-tG~C~C~~g~~ 117 (189)
..|..|.+| +|-.... ....|++|. |+.. +. +...|... .-.|.|++||.
T Consensus 64 t~C~pC~~g~ty~~~~n-----~~~~C~~C~~C~~~~g~~~~~~CT~t~dtvC~C~~G~f 118 (156)
T 3tje_F 64 PDCVPCQEGKEYTDKAH-----FSSKCRRCRLCDEGHGLEVEINCTRTQNTKCRCKPNFF 118 (156)
T ss_dssp CCEEECCTTTEECSSCB-----SCSCCEECCCCCGGGTEEEEECCBTTBCCEEEECTTEE
T ss_pred CcceeCCCCCeeeccCC-----CCCcCcCCCCCCCCcceEEeccccCCCCCeeeCCCCCE
Confidence 467778888 6655321 134567665 5543 11 11235443 23577777764
No 74
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A
Probab=52.97 E-value=2 Score=31.94 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=16.2
Q ss_pred CCCCCCC--ccccCCCcccCCCCc
Q psy11285 102 DCEQMTG--RCVCKPGVKGSKCNE 123 (189)
Q Consensus 102 ~C~~~tG--~C~C~~g~~G~~C~~ 123 (189)
.|....| +|.|++||+|..+++
T Consensus 152 ~C~n~~g~y~C~C~~G~~g~~~~~ 175 (186)
T 1z1y_A 152 VCXNVEGVYXCQCMEGFTFDXEXN 175 (186)
T ss_dssp EEEEETTEEEEEECTTCEEETTTT
T ss_pred ceecCCCCeeeECCCCCccCcccc
Confidence 4654444 699999999988775
No 75
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*
Probab=52.41 E-value=2 Score=39.28 Aligned_cols=45 Identities=29% Similarity=0.640 Sum_probs=31.0
Q ss_pred CCCCCCccCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCeeecCCCccCCCCCc
Q psy11285 7 SCLDSWYGCCPDNKTLAQGPDNAGCPSTCGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDR 67 (189)
Q Consensus 7 ~C~~G~~g~~~~~~~~~~g~~~~~C~~~C~C~~~g~~~~~C~~~tG~C~C~~~~~G~~C~~ 67 (189)
.|.+||.|+.|. . +..|. ..|.+|| .|.. |+|+|.++|.|..|+.
T Consensus 521 ~C~~gw~g~dc~-----i---~~~Cp--~~C~ghG----~C~~--G~C~Cd~G~~G~~C~~ 565 (725)
T 2e26_A 521 DKQQTWAIDNVY-----I---GDGCL--DMCSGHG----RCVQ--GSCVCDEQWGGLYCDE 565 (725)
T ss_dssp CTTCCEEEEEEE-----E---ESCSS--GGGGGSE----EEET--TEEEECTTEESTTSCE
T ss_pred ccCCCccccccc-----c---cCCCC--cccCCCc----EECC--CCEeeCCCccCCCcCc
Confidence 467777776432 0 13453 3677775 6876 9999999999999973
No 76
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A
Probab=50.24 E-value=6.7 Score=25.06 Aligned_cols=14 Identities=36% Similarity=0.883 Sum_probs=9.4
Q ss_pred CeeecCCCcc--CCCC
Q psy11285 52 EQCKCKQGVG--GLKC 65 (189)
Q Consensus 52 G~C~C~~~~~--G~~C 65 (189)
..|.|+++|+ |..|
T Consensus 26 y~C~C~~Gy~~~g~~C 41 (82)
T 1emn_A 26 YRCECPFGYILAGNEC 41 (82)
T ss_dssp CCEECCTTEEEETTEE
T ss_pred EEEECCCCeECCCCcc
Confidence 4677777775 6555
No 77
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex, transferase-growth F complex; HET: NAG FUC BMA MAN; 2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
Probab=49.55 E-value=17 Score=31.67 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=18.5
Q ss_pred Cee-ecCCCccCCCCC-cCCCCcccCC
Q psy11285 52 EQC-KCKQGVGGLKCD-RCEPGYWGLS 76 (189)
Q Consensus 52 G~C-~C~~~~~G~~C~-~C~~G~~g~~ 76 (189)
..| .|++...+..|. .|++|||.++
T Consensus 222 ~~C~~C~~~~~~~~Cv~~Cp~g~y~~~ 248 (501)
T 1mox_A 222 SDCLVCRKFRDEATCKDTCPPLMLYNP 248 (501)
T ss_dssp TTEEEESSEEETTEEESSCCCSEEEET
T ss_pred cccccccccCCCCcccccCCCCeeecC
Confidence 457 788877777884 5999987664
No 78
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1
Probab=48.18 E-value=6.6 Score=25.62 Aligned_cols=16 Identities=31% Similarity=0.885 Sum_probs=12.4
Q ss_pred CeeecCCCccCCCCCc
Q psy11285 52 EQCKCKQGVGGLKCDR 67 (189)
Q Consensus 52 G~C~C~~~~~G~~C~~ 67 (189)
-.|.|.++|+|.+||.
T Consensus 62 ~~C~C~~GYtG~RCE~ 77 (79)
T 1xdt_R 62 PSCICHPGYHGERCHG 77 (79)
T ss_dssp CCEEECTTEESTTCCE
T ss_pred eEEEcCCCcccccccc
Confidence 4688888888888863
No 79
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*
Probab=47.92 E-value=7.8 Score=34.97 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCcccC
Q psy11285 164 SGANREDCPSDAYCHI 179 (189)
Q Consensus 164 ~G~~C~~C~~g~~g~~ 179 (189)
.+.+|..|++||.|..
T Consensus 68 gsY~C~~C~~Gy~G~~ 83 (634)
T 1yo8_A 68 PGFHCLPCPPRYRGNQ 83 (634)
T ss_dssp SSEEECCCCTTEEECC
T ss_pred CceecccCCCCcccCc
Confidence 4566755888887664
No 80
>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*
Probab=44.23 E-value=12 Score=25.46 Aligned_cols=22 Identities=27% Similarity=0.703 Sum_probs=16.2
Q ss_pred CCCCC--CCccccCCCcccCCCCc
Q psy11285 102 DCEQM--TGRCVCKPGVKGSKCNE 123 (189)
Q Consensus 102 ~C~~~--tG~C~C~~g~~G~~C~~ 123 (189)
+|... .-.|.|++||+|..|+.
T Consensus 27 ~C~~~~~~y~C~C~~G~~G~~C~~ 50 (114)
T 1aut_L 27 TCIDGIGSFSCDCRSGWEGRFCQR 50 (114)
T ss_dssp EECCCSSCCCEEECTTEESTTSCE
T ss_pred CCCCCCCCcEeeCCCCCcCCCcCc
Confidence 46443 24799999999998874
No 81
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Probab=41.87 E-value=6.7 Score=24.08 Aligned_cols=22 Identities=18% Similarity=0.519 Sum_probs=15.8
Q ss_pred CCCCCC--CccccCCCcc-cCCCCc
Q psy11285 102 DCEQMT--GRCVCKPGVK-GSKCNE 123 (189)
Q Consensus 102 ~C~~~t--G~C~C~~g~~-G~~C~~ 123 (189)
.|.... -.|.|++||+ |..|+.
T Consensus 26 tC~~~~g~y~C~C~~Gy~~G~~C~~ 50 (61)
T 2k2s_B 26 TCKETNSGYICRCNQGYRISLDGTG 50 (61)
T ss_dssp EEEECSSEEEEECCTTEEEEECSSS
T ss_pred ccccCCCceEeECCCCCccCCCCCC
Confidence 464333 3699999999 988864
No 82
>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A
Probab=40.93 E-value=13 Score=25.81 Aligned_cols=15 Identities=33% Similarity=0.999 Sum_probs=12.9
Q ss_pred eeecCCCccCCCCCc
Q psy11285 53 QCKCKQGVGGLKCDR 67 (189)
Q Consensus 53 ~C~C~~~~~G~~C~~ 67 (189)
.|.|+++|+|.+|+.
T Consensus 20 ~C~Cp~g~~G~~Ce~ 34 (122)
T 2fd6_A 20 WCNCPKKFGGQHCEI 34 (122)
T ss_dssp EEECCTTEESTTSCE
T ss_pred CccCCCCCCCccccc
Confidence 789999999988874
No 83
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=30.16 E-value=14 Score=30.45 Aligned_cols=16 Identities=25% Similarity=0.752 Sum_probs=11.9
Q ss_pred CccccCCCcc----cCCCCc
Q psy11285 108 GRCVCKPGVK----GSKCNE 123 (189)
Q Consensus 108 G~C~C~~g~~----G~~C~~ 123 (189)
-.|.|.+||. |..|..
T Consensus 64 ~~C~C~~g~~l~~d~~~C~~ 83 (386)
T 3v65_B 64 FQCWCEAGYELRPDRRSCKA 83 (386)
T ss_dssp CCEECCTTEEECTTSSCEEE
T ss_pred CeEEECCCceEcCCCCeECC
Confidence 4788999988 666653
No 84
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A
Probab=29.93 E-value=19 Score=25.61 Aligned_cols=14 Identities=36% Similarity=1.028 Sum_probs=7.5
Q ss_pred eeecCCCccCCCCC
Q psy11285 53 QCKCKQGVGGLKCD 66 (189)
Q Consensus 53 ~C~C~~~~~G~~C~ 66 (189)
.|.|.++|.|.+||
T Consensus 141 ~c~C~~g~~G~~Ce 154 (162)
T 1g1s_A 141 TCSCYPGFYGPECE 154 (162)
T ss_dssp EEEECTTEESTTSC
T ss_pred eEeCCCCCcCcccc
Confidence 45555555555553
No 85
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=29.14 E-value=12 Score=32.89 Aligned_cols=32 Identities=34% Similarity=0.891 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCC-----CCCccccCCCcccCCCC
Q psy11285 91 CGCSQFGSVREDCEQ-----MTGRCVCKPGVKGSKCN 122 (189)
Q Consensus 91 C~C~~~gs~~~~C~~-----~tG~C~C~~g~~G~~C~ 122 (189)
|.|......+..|+. +=|.|.|.+||.|..|+
T Consensus 457 C~C~~~~~~s~~C~~g~G~~~CG~C~C~~G~~G~~Ce 493 (503)
T 3v4v_B 457 CNCSDTQPQAPHCSDGQGHLQCGVCSCAPGRLGRLCE 493 (503)
T ss_dssp -------------------------------------
T ss_pred CCCCCCCCCCcccCCCCeeEeCCceECcCCCcCCCCC
Confidence 556432222346751 23788999999999886
No 86
>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*
Probab=29.06 E-value=29 Score=24.95 Aligned_cols=30 Identities=30% Similarity=0.988 Sum_probs=20.9
Q ss_pred cCCCCCCCCCCCCCCCC---C--CeeecCCCccCCCCCc
Q psy11285 34 TCGCNKLGSTEDACIED---T--EQCKCKQGVGGLKCDR 67 (189)
Q Consensus 34 ~C~C~~~g~~~~~C~~~---t--G~C~C~~~~~G~~C~~ 67 (189)
.|.|.+.|+ |... . ..|.|.++|.|.+|+.
T Consensus 12 ~cpC~NGGt----C~~~~~~s~~~~C~Cp~g~~G~~Cei 46 (145)
T 2i9a_A 12 NCDCLNGGT----CVSNKYFSNIHWCNCPKKFGGQHCEI 46 (145)
T ss_dssp CCCCCTTCE----EEECSSSTTCEEEECCTTEESTTSCE
T ss_pred CCCCCCCCC----cCCCccccCCccccCCCCCCCCceec
Confidence 567877763 4221 1 3799999999999963
No 87
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*
Probab=28.18 E-value=18 Score=29.15 Aligned_cols=16 Identities=38% Similarity=1.012 Sum_probs=14.0
Q ss_pred CCccccCCCcccCCCC
Q psy11285 107 TGRCVCKPGVKGSKCN 122 (189)
Q Consensus 107 tG~C~C~~g~~G~~C~ 122 (189)
-|.|.|.+||.|..|+
T Consensus 206 CG~C~C~~g~~G~~Ce 221 (280)
T 2p26_A 206 CGICRCDTGYIGKNCE 221 (280)
T ss_dssp TTEEEECTTEESTTSC
T ss_pred CCceeCCCCCcCCcce
Confidence 3678999999999997
No 88
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=25.92 E-value=45 Score=27.50 Aligned_cols=16 Identities=25% Similarity=0.802 Sum_probs=11.1
Q ss_pred CCeeecCCCcc---CCCCC
Q psy11285 51 TEQCKCKQGVG---GLKCD 66 (189)
Q Consensus 51 tG~C~C~~~~~---G~~C~ 66 (189)
...|.|++||. |..|+
T Consensus 20 ~y~C~C~~G~~~~~~~~C~ 38 (400)
T 3p5b_L 20 GYECLCPDGFQLVAQRRCE 38 (400)
T ss_dssp SEEEECCTTEEECSSSCEE
T ss_pred CeEEECCCCCCcCCCCccc
Confidence 34788888887 55553
No 89
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY crystallography, neuregulins, heparin-binding, cell CY signaling protein; HET: NAG NDG; 2.40A {Homo sapiens} PDB: 3u2p_A*
Probab=25.27 E-value=22 Score=31.77 Aligned_cols=74 Identities=22% Similarity=0.504 Sum_probs=34.2
Q ss_pred ee-ecCCCccCCCCC-cCCCCcccCCCCCCCCCCCCCCccCC--CCCCCCCCCCCCC-CCCcc-ccCCCcccCCCC-cCC
Q psy11285 53 QC-KCKQGVGGLKCD-RCEPGYWGLSKISSYAPDIDGCLKCG--CSQFGSVREDCEQ-MTGRC-VCKPGVKGSKCN-ECL 125 (189)
Q Consensus 53 ~C-~C~~~~~G~~C~-~C~~G~~g~~~~~~~~~~~~~C~~C~--C~~~gs~~~~C~~-~tG~C-~C~~g~~G~~C~-~C~ 125 (189)
+| .|+..+.+..|. .|..++|....-. ....|++|+ |........+|.. ..-+| .|+....+..|- .|+
T Consensus 495 ~C~sC~~~~~~~~Cv~~Cp~~~~~~~~~~----~~~~C~~Ch~~C~~~~~~~~tC~Gp~~~~C~~C~~~~~~~~Cv~~CP 570 (617)
T 2ahx_A 495 QCLSCRRFSRGRICIESCNLYDGEFREFE----NDSICVECDPQCEKMEDGLLTCHGPGPDNCTKCSHFKDGPNCVEKCP 570 (617)
T ss_dssp SBSSBSSEEETTEEESCCSSSSSSSCEEE----ETTEEEECCTTBCCCCTTCCSBSSSSTTSBSSBSSEEETTEEESSCC
T ss_pred hhhhccccccCCeeccccCCCcCcccccC----CCCchhhcChhhhccccCCCccCCCCCCccccCcccccCCceeccCC
Confidence 45 566544555663 4776644221000 123366654 2210000013432 12345 566555566675 588
Q ss_pred CCCCC
Q psy11285 126 DPNKK 130 (189)
Q Consensus 126 ~g~~~ 130 (189)
+|||.
T Consensus 571 ~G~~~ 575 (617)
T 2ahx_A 571 DGLQG 575 (617)
T ss_dssp EEEEB
T ss_pred CCccc
Confidence 88874
No 90
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Probab=25.10 E-value=57 Score=25.83 Aligned_cols=15 Identities=47% Similarity=1.225 Sum_probs=12.9
Q ss_pred CccccCCCcccCCCC
Q psy11285 108 GRCVCKPGVKGSKCN 122 (189)
Q Consensus 108 G~C~C~~g~~G~~C~ 122 (189)
-.|.|++||.|..|+
T Consensus 26 ~~C~C~~g~~g~~C~ 40 (317)
T 3h5c_B 26 YTCTCSPGYEGSNCE 40 (317)
T ss_dssp CCCCCSSSCCSSSSC
T ss_pred eEEECCCCCcCCccc
Confidence 479999999998886
No 91
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=24.13 E-value=19 Score=31.26 Aligned_cols=32 Identities=34% Similarity=0.902 Sum_probs=15.6
Q ss_pred CCCCCCCC-CCCCCCC-----CCCccccCCCcccCCCC
Q psy11285 91 CGCSQFGS-VREDCEQ-----MTGRCVCKPGVKGSKCN 122 (189)
Q Consensus 91 C~C~~~gs-~~~~C~~-----~tG~C~C~~g~~G~~C~ 122 (189)
|.|..... .+..|+. +=|.|.|.+||.|..|+
T Consensus 435 C~C~~~~~~~s~~C~~g~G~~~CG~C~C~~G~~G~~Ce 472 (472)
T 3t3p_B 435 CACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE 472 (472)
T ss_dssp CGGGGGCBTTCTTTTTTTEEEETTEEEECTTC------
T ss_pred CCCCCCCCCCCcccCCCCeeEeCCceECcCCCCCCCCC
Confidence 55543221 2346862 23789999999999886
No 92
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=24.06 E-value=24 Score=30.62 Aligned_cols=32 Identities=25% Similarity=0.803 Sum_probs=15.9
Q ss_pred CCCCCCCC-CCCCCCC-----CCCeeecCCCccCCCCC
Q psy11285 35 CGCNKLGS-TEDACIE-----DTEQCKCKQGVGGLKCD 66 (189)
Q Consensus 35 C~C~~~g~-~~~~C~~-----~tG~C~C~~~~~G~~C~ 66 (189)
|.|..... .+..|+. .=|.|.|.+||.|.+||
T Consensus 435 C~C~~~~~~~s~~C~~g~G~~~CG~C~C~~G~~G~~Ce 472 (472)
T 3t3p_B 435 CACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE 472 (472)
T ss_dssp CGGGGGCBTTCTTTTTTTEEEETTEEEECTTC------
T ss_pred CCCCCCCCCCCcccCCCCeeEeCCceECcCCCCCCCCC
Confidence 67754332 2346762 12688999999999886
No 93
>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R 1d4v_A
Probab=23.47 E-value=33 Score=24.08 Aligned_cols=13 Identities=23% Similarity=0.575 Sum_probs=7.8
Q ss_pred CCCCcCCCC-cccC
Q psy11285 63 LKCDRCEPG-YWGL 75 (189)
Q Consensus 63 ~~C~~C~~G-~~g~ 75 (189)
..|..|.+| +|-.
T Consensus 39 t~C~pC~~g~ty~~ 52 (130)
T 1du3_A 39 RDCISCKYGQDYST 52 (130)
T ss_dssp SCEEECCTTTEECC
T ss_pred CcCccCCCcCEEeC
Confidence 356667777 5644
No 94
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Probab=21.95 E-value=44 Score=24.18 Aligned_cols=50 Identities=28% Similarity=0.715 Sum_probs=26.3
Q ss_pred CCCCcCCCCcccCCCCCCCCCCCCCCccCC-CCC-CCCC-CCCCCCC-CCccccCCCcc
Q psy11285 63 LKCDRCEPGYWGLSKISSYAPDIDGCLKCG-CSQ-FGSV-REDCEQM-TGRCVCKPGVK 117 (189)
Q Consensus 63 ~~C~~C~~G~~g~~~~~~~~~~~~~C~~C~-C~~-~gs~-~~~C~~~-tG~C~C~~g~~ 117 (189)
..|..|.+|+|-+... ....|++|. |.. .+.+ ...|... .-.|.|++||.
T Consensus 40 t~C~~C~~gty~~~~n-----~~~~C~~C~~C~~~~~~~~~~~Ct~t~dt~C~C~~G~y 93 (162)
T 1ext_A 40 TDCRECESGSFTASEN-----HLRHCLSCSKCRKEMGQVEISSCTVDRDTVCGCRKNQY 93 (162)
T ss_dssp CEEEECCTTEECCSSB-----CCSSCEECCCCCGGGTCEEEECCBTTBCCEEECCTTEE
T ss_pred cccccCCCCccccccC-----CCCcccccCCCCCCCCEEEEecccCCCCCCccCCCCce
Confidence 4577788888876421 234577775 553 1221 1234332 23566766654
Done!