RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11285
         (189 letters)



>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 51

 Score = 38.3 bits (89), Expect = 2e-05
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 35 CGCNKLGSTEDACIED--TEQCKCKQGVGGLKCDRCEPGYWGLS 76
          C CN  G+ +     +  T QC+C   V G  C  C+PGY+ L 
Sbjct: 1  CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQ 44



 Score = 30.6 bits (69), Expect = 0.015
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 91  CGCSQFGSVRE--DCEQMTGRCVCKPGVKGSKCNECLD 126
           C C+ +G+V++   C  +TG+C C P V G  C  C  
Sbjct: 1   CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDP 38


>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 56

 Score = 29.1 bits (65), Expect = 0.045
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 35 CGCNKLGSTEDACIEDTEQC-KCKQGVGGLKCDRCEPGYWGLSKISSYAPDIDGCLKC 91
          C  N   +    C   T +C KC     G  CDRC+ G++G           +   KC
Sbjct: 3  CNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFG------NPLAPNPADKC 54



 Score = 22.9 bits (49), Expect = 9.0
 Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 90  KCGCSQFGSVREDCEQMTGRCV-CKPGVKGSKCNECLD 126
           +C  +   +   +C ++TG C+ C     G  C+ C +
Sbjct: 2   QCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKE 39


>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI,
           PsaL {Synechococcus elongatus [TaxId: 32046]}
          Length = 151

 Score = 24.7 bits (54), Expect = 6.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 142 VKPCNGEPPVINLQTGV 158
           VKP NG+P V +L T +
Sbjct: 2   VKPYNGDPFVGHLSTPI 18


>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 55

 Score = 22.9 bits (49), Expect = 8.5
 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 35 CGCNKLGSTEDACIEDTEQC-KCKQGVGGLKCDRCEPGYWG 74
          C C    S           C  C  G  G +C+ C+ GY+G
Sbjct: 1  CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFG 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.139    0.488 

Gapped
Lambda     K      H
   0.267   0.0656    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 769,712
Number of extensions: 38966
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 52
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.2 bits)