BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11287
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PCE|A Chain A, Solution Structure And Dynamics Of Pec-60, A Protein Of
The Kazal Type Inhibitor Family, Determined By Nuclear
Magnetic Resonance Spectroscopy
Length = 60
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P CS Y+PVCG+DG++YE+ECKL L ++ + I ++ G C
Sbjct: 18 PDCSRIYDPVCGTDGVTYESECKLCLARIENKQDIQIVKDGEC 60
>pdb|2KCX|A Chain A, Solution Nmr Structure Of Kazal-1 Domain Of Human
Follistatin-Related Protein 3 (Fstl-3). Northeast
Structural Genomics Target Hr6186a
Length = 74
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 34 CVVKNGKAVCKC-PSCSA--EYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLCSK 90
C + G+ C+C P CS VCGSDG +Y +EC+L C+ +SV+Y G C K
Sbjct: 15 CRMLGGRPRCECAPDCSGLPARLQVCGSDGATYRDECELRAARCRGHPDLSVMYRGRCRK 74
>pdb|1Y1B|A Chain A, Solution Structure Of Anemonia Elastase Inhibitor
Length = 48
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 48 CSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
C+ +Y+PVCGSDGI+Y N C L +C+ I +++ G C
Sbjct: 8 CTMQYDPVCGSDGITYGNACMLLGASCRSDTPIELVHKGRC 48
>pdb|3B4V|C Chain C, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|D Chain D, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|G Chain G, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|H Chain H, X-Ray Structure Of Activin In Complex With Fstl3
Length = 237
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 34 CVVKNGKAVCKC-PSCSA--EYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLCSK 90
C + G+ C+C P CS VCGSDG +Y +EC+L C+ +SV+Y G C K
Sbjct: 84 CRMLGGRPRCECAPDCSGLPARLQVCGSDGATYRDECELRAARCRGHPDLSVMYRGRCRK 143
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 33 HCVVKNGKAVCKCPSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLCS 89
HCVV CP S+ +CG++ ++Y + C + C R I V + G C+
Sbjct: 165 HCVVCRAA---PCPVPSSPGQELCGNNNVTYISSCHMRQATCFLGRSIGVRHAGSCA 218
>pdb|3SEK|C Chain C, Crystal Structure Of The Myostatin:follistatin-Like 3
Complex
Length = 209
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 34 CVVKNGKAVCKC-PSCSA--EYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLCSK 90
C + G+ C+C P CS VCGSDG +Y +EC+L C+ +SV+Y G C K
Sbjct: 75 CRMLGGRPRCECAPDCSGLPARLQVCGSDGATYRDECELRAARCRGHPDLSVMYRGRCRK 134
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 33 HCVVKNGKAVCKCPSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLCS 89
HCVV CP S+ +CG++ ++Y + C + C R I V + G C+
Sbjct: 156 HCVVCRAA---PCPVPSSPGQELCGNNNVTYISSCHMRQATCFLGRSIGVRHAGSCA 209
>pdb|1Y1C|A Chain A, Solution Structure Of Anemonia Elastase Inhibitor
Analogue
Length = 48
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 48 CSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
C+ +Y+PVCGSDGI+Y N C L + + I +++ G C
Sbjct: 8 CTMQYDPVCGSDGITYGNACMLLCASARSDTPIELVHKGRC 48
>pdb|1CGJ|I Chain I, Three-Dimensional Structure Of The Complexes Between
Bovine ChymotrypsinogenA And Two Recombinant Variants
Of Human Pancreatic Secretory Trypsin Inhibitor
(Kazal-Type)
Length = 56
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 48 CSAEYNPVCGSDGISYENECKLNLEACQHSRQISVL 83
C+ EY PVCG+DG +Y NEC L E RQ S+L
Sbjct: 16 CTLEYRPVCGTDGDTYPNECVLCFE--NRKRQTSIL 49
>pdb|1CGI|I Chain I, Three-Dimensional Structure Of The Complexes Between
Bovine ChymotrypsinogenA And Two Recombinant Variants
Of Human Pancreatic Secretory Trypsin Inhibitor
(Kazal-Type)
pdb|1HPT|A Chain A, Three-Dimensional Structure Of A Recombinant Variant Of
Human Pancreatic Secretory Trypsin Inhibitor (Kazal
Type)
Length = 56
Score = 38.9 bits (89), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 48 CSAEYNPVCGSDGISYENECKLNLEACQHSRQISVL 83
C+ EY PVCG+DG +Y NEC L E RQ S+L
Sbjct: 16 CTYEYRPVCGTDGDTYPNECVLCFE--NRKRQTSIL 49
>pdb|1TGS|I Chain I, Three-Dimensional Structure Of The Complex Between
Pancreatic Secretory Inhibitor (Kazal Type) And
Trypsinogen At 1.8 Angstroms Resolution. Structure
Solution, Crystallographic Refinement And Preliminary
Structural Interpretation
Length = 56
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 48 CSAEYNPVCGSDGISYENECKLNLEACQHSRQISVL 83
C YNPVCG+DGI+Y NEC L E RQ VL
Sbjct: 16 CPKIYNPVCGTDGITYSNECVLCSE--NKKRQTPVL 49
>pdb|2JXD|A Chain A, Nmr Structure Of Human Serine Protease Inhibitor Kazal
Type Ii (Spink2)
Length = 62
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 44 KCPSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
+ P C +NPVCGSD +Y NEC L ++ + I ++ G C
Sbjct: 18 RLPGCPRHFNPVCGSDMSTYANECTLCMKIREGGHNIKIIRNGPC 62
>pdb|1TBR|R Chain R, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBR|S Chain S, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBQ|R Chain R, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBQ|S Chain S, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
Length = 103
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 30 NDGHCVVKNGKAVCKCPSCSA-EYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
+DG C + VC+ C EY PVCGSD I+Y+N C+L + S + + + G C
Sbjct: 44 HDGPCEPDEDEDVCQ--ECDGDEYKPVCGSDDITYDNNCRLECASISSSPGVELKHEGPC 101
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 39 GKAVCKCPSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
G C CP + VCGSDG +Y N C LN ++ ++ G C
Sbjct: 2 GGEPCACPH---ALHRVCGSDGETYSNPCTLNCAKFNGKPELVKVHDGPC 48
>pdb|1YU6|C Chain C, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|D Chain D, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 185
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 48 CSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLCSKGL 92
C+ NPVCG+DG++Y+NEC L + + + G C K L
Sbjct: 86 CNKALNPVCGTDGVTYDNECVLCAHNLEQGTSVGKKHDGECRKEL 130
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C+ EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 143 PACTLEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 185
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 48 CSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLCSKGL 92
C+ + P+CG+DG+++ +EC L ++ IS + G C + +
Sbjct: 22 CTEDLRPICGTDGVTH-SECLLCAYNIEYGTNISKEHDGECREAV 65
>pdb|2P6A|D Chain D, The Structure Of The Activin:follistatin 315 Complex
pdb|2P6A|C Chain C, The Structure Of The Activin:follistatin 315 Complex
Length = 315
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 37 KNGKAVCKC-PSCS--AEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLCSK 90
K K C C P CS PVCG DG +Y NEC L C+ ++ V Y G C K
Sbjct: 81 KKNKPRCVCAPDCSNITWKGPVCGLDGKTYRNECALLKARCKEQPELEVQYQGRCKK 137
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 30 NDGHCVVKNGKAVCKCPSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLCS 89
N+ +CV N +C P+ S +Y +CG+DG++Y + C L C R I + Y G C
Sbjct: 156 NNAYCVTCN--RICPEPASSEQY--LCGNDGVTYSSACHLRKATCLLGRSIGLAYEGKCI 211
Query: 90 KG 91
K
Sbjct: 212 KA 213
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 45 CPSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLCS 89
CP S PVC SD +Y +EC + AC + V + G C+
Sbjct: 245 CPD-SKSDEPVCASDNATYASECAMKEAACSSGVLLEVKHSGSCN 288
>pdb|2B0U|C Chain C, The Structure Of The Follistatin:activin Complex
pdb|2B0U|D Chain D, The Structure Of The Follistatin:activin Complex
pdb|3HH2|C Chain C, Crystal Structure Of The Myostatin:follistatin 288 Complex
pdb|3HH2|D Chain D, Crystal Structure Of The Myostatin:follistatin 288 Complex
Length = 288
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 37 KNGKAVCKC-PSCS--AEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLCSK 90
K K C C P CS PVCG DG +Y NEC L C+ ++ V Y G C K
Sbjct: 81 KKNKPRCVCAPDCSNITWKGPVCGLDGKTYRNECALLKARCKEQPELEVQYQGRCKK 137
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 30 NDGHCVVKNGKAVCKCPSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLCS 89
N+ +CV N +C P+ S +Y +CG+DG++Y + C L C R I + Y G C
Sbjct: 156 NNAYCVTCN--RICPEPASSEQY--LCGNDGVTYSSACHLRKATCLLGRSIGLAYEGKCI 211
Query: 90 KG 91
K
Sbjct: 212 KA 213
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 45 CPSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLCS 89
CP S PVC SD +Y +EC + AC + V + G C+
Sbjct: 245 CPD-SKSDEPVCASDNATYASECAMKEAACSSGVLLEVKHSGSCN 288
>pdb|2LEO|A Chain A, Solution Structure Of Esophageal Cancer-Related Gene 2
Length = 66
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 48 CSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
C Y PVCGSD I+Y NEC L E+ + + ++ L+ G C
Sbjct: 26 CPITYLPVCGSDYITYGNECHLCTESLKSNGRVQFLHDGSC 66
>pdb|2ARP|F Chain F, Activin A In Complex With Fs12 Fragment Of Follistatin
Length = 152
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 37 KNGKAVCKC-PSCS--AEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLCSK 90
K K C C P CS PVCG DG +Y NEC L C+ ++ V Y G C K
Sbjct: 21 KKNKPRCVCAPDCSNITWKGPVCGLDGKTYRNECALLKARCKEQPELEVQYQGKCKK 77
Score = 35.8 bits (81), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 30 NDGHCVVKNGKAVCKCPSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLCS 89
N+ +CV N CP S+ +CG+DG++Y + C L C R I + Y G C
Sbjct: 96 NNAYCVTCNRI----CPEPSSSEQSLCGNDGVTYSSACHLRKATCLLGRSIGLAYEGKCI 151
Query: 90 K 90
K
Sbjct: 152 K 152
>pdb|1SGP|I Chain I, Ala 18 Variant Of Turkey Ovomucoid Inhibitor Third
Domain Complexed With Streptomyces Griseus Proteinase B
Length = 51
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C+AEY P+CGSD +Y N+C + + +++ + G C
Sbjct: 9 PACTAEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 51
>pdb|1LR7|A Chain A, Crystal Structure Of Fs1, The Heparin-Binding Domain Of
Follistatin, Complexed With The Heparin Analogue
Sucrose Octasulphate (Sos)
pdb|1LR8|A Chain A, Crystal Structure Of Fs1, The Heparin-Binding Domain Of
Follistatin, Complexed With The Heparin Analogue D-Myo-
Inositol Hexasulphate (Ins6s)
pdb|1LR9|A Chain A, Structure Of Fs1, The Heparin-Binding Domain Of
Follistatin
Length = 74
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 37 KNGKAVCKC-PSCS--AEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLCS 89
K K C C P CS PVCG DG +Y NEC L C+ ++ V Y G C
Sbjct: 19 KKNKPRCVCAPDCSNITWKGPVCGLDGKTYRNECALLKARCKEQPELEVQYQGKCK 74
>pdb|1CT0|I Chain I, Crystal Structure Of The Omtky3 P1 Variant Omtky3-Ser18i
In Complex With Sgpb
Length = 51
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C++EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 9 PACTSEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 51
>pdb|1SGQ|I Chain I, Gly 18 Variant Of Turkey Ovomucoid Inhibitor Third
Domain Complexed With Streptomyces Griseus Proteinase B
Length = 51
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C+ EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 9 PACTGEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 51
>pdb|1CT2|I Chain I, Crystal Structure Of The Omtky3 P1 Variant Omtky3-Thr18i
In Complex With Sgpb
Length = 51
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C+ EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 9 PACTTEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 51
>pdb|1Z7K|B Chain B, Crystal Structure Of Trypsin- Ovomucoid Turkey Egg White
Inhibitor Complex
Length = 62
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 48 CSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
C+ NPVCG+DG++Y+NEC L + + + G C
Sbjct: 22 CNKALNPVCGTDGVTYDNECVLCAHNLEQGTSVGKKHDGEC 62
>pdb|1CT4|I Chain I, Crystal Structure Of The Omtky3 P1 Variant Omtky3-Val18i
In Complex With Sgpb
Length = 51
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C+ EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 9 PACTVEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 51
>pdb|2GKT|I Chain I, Crystal Structure Of The P14'-Ala32 Variant Of The N-
Terminally Truncated Omtky3-Del(1-5)
pdb|2GKV|A Chain A, Crystal Structure Of The Sgpb:p14'-Ala32 Omtky3-Del(1-5)
Complex
pdb|2GKV|B Chain B, Crystal Structure Of The Sgpb:p14'-Ala32 Omtky3-Del(1-5)
Complex
Length = 51
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C+ EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 9 PACTLEYRPLCGSDNKTYANKCNFCNAVVESNGTLTLSHFGKC 51
>pdb|2ERW|A Chain A, Crystal Structure Of Infestin 4, A Factor Xiia Inhibitor
Length = 56
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 47 SCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLCSKGLLREI 96
+C Y PVCGSDG +Y N C LN A + +++ G C + + +
Sbjct: 7 ACFRNYVPVCGSDGKTYGNPCMLNCAAQTKVPGLKLVHEGRCQRSNVEQF 56
>pdb|1DS2|I Chain I, Crystal Structure Of Sgpb:omtky3-Coo-Leu18i
Length = 51
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C+ EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 9 PACTXEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 51
>pdb|4OVO|A Chain A, Refined X-Ray Crystal Structures Of The Reactive Site
Modified Ovomucoid Inhibitor Third Domains From Silver
Pheasant (Omsvp3(Asterisk)) And From Japanese Quail
(Omjpq3(Asterisk))
Length = 56
Score = 35.0 bits (79), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C+ EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 14 PACTMEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 56
>pdb|1HJA|I Chain I, Lys 18 Variant Of Turkey Ovomucoid Inhibitor Third
Domain Complexed With Alpha-Chymotrypsin
pdb|2NU3|I Chain I, Accommodation Of Positively-Charged Residues In A
Hydrophobic Specificity Pocket: Crystal Structures Of
Sgpb In Complex With Omtky3 Variants Lys18i And Arg18i
pdb|2NU4|I Chain I, Accommodation Of Positively-Charged Residues In A
Hydrophobic Specificity Pocket: Crystal Structures Of
Sgpb In Complex With Omtky3 Variants Lys18i And Arg18i
Length = 51
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C+ EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 9 PACTKEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 51
>pdb|1IY5|A Chain A, Solution Structure Of Wild Type Omsvp3
Length = 54
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C+ EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 12 PACTMEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 54
>pdb|2OVO|A Chain A, The Crystal And Molecular Structure Of The Third Domain
Of Silver Pheasant Ovomucoid (Omsvp3)
Length = 56
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C+ EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 14 PACTMEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 56
>pdb|2NU0|I Chain I, Molecular Structures Of The Complexes Of Sgpb With
Omtky3 Aromatic P1 Variants Trp18i, His18i, Phe18i, And
Tyr18i
Length = 51
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C+ EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 9 PACTWEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 51
>pdb|2SGP|I Chain I, Pro 18 Variant Of Turkey Ovomucoid Inhibitor Third
Domain Complexed With Streptomyces Griseus Proteinase B
At Ph 6.5
Length = 51
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C+ EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 9 PACTPEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 51
>pdb|2SGQ|I Chain I, Gln 18 Variant Of Turkey Ovomucoid Inhibitor Third
Domain Complexed With Streptomyces Griseus Proteinase B
At Ph 6.5
pdb|3SGQ|I Chain I, Gln 18 Variant Of Turkey Ovomucoid Inhibitor Third
Domain Complexed With Streptomyces Griseus Proteinase B
At Ph 10.7
Length = 51
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C+ EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 9 PACTQEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 51
>pdb|2NU2|I Chain I, Accommodation Of Positively-Charged Residues In A
Hydrophobic Specificity Pocket: Crystal Structures Of
Sgpb In Complex With Omtky3 Variants Lys18i And Arg18i
Length = 51
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C+ EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 9 PACTREYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 51
>pdb|1SGE|I Chain I, Glu 18 Variant Of Turkey Ovomucoid Inhibitor Third
Domain Complexed With Streptomyces Griseus Proteinase B
At Ph 6.5
pdb|2SGE|I Chain I, Glu 18 Variant Of Turkey Ovomucoid Inhibitor Third
Domain Complexed With Streptomyces Griseus Proteinase B
At Ph 10.7
Length = 51
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C+ EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 9 PACTEEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 51
>pdb|1CSO|I Chain I, Crystal Structure Of The Omtky3 P1 Variant Omtky3-Ile18i
In Complex With Sgpb
Length = 51
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C+ EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 9 PACTIEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 51
>pdb|2SGF|I Chain I, Phe 18 Variant Of Turkey Ovomucoid Inhibitor Third
Domain Complexed With Streptomyces Griseus Proteinase B
Length = 51
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C+ EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 9 PACTFEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 51
>pdb|1SGD|I Chain I, Asp 18 Variant Of Turkey Ovomucoid Inhibitor Third
Domain Complexed With Streptomyces Griseus Proteinase B
At Ph 6.5
pdb|2SGD|I Chain I, Asp 18 Variant Of Turkey Ovomucoid Inhibitor Third
Domain Complexed With Streptomyces Griseus Proteinase B
At Ph 10.7
Length = 51
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C+ EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 9 PACTDEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 51
>pdb|1CHO|I Chain I, Crystal And Molecular Structures Of The Complex Of
Alpha- Chymotrypsin With Its Inhibitor Turkey Ovomucoid
Third Domain At 1.8 Angstroms Resolution
pdb|3SGB|I Chain I, Structure Of The Complex Of Streptomyces Griseus
Protease B And The Third Domain Of The Turkey Ovomucoid
Inhibitor At 1.8 Angstroms Resolution
pdb|1PPF|I Chain I, X-Ray Crystal Structure Of The Complex Of Human
Leukocyte Elastase (Pmn Elastase) And The Third Domain
Of The Turkey Ovomucoid Inhibitor
pdb|1OMT|A Chain A, Solution Structure Of Ovomucoid (Third Domain) From
Domestic Turkey (298k, Ph 4.1) (Nmr, 50 Structures)
(Standard Noesy Analysis)
pdb|1OMU|A Chain A, Solution Structure Of Ovomucoid (Third Domain) From
Domestic Turkey (298k, Ph 4.1) (Nmr, 50 Structures)
(Refined Model Using Network Editing Analysis)
pdb|1TUR|A Chain A, Solution Structure Of Turkey Ovomucoid Third Domain As
Determined From Nuclear Magnetic Resonance Data
pdb|1TUS|A Chain A, Solution Structure Of Reactive-Site Hydrolyzed Turkey
Ovomucoid Third Domain By Nuclear Magnetic Resonance
And Distance Geometry Methods
Length = 56
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C+ EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 14 PACTLEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 56
>pdb|2NU1|I Chain I, Molecular Structures Of The Complexes Of Sgpb With
Omtky3 Aromatic P1 Variants Trp18i, His18i, Phe18i And
Tyr18i
Length = 51
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C+ EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 9 PACTHEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 51
>pdb|1SGR|I Chain I, Leu 18 Variant Of Turkey Ovomucoid Inhibitor Third
Domain Complexed With Streptomyces Griseus Proteinase B
pdb|1R0R|I Chain I, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|2GKR|I Chain I, Crystal Structure Of The N-Terminally Truncated Omtky3-
Del(1-5)
Length = 51
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C+ EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 9 PACTLEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 51
>pdb|1SGN|I Chain I, Asn 18 Variant Of Turkey Ovomucoid Inhibitor Third
Domain Complexed With Streptomyces Griseus Proteinase B
Length = 51
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C+ EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 9 PACTNEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 51
>pdb|1OVO|A Chain A, Crystallographic Refinement Of Japanese Quail Ovomucoid,
A Kazal-Type Inhibitor, And Model Building Studies Of
Complexes With Serine Proteases
pdb|1OVO|B Chain B, Crystallographic Refinement Of Japanese Quail Ovomucoid,
A Kazal-Type Inhibitor, And Model Building Studies Of
Complexes With Serine Proteases
pdb|1OVO|C Chain C, Crystallographic Refinement Of Japanese Quail Ovomucoid,
A Kazal-Type Inhibitor, And Model Building Studies Of
Complexes With Serine Proteases
pdb|1OVO|D Chain D, Crystallographic Refinement Of Japanese Quail Ovomucoid,
A Kazal-Type Inhibitor, And Model Building Studies Of
Complexes With Serine Proteases
pdb|3OVO|A Chain A, Refined X-Ray Crystal Structures Of The Reactive Site
Modified Ovomucoid Inhibitor Third Domains From Silver
Pheasant (Omsvp3(Asterisk)) And From Japanese Quail
(Omjpq3(Asterisk))
Length = 56
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C +Y PVCGSD +Y N+C + + +++ + G C
Sbjct: 14 PACPKDYRPVCGSDNKTYSNKCNFCNAVVESNGTLTLNHFGKC 56
>pdb|1SGY|I Chain I, Tyr 18 Variant Of Turkey Ovomucoid Inhibitor Third
Domain Complexed With Streptomyces Griseus Proteinase B
At Ph 6.5
Length = 51
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C+ EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 9 PACTYEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 51
>pdb|1DS3|I Chain I, Crystal Structure Of Omtky3-Ch2-Asp19i
Length = 51
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C+ +Y P+CGSD +Y N+C + + +++ + G C
Sbjct: 9 PACTXDYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 51
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 33.5 bits (75), Expect = 0.030, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 22 PCSSNPCRNDGHCVVKNGKAVCKC 45
PC SNPC+N+G C + VC C
Sbjct: 396 PCLSNPCKNNGMCRDGWNRYVCDC 419
Score = 28.5 bits (62), Expect = 0.86, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 15 GYLGETGPCSSNPCRNDGHCVVKNGKAVCKCPSCSAEYNPVCGSDGISY 63
G G + C + C N G C+ + C C S ++ P+C G +Y
Sbjct: 796 GCEGPSTTCQEDSCSNQGVCLQQWDGFSCDC-SMTSFSGPLCNDPGTTY 843
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 33.5 bits (75), Expect = 0.033, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 22 PCSSNPCRNDGHCVVKNGKAVCKC 45
PC SNPC+N+G C + VC C
Sbjct: 621 PCLSNPCKNNGMCRDGWNRYVCDC 644
Score = 28.5 bits (62), Expect = 0.97, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 15 GYLGETGPCSSNPCRNDGHCVVKNGKAVCKCPSCSAEYNPVCGSDGISY 63
G G + C + C N G C+ + C C S ++ P+C G +Y
Sbjct: 1012 GCEGPSTTCQEDSCSNQGVCLQQWDGFSCDC-SMTSFSGPLCNDPGTTY 1059
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 33.1 bits (74), Expect = 0.036, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 22 PCSSNPCRNDGHCVVKNGKAVCKC 45
PC SNPC+N+G C + VC C
Sbjct: 621 PCLSNPCKNNGMCRDGWNRYVCDC 644
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 15 GYLGETGPCSSNPCRNDGHCVVKNGKAVCKCPSCSAEYNPVCGSDGISY 63
G G + C + C N G C+ + C C S ++ P+C G +Y
Sbjct: 1021 GCEGPSTTCQEDSCSNQGVCLQQWDGFSCDC-SMTSFSGPLCNDPGTTY 1068
>pdb|1IY6|A Chain A, Solution Structure Of Omsvp3 Variant, P14cN39C
Length = 54
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 47 SCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
+C+ EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 13 ACTMEYRPLCGSDNKTYGNKCNFCCAVVESNGTLTLSHFGKC 54
>pdb|3PIS|D Chain D, Crystal Structure Of Carcinoscorpius Rotundicauda Serine
Protease Inhibitor Domain 1
pdb|3PIS|A Chain A, Crystal Structure Of Carcinoscorpius Rotundicauda Serine
Protease Inhibitor Domain 1
Length = 42
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 47 SCSAEYNPVCGSDGISYENECKLN 70
SC Y PVCG++G Y+NEC LN
Sbjct: 2 SCPHTYKPVCGANGEVYDNECFLN 25
>pdb|1M8B|A Chain A, Solution Structure Of The C State Of Turkey Ovomucoid At
Ph 2.5
pdb|1M8C|A Chain A, Solution Structure Of The T State Of Turkey Ovomucoid At
Ph 2.5
Length = 56
Score = 32.0 bits (71), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 47 SCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
+C+ EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 15 ACTLEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 56
>pdb|1NUB|A Chain A, Helix C Deletion Mutant Of Bm-40 Fs-Ec Domain Pair
pdb|1NUB|B Chain B, Helix C Deletion Mutant Of Bm-40 Fs-Ec Domain Pair
Length = 229
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Query: 21 GPCSSNPCRNDGHCVV-KNGKAVC------KCPSCSAEYNPVCGSDGISYENEC-----K 68
PC ++ C++ C + +N +C CP+ E+ VC +D ++++ C K
Sbjct: 4 APCQNHHCKHGKVCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATK 63
Query: 69 LNLEACQHSRQISVLYIGLCS 89
LE + ++ + YIG C
Sbjct: 64 CTLEGTKKGHKLHLDYIGPCK 84
>pdb|3QTL|D Chain D, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
Length = 75
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 48 CSAEYNPVCGSDGISYENECKLN 70
C Y PVCG++G Y+NEC LN
Sbjct: 3 CPHTYKPVCGANGEVYDNECFLN 25
>pdb|2V53|A Chain A, Crystal Structure Of A Sparc-Collagen Complex
Length = 230
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 23/85 (27%)
Query: 25 SNPCRNDGHCVVKNGKA-----------VCK----CPSCSAEYNPVCGSDGISYENEC-- 67
+NPC+N HC K+GK VC+ CP+ E+ VC +D ++++ C
Sbjct: 4 ANPCQN-HHC--KHGKVCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHF 60
Query: 68 ---KLNLEACQHSRQISVLYIGLCS 89
K LE + ++ + YIG C
Sbjct: 61 FATKCTLEGTKKGHKLHLDYIGPCK 85
>pdb|1BMO|A Chain A, Bm-40, FsEC DOMAIN PAIR
pdb|1BMO|B Chain B, Bm-40, FsEC DOMAIN PAIR
Length = 233
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 22 PCSSNPCRNDGHCVV-KNGKAVC------KCPSCSAEYNPVCGSDGISYENEC-----KL 69
PC ++ C++ C + +N +C CP+ E+ VC +D ++++ C K
Sbjct: 1 PCQNHHCKHGKVCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKC 60
Query: 70 NLEACQHSRQISVLYIGLCS 89
LE + ++ + YIG C
Sbjct: 61 TLEGTKKGHKLHLDYIGPCK 80
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
Length = 604
Score = 30.0 bits (66), Expect = 0.31, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 13 SVGYLGETGPCSSNPCRNDGHCV 35
++G PC SNPC+N G C+
Sbjct: 11 ALGLSQAANPCCSNPCQNRGECM 33
>pdb|1BUS|A Chain A, Solution Conformation Of Proteinase Inhibitor Iia From
Bull Seminal Plasma By 1h Nuclear Magnetic Resonance
And Distance Geometry
pdb|2BUS|A Chain A, Solution Conformation Of Proteinase Inhibitor Iia From
Bull Seminal Plasma By 1h Nuclear Magnetic Resonance
And Distance Geometry
Length = 57
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 48 CSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
C+ E NP CGS+G +Y N+C + +I++ + G C
Sbjct: 17 CTRESNPHCGSNGETYGNKCAFCKAVMKSGGKINLKHRGKC 57
>pdb|1LDT|L Chain L, Complex Of Leech-Derived Tryptase Inhibitor With Porcine
Trypsin
pdb|1AN1|I Chain I, Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX
Length = 46
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 40 KAVCKCPSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLCSKGLL 93
K VC CP PVCGSDG +Y N C + C +S+ G C G+L
Sbjct: 1 KKVCACPK---ILKPVCGSDGRTYANSC---IARCNG---VSIKSEGSCPTGIL 45
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 30.0 bits (66), Expect = 0.38, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 22 PCSSNPCRNDGHCV 35
PC SNPC+N G C+
Sbjct: 9 PCCSNPCQNRGECM 22
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 30.0 bits (66), Expect = 0.38, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 22 PCSSNPCRNDGHCV 35
PC SNPC+N G C+
Sbjct: 7 PCCSNPCQNRGECM 20
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 29.6 bits (65), Expect = 0.39, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 22 PCSSNPCRNDGHCV 35
PC SNPC+N G C+
Sbjct: 26 PCCSNPCQNRGECM 39
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 29.6 bits (65), Expect = 0.39, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 22 PCSSNPCRNDGHCV 35
PC SNPC+N G C+
Sbjct: 8 PCCSNPCQNRGECM 21
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 29.6 bits (65), Expect = 0.39, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 22 PCSSNPCRNDGHCV 35
PC SNPC+N G C+
Sbjct: 8 PCCSNPCQNRGECM 21
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 29.6 bits (65), Expect = 0.39, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 22 PCSSNPCRNDGHCV 35
PC SNPC+N G C+
Sbjct: 3 PCCSNPCQNRGECM 16
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 29.6 bits (65), Expect = 0.39, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 22 PCSSNPCRNDGHCV 35
PC SNPC+N G C+
Sbjct: 7 PCCSNPCQNRGECM 20
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
Length = 587
Score = 29.6 bits (65), Expect = 0.39, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 22 PCSSNPCRNDGHCV 35
PC SNPC+N G C+
Sbjct: 3 PCCSNPCQNRGECM 16
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
Length = 552
Score = 29.6 bits (65), Expect = 0.40, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 22 PCSSNPCRNDGHCV 35
PC SNPC+N G C+
Sbjct: 3 PCCSNPCQNRGECM 16
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 29.6 bits (65), Expect = 0.40, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 22 PCSSNPCRNDGHCV 35
PC SNPC+N G C+
Sbjct: 3 PCCSNPCQNRGECM 16
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 29.6 bits (65), Expect = 0.40, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 22 PCSSNPCRNDGHCV 35
PC SNPC+N G C+
Sbjct: 3 PCCSNPCQNRGECM 16
>pdb|2KMO|A Chain A, Solution Structure Of Native Leech-Derived Tryptase
Inhibitor, Ldti
pdb|2KMP|A Chain A, Solution Structure Of Intermeidate Iia Of Leeck-Derived
Tryptase Inhibitor, Ldti.
pdb|2KMQ|A Chain A, Solution Structure Of Intermediate Iib Of Leech-Derived
Tryptase Inhibitor, Ldti.
pdb|2KMR|A Chain A, Solution Structure Of Intermediate Iic Of Leech-Derived
Tryptase Inhibitor, Ldti
Length = 44
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 40 KAVCKCPSCSAEYNPVCGSDGISYENEC 67
K VC CP PVCGSDG +Y N C
Sbjct: 1 KKVCACPK---ILKPVCGSDGRTYANSC 25
>pdb|1UVG|A Chain A, Solution Structure Of The 15th Domain Of Lekti
Length = 78
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 48 CSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLCSK 90
C + PVCG DG +Y N C L E + G C +
Sbjct: 20 CPKDLKPVCGDDGQTYNNPCMLCHENLIRQTNTHIRSTGKCEE 62
>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6
Length = 410
Score = 28.5 bits (62), Expect = 0.89, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 15 GYLGETGPCSSNPCRNDGHCVVKNGKAVCKCPSCSAEYNPVCGSDGISY 63
G G + C + C N G C+ + C C S ++ P+C G +Y
Sbjct: 180 GCEGPSTTCQEDSCSNQGVCLQQWDGFSCDC-SMTSFSGPLCNDPGTTY 227
>pdb|1UVF|A Chain A, Solution Structure Of The Structured Part Of The 15th
Domain Of Lekti
Length = 61
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 48 CSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
C + PVCG DG +Y N C L E + G C
Sbjct: 20 CPKDLKPVCGDDGQTYNNPCMLCHENLIRQTNTHIRSTGKC 60
>pdb|3UZE|C Chain C, Crystal Structure Of The Dengue Virus Serotype 3
Envelope Protein Domain Iii In Complex With The
Variable Domains Of Mab 4e11
pdb|3UZE|D Chain D, Crystal Structure Of The Dengue Virus Serotype 3
Envelope Protein Domain Iii In Complex With The
Variable Domains Of Mab 4e11
Length = 139
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 14 VGYLGETGPCSSNPCRNDGHCVVKNGKAVCKCPSCSAEYNPV 55
V Y GE PC DG NG+ + P + + PV
Sbjct: 30 VEYKGEDAPCKIPFSTEDGQGKAHNGRLITANPVVTKKEEPV 71
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 7/34 (20%)
Query: 20 TGPCSSNPCRNDGHCVVKNG-------KAVCKCP 46
GPC+ NPC N G C + VCKCP
Sbjct: 52 AGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCP 85
>pdb|3TJQ|A Chain A, N-Domain Of Htra1
Length = 140
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 50 AEYNPVCGSDGISYENECKLNLEACQ----HSRQISVLYIGLC 88
A PVCGSD +Y N C+L + + H + VL G C
Sbjct: 95 ASSEPVCGSDANTYANLCQLRAASRRSERLHRPPVIVLQRGAC 137
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 20 TGPCSSNPCRNDGHCVVKNGKAVCKCPS 47
T C+S+PC ++G C+ K + C+CP+
Sbjct: 83 TDECASSPCLHNGRCLDKINEFQCECPT 110
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 11 FDSVGYLGETGP--------CSSNPCRNDGHCVVKNGKAVCKC 45
F+ G TGP C SNPC+ND C+ + G+ C C
Sbjct: 28 FECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCIC 70
>pdb|4BDW|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii In Complex With Holmium
pdb|4BDX|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii
Length = 85
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 23 CSSNPCRNDGHCVVKNGKAVCKCP 46
C +NPC + G C+ G +C CP
Sbjct: 48 CRTNPCLHGGRCLEVEGHRLCHCP 71
>pdb|2O05|A Chain A, Human Spermidine Synthase
pdb|2O05|B Chain B, Human Spermidine Synthase
pdb|2O06|A Chain A, Human Spermidine Synthase
pdb|2O06|B Chain B, Human Spermidine Synthase
pdb|2O07|A Chain A, Human Spermidine Synthase
pdb|2O07|B Chain B, Human Spermidine Synthase
pdb|2O0L|A Chain A, Human Spermidine Synthase
pdb|2O0L|B Chain B, Human Spermidine Synthase
Length = 304
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 59 DGISYENECKLNLEACQHSRQISVLYIGLCSKGLLREIDK 98
D SY+ E NL C H VL IG G+LRE+ K
Sbjct: 77 DEFSYQ-EMIANLPLCSHPNPRKVLIIGGGDGGVLREVVK 115
>pdb|3RW9|A Chain A, Crystal Structure Of Human Spermidine Synthase In Complex
With Decarboxylated S-Adenosylhomocysteine
pdb|3RW9|B Chain B, Crystal Structure Of Human Spermidine Synthase In Complex
With Decarboxylated S-Adenosylhomocysteine
Length = 304
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 59 DGISYENECKLNLEACQHSRQISVLYIGLCSKGLLREIDK 98
D SY+ E NL C H VL IG G+LRE+ K
Sbjct: 77 DEFSYQ-EMIANLPLCSHPNPRKVLIIGGGDGGVLREVVK 115
>pdb|4ALA|C Chain C, Structure Of Dengue Virus Diii In Complex With Fab 2h12
Length = 101
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 14 VGYLGETGPCSSNPCRNDGHCVVKNGKAVCKCPSCSAEYNPV 55
V Y GE PC DG NG+ + P + + PV
Sbjct: 30 VEYKGEDAPCKIPFSTEDGQGKAHNGRLITANPVVTKKEEPV 71
>pdb|2I14|A Chain A, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
pdb|2I14|B Chain B, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
pdb|2I14|C Chain C, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
pdb|2I14|D Chain D, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
pdb|2I14|E Chain E, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
pdb|2I14|F Chain F, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
Length = 395
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 28 CRNDGHCVVKNGKAVCKCPSCSAEYNPV 55
C N + VV K + +CP C+A+ P+
Sbjct: 333 CENGHYHVVPANKKLERCPVCNAKVEPL 360
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of
Mouse Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 19 ETGPCSSNPCRNDGHCVVKNGKAVCKC 45
+ C SNPC+ND C+ + G+ C C
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCIC 27
>pdb|3IHM|A Chain A, Structure Of The Oxygenase Component Of A Pseudomonas
Styrene Monooxygenase
pdb|3IHM|B Chain B, Structure Of The Oxygenase Component Of A Pseudomonas
Styrene Monooxygenase
Length = 430
Score = 26.2 bits (56), Expect = 4.3, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 27 PCRNDGHCVVKNGKAVCKCPSCSAEYNPVCG 57
P DGH + NGK + A +PV G
Sbjct: 295 PAFRDGHATLNNGKTIIGLGDIQATVDPVLG 325
>pdb|3VTT|A Chain A, High Resolution Crystal Structure Of Dengue 3 Envelope
Protein Domain Iii (Ed3)
pdb|3VTT|B Chain B, High Resolution Crystal Structure Of Dengue 3 Envelope
Protein Domain Iii (Ed3)
Length = 107
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 14 VGYLGETGPCSSNPCRNDGHCVVKNGKAVCKCPSCSAEYNPV 55
V Y GE PC DG NG+ + P + + PV
Sbjct: 31 VEYKGEDAPCKIPFSTEDGQGKAHNGRLITANPVVTKKEEPV 72
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 20 TGPCSSNPCRNDGHCVVKNGKAVCKCPS 47
T C+S+PC ++G C+ K + C+CP+
Sbjct: 81 TDECASSPCLHNGRCLDKINEFQCECPT 108
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 11 FDSVGYLGETGP--------CSSNPCRNDGHCVVKNGKAVCKC 45
F+ G TGP C SNPC+ND C+ + G+ C C
Sbjct: 26 FECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCIC 68
>pdb|1UZG|A Chain A, Crystal Structure Of The Dengue Type 3 Virus Envelope
Protein
pdb|1UZG|B Chain B, Crystal Structure Of The Dengue Type 3 Virus Envelope
Protein
Length = 392
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 14 VGYLGETGPCSSNPCRNDGHCVVKNGKAVCKCPSCSAEYNPV 55
V Y GE PC DG NG+ + P + + PV
Sbjct: 322 VEYKGEDAPCKIPFSTEDGQGKAHNGRLITANPVVTKKEEPV 363
>pdb|1KMA|A Chain A, Nmr Structure Of The Domain-I Of The Kazal-Type Thrombin
Inhibitor Dipetalin
Length = 55
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 43 CKCPSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLCSK 90
C+CP + VCGSDG +Y N C L + + + ++ G C +
Sbjct: 6 CECPR---ALHRVCGSDGNTYSNPCMLTCAKHEGNPDLVQVHEGPCDE 50
>pdb|2F3C|I Chain I, Crystal Structure Of Infestin 1, A Kazal-Type
Serineprotease Inhibitor, In Complex With Trypsin
Length = 55
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 47 SCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLCS 89
+C + VCGSDG +Y N C L+ + + ++ G C
Sbjct: 7 ACPRVLHRVCGSDGNTYSNPCTLDCAKHEGKPDLVQVHEGPCD 49
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 25.4 bits (54), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 11/50 (22%)
Query: 27 PCRNDGHCVVKNGKAVCKCPS------CSAEY-NPVCGSDGISYE-NECK 68
PCRN G C+ GK+ CKC CS P CG+ G +E N+C+
Sbjct: 250 PCRNGGKCI---GKSKCKCSKGYQGDLCSKPVCEPGCGAHGTCHEPNKCQ 296
>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
pdb|4A5W|B Chain B, Crystal Structure Of C5b6
pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
Length = 913
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 32 GHCVV--KNGKAVCKCPS----CSAEYNPVCGSDGISYEN----ECKLNLEACQHSRQIS 81
GHC + K + C C S CS +C D S + CK E C +++Q+
Sbjct: 750 GHCQLGQKQSGSECICMSPEEDCSHHSEDLCVFDTDSNDYFTSPACKFLAEKCLNNQQLH 809
Query: 82 VLYIGLCSKG 91
L+IG C G
Sbjct: 810 FLHIGSCQDG 819
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,490,243
Number of Sequences: 62578
Number of extensions: 129008
Number of successful extensions: 396
Number of sequences better than 100.0: 131
Number of HSP's better than 100.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 257
Number of HSP's gapped (non-prelim): 154
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)