RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11285
(189 letters)
>gnl|CDD|238012 cd00055, EGF_Lam, Laminin-type epidermal growth factor-like
domain; laminins are the major noncollagenous
components of basement membranes that mediate cell
adhesion, growth migration, and differentiation; the
laminin-type epidermal growth factor-like module occurs
in tandem arrays; the domain contains 4 disulfide bonds
(loops a-d) the first three resemble epidermal growth
factor (EGF); the number of copies of this domain in
the different forms of laminins is highly variable
ranging from 3 up to 22 copies.
Length = 50
Score = 45.8 bits (109), Expect = 1e-07
Identities = 21/42 (50%), Positives = 24/42 (57%)
Query: 35 CGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDRCEPGYWGLS 76
C CN GS C T QC+CK G +CDRC PGY+GL
Sbjct: 2 CDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLP 43
Score = 37.7 bits (88), Expect = 1e-04
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 91 CGCSQFGSVREDCEQMTGRCVCKPGVKGSKCNECLD 126
C C+ GS+ C+ TG+C CKP G +C+ C
Sbjct: 2 CDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAP 37
>gnl|CDD|214543 smart00180, EGF_Lam, Laminin-type epidermal growth factor-like
domai.
Length = 46
Score = 45.0 bits (107), Expect = 3e-07
Identities = 21/42 (50%), Positives = 25/42 (59%)
Query: 35 CGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDRCEPGYWGLS 76
C C+ GS C DT QC+CK V G +CDRC PGY+G
Sbjct: 1 CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYGDG 42
Score = 38.4 bits (90), Expect = 7e-05
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 91 CGCSQFGSVREDCEQMTGRCVCKPGVKGSKCNECLDPNKKLGPNGC 136
C C GS C+ TG+C CKP V G +C+ C GP GC
Sbjct: 1 CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYGDGPPGC 46
>gnl|CDD|215680 pfam00053, Laminin_EGF, Laminin EGF-like (Domains III and V).
This family is like pfam00008 but has 8 conserved
cysteines instead of six.
Length = 49
Score = 45.0 bits (107), Expect = 3e-07
Identities = 24/43 (55%), Positives = 27/43 (62%)
Query: 35 CGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDRCEPGYWGLSK 77
C CN GS D C +T QC CK GV G CDRC+PGY+GL
Sbjct: 1 CDCNPHGSLSDTCDPETGQCLCKPGVTGRHCDRCKPGYYGLPS 43
Score = 39.3 bits (92), Expect = 5e-05
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 91 CGCSQFGSVREDCEQMTGRCVCKPGVKGSKCNECLD 126
C C+ GS+ + C+ TG+C+CKPGV G C+ C
Sbjct: 1 CDCNPHGSLSDTCDPETGQCLCKPGVTGRHCDRCKP 36
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 31.9 bits (72), Expect = 0.20
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 124 CLDPNKKLG-----PNGCMPGMEVKPCNGEPPVINLQTGVELDCGS 164
C P +K G + C PG G+PP GV L+ G+
Sbjct: 1303 CSGPTEKAGQTPQASHTCSPGQPAAHPEGQPPPEPEDPGVPLNTGA 1348
>gnl|CDD|185370 PRK15473, cbiF, cobalt-precorrin-4 C(11)-methyltransferase;
Provisional.
Length = 257
Score = 30.1 bits (68), Expect = 0.55
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 94 SQFGSVREDCEQMTGR---CVCKPGV 116
S +GS+RE E++T R PGV
Sbjct: 92 SLYGSIREQGEELTKRGIDFQVVPGV 117
>gnl|CDD|220633 pfam10214, Rrn6, RNA polymerase I-specific transcription-initiation
factor. RNA polymerase I-specific
transcription-initiation factor Rrn6 and Rrn7 represent
components of a multisubunit transcription factor
essential for the initiation of rDNA transcription by
Pol I. These proteins are found in fungi.
Length = 753
Score = 29.3 bits (66), Expect = 1.4
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 71 GYWGLSKISSYAPDIDGCLKCGCSQFGSVREDCEQMTG 108
G W + +IS + LK C GS+ D E+++
Sbjct: 166 GNWSVWEISGRSKRKSDNLKASCVASGSILFDPEELSN 203
>gnl|CDD|219366 pfam07295, DUF1451, Protein of unknown function (DUF1451). This
family consists of several hypothetical bacterial
proteins of around 160 residues in length. Members of
this family contain four highly conserved cysteine
resides toward the C-terminal region of the protein. The
function of this family is unknown.
Length = 148
Score = 27.2 bits (61), Expect = 3.2
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Query: 59 GVGGLKCDRCEPGYWGLSKISSYAPD-IDGCLKCGCSQF 96
G+G L C+ C G+ ++ Y P I C KCG ++F
Sbjct: 111 GLGTLVCENC--GH----MLTFYHPSVIPPCPKCGHTEF 143
>gnl|CDD|222348 pfam13730, HTH_36, Helix-turn-helix domain.
Length = 55
Score = 25.9 bits (58), Expect = 3.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 3 IYLKSCLDSWYGCCPDNKTLA 23
+YL S + GC P N+TLA
Sbjct: 12 LYLLSLANKDGGCFPSNETLA 32
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.139 0.488
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,586,156
Number of extensions: 701201
Number of successful extensions: 449
Number of sequences better than 10.0: 1
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 29
Length of query: 189
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 98
Effective length of database: 6,901,388
Effective search space: 676336024
Effective search space used: 676336024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)