BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11289
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 252 bits (644), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 115/141 (81%), Positives = 130/141 (92%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+SYFVTDYDPTIEDSYTKQCVIDD ARLDILDTAGQEEF AMREQYMR+GEGFLLVFS
Sbjct: 26 IQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFS 85
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
VTDR SFEEIYKF RQILRVKDRDEFPM+++GNKADLDHQRQV+ + Q +ARQL++ Y+
Sbjct: 86 VTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYM 145
Query: 123 ECSAKVRINVDQAFHELVRIV 143
E SAK+R+NVDQAFHELVR++
Sbjct: 146 EASAKIRMNVDQAFHELVRVI 166
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 202 bits (514), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 95/147 (64%), Positives = 115/147 (78%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+SYFV+DYDPTIEDSYTK C +D IPARLDILDTAGQEEF AMREQYMR+G GFLLVF+
Sbjct: 30 IQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFA 89
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ DR SF E+ K QILRVKDRD+FP+++VGNKADL+ QRQV +A + Y
Sbjct: 90 INDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYF 149
Query: 123 ECSAKVRINVDQAFHELVRIVLLHTKQ 149
E SAK+R+NVD+AF +LVR V + +Q
Sbjct: 150 EASAKLRLNVDEAFEQLVRAVRKYQEQ 176
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 177 bits (449), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/138 (61%), Positives = 108/138 (78%), Gaps = 1/138 (0%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
FV DYDPTIEDSY K ID+ A LD+LDTAGQEEFSAMREQYMR+G+GFL+V+SVTD+
Sbjct: 38 FVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDK 97
Query: 67 NSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSA 126
SFE + +FH+ ILRVKDR+ FPM++V NK DL H R+V+ + +A + IPYIE SA
Sbjct: 98 ASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSA 157
Query: 127 K-VRINVDQAFHELVRIV 143
K +NVD+ FH+LVR++
Sbjct: 158 KDPPLNVDKTFHDLVRVI 175
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 176 bits (447), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 85/138 (61%), Positives = 108/138 (78%), Gaps = 1/138 (0%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
FV DYDPTIEDSY K ID+ A LD+LDTAGQEEFSAMREQYMR+G+GFL+V+SVTD+
Sbjct: 43 FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDK 102
Query: 67 NSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSA 126
SFE + +FH+ ILRVKDR+ FPM++V NK DL H R+V+ + +A + IPYIE SA
Sbjct: 103 ASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSA 162
Query: 127 K-VRINVDQAFHELVRIV 143
K +NVD+ FH+LVR++
Sbjct: 163 KDPPLNVDKTFHDLVRVI 180
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 175 bits (444), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 84/138 (60%), Positives = 108/138 (78%), Gaps = 1/138 (0%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
FV +YDPTIEDSY K ID+ A LD+LDTAGQEEFSAMREQYMR+G+GFL+V+SVTD+
Sbjct: 43 FVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDK 102
Query: 67 NSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSA 126
SFE + +FH+ ILRVKDR+ FPM++V NK DL H R+V+ + +A + IPYIE SA
Sbjct: 103 ASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSA 162
Query: 127 K-VRINVDQAFHELVRIV 143
K +NVD+ FH+LVR++
Sbjct: 163 KDPPLNVDKTFHDLVRVI 180
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 174 bits (442), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/138 (60%), Positives = 108/138 (78%), Gaps = 1/138 (0%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
FV +YDPTIEDSY K ID+ A LD+LDTAGQEEFSAMREQYMR+G+GFL+V+SVTD+
Sbjct: 43 FVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDK 102
Query: 67 NSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSA 126
SFE + +FH+ ILRVKDR+ FPM++V NK DL H R+V+ + +A + IPYIE SA
Sbjct: 103 ASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSA 162
Query: 127 K-VRINVDQAFHELVRIV 143
K +NVD+ FH+LVR++
Sbjct: 163 KDPPLNVDKTFHDLVRVI 180
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 170 bits (431), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 108/144 (75%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK+DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 170 bits (430), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 107/144 (74%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 31 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 90
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 91 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 149
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 150 ETSAKTRQGVEDAFYTLVREIRQH 173
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 169 bits (429), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 107/144 (74%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 169 bits (429), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 107/144 (74%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 169 bits (429), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 107/144 (74%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 169 bits (429), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 107/144 (74%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 169 bits (429), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 107/144 (74%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 169 bits (429), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 107/144 (74%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 169 bits (429), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 107/144 (74%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 169 bits (428), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 107/144 (74%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 169 bits (428), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 107/144 (74%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AGRTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 169 bits (428), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 107/144 (74%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 29 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 88
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 89 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 147
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 148 ETSAKTRQGVEDAFYTLVREIRQH 171
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 169 bits (428), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 107/144 (74%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 29 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 88
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 89 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 147
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 148 ETSAKTRQGVEDAFYTLVREIRQH 171
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 169 bits (428), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 107/144 (74%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 169 bits (427), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 106/144 (73%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV YDPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 169 bits (427), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 106/144 (73%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV YDPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 168 bits (426), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 107/144 (74%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 168 bits (426), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/139 (60%), Positives = 105/139 (75%), Gaps = 1/139 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVR 141
E SAK R V+ AF+ LVR
Sbjct: 143 ETSAKTRQGVEDAFYTLVR 161
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 168 bits (425), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/144 (58%), Positives = 106/144 (73%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDT GQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 168 bits (425), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/144 (58%), Positives = 107/144 (74%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAGQEE+SAMR++YMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 168 bits (425), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/144 (58%), Positives = 107/144 (74%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGN+ DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 168 bits (425), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/144 (58%), Positives = 107/144 (74%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDP+IEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 168 bits (425), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/144 (58%), Positives = 107/144 (74%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAG+EE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 168 bits (425), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/144 (58%), Positives = 107/144 (74%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDP+IEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 30 IQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 89
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 90 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 148
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 149 ETSAKTRQGVEDAFYTLVREIRQH 172
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 168 bits (425), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/144 (58%), Positives = 107/144 (74%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIE+SY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 167 bits (424), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/144 (58%), Positives = 107/144 (74%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV ++DPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 167 bits (424), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 106/144 (73%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAGQEE SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 167 bits (424), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/144 (58%), Positives = 106/144 (73%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDT GQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 167 bits (424), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/147 (56%), Positives = 109/147 (74%), Gaps = 1/147 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 25 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 84
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+ + QI RVKD ++ PM++VGNK+DL R V + AQ++AR IP+I
Sbjct: 85 INNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP-SRTVDTKQAQDLARSYGIPFI 143
Query: 123 ECSAKVRINVDQAFHELVRIVLLHTKQ 149
E SAK R VD AF+ LVR + H ++
Sbjct: 144 ETSAKTRQGVDDAFYTLVREIRKHKEK 170
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 167 bits (423), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/144 (58%), Positives = 106/144 (73%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAG EE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 167 bits (423), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/147 (56%), Positives = 109/147 (74%), Gaps = 1/147 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 25 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 84
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+ + QI RVKD ++ PM++VGNK+DL R V + AQ++AR IP+I
Sbjct: 85 INNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP-SRTVDTKQAQDLARSYGIPFI 143
Query: 123 ECSAKVRINVDQAFHELVRIVLLHTKQ 149
E SAK R VD AF+ LVR + H ++
Sbjct: 144 ETSAKTRQGVDDAFYTLVREIRKHKEK 170
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 167 bits (423), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/147 (56%), Positives = 109/147 (74%), Gaps = 1/147 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 25 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 84
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+ + QI RVKD ++ PM++VGNK+DL R V + AQ++AR IP+I
Sbjct: 85 INNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP-SRTVDTKQAQDLARSYGIPFI 143
Query: 123 ECSAKVRINVDQAFHELVRIVLLHTKQ 149
E SAK R VD AF+ LVR + H ++
Sbjct: 144 ETSAKTRQGVDDAFYTLVREIRKHKEK 170
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 167 bits (423), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/144 (58%), Positives = 106/144 (73%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAG EE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 167 bits (422), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/144 (58%), Positives = 106/144 (73%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTA QEE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 167 bits (422), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/144 (58%), Positives = 106/144 (73%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAG EE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 167 bits (422), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/144 (58%), Positives = 106/144 (73%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTA QEE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 167 bits (422), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/144 (58%), Positives = 107/144 (74%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV + DPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK+DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 166 bits (421), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 84/144 (58%), Positives = 106/144 (73%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAG EE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 166 bits (421), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 84/144 (58%), Positives = 106/144 (73%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAG EE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 166 bits (421), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 84/144 (58%), Positives = 106/144 (73%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAG EE+SAMR+QYMR+GEGFL VF+
Sbjct: 29 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFA 88
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 89 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 147
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 148 ETSAKTRQGVEDAFYTLVREIRQH 171
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 166 bits (420), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 83/144 (57%), Positives = 106/144 (73%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 25 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 84
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+ + QI RVKD ++ PM++VGNK DL R V + AQ++AR IP+I
Sbjct: 85 INNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFI 143
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R VD AF+ LVR + H
Sbjct: 144 ETSAKTRQGVDDAFYTLVREIRKH 167
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 166 bits (420), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 84/144 (58%), Positives = 106/144 (73%), Gaps = 1/144 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAG EE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIVLLH 146
E SAK R V+ AF+ LVR + H
Sbjct: 143 ETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 164 bits (416), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/147 (55%), Positives = 107/147 (72%), Gaps = 1/147 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAG EE+SAMR+QYMR+GEGFL VF+
Sbjct: 42 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFA 101
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+ + QI RVKD ++ PM++VGNK DL R V + AQ++AR IP+I
Sbjct: 102 INNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFI 160
Query: 123 ECSAKVRINVDQAFHELVRIVLLHTKQ 149
E SAK R VD AF+ LVR + H ++
Sbjct: 161 ETSAKTRQGVDDAFYTLVREIRKHKEK 187
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 157 bits (397), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 79/139 (56%), Positives = 100/139 (71%), Gaps = 1/139 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 42 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 101
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SF +I + QI RVKD D+ PM++VGNK DL R V + A +A+ IP+I
Sbjct: 102 INNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFI 160
Query: 123 ECSAKVRINVDQAFHELVR 141
E SAK R V+ AF+ LVR
Sbjct: 161 ETSAKTRQGVEDAFYTLVR 179
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 151 bits (382), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/135 (53%), Positives = 97/135 (71%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
FV DY+PT DSY K+ V+D ++DILDTAGQE+++A+R+ Y RSGEGFL VFS+T+
Sbjct: 43 FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM 102
Query: 67 NSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSA 126
SF F QILRVK+ + P L+VGNK+DL+ +RQVS +A+N A Q + Y+E SA
Sbjct: 103 ESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSA 162
Query: 127 KVRINVDQAFHELVR 141
K R NVD+ F +L+R
Sbjct: 163 KTRANVDKVFFDLMR 177
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 151 bits (382), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/135 (53%), Positives = 97/135 (71%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
FV DY+PT DSY K+ V+D ++DILDTAGQE+++A+R+ Y RSGEGFL VFS+T+
Sbjct: 31 FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM 90
Query: 67 NSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSA 126
SF F QILRVK+ + P L+VGNK+DL+ +RQVS +A+N A Q + Y+E SA
Sbjct: 91 ESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSA 150
Query: 127 KVRINVDQAFHELVR 141
K R NVD+ F +L+R
Sbjct: 151 KTRANVDKVFFDLMR 165
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 151 bits (381), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/135 (53%), Positives = 97/135 (71%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
FV DY+PT DSY K+ V+D ++DILDTAGQE+++A+R+ Y RSGEGFL VFS+T+
Sbjct: 39 FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM 98
Query: 67 NSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSA 126
SF F QILRVK+ + P L+VGNK+DL+ +RQVS +A+N A Q + Y+E SA
Sbjct: 99 ESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSA 158
Query: 127 KVRINVDQAFHELVR 141
K R NVD+ F +L+R
Sbjct: 159 KTRANVDKVFFDLMR 173
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 150 bits (380), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/135 (53%), Positives = 97/135 (71%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
FV DY+PT DSY K+ V+D ++DILDTAGQE+++A+R+ Y RSGEGFL VFS+T+
Sbjct: 29 FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM 88
Query: 67 NSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSA 126
SF F QILRVK+ + P L+VGNK+DL+ +RQVS +A+N A Q + Y+E SA
Sbjct: 89 ESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSA 148
Query: 127 KVRINVDQAFHELVR 141
K R NVD+ F +L+R
Sbjct: 149 KTRANVDKVFFDLMR 163
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 148 bits (374), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/135 (52%), Positives = 96/135 (71%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
FV DY+PT DSY K+ V+D ++DILDTAG E+++A+R+ Y RSGEGFL VFS+T+
Sbjct: 31 FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEM 90
Query: 67 NSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSA 126
SF F QILRVK+ + P L+VGNK+DL+ +RQVS +A+N A Q + Y+E SA
Sbjct: 91 ESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSA 150
Query: 127 KVRINVDQAFHELVR 141
K R NVD+ F +L+R
Sbjct: 151 KTRANVDKVFFDLMR 165
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 147 bits (372), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 100/140 (71%), Gaps = 1/140 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
++ FV YDPTIEDSY KQ +D L+ILDTAG E+F+AMR+ YM++G+GF LV+S
Sbjct: 24 VQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYS 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQL-RIPY 121
+T +++F ++ QILRVKD D+ PM++VGNK DL+ +R V QN+ARQ +
Sbjct: 84 ITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAF 143
Query: 122 IECSAKVRINVDQAFHELVR 141
+E SAK +INV++ F++LVR
Sbjct: 144 LESSAKSKINVNEIFYDLVR 163
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 147 bits (372), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 100/140 (71%), Gaps = 1/140 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
++ FV YDPTIEDSY KQ +D L+ILDTAG E+F+AMR+ YM++G+GF LV+S
Sbjct: 26 VQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYS 85
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQL-RIPY 121
+T +++F ++ QILRVKD D+ PM++VGNK DL+ +R V QN+ARQ +
Sbjct: 86 ITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAF 145
Query: 122 IECSAKVRINVDQAFHELVR 141
+E SAK +INV++ F++LVR
Sbjct: 146 LESSAKSKINVNEIFYDLVR 165
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 146 bits (368), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 70/136 (51%), Positives = 99/136 (72%), Gaps = 1/136 (0%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
FV DY+PT DSY K+ V+D ++DILDTAG E+++A+R+ Y RSGEGFLLVFS+T+
Sbjct: 32 FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEH 91
Query: 67 NSFEEIYKFHRQILRVK-DRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
SF +F QILRVK + D+ P+L+VGNK+DL+ +RQV +A++ A + + Y+E S
Sbjct: 92 ESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETS 151
Query: 126 AKVRINVDQAFHELVR 141
AK R NVD+ F +L+R
Sbjct: 152 AKTRANVDKVFFDLMR 167
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 145 bits (367), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 70/136 (51%), Positives = 99/136 (72%), Gaps = 1/136 (0%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
FV DY+PT DSY K+ V+D ++DILDTAG E+++A+R+ Y RSGEGFLLVFS+T+
Sbjct: 28 FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEH 87
Query: 67 NSFEEIYKFHRQILRVK-DRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
SF +F QILRVK + D+ P+L+VGNK+DL+ +RQV +A++ A + + Y+E S
Sbjct: 88 ESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETS 147
Query: 126 AKVRINVDQAFHELVR 141
AK R NVD+ F +L+R
Sbjct: 148 AKTRANVDKVFFDLMR 163
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 145 bits (367), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 101/140 (72%), Gaps = 1/140 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
++ FV +YDPTIEDSY KQ +D L+ILDTAG E+F+AMR+ YM++G+GF LV+S
Sbjct: 24 VQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYS 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQL-RIPY 121
+T +++F ++ QILRVKD ++ PM++VGNK DL+ +R V QN+ARQ +
Sbjct: 84 ITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAF 143
Query: 122 IECSAKVRINVDQAFHELVR 141
+E SAK +INV++ F++LVR
Sbjct: 144 LESSAKSKINVNEIFYDLVR 163
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 145 bits (366), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 100/140 (71%), Gaps = 1/140 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
++ FV YDPTIEDSY KQ +D L+ILDTAG E+F+AMR+ YM++G+GF LV+S
Sbjct: 24 VQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYS 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQL-RIPY 121
+T +++F ++ QILRVKD ++ PM++VGNK DL+ +R V QN+ARQ +
Sbjct: 84 ITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAF 143
Query: 122 IECSAKVRINVDQAFHELVR 141
+E SAK +INV++ F++LVR
Sbjct: 144 LESSAKSKINVNEIFYDLVR 163
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 125 bits (313), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 100/139 (71%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
+ F+ YDPTIED Y K+ +D P+ L+ILDTAG E+F++MR+ Y+++G+GF+LV+S
Sbjct: 24 VTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYS 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ ++ SF++I QI+RVK ++ P+++VGNK DL+ +R+VSS + + +A + P++
Sbjct: 84 LVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFM 143
Query: 123 ECSAKVRINVDQAFHELVR 141
E SAK + VD+ F E+VR
Sbjct: 144 ETSAKSKTMVDELFAEIVR 162
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 89/138 (64%), Gaps = 2/138 (1%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F+ +YDPT+E +Y Q IDD ++ILDTAGQE+ + RE +MR GEGF+LV+ +TDR
Sbjct: 53 FIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDR 111
Query: 67 NSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSA 126
SFEE+ + +K +++VGNKADLDH RQVS+ + + +A +L + ECSA
Sbjct: 112 GSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSA 171
Query: 127 -KVRINVDQAFHELVRIV 143
N+ + F+EL R V
Sbjct: 172 CTGEGNITEIFYELCREV 189
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 80/141 (56%), Gaps = 1/141 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
++ F Y PT+ED+Y + D L I DT G +F AM+ + G F+LV+S
Sbjct: 24 VKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 83
Query: 63 VTDRNSFEEIYKFHRQILRVK-DRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPY 121
+T R S EE+ + QI +K D + P+++VGNK D R+V S +A+ +AR + +
Sbjct: 84 ITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAF 143
Query: 122 IECSAKVRINVDQAFHELVRI 142
+E SAK+ NV + F EL+ +
Sbjct: 144 METSAKLNHNVKELFQELLNL 164
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 100 bits (248), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 85/141 (60%), Gaps = 2/141 (1%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
++ F Y PTIED+Y + D L I DT G +F AM+ + G F+LVFS
Sbjct: 29 VKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFS 88
Query: 63 VTDRNSFEEIYKFHRQILRVKDR-DEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPY 121
VT + S EE+ ++ I+++K ++ P+++VGNK D + QR+V + +AQ VA++ + +
Sbjct: 89 VTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD-ETQREVDTREAQAVAQEWKCAF 147
Query: 122 IECSAKVRINVDQAFHELVRI 142
+E SAK+ NV + F EL+ +
Sbjct: 148 METSAKMNYNVKELFQELLTL 168
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 75/125 (60%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
+E FV YDPTIE+++TK ++ L ++DTAGQ+E+S + Y G++LV+S
Sbjct: 22 VEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYS 81
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
VT SFE I H ++L + + + P+++VGNK DL +R +S + + +A ++
Sbjct: 82 VTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFL 141
Query: 123 ECSAK 127
E SAK
Sbjct: 142 ESSAK 146
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 75/125 (60%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
+E FV YDPTIE+++TK ++ L ++DTAGQ+E+S + Y G++LV+S
Sbjct: 27 VEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYS 86
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
VT SFE I H ++L + + + P+++VGNK DL +R +S + + +A ++
Sbjct: 87 VTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFL 146
Query: 123 ECSAK 127
E SAK
Sbjct: 147 ESSAK 151
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 75/125 (60%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
+E FV YDPTIE+++TK ++ L ++DTAGQ+E+S + Y G++LV+S
Sbjct: 27 VEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYS 86
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
VT SFE I H ++L + + + P+++VGNK DL +R +S + + +A ++
Sbjct: 87 VTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFL 146
Query: 123 ECSAK 127
E SAK
Sbjct: 147 ESSAK 151
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 74/125 (59%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
+E FV DPTIE+++TK ++ L ++DTAGQ+E+S + Y G++LV+S
Sbjct: 25 VEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYS 84
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
VT SFE I H ++L + + + P+++VGNK DL +R +S + + +A ++
Sbjct: 85 VTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFL 144
Query: 123 ECSAK 127
E SAK
Sbjct: 145 ESSAK 149
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 76/125 (60%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
+E F YDPT+E++Y+K + L ++DTAGQ+E+S + ++ G++LV+S
Sbjct: 45 VEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYS 104
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
VT +SF+ I ++++ + P+++VGNKADL +R+V +++ + +A ++
Sbjct: 105 VTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFM 164
Query: 123 ECSAK 127
E SA+
Sbjct: 165 ESSAR 169
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 73/121 (60%), Gaps = 2/121 (1%)
Query: 34 ILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMV 93
I DTAGQE + A+ Y R G LLV+ +T +NSFE I K+ ++ LR +L+V
Sbjct: 61 IWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKE-LRDNADSNIVILLV 119
Query: 94 GNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQCKNS 153
GNK+DL H R ++ DA A++ ++ +IE SA NV+ AFH+L+ + + +Q K +
Sbjct: 120 GNKSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEI-YNVRQKKQA 178
Query: 154 T 154
T
Sbjct: 179 T 179
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 81/147 (55%), Gaps = 6/147 (4%)
Query: 3 IESYFVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVF 61
+ F Y TI D TK+ ++DD + I DTAGQE F ++ + R + +LVF
Sbjct: 29 VNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF 88
Query: 62 SVTDRNSFEEIYKFHRQIL---RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVA-RQL 117
VT N+F+ + + + L +D + FP +++GNK DL++ RQV++ AQ +
Sbjct: 89 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKN 147
Query: 118 RIPYIECSAKVRINVDQAFHELVRIVL 144
IPY E SAK INV+QAF + R L
Sbjct: 148 NIPYFETSAKEAINVEQAFQTIARNAL 174
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 81/147 (55%), Gaps = 6/147 (4%)
Query: 3 IESYFVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVF 61
+ F Y TI D TK+ ++DD + I DTAGQE F ++ + R + +LVF
Sbjct: 29 VNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF 88
Query: 62 SVTDRNSFEEIYKFHRQIL---RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVA-RQL 117
VT N+F+ + + + L +D + FP +++GNK DL++ RQV++ AQ +
Sbjct: 89 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKN 147
Query: 118 RIPYIECSAKVRINVDQAFHELVRIVL 144
IPY E SAK INV+QAF + R L
Sbjct: 148 NIPYFETSAKEAINVEQAFQTIARNAL 174
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 80/147 (54%), Gaps = 6/147 (4%)
Query: 3 IESYFVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVF 61
+ F Y TI D TK+ ++DD + I DTAGQE F ++ + R + +LVF
Sbjct: 29 VNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF 88
Query: 62 SVTDRNSFEEIYKFHRQIL---RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVA-RQL 117
VT N+F+ + + + L +D + FP +++GNK D ++ RQV++ AQ +
Sbjct: 89 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDFEN-RQVATKRAQAWCYSKN 147
Query: 118 RIPYIECSAKVRINVDQAFHELVRIVL 144
IPY E SAK INV+QAF + R L
Sbjct: 148 NIPYFETSAKEAINVEQAFQTIARNAL 174
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 74/138 (53%), Gaps = 10/138 (7%)
Query: 12 DPTIEDSYTKQCVID---------DIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
D T DSY +D + +L I DTAGQE F + Y R G ++V+
Sbjct: 31 DDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 90
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
VTDR+SF+ + ++ ++I R + L+VGNK DL +R V+S + + +A I +I
Sbjct: 91 VTDRDSFDNVKQWIQEIDRYA-MENVNKLLVGNKCDLVSKRVVTSDEGRELADSHGIKFI 149
Query: 123 ECSAKVRINVDQAFHELV 140
E SAK NV+QAFH +
Sbjct: 150 ETSAKNAYNVEQAFHTMA 167
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 32 LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL---RVKDRDEF 88
L I DTAGQE F ++R + R + LL FSV DR SFE + + ++ + VKD + F
Sbjct: 58 LQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHF 117
Query: 89 PMLMVGNKADLDHQRQVSSMDAQNVARQLR-IPYIECSAKVRINVDQAFHELVRIVLLHT 147
P +++GNK D RQV++ +AQ + PY+E SAK NV AF E VR VL
Sbjct: 118 PFVVLGNKVD-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVE 176
Query: 148 KQ 149
+Q
Sbjct: 177 EQ 178
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 10/147 (6%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F TDY PT+ D+++ +D L + DTAGQE++S +R R + F+L FS+ +
Sbjct: 34 FPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISK 93
Query: 67 NSFEEIYKFHRQILRVKDRDEFPMLMVGNKADL--------DHQRQVSSMDAQNVARQL- 117
S+E + K LR + P+++VG K DL DH ++S + + +Q+
Sbjct: 94 ASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG 152
Query: 118 RIPYIECSAKVRINVDQAFHELVRIVL 144
YIECS+K + NV F +++VL
Sbjct: 153 AAAYIECSSKTQQNVKAVFDTAIKVVL 179
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 80/147 (54%), Gaps = 6/147 (4%)
Query: 3 IESYFVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVF 61
+ F Y TI D TK+ ++DD + I DTAG E F ++ + R + +LVF
Sbjct: 29 VNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSLGVAFYRGADCCVLVF 88
Query: 62 SVTDRNSFEEIYKFHRQIL---RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVA-RQL 117
VT N+F+ + + + L +D + FP +++GNK DL++ RQV++ AQ +
Sbjct: 89 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKN 147
Query: 118 RIPYIECSAKVRINVDQAFHELVRIVL 144
IPY E SAK INV+QAF + R L
Sbjct: 148 NIPYFETSAKEAINVEQAFQTIARNAL 174
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 25 IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD 84
+D + +L + DTAGQE F ++ Y R LL++ VT++ SF+ I + +I
Sbjct: 55 VDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ 114
Query: 85 RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVR 141
D ++++GNK D H+R V D + +A++ +P++E SAK +NVD AF + +
Sbjct: 115 HD-VALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAK 170
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 82.8 bits (203), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 80/140 (57%), Gaps = 2/140 (1%)
Query: 3 IESYFVTDYDPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVF 61
++ FV + TI ++ Q + ++D + +I DTAGQE + ++ Y R ++VF
Sbjct: 33 VKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVF 92
Query: 62 SVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPY 121
VT++ SFE K+ ++ L+ + M + GNK+DL R+V++ DAQ A++ + +
Sbjct: 93 DVTNQASFERAKKWVQE-LQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFF 151
Query: 122 IECSAKVRINVDQAFHELVR 141
+E SAK NV + F+E+ R
Sbjct: 152 METSAKTATNVKEIFYEIAR 171
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 82.4 bits (202), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 74/134 (55%), Gaps = 3/134 (2%)
Query: 7 FVTDYDPTIE-DSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F DY TI D +Q ++D RL + DTAGQEEF A+ + Y R + +LVFS TD
Sbjct: 30 FTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTD 89
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
R SFE I + ++ V + + P +V NK DL + + +A+ +A++L++ + S
Sbjct: 90 RESFEAISSWREKV--VAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTS 147
Query: 126 AKVRINVDQAFHEL 139
K +NV + F L
Sbjct: 148 VKEDLNVSEVFKYL 161
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 18/152 (11%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F TDY PT+ D+++ V+D L + DTAGQE+++ +R R + FLL FS+ +
Sbjct: 31 FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK 90
Query: 67 NSFEEIYKFHRQILRVKD-RDEFPMLMVGNKADL--------DHQRQVSSMDAQNVARQL 117
S+E I+K + + +K P+++VG K DL DH S AQ +L
Sbjct: 91 ASYENIHK--KWLPELKHYAPGIPIVLVGTKLDLRDDKQFLKDHPGAASITTAQ--GEEL 146
Query: 118 R-----IPYIECSAKVRINVDQAFHELVRIVL 144
R + Y+ECS+K + NV F +R+ L
Sbjct: 147 RKMIGAVRYLECSSKTQQNVKAVFDTAIRVAL 178
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 7/141 (4%)
Query: 11 YDPTI-EDSYTKQCVID-DIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNS 68
Y TI D TK+ +D D A + + DTAGQE F ++ + R + +LV+ VT+ +S
Sbjct: 37 YKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASS 96
Query: 69 FEEIYKFHRQIL---RVKDRDEFPMLMVGNKADLDHQRQ-VSSMDAQNVARQLR-IPYIE 123
FE I + + L V + FP +++GNK D + ++ VS AQ +A+ L IP
Sbjct: 97 FENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFL 156
Query: 124 CSAKVRINVDQAFHELVRIVL 144
SAK INVD AF E+ R L
Sbjct: 157 TSAKNAINVDTAFEEIARSAL 177
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 68/117 (58%), Gaps = 5/117 (4%)
Query: 32 LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL---RVKDRDEF 88
+ I DTAGQE F ++R + R + LL FSV D SF+ + + ++ + VK+ + F
Sbjct: 58 MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 117
Query: 89 PMLMVGNKADLDHQRQVSSMDAQNVAR-QLRIPYIECSAKVRINVDQAFHELVRIVL 144
P +++GNK D+ +RQVS+ +AQ R PY E SAK NV AF E VR VL
Sbjct: 118 PFVILGNKIDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 68/117 (58%), Gaps = 5/117 (4%)
Query: 32 LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR---VKDRDEF 88
+ I DTAGQE F ++R + R + LL FSV D SF+ + + ++ + VK+ + F
Sbjct: 60 MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 119
Query: 89 PMLMVGNKADLDHQRQVSSMDAQNVAR-QLRIPYIECSAKVRINVDQAFHELVRIVL 144
P +++GNK D+ +RQVS+ +AQ R PY E SAK NV AF E VR VL
Sbjct: 120 PFVILGNKIDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 175
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Query: 32 LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFP-M 90
L + DTAGQE F ++ + R GFLL+F +T + SF + + Q L+ E P +
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQ-LQANAYCENPDI 144
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQC 150
+++GNKADL QR+V+ A+ +A + IPY E SA NV++A L+ +++ +QC
Sbjct: 145 VLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQC 204
Query: 151 KNST 154
T
Sbjct: 205 VEKT 208
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 81/140 (57%), Gaps = 5/140 (3%)
Query: 9 TDYDPTIEDSYTKQCVIDDIPAR---LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
+D + ED+Y + ++D A LD+ + G+ E+ + + M+ G+ +L+V+S+TD
Sbjct: 35 SDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITD 92
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
R SFE+ + Q+ R + ++ P+++VGNK+DL R+VS + + A +IE S
Sbjct: 93 RASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETS 152
Query: 126 AKVRINVDQAFHELVRIVLL 145
A V+ NV + F +VR V L
Sbjct: 153 AAVQHNVKELFEGIVRQVRL 172
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Query: 26 DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDR 85
+D +L I DTAGQE + + Y R GF+L++ +T+ SF + + QI +
Sbjct: 50 NDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI-KTYSW 108
Query: 86 DEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143
D +L+VGNK D++ +R VSS + +A L + E SAK INV Q F LV ++
Sbjct: 109 DNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 25 IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD 84
+D +L I DTAGQE F + Y R G ++V+ VTD+ S+ + ++ ++I R
Sbjct: 53 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS 112
Query: 85 RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAF 136
+ L+VGNK+DL ++ V + A+ A L IP++E SAK NV+QAF
Sbjct: 113 EN-VNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAF 163
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 25 IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD 84
+D +L I DTAGQE F + Y R G ++V+ VTD+ S+ + ++ ++I R
Sbjct: 53 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS 112
Query: 85 RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAF 136
+ L+VGNK+DL ++ V + A+ A L IP++E SAK NV+QAF
Sbjct: 113 EN-VNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAF 163
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 68/117 (58%), Gaps = 5/117 (4%)
Query: 32 LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL---RVKDRDEF 88
+ I DTAGQE F ++R + R + LL FSV D SF+ + + ++ + VK+ + F
Sbjct: 62 MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 121
Query: 89 PMLMVGNKADLDHQRQVSSMDAQNVAR-QLRIPYIECSAKVRINVDQAFHELVRIVL 144
P +++GNK D+ +RQVS+ +AQ + PY E SAK NV AF E VR +L
Sbjct: 122 PFVILGNKTDI-KERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRIL 177
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 81/140 (57%), Gaps = 5/140 (3%)
Query: 9 TDYDPTIEDSYTKQCVIDDIPAR---LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
+D + ED+Y + ++D A LD+ + G+ E+ + + M+ G+ +L+V+S+TD
Sbjct: 35 SDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITD 92
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
R SFE+ + Q+ R + ++ P+++VGNK+DL R+VS + + A +IE S
Sbjct: 93 RASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETS 152
Query: 126 AKVRINVDQAFHELVRIVLL 145
A V+ NV + F +VR V L
Sbjct: 153 AAVQHNVKELFEGIVRQVRL 172
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 14/150 (9%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F TDY PT+ D+++ V++ L + DTAGQE+++ +R R + F+L FS+ +
Sbjct: 33 FPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 92
Query: 67 NSFEEIYKFHRQILRVKD-RDEFPMLMVGNKADL--------DHQRQV--SSMDAQNVAR 115
S+E + K + I +K P+++VG K DL DH V +++ + + +
Sbjct: 93 ASYENVSK--KWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKK 150
Query: 116 QLRIP-YIECSAKVRINVDQAFHELVRIVL 144
+ P YIECS+K + NV F +R+VL
Sbjct: 151 LIGAPAYIECSSKSQENVKGVFDAAIRVVL 180
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 79/142 (55%), Gaps = 3/142 (2%)
Query: 3 IESYFVTDYDPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVF 61
+E F + TI + + V I+ +L I DTAGQE F + Y R G +LV+
Sbjct: 24 VEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVY 83
Query: 62 SVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPY 121
+TD +F I ++ + + DE +L+VGNK+D++ R V++ + +A++L IP+
Sbjct: 84 DITDERTFTNIKQWFKTV-NEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPF 141
Query: 122 IECSAKVRINVDQAFHELVRIV 143
IE SAK NV++ F L +++
Sbjct: 142 IESSAKNDDNVNEIFFTLAKLI 163
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 81/140 (57%), Gaps = 5/140 (3%)
Query: 9 TDYDPTIEDSYTKQCVIDDIPAR---LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
+D + ED+Y + ++D A LD+ + G+ E+ + + M+ G+ +L+V+S+TD
Sbjct: 35 SDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITD 92
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
R SFE+ + Q+ R + ++ P+++VGNK+DL R+VS + + A +IE S
Sbjct: 93 RASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETS 152
Query: 126 AKVRINVDQAFHELVRIVLL 145
A V+ NV + F +VR V L
Sbjct: 153 AAVQHNVKELFEGIVRQVRL 172
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 81/140 (57%), Gaps = 5/140 (3%)
Query: 9 TDYDPTIEDSYTKQCVIDDIPAR---LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
+D + ED+Y + ++D A LD+ + G+ E+ + + M+ G+ +L+V+S+TD
Sbjct: 66 SDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITD 123
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
R SFE+ + Q+ R + ++ P+++VGNK+DL R+VS + + A +IE S
Sbjct: 124 RASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETS 183
Query: 126 AKVRINVDQAFHELVRIVLL 145
A V+ NV + F +VR V L
Sbjct: 184 AAVQHNVKELFEGIVRQVRL 203
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 79/142 (55%), Gaps = 3/142 (2%)
Query: 3 IESYFVTDYDPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVF 61
+E F + TI + + V I+ +L + DTAGQE F + Y R G +LV+
Sbjct: 41 VEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVY 100
Query: 62 SVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPY 121
VTD +F I ++ + + DE +L+VGNK+D++ R V++ + +A++L IP+
Sbjct: 101 DVTDERTFTNIKQWFKTV-NEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPF 158
Query: 122 IECSAKVRINVDQAFHELVRIV 143
IE SAK NV++ F L +++
Sbjct: 159 IESSAKNDDNVNEIFFTLAKLI 180
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 79/142 (55%), Gaps = 3/142 (2%)
Query: 3 IESYFVTDYDPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVF 61
+E F + TI + + V I+ +L + DTAGQE F + Y R G +LV+
Sbjct: 28 VEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVY 87
Query: 62 SVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPY 121
VTD +F I ++ + + DE +L+VGNK+D++ R V++ + +A++L IP+
Sbjct: 88 DVTDERTFTNIKQWFKTV-NEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPF 145
Query: 122 IECSAKVRINVDQAFHELVRIV 143
IE SAK NV++ F L +++
Sbjct: 146 IESSAKNDDNVNEIFFTLAKLI 167
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 75/135 (55%), Gaps = 2/135 (1%)
Query: 7 FVTDYDPTIE-DSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F Y TI D +K ++D RL + DTAGQE F ++ Y+R ++V+ +T+
Sbjct: 39 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 98
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
NSF + K+ + R + + +++VGNK DL +RQVS+ + + A++L + +IE S
Sbjct: 99 TNSFHQTSKWIDDV-RTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETS 157
Query: 126 AKVRINVDQAFHELV 140
AK NV Q F +
Sbjct: 158 AKAGYNVKQLFRRVA 172
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 25 IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD 84
+D +L I DTAGQE F + Y R G ++V+ VTD+ SF + ++ ++I R
Sbjct: 43 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 102
Query: 85 RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELV 140
+ L+VGNK DL ++ V A+ A L IP++E SAK NV+Q+F +
Sbjct: 103 EN-VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 157
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 79.7 bits (195), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 78/142 (54%), Gaps = 3/142 (2%)
Query: 3 IESYFVTDYDPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVF 61
+E F + TI + + V I+ +L I DTAGQE F + Y R G +LV+
Sbjct: 24 VEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAXGIILVY 83
Query: 62 SVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPY 121
+TD +F I ++ + + DE +L+VGNK+D + R V++ + +A++L IP+
Sbjct: 84 DITDERTFTNIKQWFKTV-NEHANDEAQLLLVGNKSDXE-TRVVTADQGEALAKELGIPF 141
Query: 122 IECSAKVRINVDQAFHELVRIV 143
IE SAK NV++ F L +++
Sbjct: 142 IESSAKNDDNVNEIFFTLAKLI 163
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 79.7 bits (195), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 25 IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD 84
+D +L I DTAGQE F + Y R G ++V+ VTD+ SF + ++ ++I R
Sbjct: 50 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 109
Query: 85 RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELV 140
+ L+VGNK DL ++ V A+ A L IP++E SAK NV+Q+F +
Sbjct: 110 EN-VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 164
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 25 IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD 84
+D +L I DTAGQE F + Y R G ++V+ VTD+ SF + ++ ++I R
Sbjct: 50 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 109
Query: 85 RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELV 140
+ L+VGNK DL ++ V A+ A L IP++E SAK NV+Q+F +
Sbjct: 110 EN-VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 164
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 25 IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD 84
+D +L I DTAGQE F + Y R G ++V+ VTD+ SF + ++ ++I R
Sbjct: 60 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 119
Query: 85 RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELV 140
+ L+VGNK DL ++ V A+ A L IP++E SAK NV+Q+F +
Sbjct: 120 EN-VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 174
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
Query: 25 IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD 84
+D +L I DTAGQE F + Y R G ++V+ VTD+ SF + ++ ++I R
Sbjct: 77 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 136
Query: 85 RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAF 136
+ L+VGNK DL ++ V A+ A L IP++E SAK NV+Q+F
Sbjct: 137 EN-VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 187
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 25 IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD 84
+D +L I DTAGQE F + Y R G ++V+ VTD+ SF + ++ ++I R
Sbjct: 60 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 119
Query: 85 RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELV 140
+ L+VGNK DL ++ V A+ A L IP++E SAK NV+Q+F +
Sbjct: 120 EN-VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 174
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 79.3 bits (194), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 25 IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD 84
+D +L I DTAGQE F + Y R G ++V+ VTD+ SF + ++ ++I R
Sbjct: 69 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 128
Query: 85 RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELV 140
+ L+VGNK DL ++ V A+ A L IP++E SAK NV+Q+F +
Sbjct: 129 EN-VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 183
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 79.3 bits (194), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Query: 25 IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD 84
+D +L I DTAGQE F + Y R G +LV+ +T+ SF+ I + R I
Sbjct: 52 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS 111
Query: 85 RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVR 141
D M++ GNK D++ +RQVS + +A I ++E SAK INV+ AF L R
Sbjct: 112 ADVEKMIL-GNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 167
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 79.3 bits (194), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 78/142 (54%), Gaps = 3/142 (2%)
Query: 3 IESYFVTDYDPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVF 61
+E F + TI + + V I+ +L + DTAGQE F + Y R G +LV+
Sbjct: 24 VEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAXGIILVY 83
Query: 62 SVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPY 121
VTD +F I ++ + + DE +L+VGNK+D + R V++ + +A++L IP+
Sbjct: 84 DVTDERTFTNIKQWFKTV-NEHANDEAQLLLVGNKSDXE-TRVVTADQGEALAKELGIPF 141
Query: 122 IECSAKVRINVDQAFHELVRIV 143
IE SAK NV++ F L +++
Sbjct: 142 IESSAKNDDNVNEIFFTLAKLI 163
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 79.3 bits (194), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 75/134 (55%), Gaps = 2/134 (1%)
Query: 7 FVTDYDPTIE-DSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F Y TI D +K ++D RL + DTAGQE F ++ Y+R ++V+ +T+
Sbjct: 31 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITN 90
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
NSF++ K+ + R + + +++VGNK DL +RQVS + + A++L + +IE S
Sbjct: 91 VNSFQQTTKWIDDV-RTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETS 149
Query: 126 AKVRINVDQAFHEL 139
AK NV Q F +
Sbjct: 150 AKAGYNVKQLFRRV 163
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 79.3 bits (194), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+L I DTAGQE + + Y R GFLL++ + ++ SF + + QI + D +
Sbjct: 72 KLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI-KTYSWDNAQV 130
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143
++VGNK DL+ +R V + D + +A L + E SAK INV Q F LV ++
Sbjct: 131 ILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 79.3 bits (194), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 12/149 (8%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F TDY PT+ D+++ V+D L + DTAGQE+++ +R R + F+L FS+ +
Sbjct: 31 FPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 90
Query: 67 NSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQ----------VSSMDAQNVARQ 116
S+E + K LR P+++VG K DL +Q +++ + + +
Sbjct: 91 ASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKL 149
Query: 117 LRIP-YIECSAKVRINVDQAFHELVRIVL 144
+ P YIECS+K + NV F +++VL
Sbjct: 150 IGSPIYIECSSKTQQNVKAVFDAAIKVVL 178
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 72/139 (51%), Gaps = 2/139 (1%)
Query: 4 ESYFVTDYDPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
E F + + TI + + + +D +L I DTAGQE F + Y R G +LV+
Sbjct: 28 EDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 87
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+T+ SF+ I + R I D M++ GNK D++ +RQVS + +A I ++
Sbjct: 88 ITNEKSFDNIRNWIRNIEEHASADVEKMIL-GNKCDVNDKRQVSKERGEKLALDYGIKFM 146
Query: 123 ECSAKVRINVDQAFHELVR 141
E SAK INV+ AF L R
Sbjct: 147 ETSAKANINVENAFFTLAR 165
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 75/134 (55%), Gaps = 2/134 (1%)
Query: 7 FVTDYDPTIE-DSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F Y TI D +K ++D RL + DTAGQE F ++ Y+R ++V+ +T+
Sbjct: 26 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 85
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
NSF++ K+ + R + + +++VGNK DL +RQVS + + A++L + +IE S
Sbjct: 86 VNSFQQTTKWIDDV-RTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETS 144
Query: 126 AKVRINVDQAFHEL 139
AK NV Q F +
Sbjct: 145 AKAGYNVKQLFRRV 158
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+L I DTAGQE + + Y R GF+L++ +T+ SF + + QI + D +
Sbjct: 73 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQI-KTYSWDNAQV 131
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELV 140
++VGNK D++ +R V + Q +A QL + E SAK I+V QAF LV
Sbjct: 132 ILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV 181
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 2/139 (1%)
Query: 7 FVTDYDPTIE-DSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F Y TI D +K ++D RL + DTAGQE F ++ Y+R ++V+ +T+
Sbjct: 27 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 86
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
NSF++ K+ + R + + +++VGNK DL +RQ++ + + A++L + +IE S
Sbjct: 87 LNSFQQTSKWIDDV-RTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETS 145
Query: 126 AKVRINVDQAFHELVRIVL 144
AK NV Q F + +L
Sbjct: 146 AKTGYNVKQLFRRVASALL 164
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
RL I DTAGQE F+++ Y RS +G +LV+ +T + +F+++ K+ + I + D +
Sbjct: 76 RLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDA-EL 134
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
L+VGNK D + R+++ + A+Q+ + + E SAK NVD+ F +LV +L
Sbjct: 135 LLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 70/124 (56%), Gaps = 2/124 (1%)
Query: 32 LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFP-M 90
L + DTAG E F ++ + R GFLL+F +T + SF + + Q L+ E P +
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQ-LQANAYCENPDI 130
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQC 150
+++GNKADL QR+V+ A+ +A + IPY E SA NV+++ L+ +++ ++C
Sbjct: 131 VLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEKC 190
Query: 151 KNST 154
T
Sbjct: 191 VEKT 194
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+L I DTAG E + + Y R GF+L + +T+ SF + + QI + D +
Sbjct: 58 KLQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQI-KTYSWDNAQV 116
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143
L+VGNK D + +R VSS + +A L + E SAK INV Q F LV ++
Sbjct: 117 LLVGNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 70/124 (56%), Gaps = 2/124 (1%)
Query: 32 LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFP-M 90
L + DTAG E F ++ + R GFLL+F +T + SF + + Q L+ E P +
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQ-LQANAYCENPDI 130
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQC 150
+++GNKADL QR+V+ A+ +A + IPY E SA NV+++ L+ +++ ++C
Sbjct: 131 VLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEKC 190
Query: 151 KNST 154
T
Sbjct: 191 VEKT 194
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 2/124 (1%)
Query: 32 LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFP-M 90
L + DTAG E F ++ + R GFLL F +T + SF + + Q L+ E P +
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQ-LQANAYCENPDI 130
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQC 150
+++GNKADL QR+V+ A+ +A + IPY E SA NV+++ L+ ++ ++C
Sbjct: 131 VLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKRXEKC 190
Query: 151 KNST 154
T
Sbjct: 191 VEKT 194
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 1/116 (0%)
Query: 25 IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD 84
+D +L I DTAGQE F + Y R G ++V+ VTD+ SF + ++ ++I R
Sbjct: 52 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 111
Query: 85 RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELV 140
+ L+VG K DL ++ V A+ A L IP++E SAK NV+Q+F +
Sbjct: 112 EN-VNKLLVGIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 166
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 2/124 (1%)
Query: 32 LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFP-M 90
L + DTAG E F ++ + R GFLL F +T + SF + + Q L+ E P +
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQ-LQANAYCENPDI 130
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQC 150
+++GNKADL QR+V+ A+ +A + IPY E SA NV+++ L+ ++ ++C
Sbjct: 131 VLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKRXEKC 190
Query: 151 KNST 154
T
Sbjct: 191 VEKT 194
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 2/135 (1%)
Query: 7 FVTDYDPTIE-DSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F Y TI D +K ++D RL + DTAG E F ++ Y+R ++V+ +T+
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITN 97
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
NSF++ K+ + R + + +++VGNK DL +RQVS + + A++L + +IE S
Sbjct: 98 VNSFQQTTKWIDDV-RTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETS 156
Query: 126 AKVRINVDQAFHELV 140
AK NV Q F +
Sbjct: 157 AKAGYNVKQLFRRVA 171
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Query: 11 YDPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSF 69
+D TI + + + ID +L I DTAGQE F ++ Y R G LLV+ +T R++F
Sbjct: 39 HDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTF 98
Query: 70 EEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVR 129
+ + R ++++GNK+DL+ +R+V + + AR+ + ++E SAK
Sbjct: 99 NHLTTWLEDA-RQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTA 157
Query: 130 INVDQAF 136
NV++AF
Sbjct: 158 SNVEEAF 164
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
Query: 3 IESYFVTDYDPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVF 61
IE+ F D + TI + + V + +L I DTAGQE F ++ Y R G LLV+
Sbjct: 46 IENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 105
Query: 62 SVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPY 121
+T R ++ + + R +++ GNK DLD +R+V+ ++A A++ + +
Sbjct: 106 DITSRETYNSLAAWLTDA-RTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMF 164
Query: 122 IECSAKVRINVDQAFHELVRIVL 144
+E SA NV++AF + R +L
Sbjct: 165 LETSALTGENVEEAFLKCARTIL 187
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 2/134 (1%)
Query: 7 FVTDYDPTIE-DSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F Y TI D +K ++D RL + DTAG E F ++ Y+R ++V+ +T+
Sbjct: 31 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITN 90
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
NSF++ K+ + R + + +++VGNK DL +RQVS + + A++L + +IE S
Sbjct: 91 VNSFQQTTKWIDDV-RTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETS 149
Query: 126 AKVRINVDQAFHEL 139
AK NV Q F +
Sbjct: 150 AKAGYNVKQLFRRV 163
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 2/133 (1%)
Query: 7 FVTDYDPTIE-DSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F +Y TI D +K +D+ P RL + DTAGQE F ++ Y+R ++V+ +T+
Sbjct: 26 FDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITN 85
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
R SFE K+ + IL + +D + +VGNK DL R+V+ + A++ + E S
Sbjct: 86 RQSFENTTKWIQDILNERGKDVI-IALVGNKTDLGDLRKVTYEEGXQKAQEYNTXFHETS 144
Query: 126 AKVRINVDQAFHE 138
AK N+ F +
Sbjct: 145 AKAGHNIKVLFKK 157
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 2/135 (1%)
Query: 7 FVTDYDPTIE-DSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F Y TI D +K ++D RL + DTAG E F ++ Y+R ++V+ +T+
Sbjct: 41 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITN 100
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
NSF++ K+ + R + + +++VGNK DL +RQVS + + A++L + +IE S
Sbjct: 101 VNSFQQTTKWIDDV-RTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETS 159
Query: 126 AKVRINVDQAFHELV 140
AK NV Q F +
Sbjct: 160 AKAGYNVKQLFRRVA 174
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 2/139 (1%)
Query: 4 ESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
E+ F + T++ S+ TK+ I L I DTAGQE F A+ Y R G +LV+
Sbjct: 28 ENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYD 87
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+TD +SF+++ + ++ LR +E + +VGNK DL+ +R VS +A++ A + +
Sbjct: 88 ITDEDSFQKVKNWVKE-LRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHY 146
Query: 123 ECSAKVRINVDQAFHELVR 141
SAK +++ F +L +
Sbjct: 147 HTSAKQNKGIEELFLDLCK 165
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 2/139 (1%)
Query: 4 ESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
E+ F + T++ S+ TK+ I L I DTAGQE F A+ Y R G +LV+
Sbjct: 42 ENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYD 101
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+TD +SF+++ + ++ LR +E + +VGNK DL+ +R VS +A++ A + +
Sbjct: 102 ITDEDSFQKVKNWVKE-LRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHY 160
Query: 123 ECSAKVRINVDQAFHELVR 141
SAK +++ F +L +
Sbjct: 161 HTSAKQNKGIEELFLDLCK 179
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 68/127 (53%), Gaps = 2/127 (1%)
Query: 11 YDPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSF 69
+D TI + + V ID +L I DTAGQE F ++ Y R G LLV+ +T R +F
Sbjct: 50 HDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 109
Query: 70 EEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVR 129
+ + R ++++GNK+DL+ +R V + + AR+ + ++E SAK
Sbjct: 110 NHLTSWLEDA-RQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTA 168
Query: 130 INVDQAF 136
NV++AF
Sbjct: 169 CNVEEAF 175
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 2/136 (1%)
Query: 7 FVTDYDPTIE-DSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
+ DY TI D K +D +L I DTAGQE F + Y R G ++V+ VTD
Sbjct: 33 YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTD 92
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
+ SF + + ++I R L+VGNK DL +R V A+ A ++P++E S
Sbjct: 93 QESFNGVKMWLQEIDRYATSTVLK-LLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETS 151
Query: 126 AKVRINVDQAFHELVR 141
A NV+ AF + R
Sbjct: 152 ALDSTNVEDAFLTMAR 167
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 2/136 (1%)
Query: 7 FVTDYDPTIE-DSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
+ DY TI D K +D +L I DTAGQE F + Y R G ++V+ VTD
Sbjct: 33 YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTD 92
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
+ SF + + ++I R L+VGNK DL +R V A+ A ++P++E S
Sbjct: 93 QESFNGVKMWLQEIDRYATSTVLK-LLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETS 151
Query: 126 AKVRINVDQAFHELVR 141
A NV+ AF + R
Sbjct: 152 ALDSTNVEDAFLTMAR 167
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 2/136 (1%)
Query: 7 FVTDYDPTIE-DSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
+ DY TI D K +D +L I DTAGQE F + Y R G ++V+ VTD
Sbjct: 46 YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTD 105
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
+ SF + + ++I R L+VGNK DL +R V A+ A ++P++E S
Sbjct: 106 QESFNGVKMWLQEIDRYATSTVLK-LLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETS 164
Query: 126 AKVRINVDQAFHELVR 141
A NV+ AF + R
Sbjct: 165 ALDSTNVEDAFLTMAR 180
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 75/131 (57%), Gaps = 1/131 (0%)
Query: 16 EDSYTKQCVIDDIPARLDILDTAGQEEFSA-MREQYMRSGEGFLLVFSVTDRNSFEEIYK 74
ED+Y ++ ++D L + D Q + +R+ +++G+ FL+VFSVTDR SF ++ +
Sbjct: 58 EDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPE 117
Query: 75 FHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQ 134
++ + + P+++VGNK+DL R+VS + +++A L +IE SA + N +
Sbjct: 118 TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 177
Query: 135 AFHELVRIVLL 145
F VR + L
Sbjct: 178 LFEGAVRQIRL 188
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 2/139 (1%)
Query: 4 ESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
E+ F + T+ S+ TK+ I L I DTAGQE F A+ Y R G +LV+
Sbjct: 28 ENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYD 87
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+TD +SF+++ + ++ LR +E + +VGNK DL+ +R VS +A++ A + +
Sbjct: 88 ITDEDSFQKVKNWVKE-LRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHY 146
Query: 123 ECSAKVRINVDQAFHELVR 141
SAK +++ F +L +
Sbjct: 147 HTSAKQNKGIEELFLDLCK 165
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 69/128 (53%)
Query: 18 SYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHR 77
+Y + V+D A L + D Q+ + M G+ +++V+SVTD+ SFE+ +
Sbjct: 42 TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 101
Query: 78 QILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFH 137
Q+ R + D+ P+++VGNK+DL R+VS + + A +IE SA + NV F
Sbjct: 102 QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFE 161
Query: 138 ELVRIVLL 145
+VR + L
Sbjct: 162 GVVRQIRL 169
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 2/139 (1%)
Query: 4 ESYFVTDYDPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
E F+ D TI + + + + +L I DTAGQE F A+ Y R G L+V+
Sbjct: 37 EKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD 96
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+T R+++ + + + + + ++++GNKADL+ QR V+ +A+ A + + ++
Sbjct: 97 ITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADLEAQRDVTYEEAKQFAEENGLLFL 155
Query: 123 ECSAKVRINVDQAFHELVR 141
E SAK NV+ AF E +
Sbjct: 156 EASAKTGENVEDAFLEAAK 174
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 69/128 (53%)
Query: 18 SYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHR 77
+Y + V+D A L + D Q+ + M G+ +++V+SVTD+ SFE+ +
Sbjct: 37 TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 96
Query: 78 QILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFH 137
Q+ R + D+ P+++VGNK+DL R+VS + + A +IE SA + NV F
Sbjct: 97 QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFE 156
Query: 138 ELVRIVLL 145
+VR + L
Sbjct: 157 GVVRQIRL 164
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 69/128 (53%)
Query: 18 SYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHR 77
+Y + V+D A L + D Q+ + M G+ +++V+SVTD+ SFE+ +
Sbjct: 42 TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 101
Query: 78 QILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFH 137
Q+ R + D+ P+++VGNK+DL R+VS + + A +IE SA + NV F
Sbjct: 102 QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFE 161
Query: 138 ELVRIVLL 145
+VR + L
Sbjct: 162 GVVRQIRL 169
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 3 IESYFVTDYDPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVF 61
IE F D + TI + + + + +L I DTAGQE F ++ Y R G LLV+
Sbjct: 31 IEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 90
Query: 62 SVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPY 121
+T R ++ + + R+ +++ GNK DLD R+V+ ++A A++ + +
Sbjct: 91 DITSRETYNALTNWLTDA-RMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMF 149
Query: 122 IECSAKVRINVDQAFHELVRIVL 144
+E SA NV++AF + R +L
Sbjct: 150 LETSALTGENVEEAFVQCARKIL 172
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+ I DTAGQE + A+ Y R G L+V+ ++ +S+E + + LR D +
Sbjct: 63 KAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSE-LRENADDNVAV 121
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143
++GNK+DL H R V + +++ A++ ++ + E SA NVD+AF EL+ +
Sbjct: 122 GLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTI 174
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 75/131 (57%), Gaps = 1/131 (0%)
Query: 16 EDSYTKQCVIDDIPARLDILDTAGQEEFSA-MREQYMRSGEGFLLVFSVTDRNSFEEIYK 74
ED+Y ++ ++D L + D Q + +++ +++G+ FL+VFSVTDR SF ++ +
Sbjct: 37 EDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE 96
Query: 75 FHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQ 134
++ + + P+++VGNK+DL R+VS + +++A L +IE SA + N +
Sbjct: 97 TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 156
Query: 135 AFHELVRIVLL 145
F VR + L
Sbjct: 157 LFEGAVRQIRL 167
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 75/131 (57%), Gaps = 1/131 (0%)
Query: 16 EDSYTKQCVIDDIPARLDILDTAGQEEFSA-MREQYMRSGEGFLLVFSVTDRNSFEEIYK 74
ED+Y ++ ++D L + D Q + +++ +++G+ FL+VFSVTDR SF ++ +
Sbjct: 47 EDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE 106
Query: 75 FHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQ 134
++ + + P+++VGNK+DL R+VS + +++A L +IE SA + N +
Sbjct: 107 TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 166
Query: 135 AFHELVRIVLL 145
F VR + L
Sbjct: 167 LFEGAVRQIRL 177
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 12 DPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFE 70
+ TI+ ++ Q V +DD + +I DTAGQE + ++ Y R + ++V+ +T+ ++F
Sbjct: 35 ESTIQAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFA 94
Query: 71 EIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRI 130
+ +++ R + + + GNKADL +R V +AQ A + ++E SAK +
Sbjct: 95 RAKNWVKELQR-QASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAM 153
Query: 131 NVDQAFHELVR 141
NV++ F + +
Sbjct: 154 NVNEIFMAIAK 164
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 12 DPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFE 70
+ TI ++ Q V +DD + +I DTAGQE + ++ Y R + ++V+ +T+ SF
Sbjct: 36 ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFA 95
Query: 71 EIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRI 130
+ +++ R + + + GNKADL ++R V +AQ+ A + ++E SAK +
Sbjct: 96 RAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSM 154
Query: 131 NVDQAFHELVR 141
NV++ F + +
Sbjct: 155 NVNEIFMAIAK 165
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 12 DPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFE 70
+ TI ++ Q V +DD + +I DTAGQE + ++ Y R + ++V+ +T+ SF
Sbjct: 36 ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFA 95
Query: 71 EIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRI 130
+ +++ R + + + GNKADL ++R V +AQ+ A + ++E SAK +
Sbjct: 96 RAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSM 154
Query: 131 NVDQAFHELVR 141
NV++ F + +
Sbjct: 155 NVNEIFMAIAK 165
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 12 DPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFE 70
+ TI ++ Q V +DD + +I DTAGQE + ++ Y R + ++V+ +T+ SF
Sbjct: 37 ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFA 96
Query: 71 EIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRI 130
+ +++ R + + + GNKADL ++R V +AQ+ A + ++E SAK +
Sbjct: 97 RAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSM 155
Query: 131 NVDQAFHELVR 141
NV++ F + +
Sbjct: 156 NVNEIFMAIAK 166
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 16 EDSYTKQCVIDDIPARLDILDTAGQEEF--SAMREQYMRSGEGFLLVFSVTDRNSFEEIY 73
ED Y + +D L ++DT E+ S +E ++ G +++V+S+ DR SFE
Sbjct: 38 EDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESAS 97
Query: 74 KFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVD 133
+ Q+ R D P+++VGNKADL R+VS + + A +IE SA ++ NV
Sbjct: 98 ELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVA 157
Query: 134 QAF 136
+ F
Sbjct: 158 ELF 160
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 12 DPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFE 70
+ TI ++ Q V +DD + +I DTAGQE + ++ Y R + ++V+ +T+ SF
Sbjct: 36 ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFA 95
Query: 71 EIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRI 130
+ +++ R + + + GNKADL ++R V +AQ+ A + ++E SAK +
Sbjct: 96 RAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSM 154
Query: 131 NVDQAFHELVR 141
NV++ F + +
Sbjct: 155 NVNEIFMAIAK 165
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 12 DPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFE 70
+ TI ++ Q V +DD + +I DTAGQE + ++ Y R + ++V+ +T+ SF
Sbjct: 36 ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFA 95
Query: 71 EIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRI 130
+ +++ R + + + GNKADL ++R V +AQ+ A + ++E SAK +
Sbjct: 96 RAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSM 154
Query: 131 NVDQAFHELVR 141
NV++ F + +
Sbjct: 155 NVNEIFMAIAK 165
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 12 DPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFE 70
+ TI ++ Q V +DD + +I DTAGQE + ++ Y R + ++V+ +T+ SF
Sbjct: 36 ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFA 95
Query: 71 EIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRI 130
+ +++ R + + + GNKADL ++R V +AQ+ A + ++E SAK +
Sbjct: 96 RAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSM 154
Query: 131 NVDQAFHELVR 141
NV++ F + +
Sbjct: 155 NVNEIFMAIAK 165
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 12 DPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFE 70
+ TI ++ Q V +DD + +I DTAGQE + ++ Y R + ++V+ +T+ SF
Sbjct: 36 ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFA 95
Query: 71 EIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRI 130
+ +++ R + + + GNKADL ++R V +AQ+ A + ++E SAK +
Sbjct: 96 RAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSM 154
Query: 131 NVDQAFHELVR 141
NV++ F + +
Sbjct: 155 NVNEIFMAIAK 165
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Query: 32 LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFP-M 90
L + DTAG E F ++ + R GFLL+F +T+ SF + + Q L++ E P +
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQ-LQMHAYSENPDI 130
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVL 144
++ GNK+DL+ QR V +A+ +A + IPY E SA N+ A L+ +++
Sbjct: 131 VLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIM 184
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 73/139 (52%), Gaps = 2/139 (1%)
Query: 4 ESYFVTDYDPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
E F+ D TI + + + + +L I DTAGQ F A+ Y R G L+V+
Sbjct: 52 EKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYD 111
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+T R+++ + + + + + ++++GNKADL+ QR V+ +A+ A + + ++
Sbjct: 112 ITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADLEAQRDVTYEEAKQFAEENGLLFL 170
Query: 123 ECSAKVRINVDQAFHELVR 141
E SAK NV+ AF E +
Sbjct: 171 EASAKTGENVEDAFLEAAK 189
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 3 IESYFVTDYDPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVF 61
IE F D + TI + + + + +L I DTAGQE F ++ Y R G LLV+
Sbjct: 32 IEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 91
Query: 62 SVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPY 121
+T R ++ + + R+ +++ GNK DLD R+V+ ++A A++ + +
Sbjct: 92 DITSRETYNALTNWLTDA-RMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMF 150
Query: 122 IECSAKVRINVDQAFHELVRIVL 144
+E SA +V++AF + R +L
Sbjct: 151 LETSALTGEDVEEAFVQCARKIL 173
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 71/140 (50%), Gaps = 2/140 (1%)
Query: 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVF 61
+E F + +PTI S+ TK + + I DTAGQE F A+ Y R ++V+
Sbjct: 26 VEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVY 85
Query: 62 SVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPY 121
+T +F + + R+ LR + + GNK DL R+V DA++ A + +
Sbjct: 86 DITKEETFSTLKNWVRE-LRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIF 144
Query: 122 IECSAKVRINVDQAFHELVR 141
+E SAK IN+++ F E+ R
Sbjct: 145 VETSAKNAININELFIEISR 164
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 71/131 (54%), Gaps = 2/131 (1%)
Query: 12 DPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFE 70
+ TI ++ Q V +DD + +I DTAGQE + ++ Y R + ++V+ +T+ ++F
Sbjct: 33 ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFA 92
Query: 71 EIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRI 130
+ +++ R + + + GNKADL +R V +AQ A + ++E SAK +
Sbjct: 93 RAKNWVKELQR-QASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAM 151
Query: 131 NVDQAFHELVR 141
NV++ F + +
Sbjct: 152 NVNEIFMAIAK 162
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Query: 20 TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQI 79
T+ +++ + I DTAG E + A+ Y R G L+V+ ++ +S+E + +
Sbjct: 49 TRTIEVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTE- 107
Query: 80 LRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHEL 139
LR D + ++GNK+DL H R V + +A+N A + ++ + E SA NVD+AF EL
Sbjct: 108 LRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFREL 167
Query: 140 V 140
+
Sbjct: 168 I 168
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 11 YDPTIE-----DSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
+DP + D K +D A+L I DTAGQE F + Y R +G +LV+ VT
Sbjct: 40 FDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTR 99
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
R++F ++ + ++ R++ +VGNK D ++ R+V + AR+ +IE S
Sbjct: 100 RDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKEN-REVDRNEGLKFARKHSXLFIEAS 158
Query: 126 AKVRINVDQAFHELVRIVL 144
AK V AF ELV ++
Sbjct: 159 AKTCDGVQCAFEELVEKII 177
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 70/131 (53%), Gaps = 2/131 (1%)
Query: 12 DPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFE 70
+ TI ++ Q V +DD + +I DTAGQE + ++ Y R + ++V+ +T+ SF
Sbjct: 37 ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFA 96
Query: 71 EIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRI 130
+ +++ R + + + GNKADL ++R V +AQ+ A + + E SAK
Sbjct: 97 RAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSX 155
Query: 131 NVDQAFHELVR 141
NV++ F + +
Sbjct: 156 NVNEIFXAIAK 166
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 3/142 (2%)
Query: 4 ESYFVTDYDPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
++ F Y TI + + V I+ +L I DTAGQE F + Y R G ++V+
Sbjct: 31 DNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 90
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
VT SF + ++ +I ++ D+ ++VGNK D ++ V + DA A Q+ I
Sbjct: 91 VTSAESFVNVKRWLHEI--NQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLF 148
Query: 123 ECSAKVRINVDQAFHELVRIVL 144
E SAK +NV++ F+ + +VL
Sbjct: 149 ETSAKENVNVEEMFNCITELVL 170
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 2/140 (1%)
Query: 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVF 61
++ +F + PTI S+ TK + + I DTAGQE F ++ Y R ++V+
Sbjct: 44 VQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVY 103
Query: 62 SVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPY 121
+T ++SF + K+ ++ L+ + M + GNK DL R+V DA+ A +
Sbjct: 104 DITKQDSFYTLKKWVKE-LKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIV 162
Query: 122 IECSAKVRINVDQAFHELVR 141
+E SAK IN+++ F + R
Sbjct: 163 VETSAKNAINIEELFQGISR 182
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Query: 20 TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQI 79
T+ +D + I DTAGQE + A+ Y R G LLV+ + ++E + ++ ++
Sbjct: 59 TRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE- 117
Query: 80 LRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHEL 139
LR +++VGNK+DL H R V + +A+ A + + +IE SA NV+ AF +
Sbjct: 118 LRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 177
Query: 140 V 140
+
Sbjct: 178 L 178
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Query: 20 TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQI 79
T+ +D + I DTAGQE + A+ Y R G LLV+ + ++E + ++ ++
Sbjct: 68 TRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE- 126
Query: 80 LRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHEL 139
LR +++VGNK+DL H R V + +A+ A + + +IE SA NV+ AF +
Sbjct: 127 LRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186
Query: 140 V 140
+
Sbjct: 187 L 187
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+L I DTAGQE F + + Y RS G +L + +T R+SF + + + + +
Sbjct: 79 KLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN-IVQ 137
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAF 136
L++GNK+DL R+VS +AQ++A I IE SAK NV++AF
Sbjct: 138 LLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F ++Y PT+ D+Y +I P L + DTAGQE++ +R + FL+ FSV
Sbjct: 28 FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 87
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
+SFE + K+ +I + P L+VG + DL + Q+ ++ A+ +
Sbjct: 88 SSFENVKEKWVPEITHHCPKT--PFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKL 145
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
AR L+ + Y+ECSA + + F E + L
Sbjct: 146 ARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F ++Y PT+ D+Y +I P L + DTAGQE++ +R + FL+ FSV
Sbjct: 32 FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 91
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
+SFE + K+ +I + P L+VG + DL + Q+ ++ A+ +
Sbjct: 92 SSFENVKEKWVPEITHHCPKT--PFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKL 149
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
AR L+ + Y+ECSA + + F E + L
Sbjct: 150 ARDLKAVKYVECSALTQKGLKNVFDEAILAAL 181
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F ++Y PT+ D+Y +I P L + DTAGQE++ +R + FL+ FSV
Sbjct: 31 FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 90
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
+SFE + K+ +I + P L+VG + DL + Q+ ++ A+ +
Sbjct: 91 SSFENVKEKWVPEITHHCPKT--PFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKL 148
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
AR L+ + Y+ECSA + + F E + L
Sbjct: 149 ARDLKAVKYVECSALTQKGLKNVFDEAILAAL 180
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F ++Y PT+ D+Y +I P L + DTAGQE++ +R + FL+ FSV
Sbjct: 30 FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 89
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
+SFE + K+ +I + P L+VG + DL + Q+ ++ A+ +
Sbjct: 90 SSFENVKEKWVPEITHHCPKT--PFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKL 147
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
AR L+ + Y+ECSA + + F E + L
Sbjct: 148 ARDLKAVKYVECSALTQKGLKNVFDEAILAAL 179
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F ++Y PT+ D+Y +I P L + DTAGQE++ +R + FL+ FSV
Sbjct: 28 FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 87
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
+SFE + K+ +I + P L+VG + DL + Q+ ++ A+ +
Sbjct: 88 SSFENVKEKWVPEITHHCPKT--PFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKL 145
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
AR L+ + Y+ECSA + + F E + L
Sbjct: 146 ARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F ++Y PT+ D+Y +I P L + DTAGQE++ +R + FL+ FSV
Sbjct: 28 FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 87
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
+SFE + K+ +I + P L+VG + DL + Q+ ++ A+ +
Sbjct: 88 SSFENVKEKWVPEITHHCPKT--PFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKL 145
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
AR L+ + Y+ECSA + + F E + L
Sbjct: 146 ARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F ++Y PT+ D+Y +I P L + DTAGQE++ +R + FL+ FSV
Sbjct: 28 FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 87
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
+SFE + K+ +I + P L+VG + DL + Q+ ++ A+ +
Sbjct: 88 SSFENVKEKWVPEITHHCPKT--PFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKL 145
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
AR L+ + Y+ECSA + + F E + L
Sbjct: 146 ARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F ++Y PT+ D+Y +I P L + DTAGQE++ +R + FL+ FSV
Sbjct: 28 FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 87
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
+SFE + K+ +I + P L+VG + DL + Q+ ++ A+ +
Sbjct: 88 SSFENVKEKWVPEITHHCPKT--PFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKL 145
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
AR L+ + Y+ECSA + + F E + L
Sbjct: 146 ARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F ++Y PT+ D+Y +I P L + DTAGQE++ +R + FL+ FSV
Sbjct: 30 FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 89
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
+SFE + K+ +I + P L+VG + DL + Q+ ++ A+ +
Sbjct: 90 SSFENVKEKWVPEITHHCPKT--PFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKL 147
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
AR L+ + Y+ECSA + + F E + L
Sbjct: 148 ARDLKAVKYVECSALTQKGLKNVFDEAILAAL 179
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F ++Y PT+ D+Y +I P L + DTAGQE++ +R + FL+ FSV
Sbjct: 38 FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 97
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
+SFE + K+ +I + P L+VG + DL + Q+ ++ A+ +
Sbjct: 98 SSFENVKEKWVPEITHHCPKT--PFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKL 155
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
AR L+ + Y+ECSA + + F E + L
Sbjct: 156 ARDLKAVKYVECSALTQKGLKNVFDEAILAAL 187
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F ++Y PT+ D+Y +I P L + DTAGQE++ +R + FL+ FSV
Sbjct: 31 FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 90
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
+SFE + K+ +I + P L+VG + DL + Q+ ++ A+ +
Sbjct: 91 SSFENVKEKWVPEITHHCPKT--PFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKL 148
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
AR L+ + Y+ECSA + + F E + L
Sbjct: 149 ARDLKAVKYVECSALTQKGLKNVFDEAILAAL 180
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 71/131 (54%), Gaps = 2/131 (1%)
Query: 12 DPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFE 70
+ TI ++ Q V +DD + +I DTAGQE + ++ Y R + ++V+ +T++ +F
Sbjct: 38 ESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFA 97
Query: 71 EIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRI 130
+ +++ R + + + GNKADL ++R V +AQ A + ++E SAK +
Sbjct: 98 RAKTWVKELQR-QASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAM 156
Query: 131 NVDQAFHELVR 141
NV+ F + +
Sbjct: 157 NVNDLFLAIAK 167
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F ++Y PT+ D+Y +I P L + DTAGQE++ +R + FL+ FSV
Sbjct: 35 FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 94
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
+SFE + K+ +I + P L+VG + DL + Q+ ++ A+ +
Sbjct: 95 SSFENVKEKWVPEITHHCPKT--PFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKL 152
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
AR L+ + Y+ECSA + + F E + L
Sbjct: 153 ARDLKAVKYVECSALTQKGLKNVFDEAILAAL 184
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 71/131 (54%), Gaps = 2/131 (1%)
Query: 12 DPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFE 70
+ TI ++ Q V +DD + +I DTAG E + ++ Y R + ++V+ +T+ SF
Sbjct: 35 ESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFA 94
Query: 71 EIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRI 130
+ +++ R + + + GNKADL ++R V +AQ+ A + ++E SAK +
Sbjct: 95 RAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSM 153
Query: 131 NVDQAFHELVR 141
NV++ F + +
Sbjct: 154 NVNEIFMAIAK 164
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F ++Y PT+ D+Y +I P L + DTAGQE++ +R + FL+ FSV
Sbjct: 28 FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 87
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
+SFE + K+ +I + P L+VG + DL + Q+ ++ A+ +
Sbjct: 88 SSFENVKEKWVPEITHHCPKT--PFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKL 145
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
AR L+ + Y+ECSA + + F E + L
Sbjct: 146 ARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F ++Y PT+ D+Y +I P L + DTAGQE++ +R + FL+ FSV
Sbjct: 29 FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 88
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
+SFE + K+ +I + P L+VG + DL + Q+ ++ A+ +
Sbjct: 89 SSFENVKEKWVPEITHHCPKT--PFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKL 146
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
AR L+ + Y+ECSA + + F E + L
Sbjct: 147 ARDLKAVKYVECSALTQKGLKNVFDEAILAAL 178
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F ++Y PT+ D+Y +I P L + DTAGQE++ +R + FL+ FSV
Sbjct: 35 FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 94
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
+SFE + K+ +I + P L+VG + DL + Q+ ++ A+ +
Sbjct: 95 SSFENVKEKWVPEITHHCPKT--PFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKL 152
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
AR L+ + Y+ECSA + + F E + L
Sbjct: 153 ARDLKAVKYVECSALTQKGLKNVFDEAILAAL 184
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F ++Y PT+ D+Y +I P L + DTAGQE++ +R + FL+ FSV
Sbjct: 28 FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 87
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
+SFE + K+ +I + P L+VG + DL + Q+ ++ A+ +
Sbjct: 88 SSFENVKEKWVPEITHHCPKT--PFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKL 145
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
AR L+ + Y+ECSA + + F E + L
Sbjct: 146 ARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F ++Y PT+ D+Y +I P L + DTAGQE++ +R + FL+ FSV
Sbjct: 28 FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 87
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
+SFE + K+ +I + P L+VG + DL + Q+ ++ A+ +
Sbjct: 88 SSFENVKEKWVPEITHHCPKT--PFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKL 145
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
AR L+ + Y+ECSA + + F E + L
Sbjct: 146 ARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 68/128 (53%), Gaps = 5/128 (3%)
Query: 20 TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQI 79
T+ +D + I DTAGQE + + Y R G LLV+ + ++E + ++ ++
Sbjct: 44 TRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKE- 102
Query: 80 LRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFH-- 137
LR +++VGNK+DL H R V + +A+ A + + +IE SA NV++AF
Sbjct: 103 LRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162
Query: 138 --ELVRIV 143
E+ RIV
Sbjct: 163 LTEIYRIV 170
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F ++Y PT+ D+Y I P L + DTAGQE++ +R + FL+ FSV
Sbjct: 28 FPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 87
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
+SFE + K+ +I + P L+VG + DL + Q+ ++ A+ +
Sbjct: 88 SSFENVKEKWVPEITHHCPKT--PFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKL 145
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
AR L+ + Y+ECSA + + F E + L
Sbjct: 146 ARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 2/143 (1%)
Query: 3 IESYFVTDYDPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVF 61
IE F D + TI + + + + +L I DTAG E F ++ Y R G LLV+
Sbjct: 29 IEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVY 88
Query: 62 SVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPY 121
+T R ++ + + R+ +++ GNK DLD R+V+ ++A A++ + +
Sbjct: 89 DITSRETYNALTNWLTDA-RMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMF 147
Query: 122 IECSAKVRINVDQAFHELVRIVL 144
+E SA +V++AF + R +L
Sbjct: 148 LETSALTGEDVEEAFVQCARKIL 170
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 2/140 (1%)
Query: 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVF 61
+E F + +PTI S+ TK + + I DTAG E F A+ Y R ++V+
Sbjct: 27 VEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVY 86
Query: 62 SVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPY 121
+T +F + + R+ LR + + GNK DL R+V DA++ A + +
Sbjct: 87 DITKEETFSTLKNWVRE-LRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIF 145
Query: 122 IECSAKVRINVDQAFHELVR 141
+E SAK IN+++ F E+ R
Sbjct: 146 VETSAKNAININELFIEISR 165
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 70/131 (53%), Gaps = 2/131 (1%)
Query: 12 DPTIEDSYTKQCV-IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFE 70
+ TI ++ Q V +DD + +I DTAG E + ++ Y R + ++V+ +T+ ++F
Sbjct: 35 ESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFA 94
Query: 71 EIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRI 130
+ +++ R + + + GNKADL +R V +AQ A + ++E SAK +
Sbjct: 95 RAKNWVKELQR-QASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAM 153
Query: 131 NVDQAFHELVR 141
NV++ F + +
Sbjct: 154 NVNEIFMAIAK 164
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F ++Y PT+ D+Y +I P L + DTAGQE++ +R + FL+ FSV
Sbjct: 28 FPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 87
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
+SFE + K+ +I + P L+VG + DL + Q+ ++ A+ +
Sbjct: 88 SSFENVKEKWVPEITHHCPKT--PFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKL 145
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
AR L+ + Y+ECSA + + F E + L
Sbjct: 146 ARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 74/141 (52%), Gaps = 10/141 (7%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMR--EQYMRSGEGFLLVFSVT 64
F+++YDP +ED+Y+ + +D P L ++DTA + R E+Y+ FL+V+SV
Sbjct: 46 FISEYDPNLEDTYSSEETVDHQPVHLRVMDTA---DLDTPRNCERYLNWAHAFLVVYSV- 101
Query: 65 DRNSFEEIYKFHRQILRVKDRD---EFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPY 121
D + + ++L + ++ P L++GNK D+ RQV+ + +A + +
Sbjct: 102 DSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLF 161
Query: 122 IECSAKVRI-NVDQAFHELVR 141
E SA + +V FHE VR
Sbjct: 162 FEVSACLDFEHVQHVFHEAVR 182
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 16/150 (10%)
Query: 9 TDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNS 68
++Y PT+ D+Y +I P L + DTAGQE++ +R + FL+ FSV +S
Sbjct: 30 SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSS 89
Query: 69 FEEIY-KFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNVAR 115
FE + K+ +I + P L+VG + DL + Q+ ++ A+ +AR
Sbjct: 90 FENVKEKWVPEITHHCPKT--PFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLAR 147
Query: 116 QLR-IPYIECSAKVRINVDQAFHELVRIVL 144
L+ + Y+ECSA + + F E + L
Sbjct: 148 DLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F ++Y P + D+Y +I P L + DTAGQE++ +R + FL+ FSV
Sbjct: 28 FPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 87
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
+SFE + K+ +I + P L+VG + DL + Q+ ++ A+ +
Sbjct: 88 SSFENVKEKWVPEITHHCPKT--PFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKL 145
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
AR L+ + Y+ECSA + + F E + L
Sbjct: 146 ARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAGQE++ +R + FL+ FS+
Sbjct: 28 FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP 87
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADLDHQR------------QVSSMDAQNV 113
SFE + K++ ++ P+L+VG K DL + ++ +
Sbjct: 88 ASFENVRAKWYPEVRH--HCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAM 145
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
AR++ + Y+ECSA + + F E +R VL
Sbjct: 146 AREIGSVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAGQE++ +R + FL+ FS+
Sbjct: 29 FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP 88
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADLDHQR------------QVSSMDAQNV 113
SFE + K++ ++ P+L+VG K DL + ++ +
Sbjct: 89 ASFENVRAKWYPEVRH--HCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAM 146
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
AR++ + Y+ECSA + + F E +R VL
Sbjct: 147 AREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 16/155 (10%)
Query: 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSV 63
+ F Y PT+ + Y + P L I DTAGQ+++ +R + LL F V
Sbjct: 56 DGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDV 115
Query: 64 TDRNSFEEIYKFHRQILRVKDR-DEFPMLMVGNKADLDHQRQ------------VSSMDA 110
T NSF+ I F+R V + P+++VG K DL + V+
Sbjct: 116 TSPNSFDNI--FNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRG 173
Query: 111 QNVARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
Q +AR + + Y+ECSA++ NV F E + L
Sbjct: 174 QEMARSVGAVAYLECSARLHDNVHAVFQEAAEVAL 208
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAGQE++ +R + FL+ FS+
Sbjct: 29 FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP 88
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADLDHQR------------QVSSMDAQNV 113
SFE + K++ ++ P+L+VG K DL + ++ +
Sbjct: 89 ASFENVRAKWYPEVRH--HCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAM 146
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
AR++ + Y+ECSA + + F E +R VL
Sbjct: 147 AREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
Query: 20 TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQI 79
T+ +D + I DTAG E + A+ Y R G LLV+ + ++E + ++ ++
Sbjct: 47 TRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE- 105
Query: 80 LRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHEL 139
LR +++VGNK+DL H R V + +A+ A + + +IE SA NV+ AF +
Sbjct: 106 LRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 165
Query: 140 V 140
+
Sbjct: 166 L 166
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
Query: 20 TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQI 79
T+ +D + I DTAG E + A+ Y R G LLV+ + ++E + ++ ++
Sbjct: 68 TRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE- 126
Query: 80 LRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHEL 139
LR +++VGNK+DL H R V + +A+ A + + +IE SA NV+ AF +
Sbjct: 127 LRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186
Query: 140 V 140
+
Sbjct: 187 L 187
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F ++Y PT+ D+Y +I P L + DTAG E++ +R + FL+ FSV
Sbjct: 28 FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSP 87
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
+SFE + K+ +I + P L+VG + DL + Q+ ++ A+ +
Sbjct: 88 SSFENVKEKWVPEITHHCPKT--PFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKL 145
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
AR L+ + Y+ECSA + + F E + L
Sbjct: 146 ARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F ++Y PT+ D+Y +I P L + DTAG E++ +R + FL+ FSV
Sbjct: 32 FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSP 91
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
+SFE + K+ +I + P L+VG + DL + Q+ ++ A+ +
Sbjct: 92 SSFENVKEKWVPEITHHCPKT--PFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKL 149
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
AR L+ + Y+ECSA + + F E + L
Sbjct: 150 ARDLKAVKYVECSALTQKGLKNVFDEAILAAL 181
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 74/143 (51%), Gaps = 14/143 (9%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
+ T+Y PT D+++ +D P RL + DTAGQ+EF +R + + FLL FSV
Sbjct: 45 YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSP 104
Query: 67 NSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDH------------QRQVSSMDAQNVA 114
+SF+ + + +R + P+++VG ++DL ++ V A+ +A
Sbjct: 105 SSFQNVSEKWVPEIRCH-CPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLA 163
Query: 115 RQLRIP-YIECSAKVRINVDQAF 136
+++ YIECSA + N+ + F
Sbjct: 164 EEIKAASYIECSALTQKNLKEVF 186
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Query: 20 TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQI 79
T+ +D + I DTAG E + A+ Y R G LLV+ + ++E + ++ ++
Sbjct: 44 TRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE- 102
Query: 80 LRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHEL 139
LR + +VGNK+DL H R V + +A+ A + + +IE SA NV+ AF +
Sbjct: 103 LRDHADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 162
Query: 140 V 140
+
Sbjct: 163 L 163
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEF 88
P + ++ DTAGQE+F +R+ Y + +++F VT R +++ + +HR ++RV +
Sbjct: 58 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENI 115
Query: 89 PMLMVGNKADLDHQRQVSSMDAQNVA--RQLRIPYIECSAKVRINVDQAFHELVR 141
P+++ GNK D+ ++ + A+++ R+ + Y + SAK N ++ F L R
Sbjct: 116 PIVLCGNKVDIKDRK----VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEF 88
P + ++ DTAGQE+F +R+ Y + +++F VT R +++ + +HR ++RV +
Sbjct: 58 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENI 115
Query: 89 PMLMVGNKADLDHQRQVSSMDAQNVA--RQLRIPYIECSAKVRINVDQAFHELVR 141
P+++ GNK D+ ++ + A+++ R+ + Y + SAK N ++ F L R
Sbjct: 116 PIVLCGNKVDIKDRK----VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Query: 20 TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQI 79
T+ +D + I DTAG E + A+ Y R G LLV+ + ++E + ++ ++
Sbjct: 50 TRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE- 108
Query: 80 LRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHEL 139
LR + +VGNK+DL H R V + +A+ A + + +IE SA NV+ AF +
Sbjct: 109 LRDHADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 168
Query: 140 V 140
+
Sbjct: 169 L 169
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Query: 17 DSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFH 76
D K I+ +L I DTAGQE F ++ + Y RS +L + +T SF + ++
Sbjct: 62 DFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWL 121
Query: 77 RQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAF 136
R+I + ++ ++VGNK DL +R+VS A+ + + Y+E SAK NV++ F
Sbjct: 122 REIEQYAS-NKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF 180
Query: 137 HELVRIVLLHTKQ 149
+L ++ +Q
Sbjct: 181 LDLACRLISEARQ 193
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEF 88
P + ++ DTAGQE+F +R+ Y + +++F VT R +++ + +HR ++RV +
Sbjct: 51 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENI 108
Query: 89 PMLMVGNKADLDHQRQVSSMDAQNVA--RQLRIPYIECSAKVRINVDQAFHELVR 141
P+++ GNK D+ ++ + A+++ R+ + Y + SAK N ++ F L R
Sbjct: 109 PIVLCGNKVDIKDRK----VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 159
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 73/134 (54%), Gaps = 5/134 (3%)
Query: 7 FVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F + +PTI ++ T++ I++ + +I DTAGQE F+++ Y R+ + L+V+ VT
Sbjct: 28 FAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTK 87
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADL---DHQRQVSSMDAQNVARQLRIPYI 122
SF + + +++ +D + +VGNK D +R+V+ + + +A + + +
Sbjct: 88 PQSFIKARHWVKELHEQASKD-IIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFF 146
Query: 123 ECSAKVRINVDQAF 136
E SAK NV+ F
Sbjct: 147 ETSAKTGENVNDVF 160
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEF 88
P + ++ DTAGQE+F +R+ Y + +++F VT R +++ + +HR ++RV +
Sbjct: 58 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENI 115
Query: 89 PMLMVGNKADLDHQRQVSSMDAQNVA--RQLRIPYIECSAKVRINVDQAFHELVR 141
P+++ GNK D+ ++ + A+++ R+ + Y + SAK N ++ F L R
Sbjct: 116 PIVLCGNKVDIKDRK----VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAGQE++ +R + FL+ FS+
Sbjct: 28 FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP 87
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL-DHQRQVSSMDAQNV----------- 113
SFE + K++ ++ P+++VG K DL D + + + + +
Sbjct: 88 ASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 145
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A+++ + Y+ECSA + + F E +R VL
Sbjct: 146 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAGQE++ +R + FL+ FS+
Sbjct: 28 FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP 87
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL-DHQRQVSSMDAQNV----------- 113
SFE + K++ ++ P+++VG K DL D + + + + +
Sbjct: 88 ASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 145
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A+++ + Y+ECSA + + F E +R VL
Sbjct: 146 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAGQE++ +R + FL+ FS+
Sbjct: 28 FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP 87
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL-DHQRQVSSMDAQNV----------- 113
SFE + K++ ++ P+++VG K DL D + + + + +
Sbjct: 88 ASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 145
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A+++ + Y+ECSA + + F E +R VL
Sbjct: 146 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAGQE++ +R + FL+ FS+
Sbjct: 28 FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP 87
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL-DHQRQVSSMDAQNV----------- 113
SFE + K++ ++ P+++VG K DL D + + + + +
Sbjct: 88 ASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 145
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A+++ + Y+ECSA + + F E +R VL
Sbjct: 146 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAGQE++ +R + FL+ FS+
Sbjct: 28 FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP 87
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL-DHQRQVSSMDAQNV----------- 113
SFE + K++ ++ P+++VG K DL D + + + + +
Sbjct: 88 ASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 145
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A+++ + Y+ECSA + + F E +R VL
Sbjct: 146 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAGQE++ +R + FL+ FS+
Sbjct: 38 FSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP 97
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL-DHQRQVSSMDAQNV----------- 113
SFE + K++ ++ P+++VG K DL D + + + + +
Sbjct: 98 ASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 155
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A+++ + Y+ECSA + + F E +R VL
Sbjct: 156 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 187
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAGQE++ +R + FL+ FS+
Sbjct: 47 FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP 106
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL-DHQRQVSSMDAQNV----------- 113
SFE + K++ ++ P+++VG K DL D + + + + +
Sbjct: 107 ASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 164
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A+++ + Y+ECSA + + F E +R VL
Sbjct: 165 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 196
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEF 88
P + ++ DTAGQE+F +R+ Y + +++F VT R +++ + +HR ++RV +
Sbjct: 58 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENI 115
Query: 89 PMLMVGNKADLDHQRQVSSMDAQNVA--RQLRIPYIECSAKVRINVDQAFHELVR 141
P+++ GNK D+ ++ + A+++ R+ + Y + SAK N ++ F L R
Sbjct: 116 PIVLCGNKVDIKDRK----VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEF 88
P + ++ DTAGQE+F +R+ Y + +++F VT R +++ + +HR ++RV +
Sbjct: 58 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENI 115
Query: 89 PMLMVGNKADLDHQRQVSSMDAQNVA--RQLRIPYIECSAKVRINVDQAFHELVR 141
P+++ GNK D+ ++ + A+++ R+ + Y + SAK N ++ F L R
Sbjct: 116 PIVLCGNKVDIKDRK----VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAGQE++ +R + FL+ FS+
Sbjct: 35 FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP 94
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL-DHQRQVSSMDAQNV----------- 113
SFE + K++ ++ P+++VG K DL D + + + + +
Sbjct: 95 ASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 152
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A+++ + Y+ECSA + + F E +R VL
Sbjct: 153 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 184
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAGQE++ +R + FL+ FS+
Sbjct: 55 FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP 114
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL-DHQRQVSSMDAQNV----------- 113
SFE + K++ ++ P+++VG K DL D + + + + +
Sbjct: 115 ASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 172
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A+++ + Y+ECSA + + F E +R VL
Sbjct: 173 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEF 88
P + ++ DTAGQE+F +R+ Y + +++F VT R +++ + +HR ++RV +
Sbjct: 63 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENI 120
Query: 89 PMLMVGNKADLDHQRQVSSMDAQNVA--RQLRIPYIECSAKVRINVDQAFHELVR 141
P+++ GNK D+ ++ + A+++ R+ + Y + SAK N ++ F L R
Sbjct: 121 PIVLCGNKVDIKDRK----VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 171
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEF 88
P + ++ DTAGQE+F +R+ Y + +++F VT R +++ + +HR ++RV +
Sbjct: 63 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENI 120
Query: 89 PMLMVGNKADLDHQRQVSSMDAQNVA--RQLRIPYIECSAKVRINVDQAFHELVR 141
P+++ GNK D+ ++ + A+++ R+ + Y + SAK N ++ F L R
Sbjct: 121 PIVLCGNKVDIKDRK----VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 171
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 65/115 (56%), Gaps = 8/115 (6%)
Query: 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEF 88
P + ++ DTAGQE+F +R+ Y + ++ F VT R +++ + +HR ++RV +
Sbjct: 58 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRV--CENI 115
Query: 89 PMLMVGNKADLDHQRQVSSMDAQNVA--RQLRIPYIECSAKVRINVDQAFHELVR 141
P+++ GNK D+ ++ + A+++ R+ + Y + SAK N ++ F L R
Sbjct: 116 PIVLCGNKVDIKDRK----VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEF 88
P + ++ DTAGQE++ +R+ Y + +++F VT R +++ + +HR ++RV +
Sbjct: 58 PIKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENI 115
Query: 89 PMLMVGNKADLDHQRQVSSMDAQNVA--RQLRIPYIECSAKVRINVDQAFHELVR 141
P+++ GNK D+ ++ + A+++ R+ + Y + SAK N ++ F L R
Sbjct: 116 PIVLCGNKVDIKDRK----VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 16/151 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAGQE++ +R + FL+ FS+
Sbjct: 28 FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP 87
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL-DHQRQVSSMDAQNV----------- 113
SFE + K++ ++ P+++VG K DL D + + + + +
Sbjct: 88 ASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 145
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIV 143
A+++ + Y+ECSA + + F E +R V
Sbjct: 146 AKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 75/149 (50%), Gaps = 16/149 (10%)
Query: 10 DYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSF 69
+Y PT+ D+Y+ ++D P L + DTAGQE++ +R + FL+ FS+ SF
Sbjct: 58 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 117
Query: 70 EEI-YKFHRQILRVKDRDEFPMLMVGNKADL-DHQRQVSSMDAQNV-----------ARQ 116
E + K++ ++ P+++VG K DL D + + + + + A++
Sbjct: 118 ENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 175
Query: 117 L-RIPYIECSAKVRINVDQAFHELVRIVL 144
+ + Y+ECSA + + F E +R VL
Sbjct: 176 IGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 65/115 (56%), Gaps = 8/115 (6%)
Query: 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEF 88
P + ++ DTAGQE+F + + Y + +++F VT R +++ + +HR ++RV +
Sbjct: 58 PIKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--I 115
Query: 89 PMLMVGNKADLDHQRQVSSMDAQNVA--RQLRIPYIECSAKVRINVDQAFHELVR 141
P+++ GNK D+ ++ + A+++ R+ + Y + SAK N ++ F L R
Sbjct: 116 PIVLCGNKVDIKDRK----VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 63/111 (56%), Gaps = 4/111 (3%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+ D+ DTAG E+F +R+ Y + + +++F VT R +++ + +HR ++RV + P+
Sbjct: 54 KFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPI 111
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVR 141
++ GNK D+ +R+V + R+ + Y + SAK N ++ F L R
Sbjct: 112 VLCGNKVDVK-ERKVKA-KTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR 160
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAGQE++ +R + FL+ FS+
Sbjct: 34 FPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP 93
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADLDHQR------------QVSSMDAQNV 113
S+E + K+ ++ P+++VG K DL + ++ +
Sbjct: 94 ASYENVRAKWFPEVRH--HCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLAL 151
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A+++ + Y+ECSA + + F E +R VL
Sbjct: 152 AKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 183
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 63/111 (56%), Gaps = 4/111 (3%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+ D+ DTAG E+F +R+ Y + + +++F VT R +++ + +HR ++RV + P+
Sbjct: 55 KFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPI 112
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVR 141
++ GNK D+ +R+V + R+ + Y + SAK N ++ F L R
Sbjct: 113 VLCGNKVDVK-ERKVKA-KTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR 161
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAGQE++ +R + FL+ FS+
Sbjct: 28 FPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP 87
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL-DHQRQVSSMDAQNVARQL------- 117
S+E + K+ ++ P+++VG K DL D + + + + +A
Sbjct: 88 ASYENVRAKWFPEVRH--HCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLAL 145
Query: 118 -----RIPYIECSAKVRINVDQAFHELVRIVL 144
+ Y+ECSA + + F E +R VL
Sbjct: 146 AKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 65/115 (56%), Gaps = 8/115 (6%)
Query: 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEF 88
P + ++ DTAG E+F +R+ Y + +++F VT R +++ + +HR ++RV +
Sbjct: 54 PIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENI 111
Query: 89 PMLMVGNKADLDHQRQVSSMDAQNVA--RQLRIPYIECSAKVRINVDQAFHELVR 141
P+++ GNK D+ ++ + A+++ R+ + Y + SAK N ++ F L R
Sbjct: 112 PIVLCGNKVDIKDRK----VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 162
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAGQE++ +R + FL+ FS+
Sbjct: 35 FPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP 94
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADLDHQR------------QVSSMDAQNV 113
S+E + K+ ++ P+++VG K DL + ++ +
Sbjct: 95 ASYENVRAKWFPEVRH--HCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLAL 152
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A+++ + Y+ECSA + + F E +R VL
Sbjct: 153 AKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 184
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 65/115 (56%), Gaps = 8/115 (6%)
Query: 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEF 88
P + ++ DTAG E+F +R+ Y + +++F VT R +++ + +HR ++RV +
Sbjct: 60 PIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENI 117
Query: 89 PMLMVGNKADLDHQRQVSSMDAQNVA--RQLRIPYIECSAKVRINVDQAFHELVR 141
P+++ GNK D+ ++ + A+++ R+ + Y + SAK N ++ F L R
Sbjct: 118 PIVLCGNKVDIKDRK----VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 168
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAG E++ +R + FL+ FS+
Sbjct: 28 FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSP 87
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL-DHQRQVSSMDAQNV----------- 113
SFE + K++ ++ P+++VG K DL D + + + + +
Sbjct: 88 ASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 145
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A+++ + Y+ECSA + + F E +R VL
Sbjct: 146 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAG E++ +R + FL+ FS+
Sbjct: 31 FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSP 90
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL-DHQRQVSSMDAQNV----------- 113
SFE + K++ ++ P+++VG K DL D + + + + +
Sbjct: 91 ASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 148
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A+++ + Y+ECSA + + F E +R VL
Sbjct: 149 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 180
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 63/111 (56%), Gaps = 4/111 (3%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+ D+ DTAG E+F +R+ Y + + +++F VT R +++ + +HR ++RV + P+
Sbjct: 62 KFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPI 119
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVR 141
++ GNK D+ +R+V + R+ + Y + SAK N ++ F L R
Sbjct: 120 VLCGNKVDV-KERKVKA-KTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR 168
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAG E++ +R + FL+ FS+
Sbjct: 28 FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSP 87
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL-DHQRQVSSMDAQNV----------- 113
SFE + K++ ++ P+++VG K DL D + + + + +
Sbjct: 88 ASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 145
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A+++ + Y+ECSA + + F E +R VL
Sbjct: 146 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAG E++ +R + FL+ FS+
Sbjct: 55 FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSP 114
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL-DHQRQVSSMDAQNV----------- 113
SFE + K++ ++ P+++VG K DL D + + + + +
Sbjct: 115 ASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 172
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A+++ + Y+ECSA + + F E +R VL
Sbjct: 173 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 65/115 (56%), Gaps = 8/115 (6%)
Query: 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEF 88
P + ++ DTAG E+F +R+ Y + +++F VT R +++ + +HR ++RV +
Sbjct: 58 PIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENI 115
Query: 89 PMLMVGNKADLDHQRQVSSMDAQNVA--RQLRIPYIECSAKVRINVDQAFHELVR 141
P+++ GNK D+ ++ + A+++ R+ + Y + SAK N ++ F L R
Sbjct: 116 PIVLCGNKVDIKDRK----VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAGQE++ +R + L+ FS+
Sbjct: 32 FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSP 91
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL-DHQRQVSSMDAQNV----------- 113
SFE + K++ ++ P+++VG K DL D + + + + +
Sbjct: 92 ASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 149
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A+++ + Y+ECSA + + F E +R VL
Sbjct: 150 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 181
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAGQE++ +R + L+ FS+
Sbjct: 28 FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSP 87
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL-DHQRQVSSMDAQNV----------- 113
SFE + K++ ++ P+++VG K DL D + + + + +
Sbjct: 88 ASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 145
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A+++ + Y+ECSA + + F E +R VL
Sbjct: 146 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAGQE++ +R + L+ FS+
Sbjct: 28 FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSP 87
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL-DHQRQVSSMDAQNV----------- 113
SFE + K++ ++ P+++VG K DL D + + + + +
Sbjct: 88 ASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 145
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A+++ + Y+ECSA + + F E +R VL
Sbjct: 146 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAGQE++ +R + L+ FS+
Sbjct: 30 FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSP 89
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL-DHQRQVSSMDAQNV----------- 113
SFE + K++ ++ P+++VG K DL D + + + + +
Sbjct: 90 ASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 147
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A+++ + Y+ECSA + + F E +R VL
Sbjct: 148 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 5/124 (4%)
Query: 20 TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQI 79
T+ ++ + I DTAG E + A+ Y R G LLVF +T ++ + ++ +++
Sbjct: 49 TRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKEL 108
Query: 80 LRVKDRDEFPM--LMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFH 137
D E + ++VGNK+DL R+V + +A+ A + ++E SA NV+ AF
Sbjct: 109 Y---DHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFE 165
Query: 138 ELVR 141
+++
Sbjct: 166 TVLK 169
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 5/124 (4%)
Query: 20 TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQI 79
T+ ++ + I DTAG E + A+ Y R G LLVF +T ++ + ++ +++
Sbjct: 64 TRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKEL 123
Query: 80 LRVKDRDEFPM--LMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFH 137
D E + ++VGNK+DL R+V + +A+ A + ++E SA NV+ AF
Sbjct: 124 Y---DHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFE 180
Query: 138 ELVR 141
+++
Sbjct: 181 TVLK 184
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAG E++ +R + FL+ FS+
Sbjct: 180 FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSP 239
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL-DHQRQVSSMDAQNV----------- 113
SF + K++ ++ P+++VG K DL D + + + + +
Sbjct: 240 ASFHHVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 297
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A+++ + Y+ECSA + + F E +R VL
Sbjct: 298 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAG E++ +R + FL+ FS+
Sbjct: 180 FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSP 239
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL-DHQRQVSSMDAQNV----------- 113
SF + K++ ++ P+++VG K DL D + + + + +
Sbjct: 240 ASFHHVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 297
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A+++ + Y+ECSA + + F E +R VL
Sbjct: 298 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAG E++ +R + FL+ FS+
Sbjct: 180 FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSP 239
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL-DHQRQVSSMDAQNV----------- 113
SF + K++ ++ P+++VG K DL D + + + + +
Sbjct: 240 ASFHHVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 297
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A+++ + Y+ECSA + + F E +R VL
Sbjct: 298 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 21 KQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80
K ++D L + DTAGQE F ++ + Y R +G LL++ VT SF I ++ ++
Sbjct: 68 KTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREW-VDMI 126
Query: 81 RVKDRDEFPMLMVGNKADL------DHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQ 134
+ P+++VGNKAD+ + Q+ V + +A + E SAK N+ +
Sbjct: 127 EDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVE 186
Query: 135 AFHELVRIV 143
A L R V
Sbjct: 187 AVLHLAREV 195
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 16/149 (10%)
Query: 11 YDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFE 70
Y PT+ ++Y +D L + DTAGQE++ +R L+ FS+ +S E
Sbjct: 39 YVPTVFENYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLE 98
Query: 71 EIY-KFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNVARQL 117
+ K+ ++L P+++VG K DL + Q+ V+S + Q+VA Q+
Sbjct: 99 NVQEKWIAEVLHFCQG--VPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQI 156
Query: 118 R-IPYIECSAKVRINVDQAFHELVRIVLL 145
Y ECSAK V + F R L+
Sbjct: 157 GATGYYECSAKTGYGVREVFEAATRASLM 185
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 35/171 (20%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMR---------EQYMRS---- 53
F +Y PT+ D+Y+ ++D P L + DTAGQE++ +R E Y +
Sbjct: 30 FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKDITSR 89
Query: 54 ------GEGFLLVFSVTDRNSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL-DHQRQV 105
+ FL+ FS+ SFE + K++ ++ P+++VG K DL D + +
Sbjct: 90 GKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTI 147
Query: 106 SSMDAQNV-----------ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
+ + + A+++ + Y+ECSA + + F E +R VL
Sbjct: 148 EKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 198
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 3/142 (2%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPA--RLDILDTAGQEEFSAMREQYMRSGEGFLLV 60
++ F +Y+ T+ +DD + ++ DTAGQE+ + +++ Y G +L
Sbjct: 32 LDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILF 91
Query: 61 FSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIP 120
F VT R + + + ++ ++ V +E P+++ NK D+ +++++S V +
Sbjct: 92 FDVTSRITCQNLARWVKEFQAVVG-NEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYE 150
Query: 121 YIECSAKVRINVDQAFHELVRI 142
Y E SAK N F L RI
Sbjct: 151 YFEISAKTAHNFGLPFLHLARI 172
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 25 IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD 84
+D +L I DTAGQE F + Y R G ++V+ VTD+ SF + ++ ++I R
Sbjct: 42 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA- 100
Query: 85 RDEFPMLMVGNKADL 99
+ L+VGNK DL
Sbjct: 101 SENVNKLLVGNKCDL 115
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+ DI DTAGQE ++++ Y R ++VF +++ N+ + + Q+ K + +
Sbjct: 94 KFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQL---KISSNYII 150
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHEL 139
++V NK D ++ QV ++ Q A+ + +I+ SAK N+ F+ L
Sbjct: 151 ILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYML 198
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F Y PT+ ++Y +D L + DTAGQE++ +R + L+ FS+
Sbjct: 50 FPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 109
Query: 67 NSFEEIYKFHRQILRVKD-RDEFPMLMVGNKADL---DHQRQ---------VSSMDAQNV 113
+S E I + + VK P+++VGNK DL +H R+ V S + +++
Sbjct: 110 DSLENIPE--KWTPEVKHFXPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDM 167
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
A ++ Y+ECSAK + V + F R L
Sbjct: 168 ANRISAFGYLECSAKTKEGVREVFEMATRAGL 199
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F Y PT+ ++Y +D L + DTAGQE++ +R + L+ FS+
Sbjct: 50 FPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 109
Query: 67 NSFEEIYKFHRQILRVKD-RDEFPMLMVGNKADL---DHQRQ---------VSSMDAQNV 113
+S E I + + VK P+++VGNK DL +H R+ V S + +++
Sbjct: 110 DSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDM 167
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
A ++ Y+ECSAK + V + F R L
Sbjct: 168 ANRISAFGYLECSAKTKEGVREVFEMATRAGL 199
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F Y PT+ ++Y +D L + DTAGQE++ +R + L+ FS+
Sbjct: 30 FPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 89
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL---DHQRQ---------VSSMDAQNV 113
+S E I K+ ++ P+++VGNK DL +H R+ V S + +++
Sbjct: 90 DSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDM 147
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
A ++ Y+ECSAK + V + F R L
Sbjct: 148 ANRISAFGYLECSAKTKEGVREVFEMATRAGL 179
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 16/161 (9%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F Y PT+ ++Y +D L + DTAGQE++ +R + L+ FS+
Sbjct: 33 FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 92
Query: 67 NSFEEIYKFHRQILRVKD-RDEFPMLMVGNKADL---DHQRQ---------VSSMDAQNV 113
+S E I + VK P+++VGNK DL +H R+ V + +++
Sbjct: 93 DSLENIP--EKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 150
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVLLHTKQCKNS 153
A ++ Y+ECSAK + V + F R L + K S
Sbjct: 151 ANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKS 191
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 16/161 (9%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F Y PT+ ++Y +D L + DTAGQE++ +R + L+ FS+
Sbjct: 32 FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 91
Query: 67 NSFEEIYKFHRQILRVKD-RDEFPMLMVGNKADL---DHQRQ---------VSSMDAQNV 113
+S E I + VK P+++VGNK DL +H R+ V + +++
Sbjct: 92 DSLENIP--EKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 149
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVLLHTKQCKNS 153
A ++ Y+ECSAK + V + F R L + K S
Sbjct: 150 ANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKS 190
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 16/161 (9%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F Y PT+ ++Y +D L + DTAGQE++ +R + L+ FS+
Sbjct: 32 FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 91
Query: 67 NSFEEIYKFHRQILRVKD-RDEFPMLMVGNKADL---DHQRQ---------VSSMDAQNV 113
+S E I + + VK P+++VGNK DL +H R+ V + +++
Sbjct: 92 DSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 149
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVLLHTKQCKNS 153
A ++ Y+ECSAK + V + F R L + K S
Sbjct: 150 ANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKS 190
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 16/161 (9%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F Y PT+ ++Y +D L + DTAGQE++ +R + L+ FS+
Sbjct: 30 FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 89
Query: 67 NSFEEIYKFHRQILRVKD-RDEFPMLMVGNKADL---DHQRQ---------VSSMDAQNV 113
+S E I + VK P+++VGNK DL +H R+ V + +++
Sbjct: 90 DSLENIP--EKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 147
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVLLHTKQCKNS 153
A ++ Y+ECSAK + V + F R L + K S
Sbjct: 148 ANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKS 188
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 16/161 (9%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F Y PT+ ++Y +D L + DTAGQE++ +R + L+ FS+
Sbjct: 30 FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 89
Query: 67 NSFEEIYKFHRQILRVKD-RDEFPMLMVGNKADL---DHQRQ---------VSSMDAQNV 113
+S E I + VK P+++VGNK DL +H R+ V + +++
Sbjct: 90 DSLENIP--EKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 147
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVLLHTKQCKNS 153
A ++ Y+ECSAK + V + F R L + K S
Sbjct: 148 ANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKS 188
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F Y PT+ ++Y +D L + DTAGQE++ +R + L+ FS+
Sbjct: 28 FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 87
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL---DHQRQ---------VSSMDAQNV 113
+S E I K+ ++ P+++VGNK DL +H R+ V + +++
Sbjct: 88 DSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 145
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A ++ Y+ECSAK + V + F R L
Sbjct: 146 ANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 16/161 (9%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F Y PT+ ++Y +D L + DTAGQE++ +R + L+ FS+
Sbjct: 30 FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 89
Query: 67 NSFEEIYKFHRQILRVKD-RDEFPMLMVGNKADL---DHQRQ---------VSSMDAQNV 113
+S E I + VK P+++VGNK DL +H R+ V + +++
Sbjct: 90 DSLENIP--EKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 147
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVLLHTKQCKNS 153
A ++ Y+ECSAK + V + F R L + K S
Sbjct: 148 ANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKS 188
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F Y PT+ ++Y +D L + DTAGQE++ +R + L+ FS+
Sbjct: 28 FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 87
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL---DHQRQ---------VSSMDAQNV 113
+S E I K+ ++ P+++VGNK DL +H R+ V + +++
Sbjct: 88 DSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 145
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A ++ Y+ECSAK + V + F R L
Sbjct: 146 ANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F Y PT+ ++Y +D L + DTAGQE++ +R + L+ FS+
Sbjct: 30 FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 89
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL---DHQRQ---------VSSMDAQNV 113
+S E I K+ ++ P+++VGNK DL +H R+ V + +++
Sbjct: 90 DSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 147
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A ++ Y+ECSAK + V + F R L
Sbjct: 148 ANRIGAFGYMECSAKTKDGVREVFEMATRAAL 179
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 16/148 (10%)
Query: 11 YDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFE 70
Y PT+ ++Y +D L + DTAGQE++ +R + L+ FS+ +S E
Sbjct: 36 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 95
Query: 71 EIYKFHRQILRVKD-RDEFPMLMVGNKADL---DHQRQ---------VSSMDAQNVARQL 117
I + + VK P+++VGNK DL +H R+ V + +++A ++
Sbjct: 96 NIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI 153
Query: 118 -RIPYIECSAKVRINVDQAFHELVRIVL 144
Y+ECSAK + V + F R L
Sbjct: 154 GAFGYMECSAKTKDGVREVFEMATRAAL 181
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F Y PT+ ++Y +D L + DTAGQE++ R + L+ FS+
Sbjct: 30 FPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSP 89
Query: 67 NSFEEIYKFHRQILRVKD-RDEFPMLMVGNKADLDH------------QRQVSSMDAQNV 113
+S E I + + VK P+++VGNK DL + Q V + +++
Sbjct: 90 DSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTARELAKMKQEPVKPAEGRDM 147
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A ++ Y+ECSAK + V + F R L
Sbjct: 148 ANRIGAFGYMECSAKTKDGVREVFEMATRAAL 179
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F Y PT+ ++Y +D L + DTAGQE++ +R + L+ FS+
Sbjct: 31 FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 90
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL---DHQRQ---------VSSMDAQNV 113
+S E I K+ ++ P+++VGNK DL +H R+ V + +++
Sbjct: 91 DSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 148
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A ++ Y+ECSAK + V + F R L
Sbjct: 149 ANRIGAFGYMECSAKTKDGVREVFEMATRAAL 180
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 16/148 (10%)
Query: 11 YDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFE 70
Y PT+ ++Y +D L + DTAGQE++ +R + L+ FS+ +S E
Sbjct: 35 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 94
Query: 71 EIYKFHRQILRVKD-RDEFPMLMVGNKADL---DHQRQ---------VSSMDAQNVARQL 117
I + + VK P+++VGNK DL +H R+ V + +++A ++
Sbjct: 95 NIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI 152
Query: 118 -RIPYIECSAKVRINVDQAFHELVRIVL 144
Y+ECSAK + V + F R L
Sbjct: 153 GAFGYMECSAKTKDGVREVFEMATRAAL 180
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F Y PT+ ++Y +D L + DTAGQE++ +R + L+ FS+
Sbjct: 34 FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 93
Query: 67 NSFEEIYKFHRQILRVKD-RDEFPMLMVGNKADL---DHQRQ---------VSSMDAQNV 113
+S E I + + VK P+++VGNK DL +H R+ V + +++
Sbjct: 94 DSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 151
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A ++ Y+ECSAK + V + F R L
Sbjct: 152 ANRIGAFGYMECSAKTKDGVREVFEMATRAAL 183
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 16/148 (10%)
Query: 11 YDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFE 70
Y PT+ ++Y +D L + DTAGQE++ +R + L+ FSV +S E
Sbjct: 54 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLE 113
Query: 71 EIYKFHRQILRVKD-RDEFPMLMVGNKADL---DHQR-QVSSMDAQNV------ARQLRI 119
I + + + VK P+++V NK DL +H R +++ M + V A +RI
Sbjct: 114 NIPE--KWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRI 171
Query: 120 P---YIECSAKVRINVDQAFHELVRIVL 144
Y+ECSAK + V + F R L
Sbjct: 172 QAYDYLECSAKTKEGVREVFETATRAAL 199
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 25 IDDIPARLDILDTAGQEEF-SAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83
ID ++ + DTAGQE F +M + Y R+ + V+ +T+ SF + + + +
Sbjct: 64 IDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL 123
Query: 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAK 127
++ P ++VGNK DL QV + AQ A +P E SAK
Sbjct: 124 LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAK 167
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 26 DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDR 85
++ L I D GQ M ++Y+ +G LLV+ +T+ SFE + ++ + +V +
Sbjct: 52 GNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEE 111
Query: 86 DEF-PML-MVGNKADLDHQRQV 105
E P++ +VGNK DL+H R +
Sbjct: 112 SETQPLVALVGNKIDLEHMRTI 133
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D Y + L + DTAGQE++ +R + FL+ FSV +
Sbjct: 43 FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNP 102
Query: 67 NSFEEIYKFHRQILRVKD-RDEFPMLMVGNKADL-DHQRQVSSMD-----------AQNV 113
SF+ + + + +K+ P L++G + DL D + ++ ++ Q +
Sbjct: 103 ASFQNVKE--EWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKL 160
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A+++ Y+ECSA + + F E + +L
Sbjct: 161 AKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 25 IDDIPARLDILDTAGQEEF-SAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83
ID ++ + DTAGQE F +M + Y R+ + V+ T+ SF + + + +
Sbjct: 73 IDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHL 132
Query: 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAK 127
++ P ++VGNK DL QV + AQ A P E SAK
Sbjct: 133 LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAK 176
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Query: 9 TDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNS 68
T Y PT+ ++++ + L + DTAGQEE+ +R + LL F+V +R S
Sbjct: 50 TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTS 109
Query: 69 FEEI-YKFHRQILRVKDRDEFPMLMVGNKADL--DHQRQVSSMDAQNVARQLR-IPYIEC 124
F+ I K+ +I D + ++VG K DL D V+ + ++ ++L + YIE
Sbjct: 110 FDNISTKWEPEIKHYIDTAK--TVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEA 167
Query: 125 SAKVRINVDQAFHELVRIVL 144
S+ +I +++ F + V +
Sbjct: 168 SSVAKIGLNEVFEKSVDCIF 187
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Query: 9 TDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNS 68
T Y PT+ ++++ + L + DTAGQEE+ +R + LL F+V +R S
Sbjct: 49 TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTS 108
Query: 69 FEEI-YKFHRQILRVKDRDEFPMLMVGNKADL--DHQRQVSSMDAQNVARQLR-IPYIEC 124
F+ I K+ +I D + ++VG K DL D V+ + ++ ++L + YIE
Sbjct: 109 FDNISTKWEPEIKHYIDTAK--TVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEA 166
Query: 125 SAKVRINVDQAFHELVRIVL 144
S+ +I +++ F + V +
Sbjct: 167 SSVAKIGLNEVFEKSVDCIF 186
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F Y PT+ ++Y +D L + DTAG E++ +R + L+ FS+
Sbjct: 33 FPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSP 92
Query: 67 NSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADL---DHQRQ---------VSSMDAQNV 113
+S E I K+ ++ P+++VGNK DL +H R+ V + +++
Sbjct: 93 DSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 150
Query: 114 ARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144
A ++ Y+ECSAK + V + F R L
Sbjct: 151 ANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 14/145 (9%)
Query: 12 DPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEE 71
+ T + Y K+ ++D + I +EE A ++ + + VFS+ D NSF+
Sbjct: 36 EKTESEQYKKEMLVDGQTHLVLI-----REEAGAPDAKFSGWADAVIFVFSLEDENSFQA 90
Query: 72 IYKFHRQI--LRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQL-----RIPYIEC 124
+ + H Q+ LR + R + +VG + + DA+ AR L R Y E
Sbjct: 91 VSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDAR--ARALXADMKRCSYYET 148
Query: 125 SAKVRINVDQAFHELVRIVLLHTKQ 149
A +NVD+ F E+ + V+ KQ
Sbjct: 149 XATYGLNVDRVFQEVAQKVVTLRKQ 173
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 14/145 (9%)
Query: 12 DPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEE 71
+ T + Y K+ ++D + I +EE A ++ + + VFS+ D NSF+
Sbjct: 36 EKTESEQYKKEMLVDGQTHLVLI-----REEAGAPDAKFSGWADAVIFVFSLEDENSFQA 90
Query: 72 IYKFHRQI--LRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQL-----RIPYIEC 124
+ + H Q+ LR + R + +VG + + DA+ AR L R Y E
Sbjct: 91 VSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDAR--ARALCADMKRCSYYET 148
Query: 125 SAKVRINVDQAFHELVRIVLLHTKQ 149
A +NVD+ F E+ + V+ KQ
Sbjct: 149 CATYGLNVDRVFQEVAQKVVTLRKQ 173
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 9/134 (6%)
Query: 19 YTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQ 78
+ K+ V+D L I D G E Q+ + + VFS+ D SF+ +Y + +
Sbjct: 56 FKKEIVVDGQSYLLLIRDEGGPPEL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLR 110
Query: 79 ILRVKDRDEFPMLMVGNKADLD--HQRQVSSMDAQNVARQL-RIPYIECSAKVRINVDQA 135
+ ++ E PM++VG + + + R + A+ ++ L R Y E A +NV++
Sbjct: 111 LCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERV 170
Query: 136 FHELV-RIVLLHTK 148
F ++ ++V L K
Sbjct: 171 FQDVAQKVVALRKK 184
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 22/137 (16%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ ++YT ID L + DT+G + +R + L+ F ++
Sbjct: 32 FPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP 91
Query: 67 NSFEEIYKFHRQILRVKDRDEF----PMLMVGNKADL-----------DHQRQVSSMD-A 110
+ + + K + ++ EF ML+VG K+DL +H++ S D
Sbjct: 92 ETLDSVLKKWKGEIQ-----EFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQG 146
Query: 111 QNVARQLRIP-YIECSA 126
N+A+Q+ YIECSA
Sbjct: 147 ANMAKQIGAATYIECSA 163
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 22/137 (16%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ ++YT ID L + DT+G + +R + L+ F ++
Sbjct: 48 FPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP 107
Query: 67 NSFEEIYKFHRQILRVKDRDEF----PMLMVGNKADL-----------DHQRQVSSMD-A 110
+ + + K + ++ EF ML+VG K+DL +H++ S D
Sbjct: 108 ETLDSVLKKWKGEIQ-----EFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQG 162
Query: 111 QNVARQLRIP-YIECSA 126
N+A+Q+ YIECSA
Sbjct: 163 ANMAKQIGAATYIECSA 179
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 22/137 (16%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ ++YT ID L + DT+G + +R + L+ F ++
Sbjct: 53 FPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP 112
Query: 67 NSFEEIYKFHRQILRVKDRDEF----PMLMVGNKADL-----------DHQRQVSSMD-A 110
+ + + K + ++ EF ML+VG K+DL +H++ S D
Sbjct: 113 ETLDSVLKKWKGEIQ-----EFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQG 167
Query: 111 QNVARQLRIP-YIECSA 126
N+A+Q+ YIECSA
Sbjct: 168 ANMAKQIGAATYIECSA 184
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 28 IPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDE 87
+ L +LDTAG + + QY +LVF V+ SFE + + + E
Sbjct: 71 VSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRE 130
Query: 88 FPM--LMVGNKADLDHQRQVSSMD-AQNVARQLRIPYIECSA 126
P+ ++V NK DL QR +D AQ+ A + + + SA
Sbjct: 131 RPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSA 172
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
Query: 32 LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPML 91
+ I D GQ F +M E+Y R + + DR E +L P+L
Sbjct: 69 IKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVL 128
Query: 92 MVGNKAD----LDHQRQVSSMDAQNVA-RQLRIPYIECSAKVRINV 132
++GNK D LD ++ + M+ + R++ I C K I++
Sbjct: 129 VLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDI 174
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 41/85 (48%)
Query: 34 ILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMV 93
+ D GQ+ + + Y ++ +G + V DR +E+ +++L V + + +L+
Sbjct: 65 VWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLF 124
Query: 94 GNKADLDHQRQVSSMDAQNVARQLR 118
NK DL + +S M + + LR
Sbjct: 125 ANKQDLPNAMAISEMTDKLGLQSLR 149
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
Query: 32 LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPML 91
+ + D GQ F +M E+Y R + + D+ E +L P+L
Sbjct: 78 IKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVL 137
Query: 92 MVGNKAD----LDHQRQVSSMDAQNVA-RQLRIPYIECSAKVRINV 132
++GNK D LD + + M+ + R++ I C K I++
Sbjct: 138 VLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI 183
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
Query: 32 LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPML 91
+ + D GQ F +M E+Y R + + D+ E +L P+L
Sbjct: 69 IKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVL 128
Query: 92 MVGNKAD----LDHQRQVSSMDAQNVA-RQLRIPYIECSAKVRINV 132
++GNK D LD + + M+ + R++ I C K I++
Sbjct: 129 VLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI 174
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 34.3 bits (77), Expect = 0.033, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 33/69 (47%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+ ++ D GQ++ + Y +G + V DR+ +E + +I+ ++ + +
Sbjct: 367 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 426
Query: 91 LMVGNKADL 99
L+ NK DL
Sbjct: 427 LIFANKQDL 435
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 33.5 bits (75), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 25/148 (16%)
Query: 11 YDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFE 70
Y PT+ ++YT ++ L + DT+G + +R + LL F ++ + +
Sbjct: 56 YVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVD 115
Query: 71 E-IYKFHRQILRVKDRDEFP---MLMVGNKAD----------LDHQRQ--VSSMDAQNVA 114
+ K+ +IL D P +L++G K D L HQ+Q +S +A
Sbjct: 116 SALKKWRTEIL-----DYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIA 170
Query: 115 RQLRIP-YIECSAKVRINVDQAFHELVR 141
+QL Y+E SA +++ H + R
Sbjct: 171 KQLGAEIYLEGSA---FTSEKSIHSIFR 195
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 33.5 bits (75), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 25/148 (16%)
Query: 11 YDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFE 70
Y PT+ ++YT ++ L + DT+G + +R + LL F ++ + +
Sbjct: 39 YVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVD 98
Query: 71 E-IYKFHRQILRVKDRDEFP---MLMVGNKAD----------LDHQRQ--VSSMDAQNVA 114
+ K+ +IL D P +L++G K D L HQ+Q +S +A
Sbjct: 99 SALKKWRTEIL-----DYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIA 153
Query: 115 RQLRIP-YIECSAKVRINVDQAFHELVR 141
+QL Y+E SA +++ H + R
Sbjct: 154 KQLGAEIYLEGSA---FTSEKSIHSIFR 178
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 25/148 (16%)
Query: 11 YDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFE 70
Y PT+ ++YT ++ L + DT+G + +R + LL F ++ + +
Sbjct: 40 YVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVD 99
Query: 71 E-IYKFHRQILRVKDRDEFP---MLMVGNKAD----------LDHQRQ--VSSMDAQNVA 114
+ K+ +IL D P +L++G K D L HQ+Q +S +A
Sbjct: 100 SALKKWRTEIL-----DYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIA 154
Query: 115 RQLRIP-YIECSAKVRINVDQAFHELVR 141
+QL Y+E SA +++ H + R
Sbjct: 155 KQLGAEIYLEGSA---FTSEKSIHSIFR 179
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 33.5 bits (75), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYK-FHRQILRVKDRDEFP 89
+ ++ D GQ++ + Y +G + V DR+ +E + HR I + RD
Sbjct: 45 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAI- 103
Query: 90 MLMVGNKADL 99
+L+ NK DL
Sbjct: 104 ILIFANKQDL 113
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 34 ILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMV 93
+ D GQ+ ++ Y R+ EG + V DR+ E + +++L + L+
Sbjct: 48 VWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVF 107
Query: 94 GNKADLDHQRQVSSMDAQNVARQLRIPYI 122
NK DL +M A + +L + I
Sbjct: 108 ANKQDLPE-----AMSAAEITEKLGLHSI 131
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 33/69 (47%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+ ++ D GQ++ + Y +G + V DR+ +E + +I+ ++ + +
Sbjct: 45 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 104
Query: 91 LMVGNKADL 99
L+ NK DL
Sbjct: 105 LIFANKQDL 113
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 33/69 (47%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+ ++ D GQ++ + Y +G + V DR+ +E + +I+ ++ + +
Sbjct: 45 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 104
Query: 91 LMVGNKADL 99
L+ NK DL
Sbjct: 105 LIFANKQDL 113
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 33/69 (47%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+ ++ D GQ++ + Y +G + V DR+ +E + +I+ ++ + +
Sbjct: 57 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 116
Query: 91 LMVGNKADL 99
L+ NK DL
Sbjct: 117 LIFANKQDL 125
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 33/69 (47%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+ ++ D GQ++ + Y +G + V DR+ +E + +I+ ++ + +
Sbjct: 58 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 117
Query: 91 LMVGNKADL 99
L+ NK DL
Sbjct: 118 LIFANKQDL 126
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 34 ILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMV 93
+ D GQ+ ++ Y R+ EG + V DR+ E + +++L + L+
Sbjct: 65 VWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVF 124
Query: 94 GNKADLDHQRQVSSMDAQNVARQLRIPYI 122
NK DL +M A + +L + I
Sbjct: 125 ANKQDLPE-----AMSAAEITEKLGLHSI 148
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 34 ILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMV 93
+ D GQ+ ++ Y R+ EG + V DR+ E + +++L + L+
Sbjct: 65 VWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVF 124
Query: 94 GNKADLDHQRQVSSMDAQNVARQLRIPYI 122
NK DL +M A + +L + I
Sbjct: 125 ANKQDLPE-----AMSAAEITEKLGLHSI 148
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 8 VTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRN 67
V PTI S ++ VI++ R + D GQE + Y + E ++V TDR
Sbjct: 41 VVHTSPTI-GSNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 97
Query: 68 SF----EEIYKFHRQILRVKDRDEFPMLMVGNKADL 99
EE+YK +L +D + +L+ NK D+
Sbjct: 98 RISVTREELYK----MLAHEDLRKAGLLIFANKQDV 129
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 8 VTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRN 67
V PTI S ++ VI++ R + D GQE + Y + E ++V TDR
Sbjct: 41 VVHTSPTI-GSNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 97
Query: 68 SF----EEIYKFHRQILRVKDRDEFPMLMVGNKADL 99
EE+YK +L +D + +L+ NK D+
Sbjct: 98 RISVTREELYK----MLAHEDLRKAGLLIFANKQDV 129
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+L++ D GQ + Y + + + V DR FEE + ++L + P+
Sbjct: 61 KLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPV 120
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
L+ NK DL +++ A +A L + I
Sbjct: 121 LIFANKQDL-----LTAAPASEIAEGLNLHTI 147
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 8 VTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRN 67
V PTI S ++ VI++ R + D GQE + Y + E ++V TDR
Sbjct: 47 VVHTSPTI-GSNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 103
Query: 68 SF----EEIYKFHRQILRVKDRDEFPMLMVGNKADL 99
EE+YK +L +D + +L+ NK D+
Sbjct: 104 RISVTREELYK----MLAHEDLRKAGLLIFANKQDV 135
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+L++ D GQ + Y + + + V DR FEE + ++L + P+
Sbjct: 49 KLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPV 108
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
L+ NK DL +++ A +A L + I
Sbjct: 109 LIFANKQDL-----LTAAPASEIAEGLNLHTI 135
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+L++ D GQ + Y + + + V DR FEE + ++L + P+
Sbjct: 62 KLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPV 121
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
L+ NK DL +++ A +A L + I
Sbjct: 122 LIFANKQDL-----LTAAPASEIAEGLNLHTI 148
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 8 VTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRN 67
V PTI S ++ VI++ R + D GQE + Y + E ++V TDR
Sbjct: 46 VVHTSPTI-GSNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 102
Query: 68 SF----EEIYKFHRQILRVKDRDEFPMLMVGNKADL 99
EE+YK +L +D + +L+ NK D+
Sbjct: 103 RISVTREELYK----MLAHEDLRKAGLLIFANKQDV 134
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 30.8 bits (68), Expect = 0.37, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
R++I+DT G +F+ E+ MR +G ++VF +S + + + R ++ + P
Sbjct: 45 RINIIDTPGHVDFTIEVERSMRVLDGAIVVF-----DSSQGVEPQSETVWRQAEKYKVPR 99
Query: 91 LMVGNKAD 98
+ NK D
Sbjct: 100 IAFANKMD 107
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 30.8 bits (68), Expect = 0.37, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
R++I+DT G +F+ E+ MR +G ++VF +S + + + R ++ + P
Sbjct: 78 RINIIDTPGHVDFTIEVERSMRVLDGAIVVF-----DSSQGVEPQSETVWRQAEKYKVPR 132
Query: 91 LMVGNKAD 98
+ NK D
Sbjct: 133 IAFANKMD 140
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 30.8 bits (68), Expect = 0.37, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
R++I+DT G +F+ E+ MR +G ++VF +S + + + R ++ + P
Sbjct: 78 RINIIDTPGHVDFTIEVERSMRVLDGAIVVF-----DSSQGVEPQSETVWRQAEKYKVPR 132
Query: 91 LMVGNKAD 98
+ NK D
Sbjct: 133 IAFANKMD 140
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 30.8 bits (68), Expect = 0.37, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
R++I+DT G +F+ E+ MR +G ++VF +S + + + R ++ + P
Sbjct: 78 RINIIDTPGHVDFTIEVERSMRVLDGAIVVF-----DSSQGVEPQSETVWRQAEKYKVPR 132
Query: 91 LMVGNKAD 98
+ NK D
Sbjct: 133 IAFANKMD 140
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 30.8 bits (68), Expect = 0.37, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
R++I+DT G +F+ E+ MR +G ++VF +S + + + R ++ + P
Sbjct: 78 RINIIDTPGHVDFTIEVERSMRVLDGAIVVF-----DSSQGVEPQSETVWRQAEKYKVPR 132
Query: 91 LMVGNKAD 98
+ NK D
Sbjct: 133 IAFANKMD 140
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 30.8 bits (68), Expect = 0.37, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
R++I+DT G +F+ E+ MR +G ++VF +S + + + R ++ + P
Sbjct: 78 RINIIDTPGHVDFTIEVERSMRVLDGAIVVF-----DSSQGVEPQSETVWRQAEKYKVPR 132
Query: 91 LMVGNKAD 98
+ NK D
Sbjct: 133 IAFANKMD 140
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 34 ILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMV 93
+ D GQ++ + Y ++ +G + V DR +E +++L+ + + +L+
Sbjct: 77 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVF 136
Query: 94 GNKADLDHQRQVSSMDAQNVARQL--RIPYIECSAKVRI-----NVDQAFHELVR 141
NK D+ + VS + + + L R Y++ + + +D HEL +
Sbjct: 137 ANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 191
>pdb|2EWF|A Chain A, Crystal Structure Of The Site-specific Dna Nickase
N.bspd6i
Length = 610
Score = 30.4 bits (67), Expect = 0.42, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 58 LLVFSVTDRNSFEEIYKFH-RQILRV--KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVA 114
L + ++N+FEE K++ Q R+ +F ML++ K ++ R++SS D +N+
Sbjct: 515 LFIAPEINKNTFEEFMKYNIVQNTRIIPLSLKQFNMLLMVQKKLIEKGRRLSSYDIKNLM 574
Query: 115 RQLRIPYIECSAK 127
L IEC K
Sbjct: 575 VSLYRTTIECERK 587
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 34 ILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFP---M 90
+ D GQ++ + Y ++ +G + V DR E + + +++R+ DE +
Sbjct: 213 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVL 269
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRI 119
L+ NK DL + +M+A + +L +
Sbjct: 270 LVFANKQDLPN-----AMNAAEITDKLGL 293
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+L+I D GQ+ + Y S +G + V DR ++ + Q L V++R
Sbjct: 63 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQR-ELQSLLVEERLAGAT 121
Query: 91 LMV-GNKADL 99
L++ NK DL
Sbjct: 122 LLIFANKQDL 131
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+L+I D GQ+ + Y S +G + V DR ++ + Q L V++R
Sbjct: 61 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQR-ELQSLLVEERLAGAT 119
Query: 91 LMV-GNKADL 99
L++ NK DL
Sbjct: 120 LLIFANKQDL 129
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 34 ILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEF---PM 90
+ D GQ++ + Y ++ +G + V DR E + + +++R+ DE +
Sbjct: 48 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVL 104
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRI 119
L+ NK DL + +M+A + +L +
Sbjct: 105 LVFANKQDLPN-----AMNAAEITDKLGL 128
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+L+I D GQ+ + Y S +G + V DR ++ + Q L V++R
Sbjct: 63 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRXQDCQR-ELQSLLVEERLAGAT 121
Query: 91 LMV-GNKADL 99
L++ NK DL
Sbjct: 122 LLIFANKQDL 131
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+L+I D GQ+ + Y S +G + V DR ++ + Q L V++R
Sbjct: 63 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQR-ELQSLLVEERLAGAT 121
Query: 91 LMV-GNKADL 99
L++ NK DL
Sbjct: 122 LLIFANKQDL 131
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 34 ILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEF---PM 90
+ D GQ++ + Y ++ +G + V DR E + + +++R+ DE +
Sbjct: 64 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVL 120
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRI 119
L+ NK DL + +M+A + +L +
Sbjct: 121 LVFANKQDLPN-----AMNAAEITDKLGL 144
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 29.6 bits (65), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 34 ILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEF---PM 90
+ D GQ++ + Y ++ +G + V DR E + + +++R+ DE +
Sbjct: 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVL 121
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRI 119
L+ NK DL + +M+A + +L +
Sbjct: 122 LVFANKQDLPN-----AMNAAEITDKLGL 145
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 29.6 bits (65), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 8/110 (7%)
Query: 13 PTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEI 72
PTI + +CV + D GQ+ ++ Y + EG + V DR+ E
Sbjct: 47 PTI--GFNVECV-QYCNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEA 103
Query: 73 YKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ +++L + L+ NK DL +M A + +L + I
Sbjct: 104 REVMQRMLNEDELCNAAWLVFANKQDLPE-----AMSAAEITEKLGLHSI 148
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/69 (20%), Positives = 32/69 (46%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+ ++ D G ++ + Y +G + V DR+ +E + +I+ ++ + +
Sbjct: 48 KFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 107
Query: 91 LMVGNKADL 99
L+ NK DL
Sbjct: 108 LIFANKQDL 116
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/69 (20%), Positives = 32/69 (46%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+ ++ D G ++ + Y +G + V DR+ +E + +I+ ++ + +
Sbjct: 47 KFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 106
Query: 91 LMVGNKADL 99
L+ NK DL
Sbjct: 107 LIFANKQDL 115
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/69 (20%), Positives = 32/69 (46%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+ ++ D G ++ + Y +G + V DR+ +E + +I+ ++ + +
Sbjct: 58 KFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 117
Query: 91 LMVGNKADL 99
L+ NK DL
Sbjct: 118 LIFANKQDL 126
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 28.9 bits (63), Expect = 1.3, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
R++I+D G +F+ E+ MR +G ++VF +S + + + R ++ + P
Sbjct: 78 RINIIDAPGHVDFTIEVERSMRVLDGAIVVF-----DSSQGVEPQSETVWRQAEKYKVPR 132
Query: 91 LMVGNKAD 98
+ NK D
Sbjct: 133 IAFANKMD 140
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 34 ILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYK-FHRQILRVKDRDEFPMLM 92
+ D GQ++ + Y + +G + V DR ++ + HR I + +D +L+
Sbjct: 65 VWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAI-ILV 123
Query: 93 VGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
NK DL + +M A V +L + I
Sbjct: 124 FANKQDLPN-----AMSAAEVTEKLHLNTI 148
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 22/109 (20%)
Query: 34 ILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMV 93
+ D +GQ + + E Y + G+ + V +DR + V ++E L+
Sbjct: 71 VFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDR------------LRMVVAKEELDTLL- 117
Query: 94 GNKADLDHQRQ-----VSSMDAQNVARQLRIPYIECSAKVRINVDQAFH 137
N D+ H+R + MD ++ +++ + C ++ D+ +H
Sbjct: 118 -NHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIK---DKPWH 162
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
R++I+D G +F+ E+ MR +G ++VF +S + + + R ++ + P
Sbjct: 78 RINIIDAPGHVDFTIEVERSMRVLDGAIVVF-----DSSQGVEPQSETVWRQAEKYKVPR 132
Query: 91 LMVGNKAD 98
+ NK D
Sbjct: 133 IAFANKMD 140
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
R++I+D G +F+ E+ MR +G ++VF +S + + + R ++ + P
Sbjct: 78 RINIIDAPGHVDFTIEVERSMRVLDGAIVVF-----DSSQGVEPQSETVWRQAEKYKVPR 132
Query: 91 LMVGNKAD 98
+ NK D
Sbjct: 133 IAFANKMD 140
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 34 ILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY-KFHRQILRVKDRDEFPMLM 92
+ D GQ++ + Y ++ +G + V DR+ E + HR + + RD +L+
Sbjct: 68 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLV 126
Query: 93 VGNKADLDHQRQVSSMDAQNVARQLRI 119
NK DL ++M+A + +L +
Sbjct: 127 FANKQDLP-----NAMNAAEITDKLGL 148
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 24/121 (19%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSV---TDRNSFEEIYKFHRQILRVKDRDE 87
+L+ +DT G +FS + + + EG LLV + + Y L V
Sbjct: 72 QLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEV----- 126
Query: 88 FPMLMVGNKADLDHQRQVSSMDAQNVARQLR-------IPYIECSAKVRINVDQAFHELV 140
P+L NK DL + D + VA ++ + CSAK + V LV
Sbjct: 127 VPVL---NKIDL------PAADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLV 177
Query: 141 R 141
R
Sbjct: 178 R 178
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 24/121 (19%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSV---TDRNSFEEIYKFHRQILRVKDRDE 87
+L+ +DT G +FS + + + EG LLV + + Y L V
Sbjct: 72 QLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEV----- 126
Query: 88 FPMLMVGNKADLDHQRQVSSMDAQNVARQLR-------IPYIECSAKVRINVDQAFHELV 140
P+L NK DL + D + VA ++ + CSAK + V LV
Sbjct: 127 VPVL---NKIDL------PAADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLV 177
Query: 141 R 141
R
Sbjct: 178 R 178
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+L++ D G + Y + + + V DR FEE + ++L + P+
Sbjct: 49 KLNVWDIGGLRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPV 108
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
L+ NK DL +++ A +A L + I
Sbjct: 109 LIFANKQDL-----LTAAPASEIAEGLNLHTI 135
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 32 LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDR-DEFPM 90
L++ D AG+EEF + + +L V+ ++ + E+ + +K R P+
Sbjct: 56 LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQA--EVDAXKPWLFNIKARASSSPV 113
Query: 91 LMVGNKADLDHQRQ 104
++VG D+ ++Q
Sbjct: 114 ILVGTHLDVSDEKQ 127
>pdb|3MCS|A Chain A, Crystal Structure Of Putative Monooxygenase (Fn1347) From
Fusobacterium Nucleatum Subsp. Nucleatum Atcc 25586 At
2.55 A Resolution
pdb|3MCS|B Chain B, Crystal Structure Of Putative Monooxygenase (Fn1347) From
Fusobacterium Nucleatum Subsp. Nucleatum Atcc 25586 At
2.55 A Resolution
Length = 219
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 24/73 (32%)
Query: 55 EGFLLVFSVTDRNSFE-----EIYK-------------FHRQILRVKD------RDEFPM 90
EG LLV+ TDR +F E+YK F I + KD R E +
Sbjct: 145 EGTLLVYLGTDRRNFNKWCLFEVYKDIDSYLNHRSAKYFKDYITQTKDXIAGKKRAELQV 204
Query: 91 LMVGNKADLDHQR 103
L + NK LD+++
Sbjct: 205 LKIENKGGLDYKK 217
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 8 VTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRN 67
V D+ I D + V L++ D AG+EEF + + +L V+ ++
Sbjct: 41 VKDWPIQIRDKRKRDLV-------LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQ 93
Query: 68 SFEEIYKFHRQILRVKDR-DEFPMLMVGNKADLDHQRQ 104
+ E+ + +K R P+++VG D+ ++Q
Sbjct: 94 A--EVDAXKPWLFNIKARASSSPVILVGTHLDVSDEKQ 129
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/109 (18%), Positives = 44/109 (40%), Gaps = 6/109 (5%)
Query: 34 ILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFP---M 90
+ D GQ++ + Y ++ + + V DR+ E +++++ + DE +
Sbjct: 65 VWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEA---REELMKMLNEDEMRNAIL 121
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHEL 139
L+ NK DL +S + + + ++ C N D + L
Sbjct: 122 LVFANKHDLPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGLYEGL 170
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 34 ILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEF---PM 90
+ D G ++ + Y ++ +G + V DR E + + +++R+ DE +
Sbjct: 50 VWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVL 106
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRI 119
L+ NK DL + +M+A + +L +
Sbjct: 107 LVFANKQDLPN-----AMNAAEITDKLGL 130
>pdb|3ZRJ|A Chain A, Complex Of Clpv N-Domain With Vipb Peptide
pdb|3ZRJ|B Chain B, Complex Of Clpv N-Domain With Vipb Peptide
Length = 171
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 14 TIEDSYTKQCVIDDIPARLDILDTAGQEEF----SAMREQYMRSGEGFLLVFSVTDRN-S 68
I +Y+++ V+D PA +L QE + + + + +RSG FL + DR S
Sbjct: 82 AIASTYSREQVLDTYPAFSPLLVELLQEAWLLSSTELEQAELRSGAIFLAALTRADRYLS 141
Query: 69 FEEIYKFHRQILRVKDRDEFPMLM 92
F+ I F I R + F M++
Sbjct: 142 FKLISLFE-GINRENLKKHFAMIL 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,309,135
Number of Sequences: 62578
Number of extensions: 156322
Number of successful extensions: 1057
Number of sequences better than 100.0: 360
Number of HSP's better than 100.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 465
Number of HSP's gapped (non-prelim): 361
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.7 bits)