RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11285
(189 letters)
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 79.7 bits (196), Expect = 6e-18
Identities = 41/112 (36%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 14 GCCPDNKTLAQGPDNAGCPSTCGCNKLGSTE--DACIEDTEQCKCKQGVGGLKCDRCEPG 71
C + D GC S C CN LG+ + C +T C CK+ V G +CD+C P
Sbjct: 421 DVCKEGFYDLSAEDPYGCKS-CACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQ 479
Query: 72 YWGLSKISSYAPDIDGCLKCGCSQFGSVREDCEQMTGRCVCKPGVKGSKCNE 123
+WGLS D+DGC C C G++ C + +G+C C P + G +CNE
Sbjct: 480 HWGLSN------DLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCNE 525
Score = 66.3 bits (161), Expect = 3e-13
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 10/130 (7%)
Query: 2 GIYLKSCLDSWYGCCPDNKTLAQGPDNAGCP---STCGCNKLGSTEDACIEDTEQCKCKQ 58
G + C ++ + + C S G G T+ + QC+CK
Sbjct: 354 GRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKL 413
Query: 59 GVGGLKCDRCEPGYWGLSKISSYAPDIDGCLKCGCSQFGSVR--EDCEQMTGRCVCKPGV 116
V G +CD C+ G++ LS A D GC C C+ G++ C+ TG C CK V
Sbjct: 414 HVEGERCDVCKEGFYDLS-----AEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLV 468
Query: 117 KGSKCNECLD 126
G +C++CL
Sbjct: 469 TGQRCDQCLP 478
Score = 40.8 bits (95), Expect = 1e-04
Identities = 26/131 (19%), Positives = 37/131 (28%), Gaps = 19/131 (14%)
Query: 15 CCPDNKTLAQGPDNAGCPSTCGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDRCEPGYWG 74
C L P + C +C D V G CD C+ G
Sbjct: 295 CMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMG 354
Query: 75 LS----------KISSYAPDIDGCLKCGCSQFGSVRE---------DCEQMTGRCVCKPG 115
+ D + C C C GS + G+C CK
Sbjct: 355 RNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLH 414
Query: 116 VKGSKCNECLD 126
V+G +C+ C +
Sbjct: 415 VEGERCDVCKE 425
Score = 35.4 bits (81), Expect = 0.008
Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 9/95 (9%)
Query: 41 GSTEDACIEDTEQCKCKQGVGGLKCDRCEPGYWGLSKISSYAPDIDGCLKCGCSQFGSV- 99
G E+ C C+ GL C+ C Y L + + + C KC C++ S
Sbjct: 268 GVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSC 327
Query: 100 -------REDCEQMTGRCV-CKPGVKGSKCNECLD 126
G C C+ G C +C
Sbjct: 328 HFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKP 362
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 62.9 bits (153), Expect = 5e-13
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 10/122 (8%)
Query: 8 CLDSWYGCCPDNKTLAQGPDNAGCPSTCGCNKLGSTEDACIEDTEQC-KCKQGVGGLKCD 66
C D ++G + + GP P C N + C T +C KC G CD
Sbjct: 35 CDDGYFG----DPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCD 90
Query: 67 RCEPGYWGLSKISSYAPDIDGCLKCGCSQFGSVRE--DCEQMTGRCVCKPGVKGSKCNEC 124
RC+ G++G + A D C C C+ +G+V++ C +TG+C C P V G C C
Sbjct: 91 RCKEGFFGNPLAPNPA---DKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTC 147
Query: 125 LD 126
Sbjct: 148 DP 149
Score = 42.5 bits (100), Expect = 1e-05
Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 7/111 (6%)
Query: 35 CGCNKLGSTEDACIEDT-EQCKCKQGVGGLKCDRCEPGYWGLSKISSYAPDIDGCLKCGC 93
C C S C G G +C+ C+ GY+G S+ + +C
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCND 60
Query: 94 SQFGSVREDCEQMTGRCV-CKPGVKGSKCNECL-----DPNKKLGPNGCMP 138
+ + +C ++TG C+ C G C+ C +P + C
Sbjct: 61 NIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKA 111
Score = 41.7 bits (98), Expect = 3e-05
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 23 AQGPDNAGCPSTCGCNKLGS--TEDACIEDTEQCKCKQGVGGLKCDRCEPGYWGLS 76
P+ A C CN G+ + +C T QC+C V G C C+PGY+ L
Sbjct: 100 PLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQ 155
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 54.0 bits (129), Expect = 4e-09
Identities = 28/117 (23%), Positives = 38/117 (32%), Gaps = 8/117 (6%)
Query: 30 GCPSTCGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDRCEPGYWGLSKISSYAPDIDGCL 89
C CN S D C CK G+ C++C P + + A CL
Sbjct: 250 AVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECL 309
Query: 90 KCGCSQFGSVR------EDCEQMTGRCV-CKPGVKGSKCNECLDPNKKLG-PNGCMP 138
C C+ G C C+ G+KC C + +LG C P
Sbjct: 310 PCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRLGNTEACSP 366
Score = 39.4 bits (91), Expect = 3e-04
Identities = 16/94 (17%), Positives = 22/94 (23%), Gaps = 17/94 (18%)
Query: 15 CCPDNKTLAQGPDNAGCPSTCGCNKLGSTEDACIEDTEQ----------CKCKQGVGGLK 64
C P A S C C D E C+ G K
Sbjct: 288 CLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAK 347
Query: 65 CDRCEPGYWGLSKISSYAPDIDGCLKCGCSQFGS 98
C+RC ++ L + + C
Sbjct: 348 CERCRENFFRL-------GNTEACSPAAAHHHHH 374
Score = 34.0 bits (77), Expect = 0.024
Identities = 26/156 (16%), Positives = 42/156 (26%), Gaps = 12/156 (7%)
Query: 21 TLAQGPDNAGCPSTCGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDRCEPGYWGLSKISS 80
TL P ++ + + D + V + + Y+ +S
Sbjct: 193 TLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVFN-EPKVLKSYYYAIS---- 247
Query: 81 YAPDIDGCLKCGCSQFGSVREDCEQMTGRCVCKPGVKGSKCNECL----DPNKKLGPNGC 136
D +C C+ S E C CK G C +CL D +
Sbjct: 248 ---DFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAES 304
Query: 137 MPGMEVKPCNGEPPVINLQTGVELDCGSGANREDCP 172
CNG + G G + +C
Sbjct: 305 ASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCR 340
>1skz_A Antistasin; factor XA inhibitor, serine protease inhibitor,
thrombosis; 1.90A {Haementeria officinalis} SCOP:
g.3.15.1 g.3.15.1
Length = 119
Score = 47.0 bits (111), Expect = 2e-07
Identities = 24/109 (22%), Positives = 35/109 (32%), Gaps = 8/109 (7%)
Query: 32 PSTCGCNKLGSTED-ACIEDTEQCKCKQGVGGLKCDRCEPGYWGLSKISSYAPDIDGCLK 90
P GC + G E AC T++C C G C G+ + +K
Sbjct: 3 PFGPGCEEAGCPEGSACNIITDRCTCS---GVRCRVHCPHGFQRSRYGCEFCKCRLEPMK 59
Query: 91 CGCSQFGSVRED-CEQMTGRCVCKPGVKGSKCNECLDPNKKLGPNGCMP 138
C C ++T +C CK + C + K GC
Sbjct: 60 ATCDISECPEGMMCSRLTNKCDCKIDI---NCRKTCPNGLKRDKLGCEY 105
Score = 25.8 bits (56), Expect = 5.2
Identities = 14/66 (21%), Positives = 19/66 (28%), Gaps = 12/66 (18%)
Query: 35 CGCNKLGSTEDA-CIEDTEQCKCKQGVGGLKCDRCEPGYWGLSKISSYAPDIDGCLKCGC 93
C+ E C T +C CK + C + P K GC C C
Sbjct: 60 ATCDISECPEGMMCSRLTNKCDCKIDI---NCRKTCPNGLKRDK--------LGCEYCEC 108
Query: 94 SQFGSV 99
+
Sbjct: 109 RPKRKL 114
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 42.2 bits (98), Expect = 4e-05
Identities = 24/138 (17%), Positives = 38/138 (27%), Gaps = 19/138 (13%)
Query: 8 CLDSWYGCCPDNKTLAQGPDNAGCPSTCGCNKLGS---TEDACIEDTEQCKCKQGVGGLK 64
+ + + C C+ +D QC C+ G
Sbjct: 239 LMGKALRDPTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGS 298
Query: 65 CDRCEPGYWGLSKISSYAPDIDGCLKCGCSQFGSV---------------REDCEQMTGR 109
CDRC PG+ + + C C C +++ Q G
Sbjct: 299 CDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGV 358
Query: 110 CV-CKPGVKGSKCNECLD 126
C+ C+ G C CL
Sbjct: 359 CLDCQHHTTGINCERCLP 376
Score = 37.9 bits (87), Expect = 0.001
Identities = 12/82 (14%), Positives = 21/82 (25%), Gaps = 2/82 (2%)
Query: 13 YGCCPDNKTLAQGPDNAGCPSTCGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDRCEPGY 72
C D P + ++ C+ G+ C+RC PG+
Sbjct: 319 ANECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGF 378
Query: 73 WGLSKISSYAPDIDGCLKCGCS 94
+ +P C
Sbjct: 379 FRAPDQPLDSP--HVCRPAAAH 398
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 39.8 bits (92), Expect = 2e-04
Identities = 20/104 (19%), Positives = 29/104 (27%), Gaps = 15/104 (14%)
Query: 35 CGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDRCEPGYWGLSKISSYAPDIDGCLKCGCS 94
C CN + C+C+ G C +C+ Y G I C
Sbjct: 297 CKCNLHATVCVYD-NSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACI 355
Query: 95 Q----FGSVREDCEQM----------TGRCVCKPGVKGSKCNEC 124
G+ D E + RC+C G C +
Sbjct: 356 PSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKL 399
Score = 32.1 bits (72), Expect = 0.085
Identities = 16/97 (16%), Positives = 25/97 (25%), Gaps = 15/97 (15%)
Query: 26 PDNAGCPSTCGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDRCEPGYWGLSKISSYAPDI 85
P G + C + + C + C+ C Y G
Sbjct: 345 PIPKGAANACIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTG----------- 393
Query: 86 DGCLKCGCSQFGSVREDCEQMTGRCVCKPGVKGSKCN 122
C K C + GS C +G+ G +
Sbjct: 394 ILCEKLRCEEAGS----CGSDSGQGAPPHGTHHHHHH 426
Score = 31.4 bits (70), Expect = 0.16
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 84 DIDGCLKCGCSQFGSVREDCEQMTGRCVCKPGVKGSKCNECLDP--NKKLGPNGCMPGME 141
DI +C C+ + + C C+ G C +C + P +P +
Sbjct: 290 DIKVRGRCKCNLHAT-VCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPK 348
Query: 142 VKPCN 146
Sbjct: 349 GAANA 353
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI,
LE-domain, N neuronal cell adhesion molecule, netrin G
ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens}
PDB: 3zyg_A* 3zyi_B*
Length = 338
Score = 36.1 bits (82), Expect = 0.004
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 6/75 (8%)
Query: 25 GPDNAGCPSTCGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDRCEPGYWGL-----SKIS 79
N C CN + E + QC+C+ G C +C+ + S +
Sbjct: 260 AISNIEVIGRCKCNLHANLCSMR-EGSLQCECEHNTTGPDCGKCKKNFRTRSWRAGSYLP 318
Query: 80 SYAPDIDGCLKCGCS 94
+ C G
Sbjct: 319 LPHGSPNACAAAGSH 333
Score = 26.0 bits (56), Expect = 9.9
Identities = 12/101 (11%), Positives = 26/101 (25%), Gaps = 11/101 (10%)
Query: 26 PDNAGCPSTCGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDRCEPGYWGLSKISSYAPDI 85
S G + + D + V + +I
Sbjct: 215 NLYTRLESAKGLKEFFTLTDLRMRLLRPALGGTYVQRENLYKYFYAIS----------NI 264
Query: 86 DGCLKCGCSQFGSVREDCEQMTGRCVCKPGVKGSKCNECLD 126
+ +C C+ + + + +C C+ G C +C
Sbjct: 265 EVIGRCKCNLHAN-LCSMREGSLQCECEHNTTGPDCGKCKK 304
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 34.3 bits (78), Expect = 0.015
Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 47 CIEDTEQCKCKQGVGGLKCDR-CEPGYWGLSKISSYAPDIDGCLKCGCSQFGSVREDCEQ 105
C EDT +C C G G C++ CE +G +C + C
Sbjct: 211 CHEDTGECICPPGFMGRTCEKACELHTFGR----------TCKERCSGQEGCKSYVFCLP 260
Query: 106 MTGRCVCKPGVKGSKCNECLDP 127
C C G KG +CNE P
Sbjct: 261 DPYGCSCATGWKGLQCNEACHP 282
Score = 30.4 bits (68), Expect = 0.35
Identities = 18/83 (21%), Positives = 23/83 (27%), Gaps = 13/83 (15%)
Query: 47 CIEDTEQCKCKQGVGGLKCDRCEPGYWGLSKISSYAPDIDGCLKCGCSQFGSVREDCEQM 106
L RCE WG L C G C +
Sbjct: 168 SARYIGGNLFTSAFTRLIVRRCEAQKWGPE---------CNHLCTACMNNGV----CHED 214
Query: 107 TGRCVCKPGVKGSKCNECLDPNK 129
TG C+C PG G C + + +
Sbjct: 215 TGECICPPGFMGRTCEKACELHT 237
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 31.6 bits (71), Expect = 0.14
Identities = 22/109 (20%), Positives = 30/109 (27%), Gaps = 4/109 (3%)
Query: 31 CPSTCGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDRCE--PGYWGLSKISSYAPDIDGC 88
C E +C +D C G+G C +C I + D
Sbjct: 459 CECQTQGRSSQELEGSCRKDNNSIIC-SGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTI 517
Query: 89 L-KCGCSQFGSVREDCEQMTGRCVCKPGVKGSKCNECLDPNKKLGPNGC 136
+ Q G+C C PG +GS C L P
Sbjct: 518 NCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRV 566
Score = 25.8 bits (56), Expect = 9.8
Identities = 17/91 (18%), Positives = 23/91 (25%), Gaps = 9/91 (9%)
Query: 31 CPSTCGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDRCEPGYWGLSKISSYAPDIDGCLK 90
C + C+C G G C+ G C K
Sbjct: 425 CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSS-------QELEGSCRK 477
Query: 91 CGCSQFGSVREDCEQMTGRCVCKPGVKGSKC 121
S S DC + G+C+C K
Sbjct: 478 DNNSIICSGLGDC--VCGQCLCHTSDVPGKL 506
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.48
Identities = 6/28 (21%), Positives = 10/28 (35%), Gaps = 11/28 (39%)
Query: 57 KQGVGGLKCDRCEPGYWGLSKISSYAPD 84
KQ + L+ + + YA D
Sbjct: 19 KQALKKLQ-----------ASLKLYADD 35
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 28.9 bits (64), Expect = 0.98
Identities = 23/125 (18%), Positives = 34/125 (27%), Gaps = 14/125 (11%)
Query: 5 LKSCLDSWYGCCPDNKTLAQGPDNAGCPSTCGCNKLGSTEDACIEDTEQCKCKQGVGGLK 64
++ C + C C + +C G G +
Sbjct: 403 VRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCA------CQAQAEPNSHRCNNGNGTFE 456
Query: 65 CD--RCEPGYWG----LSKISSYAPDIDGCLKCGCSQFGSVREDCEQMTGRCVCKPGVKG 118
C RC PG+ G S+ D C S R +C G+CVC G
Sbjct: 457 CGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECL--CGQCVCHSSDFG 514
Query: 119 SKCNE 123
+
Sbjct: 515 KITGK 519
Score = 28.1 bits (62), Expect = 1.9
Identities = 16/72 (22%), Positives = 21/72 (29%), Gaps = 9/72 (12%)
Query: 68 CEPGYWGLSKISSYAPDIDGCL---KCGCSQFGSVREDCEQMTGRCVCKPGVKGSKCNEC 124
C +G D C+ CS G C G C+C G CN
Sbjct: 508 CHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQ----CS--CGDCLCDSDWTGYYCNCT 561
Query: 125 LDPNKKLGPNGC 136
+ + NG
Sbjct: 562 TRTDTCMSSNGL 573
Score = 27.7 bits (61), Expect = 2.5
Identities = 17/123 (13%), Positives = 29/123 (23%), Gaps = 1/123 (0%)
Query: 26 PDNAGCPSTCGCNKLGSTEDACIEDTEQCKCKQGVGGLKCDRCEPGYWGLSKISSYAPDI 85
+N P C L + + + G+ +
Sbjct: 375 LNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCD 434
Query: 86 DGCLKCGCSQFGSVRE-DCEQMTGRCVCKPGVKGSKCNECLDPNKKLGPNGCMPGMEVKP 144
C + G C C PG GS+C + + + C P
Sbjct: 435 CACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPV 494
Query: 145 CNG 147
C+
Sbjct: 495 CSQ 497
>3b9c_A HSPC159; beta sandwich, unknown function; 1.90A {Homo sapiens} PDB:
2jj6_A
Length = 144
Score = 27.6 bits (61), Expect = 1.4
Identities = 13/61 (21%), Positives = 17/61 (27%), Gaps = 16/61 (26%)
Query: 133 PNGCMPGMEVKPCNGEPP------VINLQTGVELDCGSGANREDCPSDAYCHITQNFARC 186
G PG +V G I+L G ED P+D + F
Sbjct: 17 KGGMRPGKKVL-VMGIVDLNPESFAISLTCGDS---------EDPPADVAIELKAVFTDR 66
Query: 187 C 187
Sbjct: 67 Q 67
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 27.5 bits (61), Expect = 2.8
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 22 LAQGPDNAGCPSTCGCNK 39
LA G CP+ C C
Sbjct: 3 LASGRSVVSCPANCLCAS 20
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
replication, MCM complex, AAA+ Pro ATP-binding,
DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Length = 595
Score = 26.5 bits (59), Expect = 5.8
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 7/50 (14%)
Query: 88 CLKCGCSQFGSVREDCEQMTGRCVCKPGVKGSKCNECLDPNK-KLGPNGC 136
+ C Q ED + + P + C +C P + +L P
Sbjct: 138 HIHPDCMQEFEWPED--EEMPEVLEMP----TICPKCGKPGQFRLIPEKT 181
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 26.0 bits (56), Expect = 9.7
Identities = 12/39 (30%), Positives = 12/39 (30%), Gaps = 6/39 (15%)
Query: 91 CGCSQFGSVREDCEQ-----MTGRCVCKPGVKGSKCNEC 124
C CS C G C C PG G C E
Sbjct: 457 CNCSDTQPQAPHCSDGQGHLQCGVCSCAPGRLGRLC-ES 494
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.488
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,881,281
Number of extensions: 169355
Number of successful extensions: 783
Number of sequences better than 10.0: 1
Number of HSP's gapped: 595
Number of HSP's successfully gapped: 209
Length of query: 189
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,244,745
Effective search space: 428719245
Effective search space used: 428719245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)