RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11287
(112 letters)
>1lr7_A Follistatin, FS1; heparin-binding, cystine-rich, sucrose
octasulphate, hormone/growth factor complex; HET: SO4;
1.50A {Rattus norvegicus} SCOP: g.3.11.3 g.68.1.1 PDB:
1lr8_A* 1lr9_A
Length = 74
Score = 60.7 bits (147), Expect = 5e-14
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 22 PCSSNPCRNDGHCVV-KNGKAVCKCP---SCSAEYNPVCGSDGISYENECKLNLEACQHS 77
C + C C + K K C C S PVCG DG +Y NEC L C+
Sbjct: 3 TCENVDCGPGKKCRMNKKNKPRCVCAPDCSNITWKGPVCGLDGKTYRNECALLKARCKEQ 62
Query: 78 RQISVLYIGLC 88
++ V Y G C
Sbjct: 63 PELEVQYQGKC 73
>1pce_A PEC-60; proteinase inhibitor(kazal type); NMR {Sus scrofa} SCOP:
g.68.1.1
Length = 60
Score = 59.1 bits (143), Expect = 2e-13
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 43 CKCPSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
+ P CS Y+PVCG+DG++YE+ECKL L ++ + I ++ G C
Sbjct: 15 TESPDCSRIYDPVCGTDGVTYESECKLCLARIENKQDIQIVKDGEC 60
>1uvf_A Serine proteinase inhibitor kazal type 5; trypsin inhibitor,
protease; NMR {Homo sapiens}
Length = 61
Score = 58.3 bits (141), Expect = 4e-13
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 35 VVKNGKAVCKCP-SCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
+ K+ + + + C + PVCG DG +Y N C L E + G C
Sbjct: 6 MCKDYRVLPRIGYLCPKDLKPVCGDDGQTYNNPCMLCHENLIRQTNTHIRSTGKC 60
>3sek_C Follistatin-related protein 3; protein-protein complex, TB domain,
cystine knot motif, TGF- fold, disulfide linked dimer,
follistatin domain (FSD); HET: NAG; 2.40A {Homo sapiens}
PDB: 2kcx_A
Length = 209
Score = 59.9 bits (144), Expect = 2e-12
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 22 PCSSNPCRNDGHCVVKNGKAVCKCP---SCSAEYNPVCGSDGISYENECKLNLEACQHSR 78
C C C + G+ C+C S VCGSDG +Y +EC+L C+
Sbjct: 63 SCDGVECGPGKACRMLGGRPRCECAPDCSGLPARLQVCGSDGATYRDECELRAARCRGHP 122
Query: 79 QISVLYIGLC 88
+SV+Y G C
Sbjct: 123 DLSVMYRGRC 132
Score = 47.6 bits (112), Expect = 7e-08
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 43 CKCPSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLCS 89
CP S+ +CG++ ++Y + C + C R I V + G C+
Sbjct: 163 APCPVPSSPGQELCGNNNVTYISSCHMRQATCFLGRSIGVRHAGSCA 209
>1uvg_A Serine proteinase inhibitor kazal type 5; trypsin inhibitor,
protease; NMR {Homo sapiens}
Length = 78
Score = 56.6 bits (136), Expect = 3e-12
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 35 VVKNGKAVCKCP-SCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLCSK 90
+ K+ + + + C + PVCG DG +Y N C L E + G C +
Sbjct: 6 MCKDYRVLPRIGYLCPKDLKPVCGDDGQTYNNPCMLCHENLIRQTNTHIRSTGKCEE 62
>3b4v_C Follistatin-like 3; ligand-inhibitor signalling complex, cleavage
on PAIR of BAS residues, glycoprotein, growth factor,
hormone, secreted; HET: NAG; 2.48A {Homo sapiens}
Length = 237
Score = 59.1 bits (142), Expect = 5e-12
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 22 PCSSNPCRNDGHCVVKNGKAVCKCP---SCSAEYNPVCGSDGISYENECKLNLEACQHSR 78
C C C + G+ C+C S VCGSDG +Y +EC+L C+
Sbjct: 72 SCDGVECGPGKACRMLGGRPRCECAPDCSGLPARLQVCGSDGATYRDECELRAARCRGHP 131
Query: 79 QISVLYIGLCSK 90
+SV+Y G C K
Sbjct: 132 DLSVMYRGRCRK 143
Score = 45.7 bits (107), Expect = 4e-07
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 43 CKCPSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLCS 89
CP S+ +CG++ ++Y + C + C R I V + G C+
Sbjct: 172 APCPVPSSPGQELCGNNNVTYISSCHMRQATCFLGRSIGVRHAGSCA 218
Score = 42.6 bits (99), Expect = 5e-06
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 24 SSNPCRNDGHCVVKNGK-AVCKCPSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISV 82
S G C ++ G+ A C + C + G L + + +
Sbjct: 2 GSGNPAPGGVCWLQQGQEATCSLVLQTDVTRAECCASGNIDTAWSNLTHPGNKINLLGFL 61
>1cgj_I Pancreatic secretory trypsin inhibitor (kazal type) variant 4;
serine protease/inhibitor complex; 2.30A {Homo sapiens}
SCOP: g.68.1.1
Length = 56
Score = 53.7 bits (129), Expect = 2e-11
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 34 CVVKNGKAVCKCPSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
+ + K + C+ EY PVCG+DG +Y NEC L E + I + G C
Sbjct: 2 SLGREAKCYNELNGCTLEYRPVCGTDGDTYPNECVLCFENRKRQTSILIQKSGPC 56
>1y1b_A Elastase inhibitor; non-classical, kazal-type, protease
inhibitor, CSH motif, hydrolase inhibitor; NMR
{Synthetic} PDB: 1y1c_A
Length = 48
Score = 53.7 bits (129), Expect = 2e-11
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 43 CKCPS-CSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
CP C+ +Y+PVCGSDGI+Y N C L +C+ I +++ G C
Sbjct: 2 PDCPLICTMQYDPVCGSDGITYGNACMLLGASCRSDTPIELVHKGRC 48
>2jxd_A Serine protease inhibitor kazal-type 2; anti-parallel beta sheet,
beta-bulge, disulfide bond, alpha helix, pyrrolidone
carboxylic acid, secreted; NMR {Homo sapiens}
Length = 62
Score = 51.9 bits (124), Expect = 1e-10
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 44 KCPSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
+ P C +NPVCGSD +Y NEC L ++ + I ++ G C
Sbjct: 18 RLPGCPRHFNPVCGSDMSTYANECTLCMKIREGGHNIKIIRNGPC 62
>2arp_F Follistatin; cystine knot, disulfide rich, EGF domain, kazal
domain, PROT complex, hormone-growth factor complex;
HET: 1PG; 2.00A {Rattus norvegicus}
Length = 152
Score = 53.7 bits (128), Expect = 2e-10
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 18 GETGPCSSNPCRNDGHCVV-KNGKAVCKCP---SCSAEYNPVCGSDGISYENECKLNLEA 73
G C + C C + K K C C S PVCG DG +Y NEC L
Sbjct: 1 GSMETCENVDCGPGKKCRMNKKNKPRCVCAPDCSNITWKGPVCGLDGKTYRNECALLKAR 60
Query: 74 CQHSRQISVLYIGLC 88
C+ ++ V Y G C
Sbjct: 61 CKEQPELEVQYQGKC 75
Score = 50.7 bits (120), Expect = 2e-09
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 22 PCSSNPCRNDGHCVV-KNGKAVC-----KCPSCSAEYNPVCGSDGISYENECKLNLEACQ 75
C C CVV + A C CP S+ +CG+DG++Y + C L C
Sbjct: 78 TCRDVFCPGSSTCVVDQTNNAYCVTCNRICPEPSSSEQSLCGNDGVTYSSACHLRKATCL 137
Query: 76 HSRQISVLYIGLCSK 90
R I + Y G C K
Sbjct: 138 LGRSIGLAYEGKCIK 152
>1tgs_I Pancreatic secretory trypsin inhibitor (kazal type); complex
(proteinase/inhibitor); 1.80A {Sus scrofa} SCOP:
g.68.1.1 PDB: 1cgi_I 1hpt_A
Length = 56
Score = 51.0 bits (122), Expect = 3e-10
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 43 CKCPSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
+ C YNPVCG+DGI+Y NEC L E + + + G C
Sbjct: 11 SEVSGCPKIYNPVCGTDGITYSNECVLCSENKKRQTPVLIQKSGPC 56
>2leo_A Serine protease inhibitor kazal-type 7; esophageal cancer-related
gene 2, hydrol inhibitor; NMR {Homo sapiens}
Length = 66
Score = 51.2 bits (122), Expect = 3e-10
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 40 KAVCKCPSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
K C Y PVCGSD I+Y NEC L E+ + + ++ L+ G C
Sbjct: 18 KYPVVAIPCPITYLPVCGSDYITYGNECHLCTESLKSNGRVQFLHDGSC 66
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 53.8 bits (128), Expect = 5e-10
Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 12/96 (12%)
Query: 18 GETGPCSSNPCRNDGHCVV-KNGKAVC------KCPSCSAEYNPVCGSDGISYENECKLN 70
PC ++ C++ C + +N +C CP+ E+ VC +D ++++ C
Sbjct: 1 APLAPCQNHHCKHGKVCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFF 60
Query: 71 LEACQH-----SRQISVLYIGLCSKGLLREIDKARQ 101
C ++ + YIG C + +
Sbjct: 61 ATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTE 96
>2f3c_I Thrombin inhibitor infestin; serine protease - inhibitor complex,
kazal-type domain, hydrolase/hydrolase inhibitor
complex; 2.50A {Triatoma infestans} SCOP: g.68.1.1 PDB:
1kma_A
Length = 55
Score = 50.3 bits (120), Expect = 5e-10
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 39 GKAVCKCPSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
+ C CP + VCGSDG +Y N C L+ + + ++ G C
Sbjct: 2 EENDCACPR---VLHRVCGSDGNTYSNPCTLDCAKHEGKPDLVQVHEGPC 48
>2erw_A Serine protease inhibitor infestin; kazal type domain, blood
clotting, hydrolase inhibitor; 1.40A {Triatoma
infestans} SCOP: g.68.1.1
Length = 56
Score = 49.9 bits (119), Expect = 7e-10
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 43 CKCP-SCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLCSK 90
+ P +C Y PVCGSDG +Y N C LN A + +++ G C +
Sbjct: 2 VRNPCACFRNYVPVCGSDGKTYGNPCMLNCAAQTKVPGLKLVHEGRCQR 50
>1r0r_I Ovomucoid, omtky3; high resolution, serine protease, protein
inhibitor, hydrolase; 1.10A {Meleagris gallopavo} SCOP:
g.68.1.1 PDB: 1sgr_I 2gkr_I 1cho_I 1omt_A 1omu_A
1ppf_I* 1tur_A 1tus_A 3sgb_I 2ovo_A 4ovo_A 1iy5_A
1cso_I 1ct4_I 2sgf_I 2gkt_I 2gkv_A 2nu0_I 1m8b_A 1m8c_A
...
Length = 51
Score = 47.6 bits (113), Expect = 5e-09
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C+ EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 9 PACTLEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 51
>3hh2_C Follistatin; protein-protein complex, TB domain, cystine knot
motif, TGF- fold, disulfide linked dimer, CLE PAIR of
basic residues, cytokine; HET: CIT; 2.15A {Homo sapiens}
PDB: 2b0u_C* 2p6a_D
Length = 288
Score = 50.8 bits (120), Expect = 6e-09
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 22 PCSSNPCRNDGHCVV-KNGKAVCKCP---SCSAEYNPVCGSDGISYENECKLNLEACQHS 77
C + C C + K K C C S PVCG DG +Y NEC L C+
Sbjct: 65 TCENVDCGPGKKCRMNKKNKPRCVCAPDCSNITWKGPVCGLDGKTYRNECALLKARCKEQ 124
Query: 78 RQISVLYIGLCSK 90
++ V Y G C K
Sbjct: 125 PELEVQYQGRCKK 137
Score = 50.0 bits (118), Expect = 1e-08
Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 6/86 (6%)
Query: 10 QFDSVGYLGETGPCSSNPCRNDGHCVVKNGKAVCKCPSC------SAEYNPVCGSDGISY 63
G + C C C+ +C C S PVC SD +Y
Sbjct: 203 GLAYEGKCIKAKSCEDIQCTGGKKCLWDFKVGRGRCSLCDELCPDSKSDEPVCASDNATY 262
Query: 64 ENECKLNLEACQHSRQISVLYIGLCS 89
+EC + AC + V + G C+
Sbjct: 263 ASECAMKEAACSSGVLLEVKHSGSCN 288
Score = 43.1 bits (100), Expect = 4e-06
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 22 PCSSNPCRNDGHCVV-KNGKAVCK-----CPSCSAEYNPVCGSDGISYENECKLNLEACQ 75
C C CVV + A C CP ++ +CG+DG++Y + C L C
Sbjct: 138 TCRDVFCPGSSTCVVDQTNNAYCVTCNRICPEPASSEQYLCGNDGVTYSSACHLRKATCL 197
Query: 76 HSRQISVLYIGLCS 89
R I + Y G C
Sbjct: 198 LGRSIGLAYEGKCI 211
Score = 37.7 bits (86), Expect = 3e-04
Identities = 4/44 (9%), Positives = 12/44 (27%)
Query: 39 GKAVCKCPSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISV 82
C+ + C S G + + ++ + +
Sbjct: 9 KNGRCQVLYKTELSKEECCSTGRLSTSWTEEDVNDNTLFKWMIF 52
>1bus_A Proteinase inhibitor IIA; HET: PCA; NMR {Bos taurus} SCOP:
g.68.1.1 PDB: 2bus_A*
Length = 57
Score = 46.8 bits (111), Expect = 1e-08
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 46 PSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
C+ E NP CGS+G +Y N+C + +I++ + G C
Sbjct: 15 VYCTRESNPHCGSNGETYGNKCAFCKAVMKSGGKINLKHRGKC 57
>1tbr_R RHODNIIN; complex (serine protease-inhibitor), kazal-type
inhibitor, T complex (serine protease-inhibitor)
complex; 2.60A {Rhodnius prolixus} SCOP: g.68.1.1
g.68.1.1 PDB: 1tbq_R
Length = 103
Score = 46.7 bits (110), Expect = 3e-08
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 27 PCRNDGHCVVKNGKAVCKCPSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIG 86
+DG C + VC+ EY PVCGSD I+Y+N C+L + S + + + G
Sbjct: 41 VKVHDGPCEPDEDEDVCQEC-DGDEYKPVCGSDDITYDNNCRLECASISSSPGVELKHEG 99
Query: 87 LC 88
C
Sbjct: 100 PC 101
Score = 45.5 bits (107), Expect = 1e-07
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 43 CKCPS-CSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P C + VCGSDG +Y N C LN ++ ++ G C
Sbjct: 2 GGEPCACPHALHRVCGSDGETYSNPCTLNCAKFNGKPELVKVHDGPC 48
>1yu6_C Ovomucoid; protein proteinase inhibitor, protease, hydrolase; 1.55A
{Meleagris gallopavo} SCOP: g.68.1.1 PDB: 1z7k_B*
Length = 185
Score = 43.5 bits (101), Expect = 2e-06
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 13 SVGYLGETGPCSSNPCRNDGHCVVKNGKAVCKCPSCSAEYNPVCGSDGISYENECKLNLE 72
S + GE C + + GK + C NPVCG+DG++Y+NEC L
Sbjct: 54 SKEHDGECREAVPMDCSRYPNTTSEEGKVMILCNK---ALNPVCGTDGVTYDNECVLCAH 110
Query: 73 ACQHSRQISVLYIGLC 88
+ + + G C
Sbjct: 111 NLEQGTSVGKKHDGEC 126
Score = 42.3 bits (98), Expect = 4e-06
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 27 PCRNDGHCVVKNGKAVCKCPSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIG 86
C + + GK V C + P+CG+DG+++ +EC L ++ IS + G
Sbjct: 4 DCSRFPNTTNEEGKDVLVCTE---DLRPICGTDGVTH-SECLLCAYNIEYGTNISKEHDG 59
Query: 87 LC 88
C
Sbjct: 60 EC 61
Score = 41.2 bits (95), Expect = 1e-05
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 43 CKCPSCSAEYNPVCGSDGISYENECKLNLEACQHSRQISVLYIGLC 88
P+C+ EY P+CGSD +Y N+C + + +++ + G C
Sbjct: 140 YPKPACTLEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 185
>3qtl_D Kazal-type serine protease inhibitor SPI-1; serine protease
-kazal type serine protease inhibitor comple hydrolase
inhibitor; 2.60A {Carcinoscorpius rotundicauda}
Length = 75
Score = 39.1 bits (91), Expect = 1e-05
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 48 CSAEYNPVCGSDGISYENECKLNLEACQHSRQI 80
C Y PVCG++G Y+NEC LN + +
Sbjct: 3 CPHTYKPVCGANGEVYDNECFLNKAGIEPAESW 35
Score = 34.5 bits (79), Expect = 8e-04
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 28 CRNDGHCVVKNGKAVCKCPSCSAEYNPVCGSDGISYENECKLNLEACQ 75
G +C C+ EY+PVC +G Y N C + +
Sbjct: 29 IEPAESWETCRGHELCPSV-CTEEYDPVC-VEGKIYGNRCMQSHFCGK 74
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 39.6 bits (92), Expect = 6e-05
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 8/73 (10%)
Query: 18 GETGPCSSNPCRNDGHCVVKNGKAVCKC-------PSCSAEYNPVCGSDGISY-ENECKL 69
G + C + C N G C+ + C C P C+ S G +
Sbjct: 183 GPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPP 242
Query: 70 NLEACQHSRQISV 82
N + ++++
Sbjct: 243 NDRPSTRADRLAI 255
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 37.1 bits (85), Expect = 5e-04
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 13 SVGYLGETGPCSSNPCRNDGHCVVKNGKAVCKCP 46
G G + C + C N G C+ + C C
Sbjct: 1010 ERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCS 1043
Score = 36.0 bits (82), Expect = 0.001
Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 8/80 (10%)
Query: 22 PCSSNPCRNDGHCVVKNGKAVCKCP-------SCSAEYNPVCGS-DGISYENECKLNLEA 73
C N G C V + +AVC C CS + G Y
Sbjct: 192 EGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPI 251
Query: 74 CQHSRQISVLYIGLCSKGLL 93
S +I++ + L GL+
Sbjct: 252 QSSSDEITLSFKTLQRNGLM 271
Score = 35.6 bits (81), Expect = 0.002
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 22 PCSSNPCRNDGHCVVKNGKAVCKCP------SCSAEYNPVCGSDGISYENECKLNLEACQ 75
PC SNPC+N+G C + VC C V DG + + +L +
Sbjct: 621 PCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMF-MKIQLPVVMHT 679
Query: 76 HSRQISVLYIGLCSKGLL 93
+ +S+ + + G+L
Sbjct: 680 EAEDVSLRFRSQRAYGIL 697
>1ldt_L LDTI, tryptase inhibitor; complex (hydrolase/inhibitor),
hydrolase, inflammation; 1.90A {Hirudo medicinalis}
SCOP: g.68.1.1 PDB: 1an1_I 2kmo_A 2kmp_A 2kmq_A 2kmr_A
Length = 46
Score = 34.4 bits (79), Expect = 5e-04
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 40 KAVCKCPSCSAEYNPVCGSDGISYENEC 67
K VC CP PVCGSDG +Y N C
Sbjct: 1 KKVCACP---KILKPVCGSDGRTYANSC 25
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 35.8 bits (83), Expect = 0.001
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 13/60 (21%)
Query: 21 GPCSSNPCRNDGHCVVKNGKAVCKCPSCSAEYNPVCGSDGISYENE----CKLNLEACQH 76
PC S PC ++G C C C G +G + E + CQH
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSP---------GYEGSNCELAKNECHPERTDGCQH 56
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular
MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 33.2 bits (76), Expect = 0.006
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 22 PCSSNPCRNDGHCV--VKNGKAVCKCPS------CSAEYNPVCGSDGISYENECKLN 70
C NPC N G C+ + +G C+CP CS+ + + C N
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPN 58
Score = 29.7 bits (67), Expect = 0.13
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 23 CSSNPCRNDGHCVVKNGKAVCKCPS 47
C PC+N G C C+CP
Sbjct: 100 CEVEPCKNGGICTDLVANYSCECPG 124
Score = 29.7 bits (67), Expect = 0.13
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 7/36 (19%)
Query: 19 ETGPCSSNPCRNDGHCVVKNGKAV-------CKCPS 47
GPC+ NPC N G C + CKCP
Sbjct: 51 SAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPR 86
>3pis_D Kazal-type serine protease inhibitor SPI-1; typical non-classical
kazal type inhibitor fold; 2.00A {Carcinoscorpius
rotundicauda}
Length = 42
Score = 30.9 bits (69), Expect = 0.011
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 47 SCSAEYNPVCGSDGISYENECKLN 70
SC Y PVCG++G Y+NEC LN
Sbjct: 2 SCPHTYKPVCGANGEVYDNECFLN 25
>2vh0_B Activated factor XA light chain; serine protease, EGF-like
domain, blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 31.1 bits (71), Expect = 0.031
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 22 PCSSNPCRNDGHCVVKNGKAVCKCPS------CSAEYNPVCGSD 59
C ++PC+N G C G+ C C C +C D
Sbjct: 44 QCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLD 87
Score = 30.3 bits (69), Expect = 0.062
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 23 CSSNPCRNDGHCVVKNGKAVCKCPS 47
CS + D C + VC C
Sbjct: 84 CSLDNGDCDQFCHEEQNSVVCSCAR 108
>2xrc_A Human complement factor I; immune system, hydrolase,
conglutinogen activating factor, S protease, complement
system; HET: NAG; 2.69A {Homo sapiens}
Length = 565
Score = 31.8 bits (72), Expect = 0.035
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 22 PCSSNPCRNDGHCVVKNGKAVCKCPS-CSAEYNPVCGSDGISYENECKLNLEACQHSRQ 79
C C+ C+ G VCK P C VC ++ S+ C+ C H
Sbjct: 24 SCDKVFCQPWQRCI--EGTCVCKLPYQCPKNGTAVCATNRRSFPTYCQQKSLECLHPGT 80
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 30.9 bits (70), Expect = 0.061
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 22 PCSSNPCRNDGHCVVKNGKAVCKCPS------CSAEYNPVCGSD 59
C ++PC+N G C G+ C C C +C D
Sbjct: 44 QCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLD 87
Score = 29.7 bits (67), Expect = 0.12
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 23 CSSNPCRNDGHCVVKNGKAVCKCPS 47
CS + D C + VC C
Sbjct: 84 CSLDNGDCDQFCHEEQNSVVCSCAR 108
Score = 29.3 bits (66), Expect = 0.18
Identities = 7/35 (20%), Positives = 8/35 (22%)
Query: 22 PCSSNPCRNDGHCVVKNGKAVCKCPSCSAEYNPVC 56
P PC K A S A +
Sbjct: 121 PTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITW 155
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 30.3 bits (69), Expect = 0.062
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 23 CSSNPCRNDGHCVVKNGKAVCKCPS 47
C+S+PC ++G C+ K + C+CP+
Sbjct: 86 CASSPCLHNGRCLDKINEFQCECPT 110
Score = 30.3 bits (69), Expect = 0.069
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 23 CSSNPCRNDGHCVVKNGKAVCKCP 46
C SNPC+ND C+ + G+ C C
Sbjct: 48 CVSNPCQNDATCLDQIGEFQCICM 71
Score = 28.3 bits (64), Expect = 0.36
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 23 CSSNPCRNDGHCVVKNGKAVCKCPS 47
+NPC + G C+ G C+C
Sbjct: 10 LGANPCEHAGKCINTLGSFECQCLQ 34
>3tjq_A Serine protease HTRA1; hydrolase; 2.00A {Homo sapiens}
Length = 140
Score = 30.3 bits (67), Expect = 0.068
Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 23 CSSNPCRNDGHCVVKNGKAVCKCPSCSAEYNPVCGSDGISYENECKLNLEACQHSRQ--- 79
+ +C C S PVCGSD +Y N C+L + + R
Sbjct: 72 VVPFGVPASATVRRRAQAGLCVCAS----SEPVCGSDANTYANLCQLRAASRRSERLHRP 127
Query: 80 -ISVLYIGLCSK 90
+ VL G C
Sbjct: 128 PVIVLQRGACGN 139
>2wcy_A Complement component C7; immune system, disulfide bond, immune
response, factor I module, FIM, EGF, MAC, FOLN, sushi,
fimac, kazal; NMR {Homo sapiens}
Length = 155
Score = 30.5 bits (68), Expect = 0.068
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 28 CRNDGHCVVKNGKAVCKCPS-CSAEYNPVCGSDGISYE--NECKLNLEACQHSRQISVLY 84
C G C ++ K VC+ S C E +C + +EC+ C+ + ISV
Sbjct: 88 CPLWGKCDAESSKCVCREASECEEEGFSICVEVNGKEQTMSECEAGALRCRG-QSISVTS 146
Query: 85 IGLCS 89
I C+
Sbjct: 147 IRPCA 151
Score = 26.7 bits (58), Expect = 1.3
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 36 VKNGKAVCKCPSCSAEYNPVCGSDGISYENE----CKLNLEACQHSRQISVLYIGLCS 89
++N + VCK P VC D S CK+++ CQ R ++ C+
Sbjct: 20 LQNSRCVCKMPYECGPSLDVCAQDERSKRILPLTVCKMHVLHCQG-RNYTLTGRDSCT 76
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 28.6 bits (65), Expect = 0.070
Identities = 11/25 (44%), Positives = 11/25 (44%)
Query: 23 CSSNPCRNDGHCVVKNGKAVCKCPS 47
C SNPC N G C C CP
Sbjct: 6 CESNPCLNGGSCKDDINSYECWCPF 30
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 29.8 bits (67), Expect = 0.075
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 22 PCSSNPCRNDGHCV--VKNGKAVCKCP 46
CS C N G C + VC+CP
Sbjct: 50 SCSEPRCFNGGTCQQALYFSDFVCQCP 76
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 30.0 bits (68), Expect = 0.10
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 22 PCSSNPCRNDGHCVVKNGKAVCKCP 46
C+S+PC+N G C + +C C
Sbjct: 49 QCASSPCQNGGSCKDQLQSYICFCL 73
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 29.6 bits (67), Expect = 0.13
Identities = 9/26 (34%), Positives = 9/26 (34%)
Query: 22 PCSSNPCRNDGHCVVKNGKAVCKCPS 47
C NPC N G C C C
Sbjct: 50 QCEPNPCLNGGLCKDDINSYECWCQV 75
Score = 26.9 bits (60), Expect = 1.2
Identities = 4/25 (16%), Positives = 7/25 (28%)
Query: 23 CSSNPCRNDGHCVVKNGKAVCKCPS 47
N + K +C C +
Sbjct: 89 NIKNGRCKQFCKTGADSKVLCSCTT 113
>1h0z_A Serine protease inhibitor kazal-type 5, contains hemofiltrate
peptide HF6478, hemofiltrate...; serine proteinase
inhibitor; NMR {Homo sapiens} SCOP: g.68.1.2
Length = 68
Score = 27.9 bits (61), Expect = 0.21
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 47 SCSAEYNPVCGSDGISYENECKL 69
+C+ E +P+ G DG + N C +
Sbjct: 25 ACTRENDPIQGPDGKVHGNTCSM 47
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 29.1 bits (65), Expect = 0.26
Identities = 7/49 (14%), Positives = 8/49 (16%), Gaps = 1/49 (2%)
Query: 20 TGPCSSNPCRNDGHCVVKNGKAVCKCP-SCSAEYNPVCGSDGISYENEC 67
N CRN V P C +
Sbjct: 56 AVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDG 104
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM;
2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 28.8 bits (64), Expect = 0.36
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 22 PCSSNPCRNDGHCV 35
PC PC++ G CV
Sbjct: 4 PCCYYPCQHQGICV 17
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 28.1 bits (63), Expect = 0.38
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 23 CSSNPCRNDGHCVVKNGKAVCKCPS 47
CS + +C+ + G C C
Sbjct: 57 CSLDNGGCTHYCLEEVGWRRCSCAP 81
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 28.2 bits (63), Expect = 0.42
Identities = 8/27 (29%), Positives = 9/27 (33%)
Query: 19 ETGPCSSNPCRNDGHCVVKNGKAVCKC 45
T C C G C+ G C C
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSC 144
Score = 25.1 bits (55), Expect = 4.8
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 30 NDGHCVVKNGKAVCK---CPSCSAEYNPVCGSDGISYENEC 67
ND HC+ K A+C C S C +Y C
Sbjct: 105 NDEHCLKKKH-ALCYTASCQDMSCSKQGECLETIGNYTCSC 144
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS
HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 28.5 bits (63), Expect = 0.50
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 22 PCSSNPCRNDGHCV 35
PC SNPC+N G C+
Sbjct: 3 PCCSNPCQNRGECM 16
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 27.5 bits (61), Expect = 0.75
Identities = 8/27 (29%), Positives = 8/27 (29%)
Query: 19 ETGPCSSNPCRNDGHCVVKNGKAVCKC 45
T C C G CV C C
Sbjct: 118 YTASCQPWSCSGHGECVEIINNYTCNC 144
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 27.9 bits (61), Expect = 0.80
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 19 ETGPCSSNPCRNDGHCVVKNGKAVCKCP-SCSAEYNPVCGSDGISYE-----NECKLNLE 72
+ C + C + C K VC P C N + S N C++
Sbjct: 837 KKESCGYDTCYDWEKCSASTSKCVCLLPPQCFKGGNQLYCVKMGSSTSEKTLNICEVGTI 896
Query: 73 ACQHSRQISVLYIGLCS 89
C +R++ +L+ G C
Sbjct: 897 RCA-NRKMEILHPGKCL 912
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG
FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB:
2hor_A* 1lk9_A*
Length = 427
Score = 27.2 bits (60), Expect = 1.1
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 10/59 (16%)
Query: 19 ETGPCSSNPCRNDGHC----VVKNGKAVCKCPSCSAEYNPVCGSDGISYENECKLNLEA 73
E ++ C G ++ G C+C +C G D C ++ +
Sbjct: 11 EAEAVANINCSEHGRAFLDGIISEGSPKCECNTCYT------GPDCSEKIQGCSADVAS 63
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 27.0 bits (60), Expect = 1.1
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 19 ETGPCSSNPCRNDGHCVVKNGKAVCKCP 46
T C++ C G CV CKC
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCD 145
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 26.7 bits (58), Expect = 2.0
Identities = 6/38 (15%), Positives = 8/38 (21%)
Query: 11 FDSVGYLGETGPCSSNPCRNDGHCVVKNGKAVCKCPSC 48
C N C+ C CP+
Sbjct: 338 LHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTG 375
>3pg6_A E3 ubiquitin-protein ligase DTX3L; DNA-damage, metal-binding,
nucleus, phosphorylation, chromatin regulator, UBL
conjugation pathway, zinc-finger; HET: CIT; 1.70A {Homo
sapiens}
Length = 159
Score = 26.4 bits (58), Expect = 2.1
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 13/73 (17%)
Query: 40 KAVCKCPSCSAEYNPVCGS--DGISYENECKLNLEACQHSRQISVLYIGLCSKGLLREID 97
+ P S Y G+ +G + +L + I + Y +
Sbjct: 10 HSSGLVPRGSTSYGIQKGNQPEGSMVFTVSRDSLPGYESFGTIVITY----------SMK 59
Query: 98 KARQENEIP-PGK 109
Q E P PGK
Sbjct: 60 AGIQTEEHPNPGK 72
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 26.2 bits (57), Expect = 2.3
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 15 GYLGETGPCSSNPCRNDGHCVVKNGKAVCKCP 46
G C N+G C G+ C CP
Sbjct: 192 QKWGPECNHLCTACMNNGVCHEDTGE--CICP 221
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1
c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Length = 768
Score = 26.5 bits (57), Expect = 2.6
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 35 VVKNGKAVCKCPSCSAEYNPVC 56
V VC P C + NP C
Sbjct: 48 VAPYNPVVCSGPHCKSILNPYC 69
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 26.0 bits (57), Expect = 2.9
Identities = 7/66 (10%), Positives = 14/66 (21%), Gaps = 9/66 (13%)
Query: 19 ETGPCSSNPCRNDGHCVVKNGKAVCKCPS--------CSAEYNPVCGSDGISYENECKLN 70
+ + + C S E + V + + C
Sbjct: 265 PSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNA 324
Query: 71 LEACQH 76
+ CQ
Sbjct: 325 V-RCQF 329
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural
genomics, PSI-2, protein structure initiative; NMR
{Shigella flexneri}
Length = 108
Score = 25.4 bits (55), Expect = 3.1
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 90 KGLLREIDKARQENEI 105
K RE + R+ N+I
Sbjct: 74 KEPERENRELRRSNDI 89
>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain,
kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP:
g.3.11.1 g.14.1.1 PDB: 2i9b_A*
Length = 145
Score = 25.7 bits (55), Expect = 3.5
Identities = 11/47 (23%), Positives = 13/47 (27%), Gaps = 3/47 (6%)
Query: 23 CSSNPCRNDGHCVVKN---GKAVCKCPSCSAEYNPVCGSDGISYENE 66
S+ C N G CV C CP + YE
Sbjct: 10 PSNCDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTCYEGN 56
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 25.4 bits (56), Expect = 3.9
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 7/58 (12%)
Query: 23 CSSNPCRNDGHCVVKNGKAVCKCPSCSAEYNPVCGSDGISYE--NECKLNLEACQHSR 78
PC K +C + P + E +EC+ CQ +
Sbjct: 84 AWGTPCEMCPAVNTSEYKILC---PGGEGFRP--NPITVILEDIDECQELPGLCQGGK 136
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 25.9 bits (56), Expect = 4.0
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 10/56 (17%)
Query: 22 PCSSNPCRNDGHCVVK-NGKAVCKCPSCSAEYNPVCGSDGISYENECKLNLEACQH 76
PC+ + C+VK +G C CP + V D +S C H
Sbjct: 581 PCAQDNGGCSHICLVKGDGTTRCSCP-----MHLVLLQDELS----CGGTKHHHHH 627
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 25.6 bits (55), Expect = 5.0
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 20 TGPCSSNPCRNDGHCVVKNGKAVCKCPS 47
+ PC+ C+ + C CP
Sbjct: 578 SNPCAEENGGCSHLCLYRPQGLRCACPI 605
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed
with SEC22, protein transport; 2.30A {Homo sapiens}
PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Length = 769
Score = 25.3 bits (54), Expect = 5.6
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 35 VVKNGKAVCKCPSCSAEYNPVC 56
++ +C +C A NP+C
Sbjct: 57 PIQYEPVLCSRTTCRAVLNPLC 78
>3p5b_L Low density lipoprotein receptor variant; B-propellor,
convertase, hydrolase-lipid binding P complex; 3.30A
{Homo sapiens} PDB: 3p5c_L
Length = 400
Score = 25.2 bits (54), Expect = 5.9
Identities = 10/55 (18%), Positives = 13/55 (23%), Gaps = 5/55 (9%)
Query: 22 PCSSNPCRNDGHCVVKNGKAVCKCPSCSAEYNPVCGSDGISYENECKLNLEACQH 76
C N C C CP D +EC+ + C
Sbjct: 2 ECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED----IDECQDP-DTCSQ 51
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 25.2 bits (54), Expect = 6.7
Identities = 6/27 (22%), Positives = 8/27 (29%)
Query: 22 PCSSNPCRNDGHCVVKNGKAVCKCPSC 48
C N C+ C CP+
Sbjct: 306 RCGDNNGGCTHLCLPSGQNYTCACPTG 332
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 24.7 bits (53), Expect = 8.1
Identities = 8/43 (18%), Positives = 12/43 (27%), Gaps = 7/43 (16%)
Query: 21 GPCSSNPCRNDGH-------CVVKNGKAVCKCPSCSAEYNPVC 56
P + C N+ H C C+C + C
Sbjct: 1 APLAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQC 43
>3s8k_A Latex serine proteinase inhibitor; kunitz-STI fold, protease
inhibitor, hydrolase inhibitor; HET: NAG FUC; 1.70A
{Carica papaya} PDB: 3s8j_A*
Length = 184
Score = 24.6 bits (53), Expect = 8.4
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 45 CPSCSAEYNPVCGSDGISYENE 66
CPS C + I ++
Sbjct: 142 CPSYPRTRLIPCNNVDIFFDKY 163
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 24.4 bits (53), Expect = 9.5
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 22 PCSSNPCRNDGHCVVKNGKAVCKCPS 47
PCRN G C+ GK+ CKC
Sbjct: 245 SKCPQPCRNGGKCI---GKSKCKCSK 267
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.429
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,654,744
Number of extensions: 86739
Number of successful extensions: 504
Number of sequences better than 10.0: 1
Number of HSP's gapped: 471
Number of HSP's successfully gapped: 207
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)