Query psy11289
Match_columns 159
No_of_seqs 113 out of 1436
Neff 10.1
Searched_HMMs 46136
Date Fri Aug 16 23:00:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11289.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11289hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 3.4E-38 7.5E-43 210.9 16.3 148 2-150 29-178 (205)
2 KOG0078|consensus 100.0 2.3E-36 4.9E-41 204.7 17.1 149 2-151 32-181 (207)
3 KOG0092|consensus 100.0 1.4E-36 3.1E-41 202.4 14.3 149 2-151 25-174 (200)
4 KOG0094|consensus 100.0 3.7E-36 7.9E-41 200.8 14.0 146 2-147 42-188 (221)
5 KOG0098|consensus 100.0 1.6E-35 3.5E-40 196.4 14.2 146 2-148 26-172 (216)
6 cd04121 Rab40 Rab40 subfamily. 100.0 6.9E-34 1.5E-38 196.0 19.5 148 3-152 27-175 (189)
7 cd04120 Rab12 Rab12 subfamily. 100.0 1.4E-33 3.1E-38 196.2 19.3 145 2-147 20-166 (202)
8 KOG0079|consensus 100.0 5.4E-34 1.2E-38 182.7 12.8 143 3-147 29-172 (198)
9 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 3.3E-33 7.1E-38 191.7 17.4 141 2-144 25-180 (182)
10 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 6.1E-33 1.3E-37 196.2 19.2 146 2-149 33-193 (232)
11 cd04133 Rop_like Rop subfamily 100.0 2.6E-33 5.5E-38 191.2 16.6 141 2-144 21-173 (176)
12 cd01875 RhoG RhoG subfamily. 100.0 5.6E-33 1.2E-37 192.1 18.6 145 2-148 23-181 (191)
13 KOG0080|consensus 100.0 9.6E-34 2.1E-38 183.8 11.8 146 2-147 31-177 (209)
14 PTZ00099 rab6; Provisional 100.0 2.1E-32 4.5E-37 186.7 18.8 143 4-147 2-145 (176)
15 KOG0091|consensus 100.0 1.4E-33 3E-38 183.6 12.0 148 2-149 28-178 (213)
16 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2.3E-32 5.1E-37 186.1 18.4 148 2-149 22-169 (172)
17 KOG0087|consensus 100.0 2.4E-33 5.2E-38 189.5 13.2 147 2-149 34-181 (222)
18 KOG0093|consensus 100.0 4.4E-33 9.5E-38 178.3 13.3 146 2-148 41-187 (193)
19 cd04131 Rnd Rnd subfamily. Th 100.0 1.4E-32 3E-37 188.1 16.7 141 2-144 21-176 (178)
20 KOG0394|consensus 100.0 3.6E-33 7.7E-38 184.9 12.2 147 2-148 29-182 (210)
21 KOG0081|consensus 100.0 1.4E-32 3.1E-37 178.2 13.1 149 2-150 29-187 (219)
22 KOG0083|consensus 100.0 1.2E-32 2.7E-37 173.9 10.8 144 3-147 18-163 (192)
23 KOG0086|consensus 100.0 5.9E-32 1.3E-36 174.4 13.2 146 2-148 29-175 (214)
24 cd01874 Cdc42 Cdc42 subfamily. 100.0 2.8E-31 6E-36 181.3 16.7 140 2-143 21-174 (175)
25 PTZ00369 Ras-like protein; Pro 100.0 6.1E-31 1.3E-35 181.6 18.6 148 3-150 26-173 (189)
26 cd04144 Ras2 Ras2 subfamily. 100.0 8.2E-31 1.8E-35 181.1 19.2 148 3-150 20-169 (190)
27 cd04122 Rab14 Rab14 subfamily. 100.0 8.8E-31 1.9E-35 177.2 18.6 142 3-145 23-165 (166)
28 cd04175 Rap1 Rap1 subgroup. T 100.0 1.8E-30 3.8E-35 175.3 18.1 142 3-144 22-163 (164)
29 cd04136 Rap_like Rap-like subf 100.0 1.5E-30 3.2E-35 175.2 17.7 141 3-143 22-162 (163)
30 KOG0088|consensus 100.0 1.4E-32 3E-37 178.2 7.1 145 2-147 33-178 (218)
31 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2.4E-30 5.1E-35 182.1 18.8 145 2-148 21-180 (222)
32 smart00176 RAN Ran (Ras-relate 100.0 2.6E-30 5.6E-35 179.6 18.3 141 2-146 15-156 (200)
33 KOG0095|consensus 100.0 2.7E-31 5.9E-36 170.7 12.2 145 2-147 27-172 (213)
34 cd04127 Rab27A Rab27a subfamil 100.0 7.4E-30 1.6E-34 174.7 18.1 144 3-146 25-179 (180)
35 cd04176 Rap2 Rap2 subgroup. T 100.0 6.8E-30 1.5E-34 172.2 17.6 142 2-143 21-162 (163)
36 cd04134 Rho3 Rho3 subfamily. 100.0 4.6E-30 9.9E-35 177.3 17.0 152 2-155 20-185 (189)
37 PF00071 Ras: Ras family; Int 100.0 1.1E-29 2.4E-34 171.0 18.4 142 2-144 19-161 (162)
38 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 8E-30 1.7E-34 177.6 18.1 146 2-147 20-171 (201)
39 cd04117 Rab15 Rab15 subfamily. 100.0 1E-29 2.2E-34 171.3 18.1 139 3-142 21-160 (161)
40 KOG0395|consensus 100.0 1.2E-29 2.7E-34 175.2 18.5 146 2-147 23-168 (196)
41 cd01873 RhoBTB RhoBTB subfamil 100.0 3.8E-30 8.2E-35 178.3 15.9 135 4-142 30-194 (195)
42 cd01871 Rac1_like Rac1-like su 100.0 5.3E-30 1.2E-34 174.8 16.4 139 2-142 21-173 (174)
43 KOG0097|consensus 100.0 2.2E-30 4.7E-35 165.4 12.9 146 2-148 31-177 (215)
44 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.5E-29 3.3E-34 173.7 17.5 144 2-147 20-169 (182)
45 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 2.9E-29 6.3E-34 170.6 18.3 144 2-145 20-166 (170)
46 cd01867 Rab8_Rab10_Rab13_like 100.0 3.8E-29 8.2E-34 169.4 18.6 142 3-145 24-166 (167)
47 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 6.2E-29 1.3E-33 168.1 18.5 141 3-144 23-164 (166)
48 cd04111 Rab39 Rab39 subfamily. 100.0 5.1E-29 1.1E-33 174.7 18.5 148 3-150 23-172 (211)
49 cd01865 Rab3 Rab3 subfamily. 100.0 6.6E-29 1.4E-33 167.9 18.5 141 3-144 22-163 (165)
50 smart00173 RAS Ras subfamily o 100.0 7.5E-29 1.6E-33 167.2 18.4 142 3-144 21-162 (164)
51 cd04109 Rab28 Rab28 subfamily. 100.0 7E-29 1.5E-33 174.6 18.9 144 3-146 21-168 (215)
52 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.1E-28 2.4E-33 166.2 18.6 141 3-143 23-163 (164)
53 cd04119 RJL RJL (RabJ-Like) su 100.0 9.2E-29 2E-33 166.9 18.1 143 3-145 21-168 (168)
54 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.4E-28 3.1E-33 165.1 18.5 140 3-143 22-161 (162)
55 cd04125 RabA_like RabA-like su 100.0 1.7E-28 3.7E-33 169.2 19.0 148 3-151 21-169 (188)
56 cd04110 Rab35 Rab35 subfamily. 100.0 1.6E-28 3.5E-33 170.8 19.0 144 3-148 27-171 (199)
57 smart00174 RHO Rho (Ras homolo 100.0 6E-29 1.3E-33 169.2 16.5 142 2-145 18-173 (174)
58 KOG0393|consensus 100.0 1E-29 2.2E-34 172.8 12.5 146 1-148 23-183 (198)
59 cd04132 Rho4_like Rho4-like su 100.0 1.3E-28 2.9E-33 169.5 17.7 145 3-149 21-172 (187)
60 PLN03071 GTP-binding nuclear p 100.0 1.3E-28 2.8E-33 173.6 17.2 141 2-146 33-174 (219)
61 cd04140 ARHI_like ARHI subfami 100.0 2.8E-28 6.2E-33 164.8 18.1 140 3-142 22-163 (165)
62 cd04177 RSR1 RSR1 subgroup. R 100.0 6.1E-28 1.3E-32 163.6 18.3 142 3-144 22-164 (168)
63 PLN03110 Rab GTPase; Provision 100.0 6.1E-28 1.3E-32 169.8 18.7 144 3-147 33-177 (216)
64 cd04112 Rab26 Rab26 subfamily. 100.0 8.8E-28 1.9E-32 166.1 19.1 144 3-147 21-166 (191)
65 cd04146 RERG_RasL11_like RERG/ 100.0 4.2E-28 9.1E-33 163.9 16.9 142 3-144 20-164 (165)
66 cd04106 Rab23_lke Rab23-like s 100.0 4.5E-28 9.8E-33 163.0 16.9 138 3-142 21-161 (162)
67 cd04103 Centaurin_gamma Centau 100.0 4.6E-28 1E-32 162.8 16.4 135 2-142 20-157 (158)
68 cd04130 Wrch_1 Wrch-1 subfamil 100.0 3.5E-28 7.5E-33 165.6 15.5 137 3-141 21-171 (173)
69 cd04143 Rhes_like Rhes_like su 100.0 1.1E-27 2.4E-32 171.3 18.4 146 2-147 20-174 (247)
70 cd01866 Rab2 Rab2 subfamily. 100.0 2E-27 4.4E-32 161.1 18.8 142 3-145 25-167 (168)
71 cd04116 Rab9 Rab9 subfamily. 100.0 1.2E-27 2.6E-32 162.3 17.3 139 3-142 26-169 (170)
72 cd01868 Rab11_like Rab11-like. 100.0 2.3E-27 4.9E-32 160.2 18.2 140 3-143 24-164 (165)
73 PLN03108 Rab family protein; P 100.0 3.4E-27 7.4E-32 165.4 19.3 144 3-147 27-171 (210)
74 cd04126 Rab20 Rab20 subfamily. 100.0 2.5E-27 5.3E-32 166.7 18.1 138 3-146 21-192 (220)
75 cd01864 Rab19 Rab19 subfamily. 100.0 2.5E-27 5.5E-32 160.1 17.5 139 3-142 24-164 (165)
76 cd04115 Rab33B_Rab33A Rab33B/R 100.0 3.9E-27 8.5E-32 160.0 17.6 141 3-143 23-168 (170)
77 cd00877 Ran Ran (Ras-related n 100.0 3.6E-27 7.8E-32 159.7 16.8 139 3-145 21-160 (166)
78 cd04113 Rab4 Rab4 subfamily. 100.0 5.2E-27 1.1E-31 157.8 17.3 139 3-142 21-160 (161)
79 cd04118 Rab24 Rab24 subfamily. 100.0 9.3E-27 2E-31 161.1 18.5 143 3-147 21-169 (193)
80 cd04124 RabL2 RabL2 subfamily. 100.0 8.3E-27 1.8E-31 157.1 17.6 139 3-146 21-160 (161)
81 cd04142 RRP22 RRP22 subfamily. 100.0 8.2E-27 1.8E-31 162.0 17.5 147 3-149 21-179 (198)
82 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.3E-26 2.8E-31 156.3 17.7 136 6-143 26-163 (164)
83 cd04135 Tc10 TC10 subfamily. 100.0 9.2E-27 2E-31 158.5 15.7 140 2-143 20-173 (174)
84 cd01860 Rab5_related Rab5-rela 100.0 4.2E-26 9E-31 153.6 18.2 140 3-143 22-162 (163)
85 smart00175 RAB Rab subfamily o 100.0 4.9E-26 1.1E-30 153.2 18.4 141 4-145 22-163 (164)
86 cd04148 RGK RGK subfamily. Th 100.0 4.2E-26 9E-31 161.0 18.8 143 3-147 21-166 (221)
87 cd04139 RalA_RalB RalA/RalB su 99.9 8E-26 1.7E-30 152.1 18.7 143 3-145 21-163 (164)
88 cd01892 Miro2 Miro2 subfamily. 99.9 1.2E-26 2.7E-31 157.5 14.6 141 2-145 24-167 (169)
89 cd01861 Rab6 Rab6 subfamily. 99.9 5.8E-26 1.3E-30 152.6 17.6 139 3-142 21-160 (161)
90 PLN03118 Rab family protein; P 99.9 9.2E-26 2E-30 158.3 19.0 139 9-147 40-180 (211)
91 cd01863 Rab18 Rab18 subfamily. 99.9 1.2E-25 2.7E-30 151.0 17.6 139 3-142 21-160 (161)
92 cd01870 RhoA_like RhoA-like su 99.9 1.1E-25 2.4E-30 153.3 16.4 140 2-143 21-174 (175)
93 cd01862 Rab7 Rab7 subfamily. 99.9 3.2E-25 6.9E-30 150.4 18.7 145 3-147 21-170 (172)
94 cd04123 Rab21 Rab21 subfamily. 99.9 3.1E-25 6.8E-30 148.8 18.2 139 4-143 22-161 (162)
95 cd04147 Ras_dva Ras-dva subfam 99.9 2.3E-25 4.9E-30 154.9 17.7 145 3-147 20-166 (198)
96 cd04137 RheB Rheb (Ras Homolog 99.9 6.7E-25 1.4E-29 150.1 19.1 148 4-151 23-170 (180)
97 cd00876 Ras Ras family. The R 99.9 6.5E-25 1.4E-29 147.0 17.7 139 4-142 21-159 (160)
98 PLN00223 ADP-ribosylation fact 99.9 2.2E-25 4.8E-30 152.9 14.9 134 4-146 39-180 (181)
99 cd04129 Rho2 Rho2 subfamily. 99.9 5.9E-25 1.3E-29 151.5 16.4 144 4-149 23-178 (187)
100 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 8.2E-26 1.8E-30 152.8 10.7 134 3-141 20-163 (164)
101 cd04114 Rab30 Rab30 subfamily. 99.9 3.3E-24 7.1E-29 145.2 18.1 139 4-143 29-168 (169)
102 cd04149 Arf6 Arf6 subfamily. 99.9 5E-25 1.1E-29 149.5 13.3 132 4-141 31-167 (168)
103 cd04158 ARD1 ARD1 subfamily. 99.9 1.1E-24 2.3E-29 147.9 14.7 137 4-146 21-163 (169)
104 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 2.4E-24 5.3E-29 148.0 15.7 148 4-154 25-180 (183)
105 cd04150 Arf1_5_like Arf1-Arf5- 99.9 2.7E-25 5.8E-30 149.5 10.0 132 4-141 22-158 (159)
106 smart00177 ARF ARF-like small 99.9 5.4E-25 1.2E-29 150.2 10.8 134 4-143 35-173 (175)
107 cd04102 RabL3 RabL3 (Rab-like3 99.9 4.1E-24 8.8E-29 148.6 15.4 129 2-130 20-176 (202)
108 PTZ00133 ADP-ribosylation fact 99.9 7.1E-24 1.5E-28 145.6 14.9 137 4-146 39-180 (182)
109 cd00157 Rho Rho (Ras homology) 99.9 1.6E-23 3.4E-28 142.0 15.1 137 3-141 21-170 (171)
110 cd00154 Rab Rab family. Rab G 99.9 4.7E-23 1E-27 137.3 17.0 136 4-140 22-158 (159)
111 KOG4252|consensus 99.9 8E-26 1.7E-30 149.6 2.2 146 2-149 40-186 (246)
112 PTZ00132 GTP-binding nuclear p 99.9 1.7E-22 3.7E-27 142.1 18.3 140 3-146 30-170 (215)
113 cd01893 Miro1 Miro1 subfamily. 99.9 8.1E-23 1.8E-27 138.3 16.0 140 3-145 21-165 (166)
114 cd04154 Arl2 Arl2 subfamily. 99.9 5.2E-23 1.1E-27 140.0 14.8 130 7-141 38-172 (173)
115 cd04161 Arl2l1_Arl13_like Arl2 99.9 5.6E-23 1.2E-27 139.3 12.7 132 5-141 21-166 (167)
116 cd04157 Arl6 Arl6 subfamily. 99.9 3.1E-22 6.8E-27 134.4 13.0 131 7-142 25-162 (162)
117 cd04151 Arl1 Arl1 subfamily. 99.9 1.4E-22 2.9E-27 136.0 10.7 131 5-141 22-157 (158)
118 PLN00023 GTP-binding protein; 99.9 5.7E-22 1.2E-26 144.8 14.6 118 2-119 41-189 (334)
119 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 1.5E-21 3.3E-26 133.0 15.3 132 4-141 37-173 (174)
120 cd04160 Arfrp1 Arfrp1 subfamil 99.9 1.4E-21 3E-26 132.0 14.5 130 7-141 30-166 (167)
121 cd04156 ARLTS1 ARLTS1 subfamil 99.9 7.2E-22 1.6E-26 132.6 12.4 133 4-141 21-159 (160)
122 KOG0070|consensus 99.9 1.5E-21 3.2E-26 130.2 13.5 130 12-146 46-180 (181)
123 cd00879 Sar1 Sar1 subfamily. 99.9 5.3E-21 1.2E-25 131.9 14.7 129 9-142 45-189 (190)
124 PF00025 Arf: ADP-ribosylation 99.9 5.7E-21 1.2E-25 130.4 13.6 129 10-143 41-175 (175)
125 KOG0075|consensus 99.9 5.7E-21 1.2E-25 122.8 12.4 133 4-144 42-182 (186)
126 KOG0073|consensus 99.9 6.6E-20 1.4E-24 119.8 15.3 135 7-146 40-180 (185)
127 KOG3883|consensus 99.9 2.9E-20 6.2E-25 120.3 12.9 153 2-154 31-185 (198)
128 cd00878 Arf_Arl Arf (ADP-ribos 99.9 2.5E-20 5.4E-25 124.9 12.7 129 8-141 24-157 (158)
129 cd01890 LepA LepA subfamily. 99.9 9.2E-20 2E-24 124.5 15.4 111 26-143 63-176 (179)
130 smart00178 SAR Sar1p-like memb 99.8 6.6E-20 1.4E-24 126.1 14.7 128 10-142 44-183 (184)
131 cd04159 Arl10_like Arl10-like 99.8 3.5E-20 7.5E-25 123.5 12.9 133 4-141 21-158 (159)
132 KOG0071|consensus 99.8 3.3E-19 7.2E-24 113.8 11.8 131 8-143 42-177 (180)
133 cd04155 Arl3 Arl3 subfamily. 99.8 1.6E-18 3.4E-23 117.8 14.0 125 9-141 40-172 (173)
134 KOG1673|consensus 99.8 2.8E-19 6E-24 116.1 8.9 142 2-146 40-188 (205)
135 COG1100 GTPase SAR1 and relate 99.8 6.1E-18 1.3E-22 119.0 16.0 144 3-147 26-188 (219)
136 PRK12299 obgE GTPase CgtA; Rev 99.8 6.2E-18 1.3E-22 125.7 16.2 137 8-146 185-330 (335)
137 cd00882 Ras_like_GTPase Ras-li 99.8 3.9E-17 8.4E-22 107.3 16.3 133 8-140 23-156 (157)
138 cd01897 NOG NOG1 is a nucleola 99.8 1.2E-17 2.5E-22 112.9 13.5 111 29-143 46-167 (168)
139 cd01898 Obg Obg subfamily. Th 99.8 1E-17 2.2E-22 113.3 13.0 112 30-142 48-169 (170)
140 KOG4423|consensus 99.8 9.1E-21 2E-25 126.3 -2.3 147 2-148 45-198 (229)
141 KOG0076|consensus 99.8 2.5E-18 5.4E-23 113.5 9.1 131 11-146 53-189 (197)
142 KOG0072|consensus 99.8 2.7E-18 5.7E-23 110.2 8.6 133 9-146 44-181 (182)
143 cd04171 SelB SelB subfamily. 99.8 2.6E-17 5.7E-22 110.5 13.7 112 22-141 44-163 (164)
144 TIGR00231 small_GTP small GTP- 99.8 7.5E-17 1.6E-21 107.0 15.4 133 5-139 24-159 (161)
145 cd01879 FeoB Ferrous iron tran 99.8 4.9E-17 1.1E-21 108.6 14.3 123 11-143 26-156 (158)
146 KOG0096|consensus 99.8 1.7E-18 3.7E-23 115.8 5.7 139 3-145 31-170 (216)
147 cd01891 TypA_BipA TypA (tyrosi 99.8 2.7E-17 5.8E-22 114.0 11.9 128 14-146 48-190 (194)
148 PRK03003 GTP-binding protein D 99.7 2.6E-17 5.6E-22 127.9 12.3 140 7-153 238-391 (472)
149 TIGR01393 lepA GTP-binding pro 99.7 1.3E-16 2.8E-21 126.5 16.1 115 26-147 66-183 (595)
150 TIGR00450 mnmE_trmE_thdF tRNA 99.7 1.8E-16 3.8E-21 121.9 15.0 128 5-147 228-363 (442)
151 TIGR02729 Obg_CgtA Obg family 99.7 2.9E-16 6.2E-21 116.6 15.5 132 9-143 185-328 (329)
152 cd01881 Obg_like The Obg-like 99.7 9.7E-17 2.1E-21 109.0 12.0 133 8-142 23-175 (176)
153 TIGR02528 EutP ethanolamine ut 99.7 4E-17 8.7E-22 107.5 9.3 98 33-140 38-141 (142)
154 cd01894 EngA1 EngA1 subfamily. 99.7 7.5E-16 1.6E-20 102.6 13.6 124 7-142 24-156 (157)
155 TIGR03594 GTPase_EngA ribosome 99.7 4.1E-16 8.9E-21 120.0 13.7 133 7-147 199-347 (429)
156 cd01878 HflX HflX subfamily. 99.7 4.7E-16 1E-20 108.5 12.7 114 21-142 81-203 (204)
157 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 1.7E-15 3.6E-20 102.2 13.6 110 29-143 49-165 (168)
158 PRK05291 trmE tRNA modificatio 99.7 8.5E-16 1.8E-20 118.6 13.2 122 7-145 242-371 (449)
159 PRK04213 GTP-binding protein; 99.7 1.8E-16 3.9E-21 110.3 8.5 108 31-144 53-192 (201)
160 TIGR03156 GTP_HflX GTP-binding 99.7 3.3E-15 7.1E-20 111.9 15.3 126 7-142 215-350 (351)
161 TIGR00437 feoB ferrous iron tr 99.7 1.5E-15 3.2E-20 120.5 13.9 126 8-143 21-154 (591)
162 PRK12297 obgE GTPase CgtA; Rev 99.7 1.5E-14 3.3E-19 110.3 17.0 131 10-146 187-329 (424)
163 PRK05433 GTP-binding protein L 99.7 4.4E-15 9.4E-20 118.0 14.6 115 26-147 70-187 (600)
164 TIGR00436 era GTP-binding prot 99.7 7.3E-15 1.6E-19 106.7 14.4 128 8-144 28-164 (270)
165 TIGR00157 ribosome small subun 99.7 1.6E-15 3.5E-20 108.5 10.8 95 41-140 24-119 (245)
166 PRK15467 ethanolamine utilizat 99.7 2.1E-15 4.5E-20 101.3 10.5 103 34-146 41-149 (158)
167 cd01888 eIF2_gamma eIF2-gamma 99.6 2.1E-15 4.6E-20 105.2 10.4 108 30-144 83-199 (203)
168 PRK03003 GTP-binding protein D 99.6 7.2E-15 1.6E-19 114.3 14.0 124 10-145 68-200 (472)
169 cd04164 trmE TrmE (MnmE, ThdF, 99.6 1.4E-14 3E-19 96.4 13.5 120 8-143 29-156 (157)
170 TIGR00487 IF-2 translation ini 99.6 1.6E-14 3.4E-19 114.4 15.3 110 21-142 127-248 (587)
171 COG2229 Predicted GTPase [Gene 99.6 1.9E-14 4E-19 96.3 13.0 105 32-142 70-176 (187)
172 PRK12296 obgE GTPase CgtA; Rev 99.6 2.8E-14 6E-19 110.4 15.6 136 9-147 187-343 (500)
173 TIGR00475 selB selenocysteine- 99.6 1.6E-14 3.5E-19 114.5 14.7 131 6-146 27-168 (581)
174 PRK15494 era GTPase Era; Provi 99.6 2E-14 4.4E-19 107.4 14.5 121 14-145 86-217 (339)
175 PF02421 FeoB_N: Ferrous iron 99.6 1E-14 2.2E-19 97.0 11.0 124 6-139 25-156 (156)
176 cd04105 SR_beta Signal recogni 99.6 2.7E-14 5.9E-19 99.6 13.5 98 4-101 22-123 (203)
177 PRK11058 GTPase HflX; Provisio 99.6 4.9E-14 1.1E-18 107.9 16.0 130 8-145 224-363 (426)
178 cd01889 SelB_euk SelB subfamil 99.6 1.7E-14 3.7E-19 99.8 12.0 116 27-147 65-189 (192)
179 PRK09518 bifunctional cytidyla 99.6 2.8E-14 6.1E-19 115.8 14.3 137 7-152 477-629 (712)
180 CHL00189 infB translation init 99.6 4.6E-14 9.9E-19 113.6 15.2 111 22-143 287-409 (742)
181 cd00881 GTP_translation_factor 99.6 3.7E-14 8E-19 97.2 11.9 110 29-143 61-186 (189)
182 PRK00093 GTP-binding protein D 99.6 2.7E-14 5.8E-19 110.2 12.1 134 6-147 199-347 (435)
183 PRK00093 GTP-binding protein D 99.6 8.5E-14 1.8E-18 107.4 14.8 123 7-143 28-161 (435)
184 cd01895 EngA2 EngA2 subfamily. 99.6 4.2E-13 9.1E-18 90.5 15.3 126 10-142 32-173 (174)
185 KOG0074|consensus 99.6 1.6E-14 3.4E-19 92.7 7.6 126 10-142 44-177 (185)
186 TIGR03594 GTPase_EngA ribosome 99.6 1.1E-13 2.3E-18 106.7 13.7 126 6-145 25-161 (429)
187 PRK05306 infB translation init 99.6 1.4E-13 2.9E-18 111.8 14.7 109 21-142 330-450 (787)
188 cd00880 Era_like Era (E. coli 99.6 1.2E-13 2.6E-18 91.5 12.0 109 29-142 44-162 (163)
189 PF08477 Miro: Miro-like prote 99.6 7.1E-14 1.5E-18 89.3 10.1 84 13-98 32-119 (119)
190 cd00066 G-alpha G protein alph 99.6 1.2E-13 2.5E-18 102.4 12.4 145 3-147 126-314 (317)
191 PRK12298 obgE GTPase CgtA; Rev 99.5 4.9E-13 1.1E-17 101.4 15.4 137 8-146 186-335 (390)
192 TIGR01394 TypA_BipA GTP-bindin 99.5 2.5E-13 5.3E-18 107.9 12.8 121 21-146 55-193 (594)
193 PRK09518 bifunctional cytidyla 99.5 9.4E-13 2E-17 107.0 15.2 127 7-145 302-437 (712)
194 TIGR03680 eif2g_arch translati 99.5 2.9E-13 6.4E-18 103.5 11.0 109 29-144 79-196 (406)
195 TIGR00491 aIF-2 translation in 99.5 5.6E-13 1.2E-17 105.6 12.4 104 32-143 71-215 (590)
196 PF00009 GTP_EFTU: Elongation 99.5 5.3E-13 1.2E-17 92.0 10.7 112 27-143 67-186 (188)
197 PRK10512 selenocysteinyl-tRNA- 99.5 1.1E-12 2.3E-17 104.7 13.7 110 26-145 49-167 (614)
198 COG1160 Predicted GTPases [Gen 99.5 5.9E-13 1.3E-17 100.5 11.5 148 4-158 202-365 (444)
199 PRK04000 translation initiatio 99.5 5.5E-13 1.2E-17 102.1 11.5 109 30-145 85-202 (411)
200 PRK09554 feoB ferrous iron tra 99.5 2E-12 4.4E-17 105.2 15.1 127 7-143 29-167 (772)
201 PRK10218 GTP-binding protein; 99.5 2.6E-12 5.7E-17 102.1 14.9 122 20-146 58-197 (607)
202 TIGR00483 EF-1_alpha translati 99.5 5.2E-13 1.1E-17 102.8 10.1 108 27-136 82-199 (426)
203 PRK00454 engB GTP-binding prot 99.5 4.3E-12 9.4E-17 87.7 13.8 131 6-144 48-194 (196)
204 PRK00089 era GTPase Era; Revie 99.5 2.7E-12 5.9E-17 94.3 13.4 129 10-145 35-172 (292)
205 smart00275 G_alpha G protein a 99.4 1.7E-12 3.6E-17 97.1 11.7 142 4-147 150-337 (342)
206 PRK12317 elongation factor 1-a 99.4 1.1E-12 2.3E-17 101.1 10.5 107 28-136 82-197 (425)
207 cd01896 DRG The developmentall 99.4 1.4E-11 3.1E-16 87.7 15.0 127 8-143 27-225 (233)
208 cd04163 Era Era subfamily. Er 99.4 1E-11 2.2E-16 83.0 13.4 109 29-142 50-167 (168)
209 cd04166 CysN_ATPS CysN_ATPS su 99.4 4.1E-12 8.8E-17 89.0 11.2 108 22-135 71-185 (208)
210 TIGR03598 GTPase_YsxC ribosome 99.4 4.6E-12 9.9E-17 86.7 11.1 119 7-133 43-179 (179)
211 KOG0462|consensus 99.4 3.1E-12 6.6E-17 98.2 11.0 120 26-153 121-244 (650)
212 cd01883 EF1_alpha Eukaryotic e 99.4 3.2E-12 7E-17 90.2 9.1 108 21-133 70-194 (219)
213 PRK04004 translation initiatio 99.4 1.4E-11 3E-16 98.0 12.7 104 32-143 73-217 (586)
214 cd04167 Snu114p Snu114p subfam 99.4 9.3E-12 2E-16 87.5 10.5 70 26-100 67-136 (213)
215 COG1160 Predicted GTPases [Gen 99.4 1.7E-11 3.7E-16 92.7 12.4 125 5-143 28-164 (444)
216 COG0481 LepA Membrane GTPase L 99.4 1.2E-11 2.6E-16 93.8 10.9 121 26-153 72-195 (603)
217 cd04168 TetM_like Tet(M)-like 99.4 5.1E-11 1.1E-15 85.0 13.7 72 24-100 58-129 (237)
218 COG0486 ThdF Predicted GTPase 99.3 4.8E-11 1E-15 90.5 13.5 131 3-146 240-378 (454)
219 KOG1707|consensus 99.3 3.9E-12 8.4E-17 98.2 7.7 141 5-147 32-178 (625)
220 PRK14845 translation initiatio 99.3 3.9E-11 8.5E-16 99.8 13.0 104 32-143 528-672 (1049)
221 cd01876 YihA_EngB The YihA (En 99.3 1.1E-10 2.4E-15 78.2 12.1 128 5-142 22-169 (170)
222 cd04165 GTPBP1_like GTPBP1-lik 99.3 1.9E-10 4.1E-15 81.4 13.4 104 31-140 85-219 (224)
223 COG0532 InfB Translation initi 99.3 1.1E-10 2.3E-15 89.8 12.9 105 31-146 56-172 (509)
224 KOG0077|consensus 99.3 1.4E-11 3E-16 81.3 6.9 127 7-142 48-191 (193)
225 cd01885 EF2 EF2 (for archaea a 99.3 6.3E-11 1.4E-15 83.7 10.7 79 27-110 70-149 (222)
226 COG1159 Era GTPase [General fu 99.3 1.7E-10 3.6E-15 83.1 12.0 133 6-145 32-173 (298)
227 PRK12736 elongation factor Tu; 99.2 3E-10 6.5E-15 86.7 12.9 110 30-144 75-201 (394)
228 TIGR00485 EF-Tu translation el 99.2 2.7E-10 5.8E-15 87.0 12.5 102 24-130 69-179 (394)
229 cd01855 YqeH YqeH. YqeH is an 99.2 1.3E-10 2.9E-15 80.2 9.7 93 43-143 24-124 (190)
230 COG0370 FeoB Fe2+ transport sy 99.2 3.8E-10 8.2E-15 89.1 13.1 133 5-147 27-167 (653)
231 cd01884 EF_Tu EF-Tu subfamily. 99.2 6.8E-10 1.5E-14 77.0 13.0 98 30-132 65-171 (195)
232 KOG1145|consensus 99.2 5.5E-10 1.2E-14 86.2 13.0 109 26-147 199-319 (683)
233 PRK00741 prfC peptide chain re 99.2 4.6E-10 9.9E-15 88.4 12.9 72 24-100 73-144 (526)
234 cd01859 MJ1464 MJ1464. This f 99.2 7.4E-11 1.6E-15 79.0 7.3 95 43-144 2-96 (156)
235 cd01854 YjeQ_engC YjeQ/EngC. 99.2 2.1E-10 4.5E-15 84.1 10.1 87 49-141 74-161 (287)
236 PRK00098 GTPase RsgA; Reviewed 99.2 2.9E-10 6.3E-15 83.8 10.3 86 50-140 77-163 (298)
237 PLN00043 elongation factor 1-a 99.2 3.9E-10 8.4E-15 87.3 11.4 102 27-134 82-203 (447)
238 cd04169 RF3 RF3 subfamily. Pe 99.2 1.3E-09 2.9E-14 79.1 13.3 93 21-120 62-154 (267)
239 PTZ00327 eukaryotic translatio 99.2 6.3E-10 1.4E-14 86.1 11.5 111 31-144 118-233 (460)
240 PF10662 PduV-EutP: Ethanolami 99.2 4.5E-10 9.7E-15 73.5 9.0 99 33-140 39-142 (143)
241 PRK12289 GTPase RsgA; Reviewed 99.1 2.1E-10 4.6E-15 85.9 8.3 91 45-141 81-172 (352)
242 KOG0082|consensus 99.1 5.1E-10 1.1E-14 83.0 9.5 144 3-148 160-348 (354)
243 PRK09866 hypothetical protein; 99.1 2.6E-09 5.7E-14 84.5 13.6 109 30-141 230-350 (741)
244 KOG1489|consensus 99.1 9.8E-10 2.1E-14 79.8 10.2 107 32-141 246-364 (366)
245 COG2262 HflX GTPases [General 99.1 6.7E-09 1.5E-13 77.9 14.7 134 6-147 217-359 (411)
246 PRK12735 elongation factor Tu; 99.1 2E-09 4.4E-14 82.3 12.3 109 30-143 75-202 (396)
247 PRK13351 elongation factor G; 99.1 4.3E-09 9.3E-14 85.7 13.3 67 29-100 72-138 (687)
248 PRK12288 GTPase RsgA; Reviewed 99.1 1.6E-09 3.5E-14 81.2 9.9 87 51-141 118-205 (347)
249 TIGR03597 GTPase_YqeH ribosome 99.1 1.4E-09 3E-14 82.2 9.5 95 40-142 50-151 (360)
250 PRK05124 cysN sulfate adenylyl 99.1 2.9E-09 6.3E-14 83.0 11.4 102 30-135 107-216 (474)
251 TIGR02034 CysN sulfate adenyly 99.1 3.5E-09 7.6E-14 81.2 11.6 100 31-134 81-187 (406)
252 PRK13768 GTPase; Provisional 99.0 3.8E-09 8.1E-14 76.2 10.0 109 31-143 98-246 (253)
253 PF04670 Gtr1_RagA: Gtr1/RagA 99.0 1.4E-08 3E-13 72.0 12.0 121 27-150 45-182 (232)
254 COG1217 TypA Predicted membran 99.0 1.3E-08 2.8E-13 77.5 11.0 124 24-152 62-203 (603)
255 CHL00071 tufA elongation facto 99.0 2.2E-08 4.8E-13 76.9 12.6 96 31-131 76-180 (409)
256 PRK00049 elongation factor Tu; 98.9 2.9E-08 6.4E-13 75.9 12.7 108 30-142 75-201 (396)
257 PRK12740 elongation factor G; 98.9 4.2E-08 9.2E-13 79.7 14.2 71 23-100 55-125 (668)
258 PLN03127 Elongation factor Tu; 98.9 4.2E-08 9.1E-13 76.0 13.1 109 30-143 124-251 (447)
259 PRK05506 bifunctional sulfate 98.9 1.9E-08 4.1E-13 81.2 11.6 105 24-134 100-211 (632)
260 cd01886 EF-G Elongation factor 98.9 2.8E-08 6E-13 72.3 11.3 95 23-127 59-158 (270)
261 PLN03126 Elongation factor Tu; 98.9 6.2E-08 1.3E-12 75.6 12.8 96 31-131 145-249 (478)
262 COG1084 Predicted GTPase [Gene 98.9 5.5E-08 1.2E-12 71.2 11.6 132 8-146 195-338 (346)
263 TIGR00503 prfC peptide chain r 98.9 2.3E-08 4.9E-13 78.9 10.5 76 21-101 71-146 (527)
264 COG0536 Obg Predicted GTPase [ 98.9 2.4E-08 5.2E-13 73.4 9.6 137 9-147 187-336 (369)
265 cd01899 Ygr210 Ygr210 subfamil 98.9 8E-08 1.7E-12 71.3 12.4 55 87-145 214-270 (318)
266 PTZ00141 elongation factor 1- 98.9 3.9E-08 8.5E-13 76.3 10.8 103 28-134 83-203 (446)
267 TIGR00484 EF-G translation elo 98.8 8.4E-08 1.8E-12 78.2 13.0 100 21-129 68-171 (689)
268 PRK12739 elongation factor G; 98.8 1.2E-07 2.7E-12 77.2 13.6 73 21-100 66-138 (691)
269 KOG0090|consensus 98.8 7.5E-08 1.6E-12 66.4 10.4 119 21-142 75-237 (238)
270 COG2895 CysN GTPases - Sulfate 98.8 3.7E-08 8E-13 72.7 8.9 105 24-134 82-193 (431)
271 PF09439 SRPRB: Signal recogni 98.8 3.9E-08 8.5E-13 67.0 8.3 72 31-102 50-127 (181)
272 cd04170 EF-G_bact Elongation f 98.8 3.2E-07 6.9E-12 66.7 13.1 99 30-135 64-164 (268)
273 PF00503 G-alpha: G-protein al 98.8 1.3E-08 2.7E-13 77.8 6.0 138 4-143 201-389 (389)
274 KOG1707|consensus 98.8 8.8E-08 1.9E-12 74.6 10.3 139 3-147 446-586 (625)
275 KOG1191|consensus 98.7 8.6E-08 1.9E-12 73.4 9.0 143 4-149 292-455 (531)
276 cd01858 NGP_1 NGP-1. Autoanti 98.7 6.4E-08 1.4E-12 64.8 7.3 88 50-143 5-94 (157)
277 cd01849 YlqF_related_GTPase Yl 98.7 7.3E-08 1.6E-12 64.4 7.5 85 55-144 1-85 (155)
278 KOG1423|consensus 98.7 4E-07 8.8E-12 66.2 11.2 126 13-145 105-272 (379)
279 KOG0705|consensus 98.7 1.9E-07 4E-12 72.5 9.9 139 3-147 51-192 (749)
280 TIGR03596 GTPase_YlqF ribosome 98.7 1.5E-07 3.3E-12 68.7 8.6 92 46-146 14-105 (276)
281 cd01856 YlqF YlqF. Proteins o 98.7 1E-07 2.2E-12 64.7 7.2 93 42-143 8-100 (171)
282 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 1.5E-07 3.2E-12 62.0 7.7 76 48-130 6-83 (141)
283 COG5256 TEF1 Translation elong 98.6 3.9E-07 8.4E-12 68.6 9.3 108 26-135 81-202 (428)
284 PRK13796 GTPase YqeH; Provisio 98.6 5.2E-07 1.1E-11 68.4 10.0 93 42-142 58-157 (365)
285 cd01850 CDC_Septin CDC/Septin. 98.6 2.7E-07 5.8E-12 67.4 7.7 113 11-128 43-186 (276)
286 TIGR00490 aEF-2 translation el 98.6 2.4E-07 5.2E-12 75.9 8.2 83 13-100 68-151 (720)
287 COG1163 DRG Predicted GTPase [ 98.6 1E-06 2.3E-11 64.5 10.3 129 8-145 90-290 (365)
288 PRK09563 rbgA GTPase YlqF; Rev 98.5 3.6E-07 7.9E-12 67.1 7.4 92 46-146 17-108 (287)
289 cd04104 p47_IIGP_like p47 (47- 98.5 9.4E-07 2E-11 61.4 8.8 109 31-147 53-187 (197)
290 smart00010 small_GTPase Small 98.5 6.1E-07 1.3E-11 57.2 7.2 77 46-133 39-115 (124)
291 TIGR00101 ureG urease accessor 98.5 1.7E-06 3.6E-11 60.3 9.8 102 31-144 93-196 (199)
292 COG0218 Predicted GTPase [Gene 98.5 4.3E-06 9.3E-11 57.5 11.4 108 32-145 72-198 (200)
293 KOG1144|consensus 98.5 4E-07 8.7E-12 72.9 7.2 108 32-147 542-690 (1064)
294 KOG1490|consensus 98.5 1.2E-06 2.6E-11 67.5 9.4 118 30-149 215-346 (620)
295 PRK01889 GTPase RsgA; Reviewed 98.5 8.7E-07 1.9E-11 67.0 8.2 83 51-140 110-193 (356)
296 KOG0099|consensus 98.4 1.3E-06 2.8E-11 62.4 7.8 139 8-148 172-373 (379)
297 PRK00007 elongation factor G; 98.4 4.1E-06 8.9E-11 68.5 11.7 101 20-129 67-171 (693)
298 COG4917 EutP Ethanolamine util 98.4 2.4E-06 5.2E-11 54.3 7.4 97 35-141 42-143 (148)
299 COG4108 PrfC Peptide chain rel 98.4 4.9E-06 1.1E-10 63.4 9.7 97 20-123 71-167 (528)
300 COG5257 GCD11 Translation init 98.4 2E-06 4.4E-11 63.0 7.4 110 31-147 87-205 (415)
301 PRK09602 translation-associate 98.4 2E-05 4.3E-10 60.4 13.1 52 87-142 217-269 (396)
302 PRK07560 elongation factor EF- 98.4 1.2E-05 2.6E-10 66.2 12.7 71 25-100 82-152 (731)
303 TIGR00073 hypB hydrogenase acc 98.3 3.1E-06 6.7E-11 59.3 7.3 56 87-142 148-205 (207)
304 COG3276 SelB Selenocysteine-sp 98.3 1.9E-05 4.2E-10 60.1 11.5 106 31-144 51-162 (447)
305 PF03029 ATP_bind_1: Conserved 98.3 9.3E-07 2E-11 63.2 4.2 109 32-143 93-236 (238)
306 PRK09435 membrane ATPase/prote 98.3 2.5E-05 5.3E-10 58.4 11.2 104 30-146 149-262 (332)
307 PF01926 MMR_HSR1: 50S ribosom 98.2 3E-05 6.6E-10 49.0 9.8 79 8-96 27-116 (116)
308 COG1162 Predicted GTPases [Gen 98.2 1E-05 2.2E-10 59.2 8.3 92 46-141 72-164 (301)
309 TIGR00750 lao LAO/AO transport 98.2 9.6E-06 2.1E-10 60.0 7.4 103 30-144 127-238 (300)
310 KOG0461|consensus 98.1 3.1E-05 6.7E-10 57.6 9.2 123 26-153 66-202 (522)
311 cd01852 AIG1 AIG1 (avrRpt2-ind 98.1 0.00031 6.7E-09 48.7 13.8 129 16-148 37-188 (196)
312 PLN00116 translation elongatio 98.1 8.7E-06 1.9E-10 67.9 7.0 68 28-100 96-163 (843)
313 PTZ00416 elongation factor 2; 98.1 1.4E-05 3E-10 66.7 7.6 67 29-100 91-157 (836)
314 KOG0458|consensus 98.1 2.6E-05 5.7E-10 61.2 8.4 112 22-135 247-373 (603)
315 COG0480 FusA Translation elong 98.0 8.8E-05 1.9E-09 60.5 10.8 68 29-101 75-142 (697)
316 COG3596 Predicted GTPase [Gene 98.0 0.00013 2.8E-09 52.7 10.4 115 24-144 83-222 (296)
317 COG0050 TufB GTPases - transla 98.0 7.8E-05 1.7E-09 54.4 9.2 110 26-145 73-202 (394)
318 KOG3905|consensus 98.0 0.00031 6.8E-09 52.0 12.1 118 28-145 98-291 (473)
319 PF06858 NOG1: Nucleolar GTP-b 98.0 4.2E-05 9.1E-10 41.9 5.7 45 52-98 12-58 (58)
320 PF05783 DLIC: Dynein light in 97.9 0.00039 8.4E-09 54.4 12.8 139 9-147 49-267 (472)
321 KOG0085|consensus 97.9 1.6E-05 3.4E-10 56.1 4.6 142 6-147 167-352 (359)
322 KOG0468|consensus 97.9 2.3E-05 4.9E-10 62.6 5.8 69 26-99 193-261 (971)
323 cd01882 BMS1 Bms1. Bms1 is an 97.9 0.00016 3.4E-09 51.4 8.6 93 30-130 83-182 (225)
324 KOG3886|consensus 97.9 5.1E-05 1.1E-09 53.5 5.8 108 30-140 53-174 (295)
325 PTZ00258 GTP-binding protein; 97.8 0.0005 1.1E-08 52.6 11.1 44 86-129 219-265 (390)
326 KOG1532|consensus 97.8 0.00029 6.2E-09 51.1 9.1 114 30-146 116-266 (366)
327 COG5258 GTPBP1 GTPase [General 97.7 0.00068 1.5E-08 51.3 10.5 104 32-140 203-335 (527)
328 TIGR02836 spore_IV_A stage IV 97.7 0.0011 2.4E-08 51.0 11.1 84 53-142 144-235 (492)
329 smart00053 DYNc Dynamin, GTPas 97.6 0.00055 1.2E-08 49.1 8.0 68 30-101 125-206 (240)
330 TIGR00991 3a0901s02IAP34 GTP-b 97.6 0.0028 6E-08 47.0 11.7 80 24-107 82-173 (313)
331 COG0378 HypB Ni2+-binding GTPa 97.6 0.0002 4.4E-09 49.2 5.3 55 89-143 144-200 (202)
332 cd03110 Fer4_NifH_child This p 97.5 0.0026 5.6E-08 43.3 10.5 86 28-123 91-176 (179)
333 PF00350 Dynamin_N: Dynamin fa 97.4 0.00069 1.5E-08 45.5 6.2 62 32-97 103-168 (168)
334 KOG0466|consensus 97.3 0.00036 7.7E-09 51.3 4.4 107 31-144 126-241 (466)
335 PRK10463 hydrogenase nickel in 97.3 0.00062 1.3E-08 50.0 5.5 56 87-142 230-287 (290)
336 KOG0465|consensus 97.2 0.0021 4.6E-08 51.3 8.0 66 29-99 103-168 (721)
337 PRK09601 GTP-binding protein Y 97.2 0.018 3.9E-07 43.8 12.7 41 87-127 199-240 (364)
338 KOG3887|consensus 97.2 0.0038 8.2E-08 44.6 8.4 118 28-148 73-206 (347)
339 KOG0460|consensus 97.1 0.0036 7.9E-08 46.8 7.7 91 27-127 116-218 (449)
340 PF04548 AIG1: AIG1 family; I 97.1 0.011 2.3E-07 41.6 9.9 129 17-149 38-191 (212)
341 cd01853 Toc34_like Toc34-like 97.1 0.018 3.9E-07 41.6 11.1 89 10-101 61-163 (249)
342 COG1161 Predicted GTPases [Gen 96.8 0.0034 7.3E-08 47.0 5.5 93 37-137 17-110 (322)
343 COG1703 ArgK Putative periplas 96.7 0.026 5.6E-07 41.6 9.2 104 32-148 146-258 (323)
344 KOG0467|consensus 96.7 0.0063 1.4E-07 49.8 6.4 68 27-99 69-136 (887)
345 cd04178 Nucleostemin_like Nucl 96.6 0.0071 1.5E-07 41.2 5.3 44 55-101 1-44 (172)
346 KOG1424|consensus 96.5 0.0067 1.5E-07 47.6 5.5 75 43-128 165-244 (562)
347 PF03308 ArgK: ArgK protein; 96.5 0.0023 5.1E-08 46.1 2.6 99 32-143 124-229 (266)
348 KOG0464|consensus 96.4 0.0012 2.7E-08 50.5 1.1 76 20-100 92-167 (753)
349 PF11111 CENP-M: Centromere pr 96.4 0.088 1.9E-06 35.7 9.5 91 53-145 64-154 (176)
350 KOG1954|consensus 96.2 0.017 3.7E-07 43.9 6.0 67 31-101 148-225 (532)
351 KOG0410|consensus 96.1 0.015 3.3E-07 43.4 5.0 108 26-146 224-343 (410)
352 KOG1486|consensus 95.9 0.17 3.7E-06 36.7 9.6 60 8-69 89-155 (364)
353 KOG1143|consensus 95.9 0.07 1.5E-06 40.7 8.0 100 31-135 250-379 (591)
354 PF05049 IIGP: Interferon-indu 95.7 0.25 5.4E-06 37.9 10.4 106 32-145 88-219 (376)
355 KOG0469|consensus 95.6 0.023 5E-07 44.8 4.5 69 26-99 94-162 (842)
356 TIGR00064 ftsY signal recognit 95.6 0.33 7.2E-06 35.6 10.3 93 30-136 155-260 (272)
357 COG1149 MinD superfamily P-loo 95.3 0.3 6.5E-06 35.7 9.2 80 30-122 164-243 (284)
358 cd02038 FleN-like FleN is a me 95.1 0.27 5.9E-06 32.0 8.0 65 30-99 45-109 (139)
359 PRK10416 signal recognition pa 95.0 0.4 8.8E-06 36.0 9.5 92 30-135 197-301 (318)
360 KOG0459|consensus 94.9 0.068 1.5E-06 41.1 5.1 104 31-137 158-279 (501)
361 PHA02518 ParA-like protein; Pr 94.8 0.6 1.3E-05 32.3 9.5 67 29-99 76-145 (211)
362 PRK14974 cell division protein 94.5 0.61 1.3E-05 35.3 9.4 92 31-136 224-322 (336)
363 COG3640 CooC CO dehydrogenase 94.5 0.28 6E-06 35.2 7.0 75 32-120 136-212 (255)
364 TIGR00993 3a0901s04IAP86 chlor 94.4 1.2 2.7E-05 36.9 11.4 77 23-101 161-250 (763)
365 PF14331 ImcF-related_N: ImcF- 94.4 0.33 7.1E-06 35.5 7.6 91 53-147 25-134 (266)
366 KOG4273|consensus 94.2 0.18 4E-06 36.4 5.8 44 52-99 77-121 (418)
367 KOG0448|consensus 94.1 0.59 1.3E-05 38.4 8.9 91 32-127 208-309 (749)
368 COG4963 CpaE Flp pilus assembl 94.1 1.3 2.7E-05 33.9 10.1 83 29-120 217-299 (366)
369 cd02036 MinD Bacterial cell di 94.0 1.2 2.6E-05 29.9 10.4 84 31-122 64-147 (179)
370 cd01900 YchF YchF subfamily. 93.9 0.18 3.9E-06 37.0 5.4 58 7-64 24-103 (274)
371 cd03111 CpaE_like This protein 93.6 1.1 2.3E-05 27.8 8.1 63 31-96 44-106 (106)
372 PRK13505 formate--tetrahydrofo 93.5 0.85 1.8E-05 36.7 8.7 70 69-144 358-429 (557)
373 KOG2484|consensus 93.5 0.22 4.7E-06 38.3 5.3 66 41-116 134-201 (435)
374 cd02117 NifH_like This family 93.2 1.4 3E-05 30.8 8.9 90 29-123 116-207 (212)
375 PRK13185 chlL protochlorophyll 92.5 2 4.3E-05 31.2 9.1 85 29-122 117-202 (270)
376 TIGR03371 cellulose_yhjQ cellu 92.5 2.8 6.1E-05 29.8 10.4 66 31-100 116-181 (246)
377 PF09419 PGP_phosphatase: Mito 92.4 2.4 5.2E-05 28.8 9.9 86 51-140 36-128 (168)
378 TIGR03348 VI_IcmF type VI secr 92.2 0.58 1.3E-05 41.3 6.8 66 34-100 165-256 (1169)
379 KOG0447|consensus 91.7 2.6 5.7E-05 34.2 9.3 81 31-115 413-507 (980)
380 KOG3929|consensus 91.7 0.28 6.1E-06 35.7 3.7 58 11-68 71-134 (363)
381 KOG2423|consensus 91.4 1.3 2.7E-05 34.5 7.0 81 46-132 203-288 (572)
382 PF09547 Spore_IV_A: Stage IV 91.2 1.6 3.5E-05 34.2 7.5 82 54-141 146-234 (492)
383 KOG2486|consensus 91.0 0.64 1.4E-05 34.2 5.0 103 32-141 185-313 (320)
384 TIGR01968 minD_bact septum sit 90.9 4.4 9.6E-05 28.9 9.7 64 30-99 112-175 (261)
385 cd02032 Bchl_like This family 90.9 4 8.6E-05 29.6 9.2 83 29-120 115-198 (267)
386 cd03112 CobW_like The function 90.8 1.3 2.9E-05 29.5 6.2 64 29-99 86-158 (158)
387 CHL00175 minD septum-site dete 90.6 5.2 0.00011 29.2 9.7 65 29-99 126-190 (281)
388 TIGR00959 ffh signal recogniti 90.1 7.4 0.00016 30.6 10.4 86 30-126 183-274 (428)
389 PRK10818 cell division inhibit 88.9 7.1 0.00015 28.3 9.3 68 29-99 113-185 (270)
390 COG0012 Predicted GTPase, prob 88.7 1.6 3.4E-05 33.4 5.7 41 86-127 205-247 (372)
391 TIGR01425 SRP54_euk signal rec 88.3 6.8 0.00015 30.8 9.1 86 29-125 182-273 (429)
392 PRK00771 signal recognition pa 88.0 8.8 0.00019 30.3 9.6 85 31-126 177-267 (437)
393 TIGR01281 DPOR_bchL light-inde 88.0 7 0.00015 28.3 8.7 69 29-99 115-184 (268)
394 cd02037 MRP-like MRP (Multiple 87.4 6.7 0.00014 26.2 9.4 87 29-122 67-162 (169)
395 KOG0463|consensus 87.3 7.1 0.00015 30.4 8.3 95 32-135 221-349 (641)
396 PRK13849 putative crown gall t 87.3 8.8 0.00019 27.4 9.3 67 29-98 83-151 (231)
397 PF03193 DUF258: Protein of un 85.4 2.3 5E-05 28.7 4.6 30 110-139 4-33 (161)
398 cd02040 NifH NifH gene encodes 85.3 12 0.00025 27.0 8.9 67 29-96 116-184 (270)
399 PRK12727 flagellar biosynthesi 84.2 21 0.00045 29.2 9.9 86 30-126 429-519 (559)
400 cd03114 ArgK-like The function 84.2 6.9 0.00015 25.8 6.4 58 29-98 91-148 (148)
401 COG0523 Putative GTPases (G3E 83.9 13 0.00028 28.2 8.4 89 30-127 85-185 (323)
402 PRK10867 signal recognition pa 83.4 17 0.00038 28.7 9.2 86 30-126 184-275 (433)
403 PF00735 Septin: Septin; Inte 83.1 7.1 0.00015 28.8 6.7 99 21-124 54-181 (281)
404 cd03115 SRP The signal recogni 83.1 11 0.00025 25.1 9.4 82 31-123 84-171 (173)
405 PF10087 DUF2325: Uncharacteri 81.8 9.2 0.0002 23.1 6.1 18 108-125 65-82 (97)
406 CHL00072 chlL photochlorophyll 81.4 19 0.00042 26.6 12.1 115 30-147 116-247 (290)
407 KOG2485|consensus 80.9 8.3 0.00018 29.0 6.2 103 35-145 27-135 (335)
408 PF07015 VirC1: VirC1 protein; 80.9 18 0.00039 26.0 8.3 102 30-137 84-187 (231)
409 PF01656 CbiA: CobQ/CobB/MinD/ 79.9 8.8 0.00019 25.9 6.0 68 30-101 95-162 (195)
410 KOG1547|consensus 79.2 22 0.00048 26.0 8.6 118 20-143 94-242 (336)
411 PRK11537 putative GTP-binding 79.0 16 0.00035 27.5 7.5 85 30-125 91-186 (318)
412 TIGR01007 eps_fam capsular exo 77.9 20 0.00043 24.7 7.3 65 30-100 128-193 (204)
413 TIGR01969 minD_arch cell divis 77.6 22 0.00048 25.1 9.7 63 30-99 109-172 (251)
414 TIGR00092 GTP-binding protein 77.4 5 0.00011 30.9 4.4 57 8-64 30-108 (368)
415 COG2452 Predicted site-specifi 76.8 22 0.00048 24.7 7.4 69 74-146 101-169 (193)
416 cd02042 ParA ParA and ParB of 74.8 16 0.00034 22.0 7.5 45 30-77 40-84 (104)
417 TIGR03815 CpaE_hom_Actino heli 74.1 34 0.00074 25.6 8.7 81 30-123 205-285 (322)
418 PRK12726 flagellar biosynthesi 73.9 41 0.00089 26.4 8.9 86 30-126 286-377 (407)
419 TIGR01287 nifH nitrogenase iro 73.5 32 0.0007 25.0 8.6 67 29-96 115-183 (275)
420 cd04170 EF-G_bact Elongation f 73.4 9.2 0.0002 27.8 4.8 25 119-143 241-265 (268)
421 cd00477 FTHFS Formyltetrahydro 72.7 34 0.00073 27.7 7.9 57 86-144 355-413 (524)
422 TIGR03029 EpsG chain length de 72.4 28 0.00061 25.3 7.2 50 30-81 213-262 (274)
423 COG1419 FlhF Flagellar GTP-bin 72.3 45 0.00098 26.1 8.5 107 30-147 282-397 (407)
424 COG4502 5'(3')-deoxyribonucleo 71.6 15 0.00033 24.3 4.9 50 46-97 76-125 (180)
425 KOG0781|consensus 71.3 53 0.0011 26.6 8.5 71 30-101 467-544 (587)
426 PRK13507 formate--tetrahydrofo 71.2 35 0.00076 28.0 7.7 57 86-144 400-458 (587)
427 COG3523 IcmF Type VI protein s 71.0 17 0.00037 32.5 6.4 67 34-101 178-270 (1188)
428 KOG0780|consensus 70.2 30 0.00064 27.2 6.9 45 27-71 181-231 (483)
429 TIGR02016 BchX chlorophyllide 69.8 43 0.00094 24.9 9.9 110 29-148 122-253 (296)
430 COG1908 FrhD Coenzyme F420-red 69.8 16 0.00035 23.4 4.6 43 108-150 81-128 (132)
431 COG2179 Predicted hydrolase of 68.4 28 0.00061 23.8 5.8 45 66-123 45-89 (175)
432 PRK13695 putative NTPase; Prov 67.9 34 0.00073 22.9 8.9 77 50-143 93-172 (174)
433 PF10087 DUF2325: Uncharacteri 66.6 26 0.00056 21.1 7.4 46 41-93 36-81 (97)
434 PRK14722 flhF flagellar biosyn 66.0 61 0.0013 25.2 9.3 93 30-126 216-316 (374)
435 PF03709 OKR_DC_1_N: Orn/Lys/A 65.7 31 0.00066 21.6 6.5 47 48-97 31-77 (115)
436 PF00448 SRP54: SRP54-type pro 65.3 43 0.00094 23.2 9.3 84 30-125 84-174 (196)
437 PF01939 DUF91: Protein of unk 64.9 23 0.0005 25.4 5.2 64 54-126 145-212 (228)
438 cd01886 EF-G Elongation factor 64.1 19 0.00042 26.4 4.9 25 119-143 243-267 (270)
439 PRK05703 flhF flagellar biosyn 62.5 75 0.0016 25.1 10.3 85 30-126 300-392 (424)
440 COG1010 CobJ Precorrin-3B meth 61.5 60 0.0013 23.5 6.6 47 50-97 151-197 (249)
441 PRK13230 nitrogenase reductase 61.5 61 0.0013 23.6 8.1 52 30-82 117-169 (279)
442 PF02492 cobW: CobW/HypB/UreG, 61.4 13 0.00028 25.2 3.3 64 32-102 87-156 (178)
443 PLN02759 Formate--tetrahydrofo 61.2 59 0.0013 27.0 7.3 57 86-144 449-508 (637)
444 PF00205 TPP_enzyme_M: Thiamin 60.6 6.4 0.00014 25.3 1.7 38 86-127 11-48 (137)
445 COG2759 MIS1 Formyltetrahydrof 60.5 64 0.0014 25.9 7.1 58 86-145 368-427 (554)
446 PRK13506 formate--tetrahydrofo 59.3 90 0.0019 25.7 7.9 57 86-144 392-451 (578)
447 PF08438 MMR_HSR1_C: GTPase of 59.2 12 0.00025 23.6 2.6 31 93-127 1-32 (109)
448 PRK06731 flhF flagellar biosyn 57.8 74 0.0016 23.4 9.5 85 30-126 155-246 (270)
449 TIGR03488 cas_Cas5p CRISPR-ass 57.6 3.6 7.7E-05 27.9 0.1 79 35-126 108-188 (237)
450 PRK13660 hypothetical protein; 57.4 61 0.0013 22.4 6.7 15 51-65 127-141 (182)
451 PF07905 PucR: Purine cataboli 56.4 49 0.0011 20.9 10.8 95 31-143 27-122 (123)
452 PF02662 FlpD: Methyl-viologen 55.7 52 0.0011 21.0 7.6 79 39-144 38-121 (124)
453 PRK13234 nifH nitrogenase redu 55.6 83 0.0018 23.3 8.5 68 29-97 119-188 (295)
454 cd02035 ArsA ArsA ATPase funct 55.4 69 0.0015 22.4 6.6 67 30-100 114-183 (217)
455 cd01900 YchF YchF subfamily. 55.3 16 0.00034 27.0 3.1 41 87-128 195-237 (274)
456 PRK11889 flhF flagellar biosyn 54.9 1.1E+02 0.0023 24.4 9.2 86 30-126 321-412 (436)
457 TIGR01005 eps_transp_fam exopo 54.6 58 0.0013 27.6 6.7 67 29-100 655-721 (754)
458 COG0012 Predicted GTPase, prob 54.2 12 0.00025 28.9 2.3 37 29-65 66-109 (372)
459 PRK13556 azoreductase; Provisi 54.1 72 0.0016 22.2 8.9 46 50-95 86-143 (208)
460 KOG1487|consensus 54.1 17 0.00037 26.9 3.0 50 87-144 231-281 (358)
461 PF01268 FTHFS: Formate--tetra 53.8 13 0.00029 30.2 2.6 57 86-144 370-428 (557)
462 PTZ00386 formyl tetrahydrofola 53.7 1.3E+02 0.0027 25.1 8.0 57 86-144 436-496 (625)
463 PF14606 Lipase_GDSL_3: GDSL-l 53.0 63 0.0014 22.2 5.5 57 36-94 40-100 (178)
464 KOG1534|consensus 52.5 71 0.0015 23.0 5.7 25 119-143 226-250 (273)
465 PRK11670 antiporter inner memb 52.5 1.1E+02 0.0023 23.7 10.7 65 30-99 216-281 (369)
466 PF10036 RLL: Putative carniti 51.1 41 0.0009 24.4 4.7 71 61-145 17-89 (249)
467 TIGR00315 cdhB CO dehydrogenas 51.0 41 0.0009 22.7 4.4 36 86-125 27-62 (162)
468 COG3033 TnaA Tryptophanase [Am 50.9 66 0.0014 25.1 5.7 56 69-128 171-229 (471)
469 PRK13235 nifH nitrogenase redu 50.7 94 0.002 22.5 8.8 68 29-97 117-186 (274)
470 KOG2052|consensus 50.5 25 0.00054 28.0 3.6 48 31-78 212-259 (513)
471 cd04169 RF3 RF3 subfamily. Pe 50.4 15 0.00032 26.9 2.3 25 119-143 240-264 (267)
472 COG0552 FtsY Signal recognitio 50.3 1.1E+02 0.0025 23.4 7.6 93 29-135 221-326 (340)
473 cd00959 DeoC 2-deoxyribose-5-p 49.9 85 0.0018 21.8 6.7 70 51-125 80-151 (203)
474 TIGR03018 pepcterm_TyrKin exop 48.7 88 0.0019 21.6 7.3 33 32-65 151-183 (207)
475 KOG1249|consensus 48.7 36 0.00079 27.7 4.3 83 52-142 109-209 (572)
476 PF14784 ECIST_Cterm: C-termin 48.4 44 0.00096 21.6 4.0 40 53-92 83-123 (126)
477 PRK14723 flhF flagellar biosyn 48.3 1.8E+02 0.0039 25.1 10.0 87 31-126 265-358 (767)
478 cd01840 SGNH_hydrolase_yrhL_li 48.0 75 0.0016 20.6 6.1 65 53-123 50-115 (150)
479 PRK13555 azoreductase; Provisi 47.6 67 0.0015 22.6 5.2 47 49-95 85-143 (208)
480 cd02033 BchX Chlorophyllide re 47.3 1.3E+02 0.0027 23.0 11.6 85 54-148 173-277 (329)
481 PF07764 Omega_Repress: Omega 46.8 15 0.00032 20.4 1.4 22 125-146 44-65 (71)
482 PF04273 DUF442: Putative phos 46.4 72 0.0016 19.9 6.0 53 91-143 30-82 (110)
483 TIGR02475 CobW cobalamin biosy 46.2 1.3E+02 0.0029 22.9 8.3 36 30-65 93-135 (341)
484 cd08166 MPP_Cdc1_like_1 unchar 46.1 92 0.002 21.8 5.6 65 53-117 42-111 (195)
485 cd02067 B12-binding B12 bindin 45.2 57 0.0012 20.2 4.2 60 53-125 50-109 (119)
486 TIGR03566 FMN_reduc_MsuE FMN r 45.1 56 0.0012 22.0 4.4 49 47-96 62-110 (174)
487 TIGR03280 methan_mark_11 putat 43.6 1.4E+02 0.003 22.4 8.6 81 52-135 186-276 (292)
488 PRK06242 flavodoxin; Provision 42.9 91 0.002 20.1 6.4 67 50-122 40-106 (150)
489 PF12317 IFT46_B_C: Intraflage 42.9 38 0.00083 24.0 3.3 82 5-86 39-132 (214)
490 PF02603 Hpr_kinase_N: HPr Ser 42.7 43 0.00094 21.4 3.4 36 86-128 80-115 (127)
491 cd01828 sialate_O-acetylestera 41.3 1E+02 0.0022 20.2 6.6 71 51-124 46-130 (169)
492 TIGR03790 conserved hypothetic 41.1 1.5E+02 0.0032 22.6 6.2 49 90-143 3-56 (316)
493 PF10881 DUF2726: Protein of u 40.2 94 0.002 19.6 4.7 33 110-142 93-125 (126)
494 TIGR00503 prfC peptide chain r 40.0 28 0.00061 28.3 2.6 29 119-147 250-278 (527)
495 PF09827 CRISPR_Cas2: CRISPR a 40.0 41 0.00089 19.3 2.7 25 56-80 3-27 (78)
496 PRK14725 pyruvate kinase; Prov 39.8 2.3E+02 0.0049 23.8 9.2 76 69-147 517-594 (608)
497 PRK13231 nitrogenase reductase 38.7 1.5E+02 0.0032 21.3 8.0 52 30-82 114-166 (264)
498 COG4359 Uncharacterized conser 38.5 62 0.0014 22.6 3.7 35 107-141 78-112 (220)
499 PF08468 MTS_N: Methyltransfer 38.4 1E+02 0.0023 20.6 4.8 43 52-99 68-110 (155)
500 KOG2733|consensus 38.4 75 0.0016 24.7 4.4 21 54-74 62-82 (423)
No 1
>KOG0084|consensus
Probab=100.00 E-value=3.4e-38 Score=210.91 Aligned_cols=148 Identities=33% Similarity=0.550 Sum_probs=140.1
Q ss_pred cccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
|.++.|.+.|..|+|..| .+.+.++|+.+++|+|||+||+||+++..+|+++|||||+|||+++.+||..+..|+.++.
T Consensus 29 f~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~ 108 (205)
T KOG0084|consen 29 FKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEID 108 (205)
T ss_pred hccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhh
Confidence 467899999999999887 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCc-EEEeCCCCCCCHHHHHHHHHHHHHhccccC
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIP-YIECSAKVRINVDQAFHELVRIVLLHTKQC 150 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~ 150 (159)
++.. .++|.++||||+|+.+.+.++.++++.|+.+++++ ++|+||+++.|++++|..+...+.+++...
T Consensus 109 ~~~~-~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~~ 178 (205)
T KOG0084|consen 109 RYAS-ENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRKGLH 178 (205)
T ss_pred hhcc-CCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHhcccC
Confidence 9875 67899999999999999999999999999999999 999999999999999999999998777543
No 2
>KOG0078|consensus
Probab=100.00 E-value=2.3e-36 Score=204.66 Aligned_cols=149 Identities=34% Similarity=0.543 Sum_probs=140.2
Q ss_pred cccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
+.++.|...|..|+|-.| .+++..+|.++++|+|||+|+++|+.+...|+++|+++++|||+++..||+++..|+..|.
T Consensus 32 f~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~ 111 (207)
T KOG0078|consen 32 FSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNID 111 (207)
T ss_pred hhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHH
Confidence 468899999999999666 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccccCC
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQCK 151 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~ 151 (159)
+... .++|.++||||+|+.+.+.++.+.+..+|.++|++++|+||++|.||+++|-.+.+.+..+.+..+
T Consensus 112 e~a~-~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~~~ 181 (207)
T KOG0078|consen 112 EHAS-DDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQKLEDAE 181 (207)
T ss_pred hhCC-CCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHhhcchhh
Confidence 9875 589999999999999999999999999999999999999999999999999999999997665543
No 3
>KOG0092|consensus
Probab=100.00 E-value=1.4e-36 Score=202.43 Aligned_cols=149 Identities=30% Similarity=0.488 Sum_probs=139.2
Q ss_pred cccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
|+.+.|.+...||||..| .+.+.+++..+++.||||+|+++|.++.+.|+++|+++|+|||+++.+||..++.|++.+.
T Consensus 25 fvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~ 104 (200)
T KOG0092|consen 25 FVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQ 104 (200)
T ss_pred hhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHH
Confidence 567899999999999777 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccccCC
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQCK 151 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~ 151 (159)
+... +++-+.+||||+|+.+.++++.+++..+|+..|+.|+|+||++|.|++++|..|.+.+........
T Consensus 105 ~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~~~ 174 (200)
T KOG0092|consen 105 RQAS-PNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQER 174 (200)
T ss_pred hhCC-CCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCcccccc
Confidence 8775 677777899999999999999999999999999999999999999999999999999987776544
No 4
>KOG0094|consensus
Probab=100.00 E-value=3.7e-36 Score=200.81 Aligned_cols=146 Identities=34% Similarity=0.521 Sum_probs=137.3
Q ss_pred cccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
|+.+.|..+|++|||..| ++++.+.|.++.+|+|||+|||||+++.+.|++++.++|+|||+++..||++...|+..+.
T Consensus 42 f~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~ 121 (221)
T KOG0094|consen 42 FMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVR 121 (221)
T ss_pred HHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHH
Confidence 467899999999999666 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
+..+..++-+++||||.||.++++++.+++...|++++..|+++||+.|.||.++|..|...+....
T Consensus 122 ~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 122 RERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGME 188 (221)
T ss_pred hccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCcc
Confidence 9987667788899999999999999999999999999999999999999999999999888776553
No 5
>KOG0098|consensus
Probab=100.00 E-value=1.6e-35 Score=196.35 Aligned_cols=146 Identities=29% Similarity=0.496 Sum_probs=138.4
Q ss_pred cccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
|+++.|.+.+..|+|..| .+.++++++++++++|||+|+++|++...+|+++|-|+|+|||++..+||.++..|+..+.
T Consensus 26 f~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~r 105 (216)
T KOG0098|consen 26 FTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDAR 105 (216)
T ss_pred HhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHH
Confidence 578899999999999888 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
++.. ++..++++|||+|+...+.++.+++..||+++|+.+.++||+++.|+++.|......+++...
T Consensus 106 q~~~-~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~~~q 172 (216)
T KOG0098|consen 106 QHSN-ENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYRKIQ 172 (216)
T ss_pred HhcC-CCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9853 788999999999999999999999999999999999999999999999999999999987653
No 6
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=6.9e-34 Score=196.01 Aligned_cols=148 Identities=28% Similarity=0.489 Sum_probs=134.7
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
.++.|.+.|.||++..+ ...+.+++..+.+++||++|+++|..+++.+++++|++|+|||+++++||+.+..|++++.+
T Consensus 27 ~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~ 106 (189)
T cd04121 27 QDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDE 106 (189)
T ss_pred HcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 45788889999998666 67788899999999999999999999999999999999999999999999999999999977
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccccCCC
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQCKN 152 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~ 152 (159)
.. ++.|+++||||.|+.+.+.++.+++..+++..++++++|||++|.||+++|+++++.+..+++....
T Consensus 107 ~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~~~~~~~~ 175 (189)
T cd04121 107 HA--PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMRHGRPPQ 175 (189)
T ss_pred hC--CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCCCCC
Confidence 64 5799999999999988888999999999999999999999999999999999999988877655443
No 7
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.4e-33 Score=196.20 Aligned_cols=145 Identities=30% Similarity=0.523 Sum_probs=131.4
Q ss_pred cccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
++++.|.++|.||++..+ .+.+.+++..+++++|||+|+++|.+++..|++++|++|+|||+++++||+.+..|+..+.
T Consensus 20 ~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~ 99 (202)
T cd04120 20 FTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMID 99 (202)
T ss_pred HHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 457889999999999665 7788999999999999999999999999999999999999999999999999999999887
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQL-RIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
+.. ..+.|+++||||+|+.+.+.++.+++.++++++ ++.+++|||++|.||+++|+++++.+....
T Consensus 100 ~~~-~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~~ 166 (202)
T cd04120 100 KYA-SEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 166 (202)
T ss_pred HhC-CCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhC
Confidence 654 357999999999999888889999999999886 789999999999999999999999887643
No 8
>KOG0079|consensus
Probab=100.00 E-value=5.4e-34 Score=182.70 Aligned_cols=143 Identities=33% Similarity=0.495 Sum_probs=135.8
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
-++.|.++|..|+|..| .+++.++|..++++|||++|+++|+.+...|+++.+++++|||+++.+||.++.+|++++..
T Consensus 29 ~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ 108 (198)
T KOG0079|consen 29 ADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRN 108 (198)
T ss_pred hhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHh
Confidence 35689999999999776 89999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.+ +.+|-++||||.|.++.+.+..++++.||.+.|+.+||+||+.+.|++..|..|.+++.+.+
T Consensus 109 nc--dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 109 NC--DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred cC--ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHHH
Confidence 76 67999999999999999999999999999999999999999999999999999999988766
No 9
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=3.3e-33 Score=191.72 Aligned_cols=141 Identities=28% Similarity=0.443 Sum_probs=128.4
Q ss_pred cccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHH-HHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEI-YKFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~-~~~~~~i~ 80 (159)
++.+.|.++|.||+++.+.+.+.+++..+.+++|||+|+++|..+++.+++++|++++|||+++++||+.+ ..|++.+.
T Consensus 25 ~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~ 104 (182)
T cd04172 25 FAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ 104 (182)
T ss_pred HHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 45788999999999988888889999999999999999999999999999999999999999999999997 79999998
Q ss_pred hhcCCCCCcEEEEEeCCCCCC------------cCCCCHHHHHHHHHHcCC-cEEEeCCCCCCC-HHHHHHHHHHHHH
Q psy11289 81 RVKDRDEFPMLMVGNKADLDH------------QRQVSSMDAQNVARQLRI-PYIECSAKVRIN-VDQAFHELVRIVL 144 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~-i~~~~~~l~~~~~ 144 (159)
+.. ++.|+++||||+|+.+ .+.++.+++.++|+++++ +|+||||++|.| |+++|+.+++.++
T Consensus 105 ~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 105 EFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred HHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence 865 5789999999999854 356899999999999995 899999999998 9999999998654
No 10
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=6.1e-33 Score=196.23 Aligned_cols=146 Identities=22% Similarity=0.373 Sum_probs=131.3
Q ss_pred cccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHH-HHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEI-YKFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~-~~~~~~i~ 80 (159)
++.+.|.++|.||++..+...+.+++..+.++||||+|+++|..+++.+++++|++++|||+++++||+.+ ..|+..+.
T Consensus 33 ~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~ 112 (232)
T cd04174 33 LAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIM 112 (232)
T ss_pred HhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHH
Confidence 45778999999999988877888999999999999999999999999999999999999999999999985 79999998
Q ss_pred hhcCCCCCcEEEEEeCCCCCC------------cCCCCHHHHHHHHHHcCC-cEEEeCCCCCC-CHHHHHHHHHHHHHhc
Q psy11289 81 RVKDRDEFPMLMVGNKADLDH------------QRQVSSMDAQNVARQLRI-PYIECSAKVRI-NVDQAFHELVRIVLLH 146 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~-~i~~~~~~l~~~~~~~ 146 (159)
... ++.|+++||||+|+.+ .+.++.+++.++|+++++ +|+||||++|. ||+++|..++..+.+.
T Consensus 113 ~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 113 DYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred HhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 765 5789999999999864 367899999999999998 59999999997 8999999999998875
Q ss_pred ccc
Q psy11289 147 TKQ 149 (159)
Q Consensus 147 ~~~ 149 (159)
..+
T Consensus 191 ~~~ 193 (232)
T cd04174 191 LSP 193 (232)
T ss_pred ccc
Confidence 433
No 11
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=2.6e-33 Score=191.24 Aligned_cols=141 Identities=30% Similarity=0.593 Sum_probs=128.0
Q ss_pred cccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHH-HHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEI-YKFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~-~~~~~~i~ 80 (159)
++.+.|..+|.||+++.+.+.+.+++..+++++|||+|+++|..+++.++++++++|+|||+++++||+.+ ..|+..+.
T Consensus 21 ~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~ 100 (176)
T cd04133 21 YTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELR 100 (176)
T ss_pred HhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 46788999999999988877788899999999999999999999999999999999999999999999998 68999987
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcC----------CCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQR----------QVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
+.. ++.|+++||||+|+.+.+ .++.+++.++++..++ +++||||++|.||+++|+.+++.+.
T Consensus 101 ~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 101 HYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred HhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHHh
Confidence 765 579999999999996543 4889999999999998 5999999999999999999999764
No 12
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=5.6e-33 Score=192.08 Aligned_cols=145 Identities=32% Similarity=0.551 Sum_probs=129.1
Q ss_pred cccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH-HHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY-KFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~ 80 (159)
++.+.|.++|.||+++.+.+.+.+++..+.+++|||+|+++|..+++.+++++|++|+|||+++++||+.+. .|+..+.
T Consensus 23 ~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~ 102 (191)
T cd01875 23 YTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVC 102 (191)
T ss_pred HHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 456889999999999888777788999999999999999999999999999999999999999999999997 6888777
Q ss_pred hhcCCCCCcEEEEEeCCCCCCc------------CCCCHHHHHHHHHHcC-CcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQ------------RQVSSMDAQNVARQLR-IPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
... +++|+++||||.|+.+. +.++.+++..+++.++ +++++|||++|.|++++|+++++.+....
T Consensus 103 ~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~~~ 180 (191)
T cd01875 103 HHC--PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPT 180 (191)
T ss_pred hhC--CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhccc
Confidence 654 57999999999999654 2467788999999998 58999999999999999999999998765
Q ss_pred c
Q psy11289 148 K 148 (159)
Q Consensus 148 ~ 148 (159)
.
T Consensus 181 ~ 181 (191)
T cd01875 181 P 181 (191)
T ss_pred c
Confidence 3
No 13
>KOG0080|consensus
Probab=100.00 E-value=9.6e-34 Score=183.84 Aligned_cols=146 Identities=32% Similarity=0.485 Sum_probs=137.7
Q ss_pred cccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
|+++.|.+..+.|||..| .+.+.++|..+++-||||+|+++|+.+.++|+++|-++|+|||++.+++|..+..|++++.
T Consensus 31 Fv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld 110 (209)
T KOG0080|consen 31 FVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELD 110 (209)
T ss_pred HHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHH
Confidence 456788888888899887 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.+...+++-.++||||+|...++.++.+++..||+++++.++||||++.+|+...|+.++..|++-.
T Consensus 111 ~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 111 LYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIETP 177 (209)
T ss_pred hhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcCc
Confidence 9998888889999999998878999999999999999999999999999999999999999998644
No 14
>PTZ00099 rab6; Provisional
Probab=100.00 E-value=2.1e-32 Score=186.74 Aligned_cols=143 Identities=29% Similarity=0.481 Sum_probs=129.8
Q ss_pred cccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 4 ESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
.+.|.++|.||+|..+ .+.+.+++..++++||||+|++++..++..+++++|++|+|||+++++||+.+..|+..+...
T Consensus 2 ~~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~ 81 (176)
T PTZ00099 2 YDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE 81 (176)
T ss_pred CCCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 4689999999999665 777889999999999999999999999999999999999999999999999999999998776
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.. .++|+++||||+|+.+.+.++.+++..+++.+++.++++||++|.|++++|+++++.+.+..
T Consensus 82 ~~-~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 82 RG-KDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred cC-CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 43 57899999999999877778888999999999999999999999999999999999886533
No 15
>KOG0091|consensus
Probab=100.00 E-value=1.4e-33 Score=183.57 Aligned_cols=148 Identities=31% Similarity=0.510 Sum_probs=134.4
Q ss_pred cccccccccccccccce-EEEEEEE-CCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDS-YTKQCVI-DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQI 79 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~-~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i 79 (159)
+.+|.|.+--.||+|.. |.+.+.. .|..+++|+|||+|+++|++...+|++++-|+++|||+++.+||+++..|+.+.
T Consensus 28 ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea 107 (213)
T KOG0091|consen 28 FTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEA 107 (213)
T ss_pred HhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHH
Confidence 46889999999999955 4777777 689999999999999999999999999999999999999999999999999998
Q ss_pred HhhcCCCCCcE-EEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcccc
Q psy11289 80 LRVKDRDEFPM-LMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQ 149 (159)
Q Consensus 80 ~~~~~~~~~p~-ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 149 (159)
..+...+..++ .+||+|+|+...++++.+++..+|+.+|+.++|+||++|.|+++.|.-+.+.+.....+
T Consensus 108 ~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 108 AMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQAIQQ 178 (213)
T ss_pred HHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHHHHhc
Confidence 88876565554 57999999999999999999999999999999999999999999999999988876654
No 16
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=2.3e-32 Score=186.11 Aligned_cols=148 Identities=50% Similarity=0.808 Sum_probs=133.8
Q ss_pred cccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 2 KIESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
++.+.|.+.+.||+++.+...+.+++..+.+++||++|++++..+++.+++++|++++|||+++++||+.+..|+..+.+
T Consensus 22 ~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~ 101 (172)
T cd04141 22 FISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITR 101 (172)
T ss_pred HHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHH
Confidence 35678989999999988877888999999999999999999999999999999999999999999999999999888877
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcccc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQ 149 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 149 (159)
.....++|+++||||+|+.+.+.++.+++..+++.+++++++|||++|.||+++|+++++.+.+...+
T Consensus 102 ~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~ 169 (172)
T cd04141 102 VRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRRKESM 169 (172)
T ss_pred hcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHHHhccC
Confidence 64446799999999999987788999999999999999999999999999999999999988865443
No 17
>KOG0087|consensus
Probab=100.00 E-value=2.4e-33 Score=189.49 Aligned_cols=147 Identities=29% Similarity=0.483 Sum_probs=137.4
Q ss_pred cccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
+..+.|..+-.+|||..| ...+.++++.++.|||||+||+||+.....|+++|.|+++|||++...+|+++.+|+.++.
T Consensus 34 ftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELR 113 (222)
T KOG0087|consen 34 FTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELR 113 (222)
T ss_pred hcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHH
Confidence 456788889999999776 8899999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcccc
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQ 149 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 149 (159)
...+ +++++++||||+||.+.+.++.++++.+|+..++.++++||+++.|+.++|+.++..|.....+
T Consensus 114 dhad-~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~ 181 (222)
T KOG0087|consen 114 DHAD-SNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYKIVSK 181 (222)
T ss_pred hcCC-CCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHHHHHH
Confidence 8865 6899999999999999999999999999999999999999999999999999999988865533
No 18
>KOG0093|consensus
Probab=100.00 E-value=4.4e-33 Score=178.32 Aligned_cols=146 Identities=32% Similarity=0.513 Sum_probs=134.8
Q ss_pred cccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
|.++.|...|-.|.|..| .+++--+.+.+++|+|||.|+++|+.+...++++++|+|++||+++.+||..++.|.-+|.
T Consensus 41 y~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIk 120 (193)
T KOG0093|consen 41 YADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIK 120 (193)
T ss_pred hhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHhe
Confidence 467889999999999777 5655557788999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
.+.. .+.|+|++|||||+..++.++.+.++++++++|+.++|+||+.+.|+.++|+.++..+-+.+.
T Consensus 121 tysw-~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 121 TYSW-DNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVDIICDKMS 187 (193)
T ss_pred eeec-cCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHHHHHHHhh
Confidence 9875 689999999999999999999999999999999999999999999999999999998876553
No 19
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.4e-32 Score=188.12 Aligned_cols=141 Identities=26% Similarity=0.419 Sum_probs=127.6
Q ss_pred cccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHH-HHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEI-YKFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~-~~~~~~i~ 80 (159)
++.+.|.++|.||+++.+.+.+.+++..+.+++|||+|+++|..+++.+++++|++|+|||+++++||+++ ..|+..+.
T Consensus 21 ~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~ 100 (178)
T cd04131 21 FAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQ 100 (178)
T ss_pred HHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHH
Confidence 35678999999999988888889999999999999999999999999999999999999999999999996 79999998
Q ss_pred hhcCCCCCcEEEEEeCCCCCC------------cCCCCHHHHHHHHHHcCC-cEEEeCCCCCCC-HHHHHHHHHHHHH
Q psy11289 81 RVKDRDEFPMLMVGNKADLDH------------QRQVSSMDAQNVARQLRI-PYIECSAKVRIN-VDQAFHELVRIVL 144 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~-i~~~~~~l~~~~~ 144 (159)
+.. ++.|+++||||+|+.+ .+.++.+++.++|+++++ +++||||++|.| |+++|..++++.+
T Consensus 101 ~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 101 EFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred HHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 875 5789999999999854 346889999999999997 799999999995 9999999999654
No 20
>KOG0394|consensus
Probab=100.00 E-value=3.6e-33 Score=184.85 Aligned_cols=147 Identities=36% Similarity=0.601 Sum_probs=134.3
Q ss_pred cccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
|+.+.|...|..|||..| .+.+.++++.+++|+|||+|++||+++...+++++|.+++|||++++.||+.+..|.++++
T Consensus 29 yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl 108 (210)
T KOG0394|consen 29 YVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFL 108 (210)
T ss_pred HHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHH
Confidence 456789999999999666 9999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcCC---CCCcEEEEEeCCCCCC--cCCCCHHHHHHHHHHcC-CcEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 81 RVKDR---DEFPMLMVGNKADLDH--QRQVSSMDAQNVARQLR-IPYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 81 ~~~~~---~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
..... ...|.|++|||.|+.+ .+.++...++++|+..| +||+|+||+.+.||+++|+.+.+.++....
T Consensus 109 ~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 109 IQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred HhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhccc
Confidence 87752 2579999999999965 38899999999999887 999999999999999999999998886653
No 21
>KOG0081|consensus
Probab=100.00 E-value=1.4e-32 Score=178.25 Aligned_cols=149 Identities=32% Similarity=0.513 Sum_probs=136.8
Q ss_pred cccccccccccccccceE-EEEEEEC---------CeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHH
Q psy11289 2 KIESYFVTDYDPTIEDSY-TKQCVID---------DIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEE 71 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~-~~~~~~~---------~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~ 71 (159)
|.++.|.+.+..|+|-.| .+.+..+ +..+++|+|||+|+++|+++...++++|.+++++||++++.||.+
T Consensus 29 YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLn 108 (219)
T KOG0081|consen 29 YTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLN 108 (219)
T ss_pred ecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHH
Confidence 678999999999999776 6666552 257899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccccC
Q psy11289 72 IYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQC 150 (159)
Q Consensus 72 ~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~ 150 (159)
+..|+.++.......+.-+|++|||+|+.+.+.++.+++.++|.++|+||+|+||-+|.|+.+..+-++..++++..+.
T Consensus 109 vrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~LldlvM~Rie~~ 187 (219)
T KOG0081|consen 109 VRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELLLDLVMKRIEQC 187 (219)
T ss_pred HHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHHHHHHHHHH
Confidence 9999999988877777889999999999999999999999999999999999999999999999999999999887654
No 22
>KOG0083|consensus
Probab=100.00 E-value=1.2e-32 Score=173.87 Aligned_cols=144 Identities=29% Similarity=0.524 Sum_probs=133.0
Q ss_pred ccccc-cccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 3 IESYF-VTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 3 ~~~~f-~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
.+|.| ..++.+|+|-.| .+.+..+++++++|+|||+|+++|++....|++++|+++++||+.+..||++++.|+.+|.
T Consensus 18 kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ 97 (192)
T KOG0083|consen 18 KDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIH 97 (192)
T ss_pred ccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHH
Confidence 45666 567899999777 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
++.. ..+.+.++|||+|+..++.+..+++..+++.+++|+.|+||++|.|++-.|-.+.+.+.+..
T Consensus 98 ey~k-~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k~~ 163 (192)
T KOG0083|consen 98 EYAK-EAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKKLK 163 (192)
T ss_pred HHHH-hhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHHhc
Confidence 9875 56788999999999998999999999999999999999999999999999999999887654
No 23
>KOG0086|consensus
Probab=100.00 E-value=5.9e-32 Score=174.38 Aligned_cols=146 Identities=30% Similarity=0.495 Sum_probs=135.8
Q ss_pred cccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
+++..|..+-..|+|..| ++.+.++++.+++|+|||+|+++|++..+.|+++|.+.++|||+++.+||+.+..|+..+.
T Consensus 29 Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR 108 (214)
T KOG0086|consen 29 FIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDAR 108 (214)
T ss_pred HHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHH
Confidence 467889999999999888 8999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
.... +++-++++|||.|+.+.++++..++..||++..+-++|+||++|.|+++.|-...+.++.+.+
T Consensus 109 ~lAs-~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~kIE 175 (214)
T KOG0086|consen 109 TLAS-PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIE 175 (214)
T ss_pred hhCC-CcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHHHHHHHh
Confidence 7654 688899999999999999999999999999999999999999999999999988888776553
No 24
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=2.8e-31 Score=181.28 Aligned_cols=140 Identities=30% Similarity=0.546 Sum_probs=124.8
Q ss_pred cccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH-HHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY-KFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~ 80 (159)
++.+.|.++|.||+++.+...+.+++..+.+++||++|+++|..++..+++++|++|+|||+++++||+.+. .|+..+.
T Consensus 21 ~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~ 100 (175)
T cd01874 21 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 100 (175)
T ss_pred HHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 456889999999999888777888999999999999999999999999999999999999999999999997 5988887
Q ss_pred hhcCCCCCcEEEEEeCCCCCCc------------CCCCHHHHHHHHHHcC-CcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQ------------RQVSSMDAQNVARQLR-IPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
... +++|+++||||+|+.+. +.++.+++.+++++.+ +.+++|||++|.|++++|+.++.+.
T Consensus 101 ~~~--~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 101 HHC--PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred HhC--CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 654 57899999999998543 5678888999999887 6899999999999999999999864
No 25
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=6.1e-31 Score=181.63 Aligned_cols=148 Identities=61% Similarity=0.959 Sum_probs=134.2
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+++.|...+.||++..+.+.+.+++..+.+++|||+|+++|..++..+++++|++++|||++++++|+.+..|+..+.+.
T Consensus 26 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~ 105 (189)
T PTZ00369 26 IQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRV 105 (189)
T ss_pred hcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 46788889999999888888899999999999999999999999999999999999999999999999999999998877
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccccC
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQC 150 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~ 150 (159)
....+.|+++|+||+|+.+.+.++..++..+++.++++++++||++|.|+.++|+++++.+.+..++.
T Consensus 106 ~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~~~~~ 173 (189)
T PTZ00369 106 KDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLKED 173 (189)
T ss_pred cCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 55568899999999999777778888888899888999999999999999999999999888775544
No 26
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=8.2e-31 Score=181.12 Aligned_cols=148 Identities=48% Similarity=0.798 Sum_probs=133.0
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+.+.|.+++.||+++.+...+.+++..+.+++|||+|+++|..++..+++++|++|+|||+++++||+.+..|+..+...
T Consensus 20 ~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~ 99 (190)
T cd04144 20 CLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRV 99 (190)
T ss_pred HhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 46789999999999888777888999999999999999999999999999999999999999999999999999988776
Q ss_pred cC--CCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccccC
Q psy11289 83 KD--RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQC 150 (159)
Q Consensus 83 ~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~ 150 (159)
.. ..+.|+++||||+|+.+.+.++..++..+++.++++++++||++|.|++++|+++++.+.++....
T Consensus 100 ~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~~~ 169 (190)
T cd04144 100 KDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGG 169 (190)
T ss_pred hcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHhhccc
Confidence 43 257899999999999877888888888999999999999999999999999999999888666554
No 27
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=8.8e-31 Score=177.21 Aligned_cols=142 Identities=31% Similarity=0.529 Sum_probs=129.1
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|.++++||++..+ .+.+.+++..+++++||+||++++..++..+++++|++++|||+++++||+.+..|+..+..
T Consensus 23 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~ 102 (166)
T cd04122 23 TEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN 102 (166)
T ss_pred hcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 46789999999999776 67788899999999999999999999999999999999999999999999999999998876
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
... ++.|+++||||+|+.+.+.++.+++..+++..++++++|||++|.|+.++|.+++..+.+
T Consensus 103 ~~~-~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 103 LTN-PNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred hCC-CCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 543 578999999999998888888899999999999999999999999999999999988754
No 28
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.98 E-value=1.8e-30 Score=175.28 Aligned_cols=142 Identities=49% Similarity=0.846 Sum_probs=129.5
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+.+.|.+++.||+++.+.+.+.+++..+.+++|||+|++++.+++..+++++|++++|||++++++|+.+..|+..+...
T Consensus 22 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~ 101 (164)
T cd04175 22 VQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRV 101 (164)
T ss_pred HhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 46788899999999888888888999999999999999999999999999999999999999999999999999999876
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
....+.|+++|+||+|+.+...++.+++..+++.++++++++||++|.|++++|.++++.+.
T Consensus 102 ~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 102 KDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred cCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence 55568999999999999877777777888899889999999999999999999999998663
No 29
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.98 E-value=1.5e-30 Score=175.20 Aligned_cols=141 Identities=50% Similarity=0.865 Sum_probs=128.3
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+.+.|.+++.||+++.+.+.+.+++..+.+++|||+|+++|..+++.+++++|++++|||++++++++.+..|+..+...
T Consensus 22 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~ 101 (163)
T cd04136 22 VQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRV 101 (163)
T ss_pred HhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 46788899999999888888889999999999999999999999999999999999999999999999999999999887
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
....++|+++|+||+|+.+.+.++.+++..+++.++++++++||++|.|+.++|+++++.+
T Consensus 102 ~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 102 KDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred cCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 5556789999999999977777778888888888889999999999999999999998764
No 30
>KOG0088|consensus
Probab=99.98 E-value=1.4e-32 Score=178.20 Aligned_cols=145 Identities=34% Similarity=0.560 Sum_probs=135.5
Q ss_pred cccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
|+++.|......|+..+| .+.+.+++....+.||||+|+++|..+.+.|+++++++++|||++|++||+.++.|..++.
T Consensus 33 y~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr 112 (218)
T KOG0088|consen 33 YVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELR 112 (218)
T ss_pred HHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHH
Confidence 678999999999999777 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
...+ ..+.+++||||+|+.+++.++.+++..+|+.-|..++++||+++.||.++|+.+.....+..
T Consensus 113 ~mlG-nei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 113 TMLG-NEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAKMIEHS 178 (218)
T ss_pred HHhC-CeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHHHHHHh
Confidence 8765 46889999999999999999999999999999999999999999999999999987766554
No 31
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.97 E-value=2.4e-30 Score=182.13 Aligned_cols=145 Identities=21% Similarity=0.372 Sum_probs=127.7
Q ss_pred cccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH-HHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY-KFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~ 80 (159)
++.+.|+++|.||+++.+...+.+++..+.++||||+|++.|..+++.+++++|++|+|||+++++||+.+. .|...+.
T Consensus 21 ~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~ 100 (222)
T cd04173 21 FAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQ 100 (222)
T ss_pred HHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 456789999999999888888899999999999999999999999999999999999999999999999995 6777665
Q ss_pred hhcCCCCCcEEEEEeCCCCCCc------------CCCCHHHHHHHHHHcCC-cEEEeCCCCCCC-HHHHHHHHHHHHHhc
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQ------------RQVSSMDAQNVARQLRI-PYIECSAKVRIN-VDQAFHELVRIVLLH 146 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~-i~~~~~~l~~~~~~~ 146 (159)
... ++.|+++||||+|+.+. ..++.+++..++++.|+ +|+||||+++.| |.++|+.++.+.+.+
T Consensus 101 ~~~--~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 101 EFC--PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGR 178 (222)
T ss_pred hhC--CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhc
Confidence 543 67999999999998542 24788899999999995 899999999885 999999999988765
Q ss_pred cc
Q psy11289 147 TK 148 (159)
Q Consensus 147 ~~ 148 (159)
..
T Consensus 179 ~~ 180 (222)
T cd04173 179 GH 180 (222)
T ss_pred cC
Confidence 43
No 32
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.97 E-value=2.6e-30 Score=179.57 Aligned_cols=141 Identities=28% Similarity=0.511 Sum_probs=124.9
Q ss_pred cccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
++.+.|.+.|.||+|..+ .+.+.+++..++++||||+|+++|..+++.++++++++|+|||+++++||+.+..|+..+.
T Consensus 15 ~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~ 94 (200)
T smart00176 15 HLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLV 94 (200)
T ss_pred HhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHH
Confidence 356789899999999655 7778889999999999999999999999999999999999999999999999999999998
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
+.. .++|+++||||+|+.. +.+..+. ..+++..++++++|||++|.||.++|++++..+.+.
T Consensus 95 ~~~--~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 95 RVC--ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HhC--CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 865 5799999999999864 4455544 478888899999999999999999999999988764
No 33
>KOG0095|consensus
Probab=99.97 E-value=2.7e-31 Score=170.72 Aligned_cols=145 Identities=26% Similarity=0.435 Sum_probs=133.7
Q ss_pred cccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
+.+|-|++....|+|..| .+++.++|+++++++|||+|+++|++...+|++.|+++|+|||++-..||+-++.|+.+|.
T Consensus 27 ftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie 106 (213)
T KOG0095|consen 27 FTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIE 106 (213)
T ss_pred hhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHH
Confidence 457889999999999776 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
++.. ..+--|+||||.|+.+.++++.+.+.+|++....-++|+||+..+|++.+|..+...+....
T Consensus 107 ~yan-~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rli~~a 172 (213)
T KOG0095|consen 107 QYAN-NKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRLISEA 172 (213)
T ss_pred HHhh-cceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHHHHHH
Confidence 9975 45677899999999999999999999999998888999999999999999999887766443
No 34
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.97 E-value=7.4e-30 Score=174.67 Aligned_cols=144 Identities=32% Similarity=0.532 Sum_probs=127.6
Q ss_pred ccccccccccccccceE-EEEEEEC----------CeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHH
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVID----------DIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEE 71 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~----------~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~ 71 (159)
..+.|.+.+.||++..+ ...+..+ +..+.++|||++|++++..++..+++++|++++|||+++++||.+
T Consensus 25 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~ 104 (180)
T cd04127 25 TDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLN 104 (180)
T ss_pred hcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHH
Confidence 46788999999999665 5555554 457889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 72 IYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 72 ~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
+..|+..+.......+.|+++||||+|+.+.+.++.+++.++++.++++++++||++|.|++++|+++++.+.++
T Consensus 105 ~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 105 VRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 999999988765446789999999999988788888899999999999999999999999999999999887653
No 35
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.97 E-value=6.8e-30 Score=172.21 Aligned_cols=142 Identities=41% Similarity=0.783 Sum_probs=127.9
Q ss_pred cccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 2 KIESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
++.+.|.+.+.||+++.+...+.+++..+.++|||++|+++|..+++.+++++|++++|||+++++||+++..|+..+.+
T Consensus 21 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~ 100 (163)
T cd04176 21 FVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVR 100 (163)
T ss_pred HHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 35678889999999877788888899999999999999999999999999999999999999999999999999999888
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
.....++|+++|+||+|+.+...+...++..+++..+++++++||++|.|+.++|.++++.+
T Consensus 101 ~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 101 VKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred hcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 65446799999999999977677777788888888899999999999999999999998754
No 36
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=4.6e-30 Score=177.27 Aligned_cols=152 Identities=30% Similarity=0.498 Sum_probs=131.2
Q ss_pred cccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH-HHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY-KFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~ 80 (159)
+..+.|.+.|.||+++.+...+.+++..+.+++||++|+++|..+++.+++++|++++|||+++++||+.+. .|+..+.
T Consensus 20 ~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~ 99 (189)
T cd04134 20 FTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIR 99 (189)
T ss_pred HhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 346788889999999888777788898899999999999999999999999999999999999999999987 6998887
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcC------------CCCHHHHHHHHHHcC-CcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQR------------QVSSMDAQNVARQLR-IPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
... .+.|+++||||+|+.+.+ .++.+++..+++..+ +++++|||++|.|++++|+++++.+....
T Consensus 100 ~~~--~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 100 EHC--PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALNVR 177 (189)
T ss_pred HhC--CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhccc
Confidence 654 578999999999986543 356777888888877 78999999999999999999999998777
Q ss_pred ccCCCCcc
Q psy11289 148 KQCKNSTV 155 (159)
Q Consensus 148 ~~~~~~~~ 155 (159)
+..+.++.
T Consensus 178 ~~~~~~~~ 185 (189)
T cd04134 178 PPHPHSSA 185 (189)
T ss_pred ccCcCCCc
Confidence 66555543
No 37
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=1.1e-29 Score=170.95 Aligned_cols=142 Identities=43% Similarity=0.751 Sum_probs=132.0
Q ss_pred ccccccccccccccc-ceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIE-DSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
++++.|.+++.||++ +.+.+.+.+++..+.+++||++|+++|..+...+++++|++|+|||+++++||+.+..|+..+.
T Consensus 19 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~ 98 (162)
T PF00071_consen 19 LINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQ 98 (162)
T ss_dssp HHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHH
T ss_pred HHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 356789999999997 5558999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
.... .+.|++++|||.|+.+.+.++.+++..+++++++++++|||+++.|+.++|..+++.+.
T Consensus 99 ~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 99 KYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp HHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred cccc-ccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 8874 46899999999999888999999999999999999999999999999999999999875
No 38
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=8e-30 Score=177.63 Aligned_cols=146 Identities=29% Similarity=0.465 Sum_probs=129.5
Q ss_pred cccccccccccccccceE-EEEEEEC-CeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSY-TKQCVID-DIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQI 79 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~-~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i 79 (159)
++.+.|.+.+.||++..+ .+.+.++ +..+.+++||++|+++|..+++.++++++++++|||+++++||+.+..|+..+
T Consensus 20 l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i 99 (201)
T cd04107 20 YVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADL 99 (201)
T ss_pred HHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 356788899999999665 6777887 88999999999999999999999999999999999999999999999999888
Q ss_pred HhhcC---CCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcC-CcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 80 LRVKD---RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLR-IPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 80 ~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
..... ..++|+++||||+|+.+.+.++.+++.++++..+ .+++++||++|.|++++|+++++.+.+..
T Consensus 100 ~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~ 171 (201)
T cd04107 100 DSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILAND 171 (201)
T ss_pred HHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 76432 2578999999999998667788889999999999 68999999999999999999999987654
No 39
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.97 E-value=1e-29 Score=171.32 Aligned_cols=139 Identities=27% Similarity=0.516 Sum_probs=126.8
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|.+.+.||++..+ .+.+.+++..+.+++||++|++++..+++.+++++|++++|||+++++||+.+..|+..+..
T Consensus 21 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~ 100 (161)
T cd04117 21 TDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDE 100 (161)
T ss_pred hcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 46789899999999665 67888899999999999999999999999999999999999999999999999999999877
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
... .+.|+++||||.|+.+.+.++.+++..+++.++++++++||++|.|++++|+++++.
T Consensus 101 ~~~-~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 101 YAP-EGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred hCC-CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 642 468999999999998888888999999999999999999999999999999999864
No 40
>KOG0395|consensus
Probab=99.97 E-value=1.2e-29 Score=175.20 Aligned_cols=146 Identities=55% Similarity=0.861 Sum_probs=138.2
Q ss_pred cccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 2 KIESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
++.+.|.+.|.||+++.|.+.+.+++..+.+.|+||+|++.|..+...++++++|+++||+++++.||+.+..++.+|.+
T Consensus 23 f~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r 102 (196)
T KOG0395|consen 23 FLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILR 102 (196)
T ss_pred ecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
......+|+++||||+|+...+.++.+++..++..++++++|+||+.+.+++++|..+++++-..+
T Consensus 103 ~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~~~ 168 (196)
T KOG0395|consen 103 VKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREIRLPR 168 (196)
T ss_pred hhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHhhh
Confidence 766677899999999999999999999999999999999999999999999999999999887733
No 41
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=3.8e-30 Score=178.29 Aligned_cols=135 Identities=26% Similarity=0.403 Sum_probs=115.7
Q ss_pred ccccccccccccc--ceEEEE--------EEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH
Q psy11289 4 ESYFVTDYDPTIE--DSYTKQ--------CVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY 73 (159)
Q Consensus 4 ~~~f~~~~~pt~~--~~~~~~--------~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~ 73 (159)
++.|.++|.||++ +.+... +.++|..++++||||+|+++ .+...+++++|++++|||+++++||+++.
T Consensus 30 ~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~ 107 (195)
T cd01873 30 QYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVK 107 (195)
T ss_pred cccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHH
Confidence 4567888999996 444332 26789999999999999975 34567899999999999999999999997
Q ss_pred -HHHHHHHhhcCCCCCcEEEEEeCCCCCC-------------------cCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHH
Q psy11289 74 -KFHRQILRVKDRDEFPMLMVGNKADLDH-------------------QRQVSSMDAQNVARQLRIPYIECSAKVRINVD 133 (159)
Q Consensus 74 -~~~~~i~~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 133 (159)
.|+..+.... ++.|+++||||+|+.+ .+.++.+++..+|+++|++|+||||++|.||+
T Consensus 108 ~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~ 185 (195)
T cd01873 108 TMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVK 185 (195)
T ss_pred HHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHH
Confidence 5998887764 5789999999999864 47889999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy11289 134 QAFHELVRI 142 (159)
Q Consensus 134 ~~~~~l~~~ 142 (159)
++|+.++++
T Consensus 186 e~F~~~~~~ 194 (195)
T cd01873 186 DVFDNAIRA 194 (195)
T ss_pred HHHHHHHHh
Confidence 999999874
No 42
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.97 E-value=5.3e-30 Score=174.80 Aligned_cols=139 Identities=28% Similarity=0.529 Sum_probs=123.7
Q ss_pred cccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH-HHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY-KFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~ 80 (159)
++++.|.++|.||+++.+...+.+++..+.+++|||+|+++|..+++.+++++|++|+|||+++++||+.+. .|+..+.
T Consensus 21 ~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~ 100 (174)
T cd01871 21 YTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 100 (174)
T ss_pred HhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 456889999999999888777888999999999999999999999999999999999999999999999996 6888876
Q ss_pred hhcCCCCCcEEEEEeCCCCCCc------------CCCCHHHHHHHHHHcC-CcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQ------------RQVSSMDAQNVARQLR-IPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
... ++.|+++||||+|+.+. +.++.+++..+++.++ +++++|||++|.|++++|+.+++.
T Consensus 101 ~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 101 HHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred HhC--CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 653 57999999999999542 3588899999999998 489999999999999999999864
No 43
>KOG0097|consensus
Probab=99.97 E-value=2.2e-30 Score=165.39 Aligned_cols=146 Identities=29% Similarity=0.484 Sum_probs=135.8
Q ss_pred cccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
+.++.|..+-+.|+|..| .+.+.+.|.++++++|||+|+++|+...++|++++.+.++|||++.+.++.++..|+....
T Consensus 31 ftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar 110 (215)
T KOG0097|consen 31 FTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR 110 (215)
T ss_pred HHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhh
Confidence 457789999999999888 8899999999999999999999999999999999999999999999999999999998876
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
... .++..++++|||.|+...+.++.+++++|+++.|+.++++||++|.|+++.|-...+.+.+...
T Consensus 111 ~lt-npnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~akkiyqniq 177 (215)
T KOG0097|consen 111 NLT-NPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAKKIYQNIQ 177 (215)
T ss_pred ccC-CCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHHHHHHhhh
Confidence 654 4788899999999999999999999999999999999999999999999999999999887653
No 44
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.97 E-value=1.5e-29 Score=173.66 Aligned_cols=144 Identities=25% Similarity=0.390 Sum_probs=123.2
Q ss_pred cccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
++++.|.++|.||+|..+ .+.+.+++..+.+++||++|+++|..+++.+++++|++++|||+++++||+++..|+..+.
T Consensus 20 ~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~ 99 (182)
T cd04128 20 YVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQAR 99 (182)
T ss_pred HHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 357789999999999665 6788899999999999999999999999999999999999999999999999999999987
Q ss_pred hhcCCCCCcEEEEEeCCCCCC-----cCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 81 RVKDRDEFPMLMVGNKADLDH-----QRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
+... ...| ++||||+|+.. ......+++.++++..++++++|||++|.|++++|+++++.+.+..
T Consensus 100 ~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~~~ 169 (182)
T cd04128 100 GFNK-TAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFDLP 169 (182)
T ss_pred HhCC-CCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcC
Confidence 7643 3456 68899999842 1112245677889889999999999999999999999999887543
No 45
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.97 E-value=2.9e-29 Score=170.57 Aligned_cols=144 Identities=27% Similarity=0.442 Sum_probs=125.7
Q ss_pred cccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
++++.|.+.|.||++..+ .+.+.++|..+.+++||++|+++|..++..+++++|++++|||+++++++..+..|++.+.
T Consensus 20 ~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~ 99 (170)
T cd04108 20 FCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDAL 99 (170)
T ss_pred HhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 356789999999999666 6788889999999999999999999999999999999999999999999999999999987
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCC--CCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQ--VSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
+.......|+++|+||.|+.+... ...+++..++++++.+++++||++|.|++++|+.++..+.+
T Consensus 100 ~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 100 KENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred HhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 754334578999999999865433 34667778888889999999999999999999999988754
No 46
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.97 E-value=3.8e-29 Score=169.40 Aligned_cols=142 Identities=33% Similarity=0.553 Sum_probs=128.6
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
..+.|.+.|.||++..+ ...+..++..+.+++||++|++++..++..+++++|++++|||++++++|..+..|+..+..
T Consensus 24 ~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~ 103 (167)
T cd01867 24 SEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEE 103 (167)
T ss_pred hhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHH
Confidence 45788999999999665 67778899889999999999999999999999999999999999999999999999999987
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
... .+.|+++||||+|+.+.+.+..+++..+++.++++++++||++|.|++++|+++++.+..
T Consensus 104 ~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 104 HAS-EDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred hCC-CCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 643 578999999999998877788888999999999999999999999999999999998864
No 47
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.97 E-value=6.2e-29 Score=168.05 Aligned_cols=141 Identities=35% Similarity=0.584 Sum_probs=127.7
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ .+.+.+++..+.+++||++|++++..++..+++++|++++|||+++++|+..+..|+..+..
T Consensus 23 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~ 102 (166)
T cd01869 23 ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDR 102 (166)
T ss_pred hcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHH
Confidence 45678888999999665 67788899999999999999999999999999999999999999999999999999999877
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
... .+.|+++|+||+|+.+.+.++.+++..+++..+++++++||++|.|++++|+++++.+.
T Consensus 103 ~~~-~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 103 YAS-ENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred hCC-CCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHH
Confidence 652 56899999999999887888888999999999999999999999999999999998875
No 48
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=5.1e-29 Score=174.74 Aligned_cols=148 Identities=33% Similarity=0.534 Sum_probs=131.3
Q ss_pred ccccccccccccccceE-EEEEEE-CCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVI-DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
+.+.|...+.||++..+ .+.+.+ ++..+.+++|||+|++++..++..+++++|++++|||+++++||+++..|+..+.
T Consensus 23 ~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~ 102 (211)
T cd04111 23 TEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEAR 102 (211)
T ss_pred HcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 45678888999998554 677777 5778999999999999999999999999999999999999999999999999998
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccccC
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQC 150 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~ 150 (159)
+.......|+++|+||.|+.+.+.++.+++..+++.++++++++||++|.|++++|+++++.+.+...+.
T Consensus 103 ~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~~~~ 172 (211)
T cd04111 103 SHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRG 172 (211)
T ss_pred HhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcC
Confidence 7754456788999999999887888889999999999999999999999999999999999988776554
No 49
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.97 E-value=6.6e-29 Score=167.90 Aligned_cols=141 Identities=33% Similarity=0.564 Sum_probs=126.1
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
.++.|...|.||++..+ ...+..++..+.+++||++|++++..++..+++++|++++|||++++++++.+..|+..+.+
T Consensus 22 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~ 101 (165)
T cd01865 22 ADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT 101 (165)
T ss_pred hcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 46788889999999665 56677788889999999999999999999999999999999999999999999999999877
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
... .+.|+++|+||+|+.+.+.+..+++.++++.++++++++||++|.|++++|++++..+.
T Consensus 102 ~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 102 YSW-DNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred hCC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 542 46899999999999877777788888999999999999999999999999999998764
No 50
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.97 E-value=7.5e-29 Score=167.20 Aligned_cols=142 Identities=63% Similarity=0.976 Sum_probs=128.9
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+++.|..++.||+++.+.+.+.+++..+.+++||+||++++..++..+++++|++++|||++++++++.+..|...+.+.
T Consensus 21 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~ 100 (164)
T smart00173 21 VQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRV 100 (164)
T ss_pred HhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 45678889999999888888888999999999999999999999999999999999999999999999999999888877
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
....+.|+++|+||+|+.+.+.++.+++..+++..+++++++||++|.|++++|+++++.+.
T Consensus 101 ~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 101 KDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred cCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 65567899999999999877777788888899999999999999999999999999998765
No 51
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.97 E-value=7e-29 Score=174.56 Aligned_cols=144 Identities=25% Similarity=0.361 Sum_probs=127.9
Q ss_pred ccccccccccccccce-EEEEEEECC-eeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 3 IESYFVTDYDPTIEDS-YTKQCVIDD-IPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~-~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
+++.|.+.|.||++.. +.+.+.+++ ..+.++|||++|++.+..++..+++++|++|+|||+++++||+++..|+..+.
T Consensus 21 ~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~ 100 (215)
T cd04109 21 AKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVR 100 (215)
T ss_pred hcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 4677899999999944 577777754 67899999999999999999999999999999999999999999999999998
Q ss_pred hhcCC--CCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 81 RVKDR--DEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 81 ~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
+.... .+.|+++|+||.|+.+.+.++.+++..+++.++++++++||++|.|++++|+++++.+...
T Consensus 101 ~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 101 KVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred HhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 86532 3568999999999987788888899999999999999999999999999999999988764
No 52
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.97 E-value=1.1e-28 Score=166.20 Aligned_cols=141 Identities=79% Similarity=1.192 Sum_probs=127.4
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+.+.|...+.||+++.+.....+++..+.+++|||||++++..+++.+++++|++++|||++++++++.+..|+..+.+.
T Consensus 23 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~ 102 (164)
T cd04145 23 IQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRV 102 (164)
T ss_pred HhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 45678889999999888777888999999999999999999999999999999999999999999999999999998876
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
....+.|+++++||+|+...+.++.+++..+++.++++++++||++|.|+.++|+++++.+
T Consensus 103 ~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 103 KDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred hCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 5556789999999999987777778888899998899999999999999999999998754
No 53
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.97 E-value=9.2e-29 Score=166.94 Aligned_cols=143 Identities=28% Similarity=0.480 Sum_probs=128.6
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|.+.+.||++..+ .+.+.+++..+.+++|||+|++++..++..+++++|++|+|||++++++++.+..|+..+.+
T Consensus 21 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~ 100 (168)
T cd04119 21 CEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQ 100 (168)
T ss_pred HhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHH
Confidence 46778889999999666 77888899999999999999999999999999999999999999999999999999999988
Q ss_pred hcCC----CCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 82 VKDR----DEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 82 ~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
.... .+.|+++|+||+|+.+++.++.++...++...+++++++||++|.|+.++|+++++.+++
T Consensus 101 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~ 168 (168)
T cd04119 101 EGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIVD 168 (168)
T ss_pred hccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 7642 468999999999997667778888888999999999999999999999999999988753
No 54
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.97 E-value=1.4e-28 Score=165.09 Aligned_cols=140 Identities=60% Similarity=0.927 Sum_probs=126.2
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+.+.|..++.||+++.+.+.+.+++..+.+++||++|++++..++..++++++++++|||++++.+++.+..|+..+.+.
T Consensus 22 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~ 101 (162)
T cd04138 22 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRV 101 (162)
T ss_pred HhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 46778899999999888888888999999999999999999999999999999999999999999999999999999887
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
....+.|+++|+||+|+.+ +....+++..+++.++++++++||++|.|++++|+++++.+
T Consensus 102 ~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 102 KDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred cCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 6556889999999999876 45667788888888899999999999999999999998754
No 55
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=1.7e-28 Score=169.19 Aligned_cols=148 Identities=34% Similarity=0.531 Sum_probs=131.8
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
.++.|...|.||++..+ .+.+.+++..+.+++||++|++++..++..+++++|++++|||++++++|..+..|+..+..
T Consensus 21 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~ 100 (188)
T cd04125 21 TEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINR 100 (188)
T ss_pred hcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 46778888999999665 67788888899999999999999999999999999999999999999999999999999887
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccccCC
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQCK 151 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~ 151 (159)
... ...|++++|||.|+.+.+.++.+++..+++..+++++++||++|.|++++|+++++.+..+....+
T Consensus 101 ~~~-~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~~~~~~ 169 (188)
T cd04125 101 YAR-ENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIKRLEEQE 169 (188)
T ss_pred hCC-CCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhcCc
Confidence 653 458999999999998778888888899999999999999999999999999999999987654443
No 56
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=1.6e-28 Score=170.84 Aligned_cols=144 Identities=32% Similarity=0.490 Sum_probs=129.5
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|.+.+.||++..+ ...+.+++..+.++|||+||++++..++..++++++++++|||++++++|+.+..|+..+..
T Consensus 27 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~ 106 (199)
T cd04110 27 ADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQ 106 (199)
T ss_pred hcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 45678888999999655 67788889889999999999999999999999999999999999999999999999999877
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
.. ...|+++||||+|+.+...+..+++..+++..+++++++||++|.|++++|+++...+.....
T Consensus 107 ~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~~ 171 (199)
T cd04110 107 NC--DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKK 171 (199)
T ss_pred hC--CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHHhhh
Confidence 54 578999999999998877788888999999999999999999999999999999999987553
No 57
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=6e-29 Score=169.22 Aligned_cols=142 Identities=30% Similarity=0.532 Sum_probs=126.1
Q ss_pred cccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH-HHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY-KFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~ 80 (159)
++++.|...|.||++..+...+.+++..+.+++|||+|+++|..+++.+++++|++++|||+++++||+.+. .|+..+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~ 97 (174)
T smart00174 18 YTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVK 97 (174)
T ss_pred HHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 356788899999999888778888999999999999999999999999999999999999999999999986 6999887
Q ss_pred hhcCCCCCcEEEEEeCCCCCCc------------CCCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQ------------RQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
... +++|+++||||+|+... ..++.+++..+++.++. ++++|||++|.|++++|+.+++.+++
T Consensus 98 ~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 98 HFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAALN 173 (174)
T ss_pred hhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhcC
Confidence 754 57999999999998642 33778888999999996 89999999999999999999988754
No 58
>KOG0393|consensus
Probab=99.97 E-value=1e-29 Score=172.81 Aligned_cols=146 Identities=32% Similarity=0.539 Sum_probs=134.4
Q ss_pred CcccccccccccccccceEEEEEEEC-CeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH-HHHHH
Q psy11289 1 MKIESYFVTDYDPTIEDSYTKQCVID-DIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY-KFHRQ 78 (159)
Q Consensus 1 ~~~~~~f~~~~~pt~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~ 78 (159)
+|..+.|++.|.||+-+.|+..+.++ |+.+.+.+|||+|++.|..+++..+.++|++|+||++.+++||+++. .|+.+
T Consensus 23 ~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pE 102 (198)
T KOG0393|consen 23 SYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPE 102 (198)
T ss_pred EeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHH
Confidence 35678999999999999999999995 99999999999999999998888899999999999999999999987 89999
Q ss_pred HHhhcCCCCCcEEEEEeCCCCCC------------cCCCCHHHHHHHHHHcC-CcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 79 ILRVKDRDEFPMLMVGNKADLDH------------QRQVSSMDAQNVARQLR-IPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 79 i~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
+.+++ +++|+|+||+|.|+.+ ...++.+++..+|++.| ..|+||||++..|+.++|+..+..+..
T Consensus 103 i~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 103 IKHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred HHhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhc
Confidence 99988 8999999999999963 25788999999999999 569999999999999999999999987
Q ss_pred ccc
Q psy11289 146 HTK 148 (159)
Q Consensus 146 ~~~ 148 (159)
...
T Consensus 181 ~~~ 183 (198)
T KOG0393|consen 181 PPQ 183 (198)
T ss_pred ccc
Confidence 653
No 59
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=1.3e-28 Score=169.51 Aligned_cols=145 Identities=27% Similarity=0.452 Sum_probs=126.7
Q ss_pred ccccccccccccccceEEEEEEEC-CeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH-HHHHHHH
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVID-DIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY-KFHRQIL 80 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~ 80 (159)
+++.|.+++.||++..+...+... +..+.+++|||+|++++..+++.+++++|++++|||+++++||+.+. .|+..+.
T Consensus 21 ~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~ 100 (187)
T cd04132 21 SQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVN 100 (187)
T ss_pred HhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 567888999999998876666665 78899999999999999999999999999999999999999999997 5888776
Q ss_pred hhcCCCCCcEEEEEeCCCCCCc----CCCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHHHhcccc
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQ----RQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRIVLLHTKQ 149 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 149 (159)
... .+.|+++||||.|+... +.++..++.+++..+++ +++++||++|.|++++|+.+++.+......
T Consensus 101 ~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~ 172 (187)
T cd04132 101 HFC--PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKEGK 172 (187)
T ss_pred HhC--CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhhhh
Confidence 653 57899999999998643 35678888999999998 899999999999999999999999877654
No 60
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=1.3e-28 Score=173.57 Aligned_cols=141 Identities=30% Similarity=0.501 Sum_probs=123.7
Q ss_pred cccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
++.+.|...+.||+|..+ ...+..++..+++++||++|+++|..++..++++++++|+|||+++++||+.+..|+..+.
T Consensus 33 ~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~ 112 (219)
T PLN03071 33 HLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC 112 (219)
T ss_pred HhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 357789999999999554 6677778888999999999999999999999999999999999999999999999999998
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
+.. .++|+++||||+|+.. +.+..++. .+++..++++++|||++|.|++++|+++++.+.+.
T Consensus 113 ~~~--~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 113 RVC--ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred HhC--CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence 764 5799999999999864 44445454 77888889999999999999999999999998755
No 61
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.96 E-value=2.8e-28 Score=164.80 Aligned_cols=140 Identities=35% Similarity=0.583 Sum_probs=124.3
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+.+.|...+.||++..+...+..++..+.+++||++|+++|..++..++++++++++|||++++++++.+..|+..+.+.
T Consensus 22 ~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~ 101 (165)
T cd04140 22 VKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEI 101 (165)
T ss_pred HhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 46788889999999888777788888899999999999999999999999999999999999999999999998887765
Q ss_pred cC--CCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 83 KD--RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 83 ~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
.. ..++|+++|+||+|+.+.+.+..+++..++...++++++|||++|.|++++|++++..
T Consensus 102 ~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 102 KGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred hcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 42 2578999999999997767787888888888889999999999999999999999863
No 62
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.96 E-value=6.1e-28 Score=163.62 Aligned_cols=142 Identities=51% Similarity=0.863 Sum_probs=128.9
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
.++.|.+++.||++..+.+.+.+++..+.+++||++|+++|..+++.++++++++++|||++++++++.+..|...+.+.
T Consensus 22 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~ 101 (168)
T cd04177 22 VQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRI 101 (168)
T ss_pred HhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 46778889999999888888888999999999999999999999999999999999999999999999999999998876
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcC-CcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
....++|+++++||.|+.+.+.++.++...+++..+ ++++++||++|.|++++|++++.++.
T Consensus 102 ~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 102 KDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164 (168)
T ss_pred hCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 555689999999999998778888888888888888 88999999999999999999998764
No 63
>PLN03110 Rab GTPase; Provisional
Probab=99.96 E-value=6.1e-28 Score=169.85 Aligned_cols=144 Identities=29% Similarity=0.511 Sum_probs=129.9
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ .+.+.+++..+.++|||++|++++.+++..++++++++++|||++++++|+.+..|+..+..
T Consensus 33 ~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~ 112 (216)
T PLN03110 33 TRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRD 112 (216)
T ss_pred hcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHH
Confidence 45677778899999666 78888999999999999999999999999999999999999999999999999999999877
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
... .+.|+++|+||+|+.+.+.++.+++..++..++++++++||++|.|++++|++++..+.+..
T Consensus 113 ~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~~ 177 (216)
T PLN03110 113 HAD-SNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHII 177 (216)
T ss_pred hCC-CCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 643 57899999999999887888888999999999999999999999999999999999887643
No 64
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=8.8e-28 Score=166.11 Aligned_cols=144 Identities=28% Similarity=0.557 Sum_probs=127.8
Q ss_pred cccccc-ccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 3 IESYFV-TDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 3 ~~~~f~-~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
+.+.|. +.+.||++..+ ...+.+++..+.++||||||++++..++..+++++|++++|||++++++++++..|+..+.
T Consensus 21 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~ 100 (191)
T cd04112 21 KDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIK 100 (191)
T ss_pred hcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 345664 47889998666 5678889999999999999999999999999999999999999999999999999999988
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
+... .++|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|+++.+.+....
T Consensus 101 ~~~~-~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 101 EYAQ-EDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRK 166 (191)
T ss_pred HhCC-CCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 7643 47899999999999777777888889999999999999999999999999999999998774
No 65
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.96 E-value=4.2e-28 Score=163.86 Aligned_cols=142 Identities=42% Similarity=0.670 Sum_probs=124.6
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccc-hHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEF-SAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|.++|.||++..+...+.+++..+++++||+||++++ ......+++++|++++|||+++++||+.+..|+..+..
T Consensus 20 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 99 (165)
T cd04146 20 LTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIRE 99 (165)
T ss_pred HhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 46778889999998777777888999999999999999863 44577889999999999999999999999999988887
Q ss_pred hcC-CCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCC-CCHHHHHHHHHHHHH
Q psy11289 82 VKD-RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVR-INVDQAFHELVRIVL 144 (159)
Q Consensus 82 ~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~-~~i~~~~~~l~~~~~ 144 (159)
... ..++|+++||||+|+.+.+.++.+++..+++..+++++++||++| .|++++|+++++.+.
T Consensus 100 ~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 100 IKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred HhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 653 357999999999999877888888889999999999999999999 599999999998764
No 66
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.96 E-value=4.5e-28 Score=163.00 Aligned_cols=138 Identities=36% Similarity=0.567 Sum_probs=123.6
Q ss_pred ccccccccccccccceE-EEEEEEC--CeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHH
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVID--DIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQI 79 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i 79 (159)
+.+.|.+.+.||++..+ ...+.++ +..+++++||+||++++..++..+++++|++++|||++++++++.+..|+..+
T Consensus 21 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~ 100 (162)
T cd04106 21 VKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKV 100 (162)
T ss_pred hcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 45678888999999665 6667776 78889999999999999999999999999999999999999999999999998
Q ss_pred HhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 80 LRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 80 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
.+.. .++|+++|+||.|+.....++.+++..+++.++++++++||++|.|++++|+++...
T Consensus 101 ~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 101 EAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred HHhC--CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 7654 578999999999998777888888999999999999999999999999999998753
No 67
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.96 E-value=4.6e-28 Score=162.82 Aligned_cols=135 Identities=22% Similarity=0.454 Sum_probs=115.8
Q ss_pred cccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 2 KIESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
++++.|.+.++|+ +..+...+.++|..+.+++||++|++. ..+++++|++++|||+++++||+.+..|+..+..
T Consensus 20 ~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~ 93 (158)
T cd04103 20 YLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSS 93 (158)
T ss_pred HHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 3567888888776 444567788999999999999999975 3567899999999999999999999999999988
Q ss_pred hcCCCCCcEEEEEeCCCCC--CcCCCCHHHHHHHHHHc-CCcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 82 VKDRDEFPMLMVGNKADLD--HQRQVSSMDAQNVARQL-RIPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
.....+.|+++||||.|+. ..+.++.+++.+++++. ++++++|||++|.||+++|+.+++.
T Consensus 94 ~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 94 YRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred hcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 7655678999999999985 35778888999999876 4899999999999999999999864
No 68
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.96 E-value=3.5e-28 Score=165.59 Aligned_cols=137 Identities=34% Similarity=0.575 Sum_probs=121.7
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH-HHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY-KFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~~ 81 (159)
+++.|.++|.||+.+.+...+.+++..+++++||++|++++..+++.+++++|++++|||++++++|+.+. .|+..+..
T Consensus 21 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~ 100 (173)
T cd04130 21 TTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRK 100 (173)
T ss_pred HhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 46789999999998888778888999999999999999999999999999999999999999999999985 68888876
Q ss_pred hcCCCCCcEEEEEeCCCCCC------------cCCCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHH
Q psy11289 82 VKDRDEFPMLMVGNKADLDH------------QRQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVR 141 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~ 141 (159)
.. ++.|++++|||.|+.. .+.++.+++..+++..++ +++++||++|.|++++|+.++-
T Consensus 101 ~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 101 HN--PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred hC--CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 43 5689999999999853 457788889999999997 8999999999999999998864
No 69
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.96 E-value=1.1e-27 Score=171.31 Aligned_cols=146 Identities=38% Similarity=0.575 Sum_probs=126.9
Q ss_pred cccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 2 KIESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
++.+.|.+.|.||+++.+.+.+.+++..+.++||||+|+++|..++..++.++|++|+|||+++++||+.+..|+..+..
T Consensus 20 ~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~ 99 (247)
T cd04143 20 FLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILE 99 (247)
T ss_pred HHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 35688989999999988888889999999999999999999988888889999999999999999999999999999876
Q ss_pred hc--------CCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHH-cCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 82 VK--------DRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQ-LRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 82 ~~--------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.. ...++|+++|+||+|+...+.+..++..+++.. .+++++++||++|.|++++|++++..+....
T Consensus 100 ~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~~~p~ 174 (247)
T cd04143 100 TKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAKLPN 174 (247)
T ss_pred hhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhcccc
Confidence 42 224789999999999987677888888777764 4678999999999999999999998764333
No 70
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.96 E-value=2e-27 Score=161.10 Aligned_cols=142 Identities=29% Similarity=0.502 Sum_probs=127.4
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ ...+.+++..+.+++||++|++++..+...+++++|++++|||+++++|++.+..|+..+.+
T Consensus 25 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~ 104 (168)
T cd01866 25 TDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ 104 (168)
T ss_pred HcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 45677888889988665 67788899888999999999999999999999999999999999999999999999999877
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
... ++.|+++|+||.|+.+.+.++.+++..++...+++++++||+++.|++++|.++++++.+
T Consensus 105 ~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 105 HSN-SNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred hCC-CCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 643 678999999999998777888889999999999999999999999999999999988754
No 71
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.96 E-value=1.2e-27 Score=162.30 Aligned_cols=139 Identities=37% Similarity=0.566 Sum_probs=123.2
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|.+.+.||++..+ .+.+.+++..+.+++||++|++++..++..+++++|++++|||+++++|++.+..|...+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 105 (170)
T cd04116 26 VTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIY 105 (170)
T ss_pred HcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHH
Confidence 46778888899998665 67888899999999999999999999999999999999999999999999999999998877
Q ss_pred hcC---CCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcC-CcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 82 VKD---RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLR-IPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 82 ~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
... ..++|+++|+||.|+. .+.++.+++.+++++++ .+++++||++|.|+.++|+++++.
T Consensus 106 ~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 106 YADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred hcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 553 2468999999999986 46677888999999888 479999999999999999999875
No 72
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.96 E-value=2.3e-27 Score=160.16 Aligned_cols=140 Identities=32% Similarity=0.534 Sum_probs=125.4
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ .+.+..++..+.+++||++|++++..+++.++++++++++|||+++++++.++..|+..+.+
T Consensus 24 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~ 103 (165)
T cd01868 24 TRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRD 103 (165)
T ss_pred hcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 34677888899999665 77888899889999999999999999999999999999999999999999999999999887
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
... .++|+++|+||.|+...+.+..++...++...+++++++||++|.|++++|++++..+
T Consensus 104 ~~~-~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 104 HAD-SNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred hCC-CCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 653 3689999999999987778888888999988899999999999999999999998765
No 73
>PLN03108 Rab family protein; Provisional
Probab=99.96 E-value=3.4e-27 Score=165.43 Aligned_cols=144 Identities=30% Similarity=0.526 Sum_probs=129.6
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|.+.+.||++..+ ...+.+++..+.+++||++|++++..++..+++++|++++|||+++++++..+..|+..+..
T Consensus 27 ~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~ 106 (210)
T PLN03108 27 TDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 106 (210)
T ss_pred HhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHH
Confidence 35678888999999666 67788899999999999999999999999999999999999999999999999999988876
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
... .+.|+++|+||+|+.+.+.++.+++.++++.++++++++||+++.|++++|+++++.+.+..
T Consensus 107 ~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~~ 171 (210)
T PLN03108 107 HAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKI 171 (210)
T ss_pred hcC-CCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 543 57899999999999887888899999999999999999999999999999999999988654
No 74
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.96 E-value=2.5e-27 Score=166.71 Aligned_cols=138 Identities=31% Similarity=0.443 Sum_probs=117.1
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|.. +.||++..+ .... ..+.+.+||++|+++|..+++.+++++|++|+|||+++++||+.+..|+..+.+
T Consensus 21 ~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~ 95 (220)
T cd04126 21 MERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTD 95 (220)
T ss_pred hcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 4566764 688988554 3222 457788999999999999999999999999999999999999999988888776
Q ss_pred hcCCCCCcEEEEEeCCCCCC-------------------cCCCCHHHHHHHHHHcC--------------CcEEEeCCCC
Q psy11289 82 VKDRDEFPMLMVGNKADLDH-------------------QRQVSSMDAQNVARQLR--------------IPYIECSAKV 128 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~--------------~~~~~~sa~~ 128 (159)
.. ..++|+++||||+|+.+ .+.++.+++..+|++.+ ++|+||||++
T Consensus 96 ~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~t 174 (220)
T cd04126 96 TA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKT 174 (220)
T ss_pred hc-CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCC
Confidence 53 35789999999999965 57888999999999876 6899999999
Q ss_pred CCCHHHHHHHHHHHHHhc
Q psy11289 129 RINVDQAFHELVRIVLLH 146 (159)
Q Consensus 129 ~~~i~~~~~~l~~~~~~~ 146 (159)
|.||+++|..+++.+...
T Consensus 175 g~~V~elf~~i~~~~~~~ 192 (220)
T cd04126 175 GYNVDELFEYLFNLVLPL 192 (220)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999887743
No 75
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=2.5e-27 Score=160.05 Aligned_cols=139 Identities=30% Similarity=0.464 Sum_probs=123.6
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|.+.+.||.+..+ .+.+.+++..+.+++||+||++++..++..+++++|++++|||+++++++..+..|+..+..
T Consensus 24 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~ 103 (165)
T cd01864 24 KSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEK 103 (165)
T ss_pred hhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHH
Confidence 35678888899998555 67788899889999999999999999999999999999999999999999999999999877
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
.. ..++|+++|+||+|+.+.+.+..+++..+++..+. .++++||++|.|++++|+++.+.
T Consensus 104 ~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 104 YG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred hC-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 54 25789999999999987778888889999998886 58999999999999999999864
No 76
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.96 E-value=3.9e-27 Score=159.98 Aligned_cols=141 Identities=30% Similarity=0.418 Sum_probs=126.2
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccch-HHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFS-AMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
+.+.|...+.||++..+ .+.+.+++..+.+++||++|++++. .+++.+++++|++++|||+++++++..+..|+..+.
T Consensus 23 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 102 (170)
T cd04115 23 CAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECE 102 (170)
T ss_pred HhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHH
Confidence 45678888999998655 6778889999999999999999886 578899999999999999999999999999999988
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCC---CCCHHHHHHHHHHHH
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKV---RINVDQAFHELVRIV 143 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~---~~~i~~~~~~l~~~~ 143 (159)
......++|+++|+||+|+.+.+.++.+++.++++..+++++++||++ +.|++++|..+++.+
T Consensus 103 ~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 103 QHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred HhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 876556799999999999988888888899999999999999999999 899999999998765
No 77
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.96 E-value=3.6e-27 Score=159.67 Aligned_cols=139 Identities=29% Similarity=0.504 Sum_probs=120.3
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ ...+..++..+.+++|||+|++++..++..+++++|++|+|||+++++|+..+..|+..+.+
T Consensus 21 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 100 (166)
T cd00877 21 LTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVR 100 (166)
T ss_pred HhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 45678888999998655 56667788889999999999999988889999999999999999999999999999999988
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
.. .++|+++||||+|+.+ +.+. .+..++++..+++++++||++|.|++++|+++++.+.+
T Consensus 101 ~~--~~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 101 VC--GNIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred hC--CCCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 75 3799999999999873 3333 34456777778899999999999999999999998865
No 78
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.96 E-value=5.2e-27 Score=157.83 Aligned_cols=139 Identities=32% Similarity=0.511 Sum_probs=125.0
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||.+..+ ...+.+++..+.+++||+||++++..++..+++++|++++|||+++++++..+..|+..+..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~ 100 (161)
T cd04113 21 VENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARA 100 (161)
T ss_pred HhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 35677788889998665 67788889889999999999999999999999999999999999999999999999998876
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
... +++|+++++||.|+.+.+.++.+++..+++..+++++++||+++.|+.++|+++++.
T Consensus 101 ~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 101 LAS-PNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred hCC-CCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 643 678999999999998777888889999999999999999999999999999999875
No 79
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.96 E-value=9.3e-27 Score=161.08 Aligned_cols=143 Identities=28% Similarity=0.479 Sum_probs=124.6
Q ss_pred ccccccc-cccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 3 IESYFVT-DYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 3 ~~~~f~~-~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
+.+.|.. .|.||++..+ .+.+.+++..+.+++||++|++++..++..+++++|++++|||++++++++.+..|+..+.
T Consensus 21 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~ 100 (193)
T cd04118 21 VHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQ 100 (193)
T ss_pred HhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 4567764 7899999776 6788899999999999999999999999999999999999999999999999999999887
Q ss_pred hhcCCCCCcEEEEEeCCCCCCc----CCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQ----RQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
... .+.|+++|+||+|+.+. +.+..+++..++...+++++++||++|.|++++|+++.+.+.+..
T Consensus 101 ~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~ 169 (193)
T cd04118 101 NLE--EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRA 169 (193)
T ss_pred hcC--CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 753 47899999999998532 455667788888888999999999999999999999999887654
No 80
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.96 E-value=8.3e-27 Score=157.11 Aligned_cols=139 Identities=25% Similarity=0.406 Sum_probs=119.6
Q ss_pred ccccccccccccccce-EEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDS-YTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|.+.+.||.+.. +.+...+++..+.+++|||+|+++|..+++.+++++|++++|||++++.+++++..|+..+.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 100 (161)
T cd04124 21 LMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELRE 100 (161)
T ss_pred HhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 4567888888888744 466777889999999999999999999999999999999999999999999999999999877
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
.. ++.|+++|+||+|+... . ..+...+++..+++++++||++|.|++++|+.+++.+.++
T Consensus 101 ~~--~~~p~ivv~nK~Dl~~~--~-~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 101 YR--PEIPCIVVANKIDLDPS--V-TQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred hC--CCCcEEEEEECccCchh--H-HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 54 57899999999998432 1 3455677777889999999999999999999999988764
No 81
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.95 E-value=8.2e-27 Score=162.04 Aligned_cols=147 Identities=26% Similarity=0.422 Sum_probs=121.4
Q ss_pred ccccccccccccccce-EEEEEEECCeeEEEEEEeCCCcccchH--------HHHHHhhcCCEEEEEEECCChhhHHHHH
Q psy11289 3 IESYFVTDYDPTIEDS-YTKQCVIDDIPARLDILDTAGQEEFSA--------MREQYMRSGEGFLLVFSVTDRNSFEEIY 73 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~~~ii~v~d~~~~~s~~~~~ 73 (159)
+.+.|...|.||++.. +...+.++|..+.+++|||+|..++.. .....++++|++++|||+++++||+.+.
T Consensus 21 ~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~ 100 (198)
T cd04142 21 LAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVK 100 (198)
T ss_pred HcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHH
Confidence 5678888999999855 466778899999999999999765421 1334478999999999999999999999
Q ss_pred HHHHHHHhhcC--CCCCcEEEEEeCCCCCCcCCCCHHHHHHHHH-HcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcccc
Q psy11289 74 KFHRQILRVKD--RDEFPMLMVGNKADLDHQRQVSSMDAQNVAR-QLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQ 149 (159)
Q Consensus 74 ~~~~~i~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 149 (159)
.|+..+.+... ..++|+++|+||+|+.+.+.++.++...++. ..++++++|||++|.|++++|+.++..+..+.+.
T Consensus 101 ~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 101 LLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred HHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhccCCC
Confidence 99998887642 3678999999999997767777777777754 5689999999999999999999999988866654
No 82
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.95 E-value=1.3e-26 Score=156.30 Aligned_cols=136 Identities=29% Similarity=0.483 Sum_probs=120.4
Q ss_pred cccccccccccceE-EEEEEEC-CeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 6 YFVTDYDPTIEDSY-TKQCVID-DIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 6 ~f~~~~~pt~~~~~-~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
.|.++|.||++..+ ...+.++ +..+.+++||++|++++..+++.+++++|++++|||+++++++..+..|+..+....
T Consensus 26 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~ 105 (164)
T cd04101 26 VFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS 105 (164)
T ss_pred CcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC
Confidence 68899999998555 5666664 678999999999999999999999999999999999999999999999999988764
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
.+.|+++|+||+|+.+...++..++..++...+++++++||++|.|++++|+.+++.+
T Consensus 106 --~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 106 --KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred --CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 5689999999999977777777777778888889999999999999999999998865
No 83
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.95 E-value=9.2e-27 Score=158.46 Aligned_cols=140 Identities=26% Similarity=0.479 Sum_probs=123.2
Q ss_pred cccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH-HHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY-KFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~ 80 (159)
++.+.|.+.+.||+++.+...+.+++..+.+++||++|+++|...++.+++++|++++|||++++++|+.+. .|+..+.
T Consensus 20 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~ 99 (174)
T cd04135 20 YANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK 99 (174)
T ss_pred HHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 356788889999998888778888999999999999999999988999999999999999999999999986 6887776
Q ss_pred hhcCCCCCcEEEEEeCCCCCCc------------CCCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQ------------RQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
.. .++.|+++|+||+|+.+. +.++.+++..+++.+++ ++++|||++|.|++++|+.++..+
T Consensus 100 ~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 100 EY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred hh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 65 367999999999998542 36778889999999986 699999999999999999999876
No 84
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.95 E-value=4.2e-26 Score=153.57 Aligned_cols=140 Identities=31% Similarity=0.536 Sum_probs=126.1
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ ...+.+++..+.+.+||+||++++...+..+++++|++++|||+++++++..+..|+..+..
T Consensus 22 ~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~ 101 (163)
T cd01860 22 VKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQR 101 (163)
T ss_pred HcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 45677777899999766 78888999999999999999999999999999999999999999999999999999999887
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
... .+.|+++++||+|+......+.++...++...+++++++||++|.|+.++|+++++.+
T Consensus 102 ~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 102 NAS-PNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred hCC-CCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 654 6789999999999987677788888899999999999999999999999999999875
No 85
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.95 E-value=4.9e-26 Score=153.23 Aligned_cols=141 Identities=38% Similarity=0.638 Sum_probs=125.7
Q ss_pred cccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 4 ESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
.+.+...+.||++..+ ...+.+++..+.+++||+||++++...+..+++++|++++|||++++.+++.+..|+..+...
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~ 101 (164)
T smart00175 22 DGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREY 101 (164)
T ss_pred cCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 4566777888888665 677788898889999999999999999999999999999999999999999999999998877
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
.. +++|+++++||+|+...+.+..+.+..+++..+++++++||++|.|++++|+++.+.+.+
T Consensus 102 ~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 102 AD-PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred CC-CCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 54 579999999999998767778888889999999999999999999999999999998754
No 86
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.95 E-value=4.2e-26 Score=161.02 Aligned_cols=143 Identities=31% Similarity=0.510 Sum_probs=123.0
Q ss_pred cccccc-cccccccc-ceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhh-cCCEEEEEEECCChhhHHHHHHHHHHH
Q psy11289 3 IESYFV-TDYDPTIE-DSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMR-SGEGFLLVFSVTDRNSFEEIYKFHRQI 79 (159)
Q Consensus 3 ~~~~f~-~~~~pt~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-~~~~ii~v~d~~~~~s~~~~~~~~~~i 79 (159)
+.+.|. ..|.||.+ +.+.+.+.+++..+.+++||++|++. .....+++ ++|++++|||++++.+|+.+..|+..+
T Consensus 21 ~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l 98 (221)
T cd04148 21 TSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQL 98 (221)
T ss_pred hcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 456775 78888887 55678889999999999999999983 23455667 999999999999999999999999988
Q ss_pred HhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 80 LRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 80 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.......++|+++|+||+|+.+.+.++.+++..++...+++++++||++|.|++++|++++.++....
T Consensus 99 ~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~~~ 166 (221)
T cd04148 99 RRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRLRR 166 (221)
T ss_pred HHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHhhh
Confidence 87654467999999999999877888888888999988999999999999999999999999987433
No 87
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.95 E-value=8e-26 Score=152.10 Aligned_cols=143 Identities=56% Similarity=0.881 Sum_probs=128.1
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+++.|...+.||+++.+.+...+++..+.+++||++|++.+..++..+++.++++++|||++++.++..+..|+..+...
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~ 100 (164)
T cd04139 21 MYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRV 100 (164)
T ss_pred HhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 35678889999999888888888999999999999999999999999999999999999999999999999999998887
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
....++|+++|+||+|+.+.......+...+++.++++++++||++|.|++++|+++.+++.+
T Consensus 101 ~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 163 (164)
T cd04139 101 KDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIRQ 163 (164)
T ss_pred cCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 554679999999999997655666777888888899999999999999999999999988753
No 88
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=1.2e-26 Score=157.48 Aligned_cols=141 Identities=22% Similarity=0.326 Sum_probs=120.2
Q ss_pred ccccccc-ccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHH
Q psy11289 2 KIESYFV-TDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQI 79 (159)
Q Consensus 2 ~~~~~f~-~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i 79 (159)
++.+.|. ++|.||++..+ ...+.++|..+.+.+||++|++++..++..+++++|++++|||++++++++.+..|+..+
T Consensus 24 ~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~ 103 (169)
T cd01892 24 FLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKY 103 (169)
T ss_pred HhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHh
Confidence 3567888 89999999877 567788998889999999999999888999999999999999999999999998988765
Q ss_pred HhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCc-EEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 80 LRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIP-YIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 80 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
... .++|+++|+||+|+.+.......+...+++.+++. ++++||++|.|++++|+.+.+.+..
T Consensus 104 ~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 104 FML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQY 167 (169)
T ss_pred ccC---CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhhC
Confidence 331 46899999999999765554445567788888874 7999999999999999999998763
No 89
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.95 E-value=5.8e-26 Score=152.57 Aligned_cols=139 Identities=31% Similarity=0.528 Sum_probs=123.1
Q ss_pred ccccccccccccccce-EEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDS-YTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.|+++.. +...+.+++..+++++||+||++++..++..+++++|++++|||+++++++..+..|+..+..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~ 100 (161)
T cd01861 21 MYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRD 100 (161)
T ss_pred HcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 3567777888998855 477888888889999999999999999999999999999999999999999999999999877
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
... .+.|+++++||+|+.+....+.++...+++..+++++++||+++.|++++|+++.+.
T Consensus 101 ~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 101 ERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred hCC-CCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 543 368999999999997667778888889999889999999999999999999999864
No 90
>PLN03118 Rab family protein; Provisional
Probab=99.95 E-value=9.2e-26 Score=158.28 Aligned_cols=139 Identities=32% Similarity=0.555 Sum_probs=121.1
Q ss_pred ccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHH-HHHHHHhhcCCC
Q psy11289 9 TDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYK-FHRQILRVKDRD 86 (159)
Q Consensus 9 ~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~ 86 (159)
..+.||++..+ ...+.+++..+.++||||||++++..++..+++++|++++|||++++++|+.+.. |...+.......
T Consensus 40 ~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~ 119 (211)
T PLN03118 40 EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQ 119 (211)
T ss_pred CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 56788988665 6777888888999999999999999999999999999999999999999999975 655555444335
Q ss_pred CCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 87 EFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 87 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
+.|+++|+||+|+...+.++.++...++..++++++++||++|.|++++|+++...+....
T Consensus 120 ~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 120 DCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVP 180 (211)
T ss_pred CCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 6899999999999877778888888999999999999999999999999999999887654
No 91
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.95 E-value=1.2e-25 Score=151.04 Aligned_cols=139 Identities=33% Similarity=0.546 Sum_probs=122.7
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ ...+.+++..+.+++||+||++++..++..+++++|++++|||++++++++.+..|++.+..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 100 (161)
T cd01863 21 TDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELET 100 (161)
T ss_pred HcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHH
Confidence 35567777899999665 56677888889999999999999998999999999999999999999999999999999988
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
.....+.|+++++||+|+.. .....++...+++..+++++++||++|.|++++++++++.
T Consensus 101 ~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 101 YSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred hCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 87667899999999999873 4556778889999999999999999999999999999875
No 92
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.94 E-value=1.1e-25 Score=153.29 Aligned_cols=140 Identities=28% Similarity=0.489 Sum_probs=120.0
Q ss_pred cccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH-HHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY-KFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~ 80 (159)
++.+.|.+.|.||+++.+...+.+++..+.+++|||+|+++|..++..+++++|++++|||++++++|+.+. .|+..+.
T Consensus 21 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~ 100 (175)
T cd01870 21 FSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 100 (175)
T ss_pred HhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 346788889999999887777888999999999999999999888888899999999999999999999986 6888877
Q ss_pred hhcCCCCCcEEEEEeCCCCCCc------------CCCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQ------------RQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
+.. .+.|+++|+||+|+.+. ..+...++..+++..+. ++++|||++|.|++++|+++++.+
T Consensus 101 ~~~--~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 101 HFC--PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred hhC--CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 653 57899999999998542 33556778888888875 799999999999999999998764
No 93
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.94 E-value=3.2e-25 Score=150.38 Aligned_cols=145 Identities=37% Similarity=0.609 Sum_probs=125.7
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
.++.|...+.||++..+ .+.+.+++..+.+++||+||++.+..++..+++++|++|++||++++++++.+..|...+..
T Consensus 21 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 100 (172)
T cd01862 21 VNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLI 100 (172)
T ss_pred hcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 45667778888988555 67788899999999999999999999999999999999999999999999999999888766
Q ss_pred hcC---CCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcC-CcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 82 VKD---RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLR-IPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 82 ~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
... ..++|+++|+||+|+..++..+.++...+++..+ ++++++||++|.|++++|+++++.+.+..
T Consensus 101 ~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~ 170 (172)
T cd01862 101 QASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALEQE 170 (172)
T ss_pred hcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 543 2378999999999998666677788888888887 78999999999999999999999888763
No 94
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.94 E-value=3.1e-25 Score=148.82 Aligned_cols=139 Identities=31% Similarity=0.527 Sum_probs=122.5
Q ss_pred cccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 4 ESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
.+.+.+.+.||++..+ ...+.+++..+.+.+||++|++.+..+++.+++++|++++|||++++++++.+..|+..+...
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~ 101 (162)
T cd04123 22 ENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQM 101 (162)
T ss_pred hCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 4566677778887554 667777888889999999999999999999999999999999999999999999999998877
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
.. .++|+++++||+|+...+.+..++...+++..+++++++||+++.|++++++++.+.+
T Consensus 102 ~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 102 RG-NNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred CC-CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 64 3789999999999987777888888888988999999999999999999999998765
No 95
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.94 E-value=2.3e-25 Score=154.88 Aligned_cols=145 Identities=36% Similarity=0.536 Sum_probs=122.9
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+.+.|...+.||+++.+...+.+++..+.+++||++|+.+|..++..+++++|++++|||++++.+++.+..|+..+...
T Consensus 20 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~ 99 (198)
T cd04147 20 LYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEV 99 (198)
T ss_pred HhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 45678888899998766778888998899999999999999989999999999999999999999999999999998887
Q ss_pred cCCCCCcEEEEEeCCCCCC-cCCCCHHHHHHHHH-HcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 83 KDRDEFPMLMVGNKADLDH-QRQVSSMDAQNVAR-QLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
....++|+++|+||+|+.. .+.+..++..+.+. ..+++++++||++|.|++++|+++++.+....
T Consensus 100 ~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 166 (198)
T cd04147 100 KEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQANLPY 166 (198)
T ss_pred cCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhhccc
Confidence 6556799999999999865 35555555554443 45678999999999999999999999876433
No 96
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.94 E-value=6.7e-25 Score=150.15 Aligned_cols=148 Identities=35% Similarity=0.568 Sum_probs=130.7
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
++.|...+.||++..+...+..++..+.+++||+||++++..++..++..++++++|||+++..+++.+..|+..+.+..
T Consensus 23 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 102 (180)
T cd04137 23 EGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDML 102 (180)
T ss_pred hCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 56777889999988777888888888899999999999999999999999999999999999999999999999988865
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccccCC
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQCK 151 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~ 151 (159)
...+.|+++|+||+|+...+.+..++...+++.++++++++||+++.|+.++|+++.+.+.+......
T Consensus 103 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~~~ 170 (180)
T cd04137 103 GKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEKVENPLD 170 (180)
T ss_pred CCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcCCCC
Confidence 55678999999999997767777777788888889999999999999999999999999887665443
No 97
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.94 E-value=6.5e-25 Score=147.01 Aligned_cols=139 Identities=56% Similarity=0.916 Sum_probs=126.1
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
.+.|..++.||+++.+...+..++..+++++||+||++.+..++..+++++|++++|||+++++++..+..|+..+....
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 100 (160)
T cd00876 21 KGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVK 100 (160)
T ss_pred hCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45688899999997778888888888999999999999999999999999999999999999999999999999988876
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
.....|+++++||+|+.+.+.++.+++..++..++++++++||+++.|++++|+++++.
T Consensus 101 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 101 DDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 54579999999999998777788888999999989999999999999999999999875
No 98
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.94 E-value=2.2e-25 Score=152.93 Aligned_cols=134 Identities=16% Similarity=0.242 Sum_probs=104.3
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
.+.|. ++.||++..+. .+ +...+.+++||+||++++..+|..+++++|++|+|||+++++++..+..|+..+....
T Consensus 39 ~~~~~-~~~pt~g~~~~-~~--~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~ 114 (181)
T PLN00223 39 LGEIV-TTIPTIGFNVE-TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED 114 (181)
T ss_pred cCCCc-cccCCcceeEE-EE--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCH
Confidence 45565 57899886543 23 3345678889999999999999999999999999999999999999888887776543
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCC--------cEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRI--------PYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
...++|+++++||+|+.+. .+.+ ++.+.+++ .++++||++|.|+.++|+++.+.+..+
T Consensus 115 ~~~~~piilv~NK~Dl~~~--~~~~---~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 115 ELRDAVLLVFANKQDLPNA--MNAA---EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred hhCCCCEEEEEECCCCCCC--CCHH---HHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhhc
Confidence 3357899999999998653 3333 33444443 356899999999999999999887653
No 99
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.94 E-value=5.9e-25 Score=151.50 Aligned_cols=144 Identities=33% Similarity=0.550 Sum_probs=123.6
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH-HHHHHHHhh
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY-KFHRQILRV 82 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~~~ 82 (159)
.+.|.+.+.||+++.+...+.+++..+.+.+||++|++.+....+.+++++++++++||++++++++.+. .|+..+.+.
T Consensus 23 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~ 102 (187)
T cd04129 23 LGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRY 102 (187)
T ss_pred hCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence 5678888899988887777788888889999999999988777777889999999999999999999997 699888765
Q ss_pred cCCCCCcEEEEEeCCCCCC----------cCCCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHHHhcccc
Q psy11289 83 KDRDEFPMLMVGNKADLDH----------QRQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRIVLLHTKQ 149 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 149 (159)
. +++|+++||||+|+.+ .+.++.+++..+++..+. ++++|||++|.|++++|+++.+.+....+.
T Consensus 103 ~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~ 178 (187)
T cd04129 103 C--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALLVRKS 178 (187)
T ss_pred C--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhcccCc
Confidence 4 5699999999999843 345667788899999985 799999999999999999999888765543
No 100
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.93 E-value=8.2e-26 Score=152.75 Aligned_cols=134 Identities=19% Similarity=0.297 Sum_probs=108.9
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+++.|.+++.||++..+ ..+++..+++++||++|++++..++..+++++|++++|||.+++.++..+..|+..+...
T Consensus 20 ~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~ 96 (164)
T cd04162 20 SSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQH 96 (164)
T ss_pred hcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhC
Confidence 45678888999998543 234556678889999999999999999999999999999999999999999998888654
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCH----HHHHHHHHHcCCcEEEeCCCC------CCCHHHHHHHHHH
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSS----MDAQNVARQLRIPYIECSAKV------RINVDQAFHELVR 141 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~sa~~------~~~i~~~~~~l~~ 141 (159)
. .++|+++|+||.|+...+.++. .++..++++.+++++++||++ +.|+.++|+.++.
T Consensus 97 ~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 97 P--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred C--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 3 6799999999999876554321 123455666678899988888 9999999998874
No 101
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=3.3e-24 Score=145.17 Aligned_cols=139 Identities=30% Similarity=0.472 Sum_probs=121.1
Q ss_pred cccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 4 ESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
.+.+.+.+.||++..+ ...+.+++..+.+.+||++|++.+...+..+++.+|++++|||++++++++.+..|+..+...
T Consensus 29 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~ 108 (169)
T cd04114 29 QGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY 108 (169)
T ss_pred hCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 4567777888888444 677888998889999999999999998899999999999999999999999999999888766
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
.. .+.|+++|+||+|+.+.+.+..+....+.+....+++++||++|.|+.++|+++...+
T Consensus 109 ~~-~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 109 AN-NKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred CC-CCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 43 4689999999999987777777777888887788899999999999999999998764
No 102
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.93 E-value=5e-25 Score=149.47 Aligned_cols=132 Identities=16% Similarity=0.210 Sum_probs=103.6
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
.+.|. .+.||++..+. .+. ...+++++||++|++++..+++.+++++|++++|||++++.++.++..|+..+....
T Consensus 31 ~~~~~-~~~~t~g~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~ 106 (168)
T cd04149 31 LGQSV-TTIPTVGFNVE-TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDR 106 (168)
T ss_pred cCCCc-cccCCcccceE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCH
Confidence 34554 46889886553 222 345778889999999999999999999999999999999999999988887776543
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHH-----cCCcEEEeCCCCCCCHHHHHHHHHH
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQ-----LRIPYIECSAKVRINVDQAFHELVR 141 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~~~~~l~~ 141 (159)
...++|+++|+||+|+.+ .++.+++..+++. .+++++++||++|.|++++|++|.+
T Consensus 107 ~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 107 EMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred hhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 335689999999999864 3456666665421 2246899999999999999999865
No 103
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.93 E-value=1.1e-24 Score=147.92 Aligned_cols=137 Identities=16% Similarity=0.242 Sum_probs=108.9
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
++.|. .+.||++..+. .+.. ..+.+++||+||++++..++..+++++|++++|||+++++++.++..|+..+.+..
T Consensus 21 ~~~~~-~~~~T~~~~~~-~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~ 96 (169)
T cd04158 21 QDEFM-QPIPTIGFNVE-TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEK 96 (169)
T ss_pred cCCCC-CcCCcCceeEE-EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCh
Confidence 34454 47899886653 2333 45667889999999999999999999999999999999999999999998887654
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcC------CcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLR------IPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
...+.|+++++||+|+.+ .++.++...++...+ +.+++|||++|.|+.++|+++++.+...
T Consensus 97 ~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 97 ELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAA 163 (169)
T ss_pred hhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhc
Confidence 335689999999999864 356677766654322 2578999999999999999999877654
No 104
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.93 E-value=2.4e-24 Score=147.99 Aligned_cols=148 Identities=20% Similarity=0.304 Sum_probs=115.5
Q ss_pred cccccccccccccceE-EEEEEE-CCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 4 ESYFVTDYDPTIEDSY-TKQCVI-DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~-~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
.+.|.+. .||++..+ ...+.+ ++..+.+++|||+|++++..+++.+++++|++++|||+++++++..+..|+..+..
T Consensus 25 ~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~ 103 (183)
T cd04152 25 FNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITR 103 (183)
T ss_pred cCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHh
Confidence 4456544 68887444 444554 45678899999999999999999999999999999999999999999989888877
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHH--c----CCcEEEeCCCCCCCHHHHHHHHHHHHHhccccCCCCc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQ--L----RIPYIECSAKVRINVDQAFHELVRIVLLHTKQCKNST 154 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~----~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~ 154 (159)
.....++|+++|+||+|+.+ .++.++...++.. . +++++++||++|.|++++|+++.+.+.+.++..+..+
T Consensus 104 ~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~~~~~~~~~ 180 (183)
T cd04152 104 FSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKRRKMLRQQK 180 (183)
T ss_pred hhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHHHhhhhhhh
Confidence 65546789999999999864 2334444444321 1 2468999999999999999999999987776655444
No 105
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.93 E-value=2.7e-25 Score=149.51 Aligned_cols=132 Identities=17% Similarity=0.219 Sum_probs=100.7
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
.+.|. .+.||++..+. .+.. ..+.+++||++|++++..++..+++++|++++|||++++.+++.+..|+..+....
T Consensus 22 ~~~~~-~~~pt~g~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~ 97 (159)
T cd04150 22 LGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNED 97 (159)
T ss_pred cCCCc-ccCCCCCcceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcH
Confidence 56676 47899986553 2333 45778889999999999999999999999999999999999999998888776543
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHH-----HcCCcEEEeCCCCCCCHHHHHHHHHH
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNVAR-----QLRIPYIECSAKVRINVDQAFHELVR 141 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~~~l~~ 141 (159)
...+.|+++++||+|+.+. ...++...... ..++.++++||++|.|++++|++|.+
T Consensus 98 ~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 98 ELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 3346899999999998642 22333222211 11345789999999999999999864
No 106
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.92 E-value=5.4e-25 Score=150.25 Aligned_cols=134 Identities=16% Similarity=0.186 Sum_probs=102.2
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
.+.|. ++.||++..+. .+.. ..+.+++||+||++++..++..+++++|++|+|||++++++++.+..|+..+.+..
T Consensus 35 ~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~ 110 (175)
T smart00177 35 LGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNED 110 (175)
T ss_pred cCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCH
Confidence 45664 57899986653 2333 34678889999999999999999999999999999999999999998888876543
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHH-----HcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNVAR-----QLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
...++|+++|+||+|+.+.. +.++...... ...+.++++||++|.|++++|+||...+
T Consensus 111 ~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 111 ELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred hhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 33568999999999986432 2333222221 1123477899999999999999998764
No 107
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.92 E-value=4.1e-24 Score=148.59 Aligned_cols=129 Identities=19% Similarity=0.231 Sum_probs=107.9
Q ss_pred cccccccccccccccceE-EEEEEEC-----CeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSY-TKQCVID-----DIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKF 75 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~-~~~~~~~-----~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~ 75 (159)
++.+.|.+++.||++..+ .+.+.++ ++.+.++|||++|+++|..++..+++++|++|+|||+++++||+++..|
T Consensus 20 ~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W 99 (202)
T cd04102 20 ICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRW 99 (202)
T ss_pred HHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHH
Confidence 457789999999999655 5666663 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc------------------CCCCCcEEEEEeCCCCCCcCCCCHHH----HHHHHHHcCCcEEEeCCCCCC
Q psy11289 76 HRQILRVK------------------DRDEFPMLMVGNKADLDHQRQVSSMD----AQNVARQLRIPYIECSAKVRI 130 (159)
Q Consensus 76 ~~~i~~~~------------------~~~~~p~ivv~nK~D~~~~~~~~~~~----~~~~~~~~~~~~~~~sa~~~~ 130 (159)
+..+.+.. ...++|+++||||.|+.+++.++... ...+|++.|++.++.+++++.
T Consensus 100 ~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 100 SLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGR 176 (202)
T ss_pred HHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCcc
Confidence 99997742 12468999999999997766665543 346788999999999888654
No 108
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.92 E-value=7.1e-24 Score=145.58 Aligned_cols=137 Identities=18% Similarity=0.236 Sum_probs=103.2
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
.+.|.. +.||++..+. .+.. ..+.+++||++|++++..++..+++++|++|+|||+++++++..+..++..+....
T Consensus 39 ~~~~~~-~~~T~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~ 114 (182)
T PTZ00133 39 LGEVVT-TIPTIGFNVE-TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSED 114 (182)
T ss_pred cCCccc-cCCccccceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCH
Confidence 456654 7789886553 2333 45678889999999999999999999999999999999999999988887775543
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHH-----HcCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNVAR-----QLRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
...++|+++|+||.|+.+. .+.++...... ...+.++++||++|.|++++|+++.+.+.+.
T Consensus 115 ~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 115 ELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred hhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHHh
Confidence 3356899999999998642 23333222111 1123467999999999999999999887654
No 109
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.92 E-value=1.6e-23 Score=141.96 Aligned_cols=137 Identities=31% Similarity=0.568 Sum_probs=116.9
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH-HHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY-KFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~~ 81 (159)
+.+.|...+.||+.+.+...+..++..+.+++||+||++++......+++.+|++++|||++++.++..+. .|+..+..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~ 100 (171)
T cd00157 21 TTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRH 100 (171)
T ss_pred HhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 34566677889988877777788899999999999999988877888889999999999999999998876 57777776
Q ss_pred hcCCCCCcEEEEEeCCCCCCcC-----------CCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHH
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQR-----------QVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVR 141 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~ 141 (159)
.. .+.|+++|+||+|+.+.. .+..+++..++..+++ +++++||++|.|+.++|+++++
T Consensus 101 ~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 101 YC--PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hC--CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 54 479999999999986544 3457788888888887 8999999999999999999875
No 110
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.92 E-value=4.7e-23 Score=137.32 Aligned_cols=136 Identities=37% Similarity=0.631 Sum_probs=119.6
Q ss_pred cccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 4 ESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
.+.+...+.||.+..+ ...+..++..+.+.+||+||+..+.+.+..+++++|++++|+|+++++++..+..|+..+...
T Consensus 22 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~ 101 (159)
T cd00154 22 DGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEY 101 (159)
T ss_pred hCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 4566666788888655 677788888888999999999999999999999999999999999999999999999988886
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHH
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELV 140 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 140 (159)
.. .+.|+++++||+|+........++...++...+++++++||+++.|++++|+++.
T Consensus 102 ~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 102 AP-ENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred CC-CCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 53 4689999999999975567778888999998899999999999999999999986
No 111
>KOG4252|consensus
Probab=99.91 E-value=8e-26 Score=149.63 Aligned_cols=146 Identities=31% Similarity=0.432 Sum_probs=136.5
Q ss_pred cccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
||.|.|.++|.-|||..| ...+.++++-+.+.+||++|++.|......|+++|.+.++||+-+|..||+....|.+.+.
T Consensus 40 yCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~ 119 (246)
T KOG4252|consen 40 YCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQ 119 (246)
T ss_pred HhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHH
Confidence 688999999999999777 7888999888888999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcccc
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQ 149 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 149 (159)
... ..+|.++|-||+|+.+...+...++..+++.+.+.++.+|++...|+.++|..+++.+.+...+
T Consensus 120 ~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 120 KET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQ 186 (246)
T ss_pred HHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 876 6799999999999999999999999999999999999999999999999999999888766544
No 112
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.91 E-value=1.7e-22 Score=142.10 Aligned_cols=140 Identities=30% Similarity=0.522 Sum_probs=120.6
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|.+.|.||++..+ ...+..+++.+.+++||++|++++..++..++++++++++|||+++..++..+..|+..+..
T Consensus 30 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~ 109 (215)
T PTZ00132 30 LTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVR 109 (215)
T ss_pred HhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 46778899999999665 66667788899999999999999999999999999999999999999999999999999887
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
.. .+.|+++++||+|+.+ +.+.. +...+++..++.++++||++|.|++++|.++++.+...
T Consensus 110 ~~--~~~~i~lv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 110 VC--ENIPIVLVGNKVDVKD-RQVKA-RQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTND 170 (215)
T ss_pred hC--CCCCEEEEEECccCcc-ccCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhhc
Confidence 64 5789999999999864 33333 33467777889999999999999999999999988754
No 113
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.91 E-value=8.1e-23 Score=138.25 Aligned_cols=140 Identities=25% Similarity=0.323 Sum_probs=108.4
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH-HHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY-KFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~~ 81 (159)
..+.|.+.++++ ...+.....+++..+.+++||++|.+.+...+..+++++|++++|||++++++++.+. .|+..+..
T Consensus 21 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~ 99 (166)
T cd01893 21 VSEEFPENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRR 99 (166)
T ss_pred HhCcCCccCCCc-ccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 456777665544 4444555567788899999999999988777888889999999999999999999986 68777766
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCC--HHHHHHHHHHcC--CcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVS--SMDAQNVARQLR--IPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
.. .+.|+++|+||+|+.+..... .++...++..++ .++++|||++|.|++++|+.+...+.+
T Consensus 100 ~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 100 LG--VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred hC--CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhcC
Confidence 54 478999999999997644321 233334444443 379999999999999999999988754
No 114
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.91 E-value=5.2e-23 Score=140.05 Aligned_cols=130 Identities=20% Similarity=0.275 Sum_probs=102.8
Q ss_pred ccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCC
Q psy11289 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRD 86 (159)
Q Consensus 7 f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 86 (159)
+...+.||++.. ...+.+++ +.+++||+||++++..++..+++++|++++|||++++.++..+..|+..+.......
T Consensus 38 ~~~~~~~t~g~~-~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 114 (173)
T cd04154 38 DIDTISPTLGFQ-IKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLA 114 (173)
T ss_pred CCCCcCCccccc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhc
Confidence 445678888833 34445554 567789999999999999999999999999999999999999988888876543346
Q ss_pred CCcEEEEEeCCCCCCcCCCCHHHHHHHHH-----HcCCcEEEeCCCCCCCHHHHHHHHHH
Q psy11289 87 EFPMLMVGNKADLDHQRQVSSMDAQNVAR-----QLRIPYIECSAKVRINVDQAFHELVR 141 (159)
Q Consensus 87 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~~~l~~ 141 (159)
++|+++|+||+|+.+.. ..++...+.+ ..+++++++||++|.|++++|++++.
T Consensus 115 ~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 115 GATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred CCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 78999999999986533 3445555443 23568999999999999999999864
No 115
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.90 E-value=5.6e-23 Score=139.28 Aligned_cols=132 Identities=18% Similarity=0.305 Sum_probs=103.8
Q ss_pred ccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcC
Q psy11289 5 SYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD 84 (159)
Q Consensus 5 ~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~ 84 (159)
+.|...+.||++.. ...+..+ .+.+++||+||++++..++..+++++|++++|||++++.++..+..|+..+.+...
T Consensus 21 ~~~~~~~~~t~g~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~ 97 (167)
T cd04161 21 GEIPKKVAPTVGFT-PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPR 97 (167)
T ss_pred CCCCccccCcccce-EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCcc
Confidence 34778899999855 3344444 45677899999999999999999999999999999999999999999998877654
Q ss_pred CCCCcEEEEEeCCCCCCcCCCCHHHH------HHHHHHcC--CcEEEeCCCCC------CCHHHHHHHHHH
Q psy11289 85 RDEFPMLMVGNKADLDHQRQVSSMDA------QNVARQLR--IPYIECSAKVR------INVDQAFHELVR 141 (159)
Q Consensus 85 ~~~~p~ivv~nK~D~~~~~~~~~~~~------~~~~~~~~--~~~~~~sa~~~------~~i~~~~~~l~~ 141 (159)
..++|+++|+||+|+.+... ..+. ..+++..+ +.+++|||++| .|+.+.|+||..
T Consensus 98 ~~~~piliv~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 98 VSGKPILVLANKQDKKNALL--GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred ccCCcEEEEEeCCCCcCCCC--HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 45789999999999875442 2222 12232233 45788999998 899999999974
No 116
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.89 E-value=3.1e-22 Score=134.44 Aligned_cols=131 Identities=17% Similarity=0.216 Sum_probs=99.3
Q ss_pred ccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcC--
Q psy11289 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD-- 84 (159)
Q Consensus 7 f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-- 84 (159)
+.+.+.||++..+. .+. ...+.+++||+||++++..++..+++++|++++|+|++++.++..+..|+..+.+...
T Consensus 25 ~~~~~~~t~g~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~ 101 (162)
T cd04157 25 QSQIIVPTVGFNVE-SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIK 101 (162)
T ss_pred CcceecCccccceE-EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccc
Confidence 46778899985432 222 3356677899999999999999999999999999999999999998888888766432
Q ss_pred CCCCcEEEEEeCCCCCCcCCCCHHHHHHHHH-----HcCCcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 85 RDEFPMLMVGNKADLDHQRQVSSMDAQNVAR-----QLRIPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 85 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
..++|+++|+||+|+.+.. ..++...... ...++++++||++|.|++++|+++.++
T Consensus 102 ~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~~ 162 (162)
T cd04157 102 HRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQAQ 162 (162)
T ss_pred cCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhcC
Confidence 2478999999999986432 2222222211 112458999999999999999998753
No 117
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.89 E-value=1.4e-22 Score=136.03 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=96.2
Q ss_pred ccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcC
Q psy11289 5 SYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD 84 (159)
Q Consensus 5 ~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~ 84 (159)
+.+. .+.||++..+. .+. +..+++++||+||++++..++..+++++|++++|+|++++.++.....|+..+.+...
T Consensus 22 ~~~~-~~~~t~~~~~~-~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 97 (158)
T cd04151 22 GEVV-TTIPTIGFNVE-TVT--YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEE 97 (158)
T ss_pred CCCc-CcCCccCcCeE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchh
Confidence 3443 45788875542 223 3456778899999999999999999999999999999999988877776666554333
Q ss_pred CCCCcEEEEEeCCCCCCcCCCCHHHHHH-HH----HHcCCcEEEeCCCCCCCHHHHHHHHHH
Q psy11289 85 RDEFPMLMVGNKADLDHQRQVSSMDAQN-VA----RQLRIPYIECSAKVRINVDQAFHELVR 141 (159)
Q Consensus 85 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~----~~~~~~~~~~sa~~~~~i~~~~~~l~~ 141 (159)
..+.|+++|+||+|+.+.. ...+... +. ...+.+++++||++|.|++++|+++++
T Consensus 98 ~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 98 LKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred hcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 3578999999999986432 2222211 11 112346999999999999999999874
No 118
>PLN00023 GTP-binding protein; Provisional
Probab=99.89 E-value=5.7e-22 Score=144.79 Aligned_cols=118 Identities=15% Similarity=0.254 Sum_probs=99.7
Q ss_pred cccccccccccccccceE-EEEEEEC-------------CeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChh
Q psy11289 2 KIESYFVTDYDPTIEDSY-TKQCVID-------------DIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRN 67 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~-~~~~~~~-------------~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 67 (159)
++.+.|...+.||+|..+ .+.+.++ ++.+.++||||+|+++|..++..++++++++|+|||+++++
T Consensus 41 f~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~ 120 (334)
T PLN00023 41 IVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRR 120 (334)
T ss_pred HhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHH
Confidence 356788899999999665 6667764 35788999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcC-----------CCCCcEEEEEeCCCCCCcC---C---CCHHHHHHHHHHcCC
Q psy11289 68 SFEEIYKFHRQILRVKD-----------RDEFPMLMVGNKADLDHQR---Q---VSSMDAQNVARQLRI 119 (159)
Q Consensus 68 s~~~~~~~~~~i~~~~~-----------~~~~p~ivv~nK~D~~~~~---~---~~~~~~~~~~~~~~~ 119 (159)
+|+++..|++.+..... ..++|++|||||+|+...+ . +..++++++|++.|+
T Consensus 121 SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 121 TKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHHHHHHHHHcCC
Confidence 99999999999987632 1258999999999996543 2 357899999999884
No 119
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.89 E-value=1.5e-21 Score=133.01 Aligned_cols=132 Identities=20% Similarity=0.277 Sum_probs=100.9
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
.+.|.. +.||++..+. .+..+ .+++.+||+||++++...+..+++++|++++|||+++++++..+..|+..+.+..
T Consensus 37 ~~~~~~-~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~ 112 (174)
T cd04153 37 LGEVVH-TSPTIGSNVE-EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHE 112 (174)
T ss_pred cCCCCC-cCCccccceE-EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhch
Confidence 455654 6788886652 33444 4567779999999999999999999999999999999999998888887776654
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHH-HHHH----HHcCCcEEEeCCCCCCCHHHHHHHHHH
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDA-QNVA----RQLRIPYIECSAKVRINVDQAFHELVR 141 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~----~~~~~~~~~~sa~~~~~i~~~~~~l~~ 141 (159)
...++|+++++||+|+.+ ..+.++. ..+. +..+++++++||++|.|++++|++|.+
T Consensus 113 ~~~~~p~viv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 113 DLRKAVLLVLANKQDLKG--AMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred hhcCCCEEEEEECCCCCC--CCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 445789999999999865 2233332 2221 223467899999999999999999864
No 120
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.89 E-value=1.4e-21 Score=132.01 Aligned_cols=130 Identities=25% Similarity=0.349 Sum_probs=102.4
Q ss_pred ccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCC
Q psy11289 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRD 86 (159)
Q Consensus 7 f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 86 (159)
+...+.||++..+. .+.+++ ..+++||+||++.+..++..+++++|++++|+|+++++++..+..|+..+.+.....
T Consensus 30 ~~~~~~~t~~~~~~-~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~ 106 (167)
T cd04160 30 PPSKITPTVGLNIG-TIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALE 106 (167)
T ss_pred cccccCCccccceE-EEEECC--EEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhc
Confidence 34566788876652 344554 456679999999999999999999999999999999999999988888887754446
Q ss_pred CCcEEEEEeCCCCCCcCCCCHHHHHHHHHH-------cCCcEEEeCCCCCCCHHHHHHHHHH
Q psy11289 87 EFPMLMVGNKADLDHQRQVSSMDAQNVARQ-------LRIPYIECSAKVRINVDQAFHELVR 141 (159)
Q Consensus 87 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~sa~~~~~i~~~~~~l~~ 141 (159)
++|+++++||+|+... .+.++...+.+. .+++++++||++|.|+++++++|.+
T Consensus 107 ~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 107 GVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred CCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 7999999999998653 334444444332 2457999999999999999999875
No 121
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.88 E-value=7.2e-22 Score=132.55 Aligned_cols=133 Identities=21% Similarity=0.331 Sum_probs=100.4
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
++.|.. +.||++..+ ..+.. +..+.+++||++|++++...+..+++++|++++|+|++++.++..+..|+..+.+..
T Consensus 21 ~~~~~~-~~~t~~~~~-~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~ 97 (160)
T cd04156 21 HAELVT-TIPTVGFNV-EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNE 97 (160)
T ss_pred cCCccc-ccCccCcce-EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhch
Confidence 445543 468877543 23333 345778889999999999999999999999999999999999999998888887654
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHHHHH------HHHcCCcEEEeCCCCCCCHHHHHHHHHH
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNV------ARQLRIPYIECSAKVRINVDQAFHELVR 141 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 141 (159)
...+.|+++|+||+|+.+. .+.++.... +...++++++|||++|.|++++|+++.+
T Consensus 98 ~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 98 HIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred hhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 4357899999999998642 223333222 1123456899999999999999999864
No 122
>KOG0070|consensus
Probab=99.88 E-value=1.5e-21 Score=130.17 Aligned_cols=130 Identities=19% Similarity=0.252 Sum_probs=106.2
Q ss_pred cccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEE
Q psy11289 12 DPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPML 91 (159)
Q Consensus 12 ~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i 91 (159)
.||+|...+ .+++. ++++.+||++|+++++++|+.|+++.+++|||+|.+|++.+.+++.-+..+....+..+.|++
T Consensus 46 vPTiGfnVE-~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~ll 122 (181)
T KOG0070|consen 46 VPTIGFNVE-TVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLL 122 (181)
T ss_pred CCcccccee-EEEEc--ceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEE
Confidence 899997753 22333 566777999999999999999999999999999999999999999888888888776789999
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHc-----CCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 92 MVGNKADLDHQRQVSSMDAQNVARQL-----RIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 92 vv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
+.+||.|+++ ..+..+..+..... ...+..|||.+|+|+.+.++|+...+...
T Consensus 123 v~aNKqD~~~--als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 123 VFANKQDLPG--ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred EEechhhccc--cCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhcc
Confidence 9999999874 44445544443322 24478899999999999999999987543
No 123
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.87 E-value=5.3e-21 Score=131.91 Aligned_cols=129 Identities=22% Similarity=0.381 Sum_probs=103.2
Q ss_pred ccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCC
Q psy11289 9 TDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEF 88 (159)
Q Consensus 9 ~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 88 (159)
..+.||.+.. ...+.+++. .+++||+||++++...+..++++++++++|+|+++++++.....|+..+.+.....+.
T Consensus 45 ~~~~~T~~~~-~~~i~~~~~--~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~ 121 (190)
T cd00879 45 AQHVPTLHPT-SEELTIGNI--KFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANV 121 (190)
T ss_pred cccCCccCcc-eEEEEECCE--EEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCC
Confidence 3577787754 344566664 5667999999999889999999999999999999999999888888888765544678
Q ss_pred cEEEEEeCCCCCCcCCCCHHHHHHHHHH----------------cCCcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 89 PMLMVGNKADLDHQRQVSSMDAQNVARQ----------------LRIPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 89 p~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
|+++++||+|+.+ .+..++..++... ..+++++|||++|.|++++|+++.+.
T Consensus 122 pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 122 PFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred CEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 9999999999863 4556666665542 12458999999999999999999864
No 124
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.87 E-value=5.7e-21 Score=130.37 Aligned_cols=129 Identities=23% Similarity=0.396 Sum_probs=104.3
Q ss_pred cccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCc
Q psy11289 10 DYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFP 89 (159)
Q Consensus 10 ~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 89 (159)
.+.||+|... ..+..++.. +.+||++|+..+++.|+.|++++|++|||+|.++++.+.+....+..+.......++|
T Consensus 41 ~~~pT~g~~~-~~i~~~~~~--~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~p 117 (175)
T PF00025_consen 41 ETIPTIGFNI-EEIKYKGYS--LTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIP 117 (175)
T ss_dssp EEEEESSEEE-EEEEETTEE--EEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSE
T ss_pred ccCccccccc-ceeeeCcEE--EEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccce
Confidence 4788888654 334556655 5669999999999999999999999999999999999999998888887765556899
Q ss_pred EEEEEeCCCCCCcCCCCHHHHHHHHHH------cCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 90 MLMVGNKADLDHQRQVSSMDAQNVARQ------LRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 90 ~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
+++++||+|+++ ..+.++....... ..+.++.|||.+|+|+.+.++||.+++
T Consensus 118 iLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 118 ILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred EEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 999999999764 4555555544322 234589999999999999999999875
No 125
>KOG0075|consensus
Probab=99.87 E-value=5.7e-21 Score=122.75 Aligned_cols=133 Identities=21% Similarity=0.345 Sum_probs=108.9
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
.|.|.++..||.|.... +++...+++.+||+||+.+|+++|+.|.++++++++|+|+.|++.+.....-++.++...
T Consensus 42 ~g~~~edmiptvGfnmr---k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~ 118 (186)
T KOG0075|consen 42 RGQYLEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKP 118 (186)
T ss_pred eccchhhhcccccceeE---EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcch
Confidence 35778888999997754 345556666679999999999999999999999999999999999888887777887777
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcC--------CcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLR--------IPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
...++|++++|||.|+++ +++.. .+...+| +.+|.+|++...|++.+.+|++++..
T Consensus 119 ~l~gip~LVLGnK~d~~~--AL~~~---~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 119 SLTGIPLLVLGNKIDLPG--ALSKI---ALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred hhcCCcEEEecccccCcc--cccHH---HHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 778999999999999864 33333 2333333 56899999999999999999998754
No 126
>KOG0073|consensus
Probab=99.86 E-value=6.6e-20 Score=119.78 Aligned_cols=135 Identities=21% Similarity=0.296 Sum_probs=106.3
Q ss_pred ccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCC
Q psy11289 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRD 86 (159)
Q Consensus 7 f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 86 (159)
-++...||.|.. .+....++ +++++||++|+...++.|+.|+..+||+|+|+|.+|+..+++....+..++......
T Consensus 40 ~~~~i~pt~gf~-Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerla 116 (185)
T KOG0073|consen 40 DTDTISPTLGFQ-IKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLA 116 (185)
T ss_pred CccccCCcccee-eEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhc
Confidence 344556666544 33334444 456779999999999999999999999999999999999999887777777765566
Q ss_pred CCcEEEEEeCCCCCCcCCCCHHHH------HHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 87 EFPMLMVGNKADLDHQRQVSSMDA------QNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 87 ~~p~ivv~nK~D~~~~~~~~~~~~------~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
+.|+++++||.|++. .++.++. ..+++...++++.|||.+|+++.+.++|++..++++
T Consensus 117 G~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 117 GAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred CCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHHH
Confidence 889999999999873 2222222 334456678999999999999999999999999874
No 127
>KOG3883|consensus
Probab=99.85 E-value=2.9e-20 Score=120.33 Aligned_cols=153 Identities=25% Similarity=0.326 Sum_probs=128.8
Q ss_pred cccccccccccccccceEEEEEEE-CCeeEEEEEEeCCCcccc-hHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSYTKQCVI-DDIPARLDILDTAGQEEF-SAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQI 79 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~-~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i 79 (159)
|.+......+.||+.+.|...+.- .|-.-.+.|+||.|...+ ..+-..|+.-+|++++|||..|++||+.+..+-..|
T Consensus 31 yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~I 110 (198)
T KOG3883|consen 31 YGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEI 110 (198)
T ss_pred hccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 344555677899999998655554 455567888999999887 557788999999999999999999999887666667
Q ss_pred HhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccccCCCCc
Q psy11289 80 LRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQCKNST 154 (159)
Q Consensus 80 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~ 154 (159)
.+..+...+|++++|||+|+.+++.+..+-+..||+...++.+++++.+...+-+.|..+...+.+.+.+..-+.
T Consensus 111 dk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl~~pqskS~Fpl 185 (198)
T KOG3883|consen 111 DKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLASRLHQPQSKSTFPL 185 (198)
T ss_pred hhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHHHHHHHhccCCcccccCcc
Confidence 776666789999999999999999999999999999999999999999999999999999998887776554443
No 128
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.85 E-value=2.5e-20 Score=124.85 Aligned_cols=129 Identities=22% Similarity=0.314 Sum_probs=100.3
Q ss_pred cccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC
Q psy11289 8 VTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDE 87 (159)
Q Consensus 8 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 87 (159)
...+.||++..+ ..+.++ .+.+++||+||++++...+..+++++|++++|||+++++++..+..|+..+.......+
T Consensus 24 ~~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (158)
T cd00878 24 VVTTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKG 100 (158)
T ss_pred CCCCCCCcCcce-EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCC
Confidence 345677777443 223344 45677799999999999999999999999999999999999999988888877554468
Q ss_pred CcEEEEEeCCCCCCcCCCCHHHHHHHHHH-----cCCcEEEeCCCCCCCHHHHHHHHHH
Q psy11289 88 FPMLMVGNKADLDHQRQVSSMDAQNVARQ-----LRIPYIECSAKVRINVDQAFHELVR 141 (159)
Q Consensus 88 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~~~~~l~~ 141 (159)
.|+++++||+|+.... +.++..+.... ..++++++||++|.|++++|++|..
T Consensus 101 ~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 101 VPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred CcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 8999999999987533 23333333221 2357999999999999999999875
No 129
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.85 E-value=9.2e-20 Score=124.46 Aligned_cols=111 Identities=23% Similarity=0.316 Sum_probs=89.3
Q ss_pred CCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCC
Q psy11289 26 DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQV 105 (159)
Q Consensus 26 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 105 (159)
++..+.+++|||||++++...+..+++++|++|+|||+++..++.....|.... . .++|+++|+||+|+.+..
T Consensus 63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----~~~~iiiv~NK~Dl~~~~-- 135 (179)
T cd01890 63 DGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E----NNLEIIPVINKIDLPSAD-- 135 (179)
T ss_pred CCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H----cCCCEEEEEECCCCCcCC--
Confidence 667888999999999999999999999999999999999987776666554322 1 467999999999986422
Q ss_pred CHHHHHHHHHHcCCc---EEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 106 SSMDAQNVARQLRIP---YIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 106 ~~~~~~~~~~~~~~~---~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
..+...++++.++++ ++++||++|.|++++|+++.+.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 136 PERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 123345667777764 89999999999999999998765
No 130
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.85 E-value=6.6e-20 Score=126.06 Aligned_cols=128 Identities=18% Similarity=0.312 Sum_probs=98.6
Q ss_pred cccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCc
Q psy11289 10 DYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFP 89 (159)
Q Consensus 10 ~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 89 (159)
.+.||.+... ..+.+++ +++.+||+||++++..++..+++++|++++|+|+++++++.....|+..+.+.....++|
T Consensus 44 ~~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~p 120 (184)
T smart00178 44 QHQPTQHPTS-EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVP 120 (184)
T ss_pred ccCCccccce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCC
Confidence 4567766432 2334444 556779999999999999999999999999999999999999888888877644446789
Q ss_pred EEEEEeCCCCCCcCCCCHHHHHHHHHH------------cCCcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 90 MLMVGNKADLDHQRQVSSMDAQNVARQ------------LRIPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 90 ~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
+++|+||+|+.. .++.++......- ....+++|||++|.|++++++|+...
T Consensus 121 iliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 121 FLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 999999999863 4455555433211 12348999999999999999999764
No 131
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.85 E-value=3.5e-20 Score=123.52 Aligned_cols=133 Identities=23% Similarity=0.347 Sum_probs=103.1
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
.+.|..++.||++..+.. +..++ +.+.+||+||++++..++..+++++|++++|+|++++.++.....|+..+....
T Consensus 21 ~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~ 97 (159)
T cd04159 21 GGQFSEDTIPTVGFNMRK-VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKP 97 (159)
T ss_pred cCCCCcCccCCCCcceEE-EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcCh
Confidence 456888899999866532 33344 677889999999999999999999999999999999999988888888876654
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHHHHHH-----HHcCCcEEEeCCCCCCCHHHHHHHHHH
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNVA-----RQLRIPYIECSAKVRINVDQAFHELVR 141 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~~~~~l~~ 141 (159)
...++|+++|+||+|+.+... ..+..... ...+++++++||++|.|++++++++.+
T Consensus 98 ~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 98 SLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred hhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 445789999999999865332 22221111 112357899999999999999999875
No 132
>KOG0071|consensus
Probab=99.82 E-value=3.3e-19 Score=113.82 Aligned_cols=131 Identities=16% Similarity=0.239 Sum_probs=106.3
Q ss_pred cccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC
Q psy11289 8 VTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDE 87 (159)
Q Consensus 8 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 87 (159)
+.+..||+|.... ++.-+++++++||++|+++.+++|++|+.+.-++|||.|..+.+..+++..-+..+.+..+..+
T Consensus 42 ~~~~ipTvGFnve---tVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~ 118 (180)
T KOG0071|consen 42 SVTTIPTVGFNVE---TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRD 118 (180)
T ss_pred CcccccccceeEE---EEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhc
Confidence 3456788886643 3344567788899999999999999999999999999999999999999877778777777778
Q ss_pred CcEEEEEeCCCCCCcCCCCHHHHHHHHHHc-----CCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 88 FPMLMVGNKADLDHQRQVSSMDAQNVARQL-----RIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 88 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
.|+++.+||.|+++ +.+++++..+.+-. ..-+.++||.+|+|+.+.|.|++..+
T Consensus 119 ~~~LvlANkQDlp~--A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 119 AIILILANKQDLPD--AMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred ceEEEEecCccccc--ccCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhc
Confidence 99999999999875 44566666654322 23478999999999999999998765
No 133
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.81 E-value=1.6e-18 Score=117.77 Aligned_cols=125 Identities=21% Similarity=0.352 Sum_probs=95.7
Q ss_pred ccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCC
Q psy11289 9 TDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEF 88 (159)
Q Consensus 9 ~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 88 (159)
..+.||.|..+ ..+..++. .+.+||++|+.++...+..+++++|++++|+|+++..++.....|+..+.......++
T Consensus 40 ~~~~~t~g~~~-~~i~~~~~--~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (173)
T cd04155 40 SHITPTQGFNI-KTVQSDGF--KLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGV 116 (173)
T ss_pred cccCCCCCcce-EEEEECCE--EEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCC
Confidence 34677777443 34455554 4566999999998888999999999999999999999999888887777665444578
Q ss_pred cEEEEEeCCCCCCcCCCCHHHHHHHHHHcCC--------cEEEeCCCCCCCHHHHHHHHHH
Q psy11289 89 PMLMVGNKADLDHQRQVSSMDAQNVARQLRI--------PYIECSAKVRINVDQAFHELVR 141 (159)
Q Consensus 89 p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~sa~~~~~i~~~~~~l~~ 141 (159)
|+++++||+|+.+... . ..+.+.+++ +++++||++|.|++++|+|+++
T Consensus 117 p~ivv~nK~D~~~~~~--~---~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 117 PVLVFANKQDLATAAP--A---EEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CEEEEEECCCCccCCC--H---HHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 9999999999864321 2 233344442 3789999999999999999975
No 134
>KOG1673|consensus
Probab=99.80 E-value=2.8e-19 Score=116.06 Aligned_cols=142 Identities=23% Similarity=0.348 Sum_probs=120.3
Q ss_pred cccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
|+++.+.+.+..|.|..+ .+.+.+.|..+.+.+||.+|++++..+.+...+++-+++|+||++.++++..+..|+.+..
T Consensus 40 YV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr 119 (205)
T KOG1673|consen 40 YVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQAR 119 (205)
T ss_pred hhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHh
Confidence 567888889999999777 8999999999999999999999998888888899999999999999999999999999988
Q ss_pred hhcCCCCCcEEEEEeCCCCCC----c--CCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 81 RVKDRDEFPMLMVGNKADLDH----Q--RQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~----~--~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
..+. ..-.|+||+|.|+-- + +.+ ..+++.+|+..+.+.+.||+....|+..+|.-+...+...
T Consensus 120 ~~Nk--tAiPilvGTKyD~fi~lp~e~Q~~I-~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFnL 188 (205)
T KOG1673|consen 120 GLNK--TAIPILVGTKYDLFIDLPPELQETI-SRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFNL 188 (205)
T ss_pred ccCC--ccceEEeccchHhhhcCCHHHHHHH-HHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhCC
Confidence 7753 234466799999631 1 112 2356788999999999999999999999999988777543
No 135
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.80 E-value=6.1e-18 Score=119.03 Aligned_cols=144 Identities=32% Similarity=0.441 Sum_probs=113.6
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCCh-hhHHHHHHHHHHHH
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR-NSFEEIYKFHRQIL 80 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~-~s~~~~~~~~~~i~ 80 (159)
.++.|...++||++..+ .......+..+++.+|||+|+++++.+++.|+.+++++++|||.++. .+++....|...+.
T Consensus 26 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~ 105 (219)
T COG1100 26 VGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELR 105 (219)
T ss_pred hcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHH
Confidence 46788899999999777 56666666689999999999999999999999999999999999994 45555668988887
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcC------------CCCHHHHHHHHHHc---CCcEEEeCCC--CCCCHHHHHHHHHHHH
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQR------------QVSSMDAQNVARQL---RIPYIECSAK--VRINVDQAFHELVRIV 143 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~sa~--~~~~i~~~~~~l~~~~ 143 (159)
.... .+.|+++++||+|+.... ..........+... ...++++|++ .+.++.++|..++..+
T Consensus 106 ~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~ 184 (219)
T COG1100 106 ELAP-DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKL 184 (219)
T ss_pred HhCC-CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHH
Confidence 7653 468999999999997653 22232323333222 2338999999 9999999999999988
Q ss_pred Hhcc
Q psy11289 144 LLHT 147 (159)
Q Consensus 144 ~~~~ 147 (159)
....
T Consensus 185 ~~~~ 188 (219)
T COG1100 185 LEEI 188 (219)
T ss_pred HHhh
Confidence 6543
No 136
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=6.2e-18 Score=125.66 Aligned_cols=137 Identities=17% Similarity=0.145 Sum_probs=99.8
Q ss_pred cccccccccceEEEEEEE-CCeeEEEEEEeCCCcccc----hHHHHH---HhhcCCEEEEEEECCChhhHHHHHHHHHHH
Q psy11289 8 VTDYDPTIEDSYTKQCVI-DDIPARLDILDTAGQEEF----SAMREQ---YMRSGEGFLLVFSVTDRNSFEEIYKFHRQI 79 (159)
Q Consensus 8 ~~~~~pt~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~----~~~~~~---~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i 79 (159)
..+|+.|+-......+.+ ++.. +.+||+||...- ..+... .++.++++++|+|++++++++++..|..++
T Consensus 185 va~ypfTT~~p~~G~v~~~~~~~--~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL 262 (335)
T PRK12299 185 IADYPFTTLHPNLGVVRVDDYKS--FVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNEL 262 (335)
T ss_pred cCCCCCceeCceEEEEEeCCCcE--EEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHH
Confidence 345665655444444555 3445 455999998431 123333 456799999999999988899999999888
Q ss_pred HhhcC-CCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 80 LRVKD-RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 80 ~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
..+.. ..++|+++|+||+|+.+...+..+....+++..+.+++++||+++.|++++++++.+.+.+.
T Consensus 263 ~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 263 EKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEEA 330 (335)
T ss_pred HHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHhh
Confidence 77643 24689999999999876554444445555566678999999999999999999999887653
No 137
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.78 E-value=3.9e-17 Score=107.33 Aligned_cols=133 Identities=42% Similarity=0.708 Sum_probs=102.9
Q ss_pred cccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC
Q psy11289 8 VTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDE 87 (159)
Q Consensus 8 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 87 (159)
.....+|..+.+.......+....+.+||++|...+...+..+++.+|++++|+|++++.++..+..|...........+
T Consensus 23 ~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (157)
T cd00882 23 PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGEN 102 (157)
T ss_pred CcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCC
Confidence 34555666444466667677778889999999998888888899999999999999999999998877434334334468
Q ss_pred CcEEEEEeCCCCCCcCCCCHHH-HHHHHHHcCCcEEEeCCCCCCCHHHHHHHHH
Q psy11289 88 FPMLMVGNKADLDHQRQVSSMD-AQNVARQLRIPYIECSAKVRINVDQAFHELV 140 (159)
Q Consensus 88 ~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 140 (159)
.|+++++||+|+.......... ........+++++++|+.++.|+.++++++.
T Consensus 103 ~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 103 IPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 9999999999986544433322 3444555678899999999999999999875
No 138
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.78 E-value=1.2e-17 Score=112.92 Aligned_cols=111 Identities=17% Similarity=0.201 Sum_probs=80.2
Q ss_pred eEEEEEEeCCCcccch---------HHHHHHhhcCCEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy11289 29 PARLDILDTAGQEEFS---------AMREQYMRSGEGFLLVFSVTDRNS--FEEIYKFHRQILRVKDRDEFPMLMVGNKA 97 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~---------~~~~~~~~~~~~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 97 (159)
.+.+++|||||+.... .........+|++++|+|+++..+ ++....|+..+.... .+.|+++|+||+
T Consensus 46 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~ 123 (168)
T cd01897 46 YLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKI 123 (168)
T ss_pred ceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEcc
Confidence 3567779999984210 111112234689999999998765 356667887776543 478999999999
Q ss_pred CCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 98 DLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 98 D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
|+.+...+.. ...++...+.+++++||++|.|++++|+++.+.+
T Consensus 124 Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 124 DLLTFEDLSE--IEEEEELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred ccCchhhHHH--HHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 9876444332 4455555668899999999999999999998875
No 139
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.78 E-value=1e-17 Score=113.32 Aligned_cols=112 Identities=17% Similarity=0.219 Sum_probs=84.3
Q ss_pred EEEEEEeCCCcc----cchHHHHHH---hhcCCEEEEEEECCCh-hhHHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCC
Q psy11289 30 ARLDILDTAGQE----EFSAMREQY---MRSGEGFLLVFSVTDR-NSFEEIYKFHRQILRVKD-RDEFPMLMVGNKADLD 100 (159)
Q Consensus 30 ~~~~l~D~~g~~----~~~~~~~~~---~~~~~~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~~ 100 (159)
..+.+|||||+. .+..+...+ ++.+|++++|+|++++ ++++.+..|.+.+..... ..++|+++|+||+|+.
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 127 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL 127 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence 356779999973 222233333 3469999999999999 899999999888876542 2368999999999986
Q ss_pred CcCCCCHHHHHHHHHHc-CCcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 101 HQRQVSSMDAQNVARQL-RIPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 101 ~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
+.... .+....+.... +.+++++||+++.|++++|+++.+.
T Consensus 128 ~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 128 DEEEL-FELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred Cchhh-HHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 65444 33344555553 6889999999999999999999864
No 140
>KOG4423|consensus
Probab=99.77 E-value=9.1e-21 Score=126.31 Aligned_cols=147 Identities=27% Similarity=0.415 Sum_probs=123.0
Q ss_pred cccccccccccccccceE-EEEEEECCe-eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDSY-TKQCVIDDI-PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQI 79 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~~-~~~~~~~~~-~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i 79 (159)
|++..|.-.|-.|||..| .+....+++ .++++|||+.|+++|..+...|++.+++..+|||+++.-+|+....|.+.+
T Consensus 45 yv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdl 124 (229)
T KOG4423|consen 45 YVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDL 124 (229)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhc
Confidence 456778888999999777 777777764 578999999999999999999999999999999999999999999999887
Q ss_pred HhhcCC---CCCcEEEEEeCCCCCCcCCCC-HHHHHHHHHHcCCc-EEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 80 LRVKDR---DEFPMLMVGNKADLDHQRQVS-SMDAQNVARQLRIP-YIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 80 ~~~~~~---~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
.....+ ...|+++.+||+|........ .....++++++|+. ++++|++.+.|++|+-+.+++.++..-.
T Consensus 125 dsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvnd~ 198 (229)
T KOG4423|consen 125 DSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVNDE 198 (229)
T ss_pred cCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhhcc
Confidence 665543 357899999999985432221 35667888899976 9999999999999999999998886653
No 141
>KOG0076|consensus
Probab=99.77 E-value=2.5e-18 Score=113.48 Aligned_cols=131 Identities=23% Similarity=0.360 Sum_probs=103.8
Q ss_pred ccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcE
Q psy11289 11 YDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90 (159)
Q Consensus 11 ~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ 90 (159)
-.||+|-.. .++.+++.. +.+||.+|++..+++|..|+..+|++|+++|+++++.|+....-++.+.......++|+
T Consensus 53 i~~tvgLni-g~i~v~~~~--l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~ 129 (197)
T KOG0076|consen 53 ITPTVGLNI-GTIEVCNAP--LSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPV 129 (197)
T ss_pred eecccceee-cceeeccce--eEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 356666443 334445444 45699999999999999999999999999999999999998887888777766689999
Q ss_pred EEEEeCCCCCCcCCCCHHHHHHHH---HHc---CCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 91 LMVGNKADLDHQRQVSSMDAQNVA---RQL---RIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 91 ivv~nK~D~~~~~~~~~~~~~~~~---~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
++.+||.|+.+.. ..++..... +.. .+++.+|||.+|.||.+..+|++..+.++
T Consensus 130 L~lankqd~q~~~--~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 130 LVLANKQDLQNAM--EAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhcchhhhhhhh--hHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 9999999987533 233443333 333 36799999999999999999999988776
No 142
>KOG0072|consensus
Probab=99.77 E-value=2.7e-18 Score=110.17 Aligned_cols=133 Identities=16% Similarity=0.164 Sum_probs=103.0
Q ss_pred ccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCC
Q psy11289 9 TDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEF 88 (159)
Q Consensus 9 ~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 88 (159)
....||+|.... .+ .-++.++++||.+|+-..++.|+.|+.+.+++|+|+|.+|.+..--....+..+++..+..+.
T Consensus 44 vttkPtigfnve-~v--~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a 120 (182)
T KOG0072|consen 44 VTTKPTIGFNVE-TV--PYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHA 120 (182)
T ss_pred cccCCCCCcCcc-cc--ccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCc
Confidence 455678876642 22 236677888999999999999999999999999999999999887777777778887777788
Q ss_pred cEEEEEeCCCCCCcCCCCHHHHH-----HHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 89 PMLMVGNKADLDHQRQVSSMDAQ-----NVARQLRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 89 p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
-+++++||.|.+. ..+..++. +..+..-+.++++||.+|.|++++++|+.+.+.++
T Consensus 121 ~llv~anKqD~~~--~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 121 KLLVFANKQDYSG--ALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred eEEEEeccccchh--hhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhcc
Confidence 8899999999764 22233322 12222236699999999999999999999987654
No 143
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.77 E-value=2.6e-17 Score=110.49 Aligned_cols=112 Identities=18% Similarity=0.134 Sum_probs=77.4
Q ss_pred EEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy11289 22 QCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD---RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKAD 98 (159)
Q Consensus 22 ~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 98 (159)
.+.+++ ...+++|||||++++......+++++|++++|+|+++ +++.+.+. .+ +.. ...|+++++||+|
T Consensus 44 ~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~----~~-~~~--~~~~~ilv~NK~D 115 (164)
T cd04171 44 YLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLE----IL-ELL--GIKRGLVVLTKAD 115 (164)
T ss_pred EEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHH----HH-HHh--CCCcEEEEEECcc
Confidence 344442 2467779999999987767777889999999999987 44444332 11 211 2248999999999
Q ss_pred CCCcCCC--CHHHHHHHHHH---cCCcEEEeCCCCCCCHHHHHHHHHH
Q psy11289 99 LDHQRQV--SSMDAQNVARQ---LRIPYIECSAKVRINVDQAFHELVR 141 (159)
Q Consensus 99 ~~~~~~~--~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~ 141 (159)
+.+.... ..++..+..+. .+.+++++||++|.|++++++.+.+
T Consensus 116 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 116 LVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 8653211 12233333333 3578999999999999999998754
No 144
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.76 E-value=7.5e-17 Score=106.96 Aligned_cols=133 Identities=33% Similarity=0.493 Sum_probs=104.2
Q ss_pred ccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCCh-hhHHHHH-HHHHHHHh
Q psy11289 5 SYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR-NSFEEIY-KFHRQILR 81 (159)
Q Consensus 5 ~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~-~s~~~~~-~~~~~i~~ 81 (159)
+.+...+.|+++..+ ...+..++..+.+.+||+||+.++..++..+.+.+++++.++|.... .++.... .|...+..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~ 103 (161)
T TIGR00231 24 NKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIH 103 (161)
T ss_pred CCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHH
Confidence 346667777887555 55577888778888999999999999999999999999999999887 7776665 77777777
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHH
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHEL 139 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 139 (159)
.... +.|+++++||.|+.... ........+......+++++||++|.|+.++|+++
T Consensus 104 ~~~~-~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 104 HAES-NVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred hccc-CCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 6542 78999999999986543 33333334444445789999999999999999886
No 145
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.76 E-value=4.9e-17 Score=108.61 Aligned_cols=123 Identities=15% Similarity=0.236 Sum_probs=90.4
Q ss_pred ccccccceEEEEEEECCeeEEEEEEeCCCcccchH------HHHHHhh--cCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 11 YDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSA------MREQYMR--SGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 11 ~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~~--~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+++++-+.....+.+++.. +.+|||||+..+.. ++..++. ++|++++|+|++++++.. .|...+.+
T Consensus 26 ~~~~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~- 99 (158)
T cd01879 26 WPGVTVEKKEGRFKLGGKE--IEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL---YLTLQLLE- 99 (158)
T ss_pred CCCcccccceEEEeeCCeE--EEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH---HHHHHHHH-
Confidence 3333334445667777754 56799999987653 4566664 999999999999865533 34444433
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
.++|+++|+||+|+.+...+.. ....++..++++++++||.+|.|+.++++++...+
T Consensus 100 ---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 100 ---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred ---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence 3689999999999976554443 34577777899999999999999999999998764
No 146
>KOG0096|consensus
Probab=99.75 E-value=1.7e-18 Score=115.79 Aligned_cols=139 Identities=26% Similarity=0.470 Sum_probs=115.2
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|..+|.||+|... .-...-|...+++..|||.|++++..+...|+=.+.+.|++||++..-++.++.+|...+.+
T Consensus 31 ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~r 110 (216)
T KOG0096|consen 31 LTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVR 110 (216)
T ss_pred hcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHH
Confidence 36899999999999665 43334355579999999999999998888888888999999999999999999999999999
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
.+ .++|++++|||.|..... .......+-+..++.+++.||+++-|....|-|+.+.+..
T Consensus 111 v~--~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~G 170 (216)
T KOG0096|consen 111 VR--ENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKLTG 170 (216)
T ss_pred Hh--cCCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHHhhhhcC
Confidence 87 679999999999975433 1233344555667889999999999999999999987653
No 147
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.75 E-value=2.7e-17 Score=113.96 Aligned_cols=128 Identities=19% Similarity=0.228 Sum_probs=86.2
Q ss_pred cccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy11289 14 TIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLM 92 (159)
Q Consensus 14 t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~iv 92 (159)
+.|..+ .....++...+.+++|||||+++|...+..+++++|++++|||+++.. +.....|+..+.. .++|+++
T Consensus 48 ~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~ii 122 (194)
T cd01891 48 ERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIV 122 (194)
T ss_pred hcccccccceeEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEE
Confidence 344333 444555556677888999999999999999999999999999998742 2233334443322 4689999
Q ss_pred EEeCCCCCCcCCC-CHHHHHHHHH-------HcCCcEEEeCCCCCCCHHHH------HHHHHHHHHhc
Q psy11289 93 VGNKADLDHQRQV-SSMDAQNVAR-------QLRIPYIECSAKVRINVDQA------FHELVRIVLLH 146 (159)
Q Consensus 93 v~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~~~~~sa~~~~~i~~~------~~~l~~~~~~~ 146 (159)
|+||+|+.+.+.. ..++...+.. ..+++++++||++|.|+.+. +++++..+...
T Consensus 123 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~ 190 (194)
T cd01891 123 VINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEH 190 (194)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhccccccccccchhhHHHHHHHHHhc
Confidence 9999998643321 1233444442 23678999999999876433 55555555443
No 148
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=2.6e-17 Score=127.86 Aligned_cols=140 Identities=17% Similarity=0.178 Sum_probs=96.4
Q ss_pred ccccccccccceEEEEEEECCeeEEEEEEeCCCcc----------cchHHH-HHHhhcCCEEEEEEECCChhhHHHHHHH
Q psy11289 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQE----------EFSAMR-EQYMRSGEGFLLVFSVTDRNSFEEIYKF 75 (159)
Q Consensus 7 f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~-~~~~~~~~~ii~v~d~~~~~s~~~~~~~ 75 (159)
.+..+++|+.+.+...+..++..+. +|||||.. .|..+. ..+++++|++++|+|++++.++.++. +
T Consensus 238 ~~s~~~gtT~d~~~~~~~~~~~~~~--l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~ 314 (472)
T PRK03003 238 VVDDVAGTTVDPVDSLIELGGKTWR--FVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-V 314 (472)
T ss_pred cccCCCCccCCcceEEEEECCEEEE--EEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-H
Confidence 3556667776777777888888764 69999963 333332 23578999999999999988887763 4
Q ss_pred HHHHHhhcCCCCCcEEEEEeCCCCCCcCCCC--HHHHH-HHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccccCCC
Q psy11289 76 HRQILRVKDRDEFPMLMVGNKADLDHQRQVS--SMDAQ-NVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQCKN 152 (159)
Q Consensus 76 ~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~-~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~ 152 (159)
+..+.. .++|+++|+||+|+.+..... ..+.. .++....++++++||++|.|++++|+.+.+.+.........
T Consensus 315 ~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t 390 (472)
T PRK03003 315 LSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWDTRIPT 390 (472)
T ss_pred HHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCH
Confidence 444433 568999999999986422110 11111 12222237899999999999999999999887655544433
Q ss_pred C
Q psy11289 153 S 153 (159)
Q Consensus 153 ~ 153 (159)
+
T Consensus 391 ~ 391 (472)
T PRK03003 391 G 391 (472)
T ss_pred H
Confidence 3
No 149
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.74 E-value=1.3e-16 Score=126.53 Aligned_cols=115 Identities=20% Similarity=0.278 Sum_probs=91.3
Q ss_pred CCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCC
Q psy11289 26 DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQV 105 (159)
Q Consensus 26 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 105 (159)
++..+.++||||||+.+|...+..+++.+|++|+|+|+++..+.+....|...+ . .++|+++|+||+|+.+..
T Consensus 66 ~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~-- 138 (595)
T TIGR01393 66 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSAD-- 138 (595)
T ss_pred CCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccC--
Confidence 567789999999999999999999999999999999999977766666554332 1 467999999999986422
Q ss_pred CHHHHHHHHHHcCCc---EEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 106 SSMDAQNVARQLRIP---YIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 106 ~~~~~~~~~~~~~~~---~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
..+...++++.++++ ++++||++|.|++++|+++.+.+....
T Consensus 139 ~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 139 PERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred HHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 123345666667764 899999999999999999998775443
No 150
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.73 E-value=1.8e-16 Score=121.87 Aligned_cols=128 Identities=17% Similarity=0.216 Sum_probs=99.2
Q ss_pred ccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHH--------HHHHhhcCCEEEEEEECCChhhHHHHHHHH
Q psy11289 5 SYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAM--------REQYMRSGEGFLLVFSVTDRNSFEEIYKFH 76 (159)
Q Consensus 5 ~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~ 76 (159)
..++.++++|+.+.+...+.++|.++ .+|||||...+... ...+++++|++++|||++++.+++.. |+
T Consensus 228 ~aivs~~pgtTrd~~~~~i~~~g~~v--~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l 303 (442)
T TIGR00450 228 RAIVSDIKGTTRDVVEGDFELNGILI--KLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LI 303 (442)
T ss_pred CcccCCCCCcEEEEEEEEEEECCEEE--EEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HH
Confidence 34677888888777788888888775 56999999655432 23567899999999999998887765 66
Q ss_pred HHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 77 RQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 77 ~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
..+.. .++|+++|+||+|+.+. +...+++.++++++++||++ .|+.++|+.+.+.+.+..
T Consensus 304 ~~~~~----~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 304 IDLNK----SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAFY 363 (442)
T ss_pred HHHhh----CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence 55532 46899999999998643 22355667788999999998 699999999998887653
No 151
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.73 E-value=2.9e-16 Score=116.65 Aligned_cols=132 Identities=18% Similarity=0.228 Sum_probs=93.7
Q ss_pred ccccccccceEEEEEEECC-eeEEEEEEeCCCcccc----hHHHHHH---hhcCCEEEEEEECCCh---hhHHHHHHHHH
Q psy11289 9 TDYDPTIEDSYTKQCVIDD-IPARLDILDTAGQEEF----SAMREQY---MRSGEGFLLVFSVTDR---NSFEEIYKFHR 77 (159)
Q Consensus 9 ~~~~pt~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~----~~~~~~~---~~~~~~ii~v~d~~~~---~s~~~~~~~~~ 77 (159)
.+|+.|+-......+.+++ .. +.+||+||.... ..+...+ ++.++++++|+|+++. ++++.+..|.+
T Consensus 185 a~y~fTT~~p~ig~v~~~~~~~--~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~ 262 (329)
T TIGR02729 185 ADYPFTTLVPNLGVVRVDDGRS--FVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRN 262 (329)
T ss_pred cCCCCCccCCEEEEEEeCCceE--EEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHH
Confidence 3455554433334445554 44 566999998532 1233344 4579999999999987 67888888888
Q ss_pred HHHhhcC-CCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 78 QILRVKD-RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 78 ~i~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
++..+.. ..++|+++|+||+|+.+.... .+....+++.++.+++++||+++.|++++++++.+.+
T Consensus 263 EL~~~~~~l~~kp~IIV~NK~DL~~~~~~-~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 263 ELKKYSPELAEKPRIVVLNKIDLLDEEEL-AELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred HHHHhhhhhccCCEEEEEeCccCCChHHH-HHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 7776642 246899999999998654322 3344556667788999999999999999999998754
No 152
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.73 E-value=9.7e-17 Score=108.96 Aligned_cols=133 Identities=17% Similarity=0.210 Sum_probs=92.1
Q ss_pred cccccccccceEEEEEEEC-CeeEEEEEEeCCCccc----chHH---HHHHhhcCCEEEEEEECCCh------hhHHHHH
Q psy11289 8 VTDYDPTIEDSYTKQCVID-DIPARLDILDTAGQEE----FSAM---REQYMRSGEGFLLVFSVTDR------NSFEEIY 73 (159)
Q Consensus 8 ~~~~~pt~~~~~~~~~~~~-~~~~~~~l~D~~g~~~----~~~~---~~~~~~~~~~ii~v~d~~~~------~s~~~~~ 73 (159)
..++++|+.+.....+.++ +.+ +.+||+||... ...+ ...+++++|++++|+|++++ .++.++.
T Consensus 23 ~~~~~~~t~~~~~~~~~~~~~~~--~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~ 100 (176)
T cd01881 23 VANYPFTTLEPNLGVVEVPDGAR--IQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYE 100 (176)
T ss_pred ccCCCceeecCcceEEEcCCCCe--EEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHH
Confidence 4455555544433445555 555 56699999732 1122 23456789999999999998 5788888
Q ss_pred HHHHHHHhhcCC------CCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 74 KFHRQILRVKDR------DEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 74 ~~~~~i~~~~~~------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
.|...+...... .+.|+++|+||+|+..............+...+.+++++||+++.|++++++++...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 101 ILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred HHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 887777655321 468999999999987544433322233444456789999999999999999998764
No 153
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.72 E-value=4e-17 Score=107.52 Aligned_cols=98 Identities=22% Similarity=0.173 Sum_probs=75.2
Q ss_pred EEEeCCCcc-----cchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCH
Q psy11289 33 DILDTAGQE-----EFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSS 107 (159)
Q Consensus 33 ~l~D~~g~~-----~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 107 (159)
.+|||||+. .+..+.. .++++|++++|||++++.++.. ..|... . ..|+++|+||+|+.+ +....
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~----~---~~p~ilv~NK~Dl~~-~~~~~ 107 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASI----F---VKPVIGLVTKIDLAE-ADVDI 107 (142)
T ss_pred eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHh----c---cCCeEEEEEeeccCC-cccCH
Confidence 469999982 3444433 4789999999999999998755 344322 1 249999999999865 34456
Q ss_pred HHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHH
Q psy11289 108 MDAQNVARQLRI-PYIECSAKVRINVDQAFHELV 140 (159)
Q Consensus 108 ~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~ 140 (159)
++..++++..+. +++++||++|.|++++|+++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 108 ERAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred HHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 677788888776 799999999999999999874
No 154
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.71 E-value=7.5e-16 Score=102.60 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=86.2
Q ss_pred ccccccccccceEEEEEEECCeeEEEEEEeCCCcccchH--------HHHHHhhcCCEEEEEEECCChhhHHHHHHHHHH
Q psy11289 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSA--------MREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQ 78 (159)
Q Consensus 7 f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~ 78 (159)
+.+.+++++.+........++.. +.+|||||...+.. .+...++++|++++|+|..++.+.... .+...
T Consensus 24 ~~~~~~~~t~~~~~~~~~~~~~~--~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~ 100 (157)
T cd01894 24 IVEDTPGVTRDRIYGEAEWGGRE--FILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE-EIAKY 100 (157)
T ss_pred eecCCCCceeCceeEEEEECCeE--EEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH-HHHHH
Confidence 45566666665555566666654 56699999987543 334567889999999999876544332 12222
Q ss_pred HHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 79 ILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 79 i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
+.. .+.|+++|+||+|+.+.... ......+++ +++++|+++|.|++++|++++++
T Consensus 101 ~~~----~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 101 LRK----SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred HHh----cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 222 35899999999998653221 233445666 78999999999999999999875
No 155
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.70 E-value=4.1e-16 Score=120.00 Aligned_cols=133 Identities=20% Similarity=0.205 Sum_probs=91.1
Q ss_pred ccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHH-----------HHHHhhcCCEEEEEEECCChhhHHHHHHH
Q psy11289 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAM-----------REQYMRSGEGFLLVFSVTDRNSFEEIYKF 75 (159)
Q Consensus 7 f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----------~~~~~~~~~~ii~v~d~~~~~s~~~~~~~ 75 (159)
....+++|+.+.+...+..++.. +.+|||||..++... ...+++.+|++++|+|++++.+..+.. +
T Consensus 199 ~~~~~~gtt~~~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~ 275 (429)
T TIGR03594 199 IVSDIAGTTRDSIDIPFERNGKK--YLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-I 275 (429)
T ss_pred ecCCCCCceECcEeEEEEECCcE--EEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-H
Confidence 45566777777766667777775 455999997554321 123578999999999999987776643 3
Q ss_pred HHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHH-HHHHHHc----CCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 76 HRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDA-QNVARQL----RIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 76 ~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~----~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
+..+.. .++|+++|+||+|+.+.. ...++. ..+...+ +++++++||++|.|++++|+++...+....
T Consensus 276 ~~~~~~----~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~ 347 (429)
T TIGR03594 276 AGLILE----AGKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENAN 347 (429)
T ss_pred HHHHHH----cCCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 333332 468999999999986211 111122 2222222 478999999999999999999998776543
No 156
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.70 E-value=4.7e-16 Score=108.45 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=82.1
Q ss_pred EEEEECCeeEEEEEEeCCCcccc---------hHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEE
Q psy11289 21 KQCVIDDIPARLDILDTAGQEEF---------SAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPML 91 (159)
Q Consensus 21 ~~~~~~~~~~~~~l~D~~g~~~~---------~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i 91 (159)
..+..++. ..+.+|||||..+. ...+ ..+.++|++++|+|++++.++.....|.+.+.... ..+.|++
T Consensus 81 ~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~-~~~~~vi 157 (204)
T cd01878 81 RRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELG-AEDIPMI 157 (204)
T ss_pred EEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcC-cCCCCEE
Confidence 33444443 24666999998321 1111 23568999999999999999888777776665543 2468999
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 92 MVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 92 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
+|+||+|+.+.... ...+...+.+++++||++|.|+.++++++...
T Consensus 158 iV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 158 LVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred EEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 99999998653322 13444556789999999999999999999765
No 157
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.69 E-value=1.7e-15 Score=102.19 Aligned_cols=110 Identities=17% Similarity=0.229 Sum_probs=76.0
Q ss_pred eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCC-H
Q psy11289 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVS-S 107 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~-~ 107 (159)
...+.+|||||+..+..++..++..+|++++|+|+++........ .+..+.. .++|+++|+||+|+.+...-. .
T Consensus 49 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~-~~~~~~~----~~~p~ivv~NK~Dl~~~~~~~~~ 123 (168)
T cd01887 49 IPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIE-AIKLAKA----ANVPFIVALNKIDKPNANPERVK 123 (168)
T ss_pred cceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHH-HHHHHHH----cCCCEEEEEEceecccccHHHHH
Confidence 456677999999999888888999999999999998843222111 1122222 467999999999986422100 1
Q ss_pred HHHHHHHH----Hc--CCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 108 MDAQNVAR----QL--RIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 108 ~~~~~~~~----~~--~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
+....+.. .. .++++++||++|.|+.++++++.+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 124 NELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred HHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 11111111 11 36799999999999999999998764
No 158
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.68 E-value=8.5e-16 Score=118.56 Aligned_cols=122 Identities=25% Similarity=0.308 Sum_probs=93.4
Q ss_pred ccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHH--------HHHHhhcCCEEEEEEECCChhhHHHHHHHHHH
Q psy11289 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAM--------REQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQ 78 (159)
Q Consensus 7 f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~ 78 (159)
++.++++|+.+.....+.++|.++ .+|||+|...+... ...+++++|++++|||++++.++++...|..
T Consensus 242 ~v~~~~gtT~d~~~~~i~~~g~~i--~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~- 318 (449)
T PRK05291 242 IVTDIAGTTRDVIEEHINLDGIPL--RLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE- 318 (449)
T ss_pred ccCCCCCcccccEEEEEEECCeEE--EEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh-
Confidence 567777887777777788888765 55999998765432 2346789999999999999988776544432
Q ss_pred HHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 79 ILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 79 i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
..+.|+++|+||+|+.+..... ...+.+++++||++|.|++++++++.+.+..
T Consensus 319 ------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 319 ------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred ------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 2568999999999986533221 3345779999999999999999999998764
No 159
>PRK04213 GTP-binding protein; Provisional
Probab=99.68 E-value=1.8e-16 Score=110.26 Aligned_cols=108 Identities=16% Similarity=0.149 Sum_probs=72.4
Q ss_pred EEEEEeCCC-----------cccchHHHHHHhh----cCCEEEEEEECCChhhHHHHHHHH--------HHHHhhcCCCC
Q psy11289 31 RLDILDTAG-----------QEEFSAMREQYMR----SGEGFLLVFSVTDRNSFEEIYKFH--------RQILRVKDRDE 87 (159)
Q Consensus 31 ~~~l~D~~g-----------~~~~~~~~~~~~~----~~~~ii~v~d~~~~~s~~~~~~~~--------~~i~~~~~~~~ 87 (159)
.+.+||||| ++++.+.+..++. .++++++|+|.++...+. .+|. ..+.......+
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~ 130 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEII--ERWEGRGEIPIDVEMFDFLRELG 130 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccc--cccccCCCcHHHHHHHHHHHHcC
Confidence 367799999 5677777777764 346777888775532210 1121 01111111247
Q ss_pred CcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCC---------cEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 88 FPMLMVGNKADLDHQRQVSSMDAQNVARQLRI---------PYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 88 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---------~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
+|+++|+||+|+.+.. .+...++++.+++ +++++||++| |++++++++.+.+.
T Consensus 131 ~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 131 IPPIVAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred CCeEEEEECccccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 8999999999986433 3455666777765 4799999999 99999999998764
No 160
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.68 E-value=3.3e-15 Score=111.93 Aligned_cols=126 Identities=21% Similarity=0.219 Sum_probs=87.6
Q ss_pred ccccccccccceEEEEEEE-CCeeEEEEEEeCCCccc---------chHHHHHHhhcCCEEEEEEECCChhhHHHHHHHH
Q psy11289 7 FVTDYDPTIEDSYTKQCVI-DDIPARLDILDTAGQEE---------FSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFH 76 (159)
Q Consensus 7 f~~~~~pt~~~~~~~~~~~-~~~~~~~~l~D~~g~~~---------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~ 76 (159)
+..++++|+-+.....+.+ ++.+ +.+|||+|..+ |.+.+ ..+.++|++++|+|++++.+.+++..|.
T Consensus 215 ~v~~~~~tT~d~~~~~i~~~~~~~--i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~~~~~ 291 (351)
T TIGR03156 215 YAADQLFATLDPTTRRLDLPDGGE--VLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDPDREEQIEAVE 291 (351)
T ss_pred eeccCCccccCCEEEEEEeCCCce--EEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHHHHHH
Confidence 3455555665556666677 4554 56699999832 22222 2478999999999999999888877665
Q ss_pred HHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 77 RQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 77 ~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
..+.... ..+.|+++|+||+|+.+... ..... ....+++++||++|.|++++++++.+.
T Consensus 292 ~~L~~l~-~~~~piIlV~NK~Dl~~~~~-----v~~~~-~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 292 KVLEELG-AEDIPQLLVYNKIDLLDEPR-----IERLE-EGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred HHHHHhc-cCCCCEEEEEEeecCCChHh-----HHHHH-hCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 5554432 34789999999999864221 11111 123468999999999999999998764
No 161
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.67 E-value=1.5e-15 Score=120.53 Aligned_cols=126 Identities=13% Similarity=0.243 Sum_probs=93.3
Q ss_pred cccccccccceEEEEEEECCeeEEEEEEeCCCcccchHH------HHHHh--hcCCEEEEEEECCChhhHHHHHHHHHHH
Q psy11289 8 VTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAM------REQYM--RSGEGFLLVFSVTDRNSFEEIYKFHRQI 79 (159)
Q Consensus 8 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~--~~~~~ii~v~d~~~~~s~~~~~~~~~~i 79 (159)
..++++++.+.....+..++.+ +++|||||++++.+. ...++ +++|++++|+|.++.+.. ..+..++
T Consensus 21 v~n~pG~Tv~~~~~~i~~~~~~--i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler~---l~l~~ql 95 (591)
T TIGR00437 21 VGNWPGVTVEKKEGKLGFQGED--IEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLERN---LYLTLQL 95 (591)
T ss_pred ecCCCCeEEEEEEEEEEECCeE--EEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchhh---HHHHHHH
Confidence 4556666555556667777766 466999999876542 34443 378999999999875432 2333333
Q ss_pred HhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 80 LRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 80 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
.+ .++|+++++||+|+.+.+.+.. +...+++.+|++++++||++|.|++++++++.+..
T Consensus 96 ~~----~~~PiIIVlNK~Dl~~~~~i~~-d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 96 LE----LGIPMILALNLVDEAEKKGIRI-DEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred Hh----cCCCEEEEEehhHHHHhCCChh-hHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 32 4689999999999876565543 56788889999999999999999999999998764
No 162
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.66 E-value=1.5e-14 Score=110.29 Aligned_cols=131 Identities=16% Similarity=0.173 Sum_probs=92.8
Q ss_pred cccccccceEEEEEEEC-CeeEEEEEEeCCCccc----chHHHHHH---hhcCCEEEEEEECCCh---hhHHHHHHHHHH
Q psy11289 10 DYDPTIEDSYTKQCVID-DIPARLDILDTAGQEE----FSAMREQY---MRSGEGFLLVFSVTDR---NSFEEIYKFHRQ 78 (159)
Q Consensus 10 ~~~pt~~~~~~~~~~~~-~~~~~~~l~D~~g~~~----~~~~~~~~---~~~~~~ii~v~d~~~~---~s~~~~~~~~~~ 78 (159)
+|+.|+-......+.++ +.. +.+||+||... ...+...+ ++.++++++|+|+++. +++++...|...
T Consensus 187 ~ypfTTl~PnlG~v~~~~~~~--~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~E 264 (424)
T PRK12297 187 NYHFTTLVPNLGVVETDDGRS--FVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKE 264 (424)
T ss_pred cCCcceeceEEEEEEEeCCce--EEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHH
Confidence 44444443333334444 444 55699999743 22344444 4568999999999865 677777788888
Q ss_pred HHhhcC-CCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 79 ILRVKD-RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 79 i~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
+..+.. ..++|.++|+||+|+.+. .+....+++.++.+++++||+++.|++++++++.+.+.+.
T Consensus 265 L~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 265 LKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred HhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 777643 247899999999998431 3445667777778899999999999999999999887654
No 163
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.66 E-value=4.4e-15 Score=117.99 Aligned_cols=115 Identities=21% Similarity=0.280 Sum_probs=89.3
Q ss_pred CCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCC
Q psy11289 26 DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQV 105 (159)
Q Consensus 26 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 105 (159)
++..+.++||||||+.+|...+..+++.+|++|+|+|+++....+....|.... . .+.|+++|+||+|+.+..
T Consensus 70 dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~----~~lpiIvViNKiDl~~a~-- 142 (600)
T PRK05433 70 DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NDLEIIPVLNKIDLPAAD-- 142 (600)
T ss_pred CCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEEEECCCCCccc--
Confidence 566788999999999999999999999999999999999876555554443321 1 467999999999986422
Q ss_pred CHHHHHHHHHHcCCc---EEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 106 SSMDAQNVARQLRIP---YIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 106 ~~~~~~~~~~~~~~~---~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
......++...++++ ++++||++|.|++++++++.+.+....
T Consensus 143 ~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 143 PERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred HHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 122234555556765 899999999999999999998876543
No 164
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.65 E-value=7.3e-15 Score=106.71 Aligned_cols=128 Identities=13% Similarity=0.013 Sum_probs=86.6
Q ss_pred cccccccccceEEEEEEECCeeEEEEEEeCCCcccc-hH-------HHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHH
Q psy11289 8 VTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEF-SA-------MREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQI 79 (159)
Q Consensus 8 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-~~-------~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i 79 (159)
+...++|+..........++. ++.+|||||.... .. ....+++++|++++|+|+++..+.. ..++..+
T Consensus 28 vs~~~~TTr~~i~~i~~~~~~--qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l 103 (270)
T TIGR00436 28 TSPKAQTTRNRISGIHTTGAS--QIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKL 103 (270)
T ss_pred cCCCCCcccCcEEEEEEcCCc--EEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHH
Confidence 345666777655444344444 4677999998542 11 1345578999999999999876664 3333333
Q ss_pred HhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 80 LRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 80 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
.. .+.|+++|+||+|+.+.... .+....++...+. +++++||++|.|++++++++.+.+.
T Consensus 104 ~~----~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~ 164 (270)
T TIGR00436 104 QN----LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLP 164 (270)
T ss_pred Hh----cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCC
Confidence 32 46899999999998642221 2233444444454 7999999999999999999988764
No 165
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.65 E-value=1.6e-15 Score=108.50 Aligned_cols=95 Identities=14% Similarity=0.135 Sum_probs=78.5
Q ss_pred ccchHHHHHHhhcCCEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCC
Q psy11289 41 EEFSAMREQYMRSGEGFLLVFSVTDRN-SFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRI 119 (159)
Q Consensus 41 ~~~~~~~~~~~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 119 (159)
+++..+.+.+++++|++++|||+++|. ++..+.+|+..+.. .++|+++|+||+|+.+.+.+..+....++ ..|+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~ 98 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGY 98 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCC
Confidence 677788888999999999999999887 89999999876543 57899999999999755544434444444 5789
Q ss_pred cEEEeCCCCCCCHHHHHHHHH
Q psy11289 120 PYIECSAKVRINVDQAFHELV 140 (159)
Q Consensus 120 ~~~~~sa~~~~~i~~~~~~l~ 140 (159)
+++++||++|.|++++|+.+.
T Consensus 99 ~v~~~SAktg~gi~eLf~~l~ 119 (245)
T TIGR00157 99 QVLMTSSKNQDGLKELIEALQ 119 (245)
T ss_pred eEEEEecCCchhHHHHHhhhc
Confidence 999999999999999998876
No 166
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.65 E-value=2.1e-15 Score=101.33 Aligned_cols=103 Identities=15% Similarity=0.066 Sum_probs=76.3
Q ss_pred EEeCCCcccchH----HHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHH
Q psy11289 34 ILDTAGQEEFSA----MREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMD 109 (159)
Q Consensus 34 l~D~~g~~~~~~----~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 109 (159)
+|||||...... .....++++|++++|+|+++.+++. ..|+..+ . .++|+++++||+|+.+ ...+.
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~--~~~~~~~---~--~~~~ii~v~nK~Dl~~---~~~~~ 110 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRL--PAGLLDI---G--VSKRQIAVISKTDMPD---ADVAA 110 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCccccc--CHHHHhc---c--CCCCeEEEEEccccCc---ccHHH
Confidence 599999832221 1123368999999999999887763 2344332 1 4579999999999864 23556
Q ss_pred HHHHHHHcCC--cEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 110 AQNVARQLRI--PYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 110 ~~~~~~~~~~--~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
..+++++.++ |++++||++|.|++++|+.+.+.+.+.
T Consensus 111 ~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 111 TRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQE 149 (158)
T ss_pred HHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchhh
Confidence 6777778775 899999999999999999998876543
No 167
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.64 E-value=2.1e-15 Score=105.21 Aligned_cols=108 Identities=19% Similarity=0.268 Sum_probs=75.8
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCCh----hhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCC
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR----NSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQV 105 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 105 (159)
.++.||||||++++...+...+.++|++++|+|++++ .+.+.+.. +... ...|+++++||+|+.+....
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~----~~~~---~~~~iiivvNK~Dl~~~~~~ 155 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAA----LEIM---GLKHIIIVQNKIDLVKEEQA 155 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHH----HHHc---CCCcEEEEEEchhccCHHHH
Confidence 5678899999998877777777889999999999874 23333322 2121 22478999999998642211
Q ss_pred --CHHHHHHHHHHc---CCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 106 --SSMDAQNVARQL---RIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 106 --~~~~~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
..++...+++.. +++++++||++|.|++++++.+.+.+.
T Consensus 156 ~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 156 LENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 112233333332 578999999999999999999987653
No 168
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.64 E-value=7.2e-15 Score=114.27 Aligned_cols=124 Identities=19% Similarity=0.177 Sum_probs=85.4
Q ss_pred cccccccceEEEEEEECCeeEEEEEEeCCCccc--------chHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 10 DYDPTIEDSYTKQCVIDDIPARLDILDTAGQEE--------FSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 10 ~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.++++.+.....+.+++..+ .+|||||.+. +...+..+++.+|++|+|||+++..++.. ..|...+..
T Consensus 68 ~~~gvT~d~~~~~~~~~~~~~--~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~ 144 (472)
T PRK03003 68 DVPGVTRDRVSYDAEWNGRRF--TVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR 144 (472)
T ss_pred CCCCCCEeeEEEEEEECCcEE--EEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH
Confidence 333333455566677777764 5699999863 33445667899999999999998766543 233333332
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
.++|+++|+||+|+.... .+....+ .+++ ..+++||++|.|++++|++++..+.+
T Consensus 145 ----~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 145 ----SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred ----cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 568999999999985421 1122222 3344 35799999999999999999988755
No 169
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.64 E-value=1.4e-14 Score=96.37 Aligned_cols=120 Identities=23% Similarity=0.300 Sum_probs=85.8
Q ss_pred cccccccccceEEEEEEECCeeEEEEEEeCCCcccchH--------HHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHH
Q psy11289 8 VTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSA--------MREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQI 79 (159)
Q Consensus 8 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i 79 (159)
..++++++.+.....+..++.. +.+|||||...+.. .....+..+|++++|+|++++.+......|..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~--~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-- 104 (157)
T cd04164 29 VSDIAGTTRDVIEESIDIGGIP--VRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL-- 104 (157)
T ss_pred ccCCCCCccceEEEEEEeCCEE--EEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--
Confidence 3444555545445556666555 56699999865432 12345678999999999999888777654332
Q ss_pred HhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 80 LRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 80 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
..+.|+++|+||+|+.+.... .....+.+++++||+++.|+.++++++...+
T Consensus 105 -----~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 105 -----PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred -----hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 257899999999998754432 3344467899999999999999999988754
No 170
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.63 E-value=1.6e-14 Score=114.38 Aligned_cols=110 Identities=19% Similarity=0.273 Sum_probs=79.6
Q ss_pred EEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy11289 21 KQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR---NSFEEIYKFHRQILRVKDRDEFPMLMVGNKA 97 (159)
Q Consensus 21 ~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 97 (159)
..+..++.. .+.||||||++.|..++...++.+|++++|+|+++. .+.+.+ ... ...++|+++++||+
T Consensus 127 ~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i----~~~----~~~~vPiIVviNKi 197 (587)
T TIGR00487 127 YHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAI----SHA----KAANVPIIVAINKI 197 (587)
T ss_pred EEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHH----HHH----HHcCCCEEEEEECc
Confidence 344554431 456799999999999999999999999999999873 444332 111 12568999999999
Q ss_pred CCCCcCCCCHHHHHHHHHHcC---------CcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 98 DLDHQRQVSSMDAQNVARQLR---------IPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 98 D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
|+.+. ..+.....+...+ .+++++||++|.|++++++++..+
T Consensus 198 Dl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 198 DKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILLQ 248 (587)
T ss_pred ccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhhh
Confidence 98642 2334444433332 469999999999999999999754
No 171
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=1.9e-14 Score=96.29 Aligned_cols=105 Identities=19% Similarity=0.264 Sum_probs=85.4
Q ss_pred EEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHH
Q psy11289 32 LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQ 111 (159)
Q Consensus 32 ~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 111 (159)
+.|+|||||+||.-+|+.+.+++.++++++|.+.+..+ +....+..+... ..+|+++.+||.|+.. ..++++.+
T Consensus 70 v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~---~~ip~vVa~NK~DL~~--a~ppe~i~ 143 (187)
T COG2229 70 VHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR---NPIPVVVAINKQDLFD--ALPPEKIR 143 (187)
T ss_pred EEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc---cCCCEEEEeeccccCC--CCCHHHHH
Confidence 45599999999999999999999999999999999888 555555444442 2289999999999975 44456666
Q ss_pred HHHHHc--CCcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 112 NVARQL--RIPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 112 ~~~~~~--~~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
++.+.. .++.++.+|.++++..+.++.+...
T Consensus 144 e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 144 EALKLELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred HHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence 665543 7899999999999999999888765
No 172
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.63 E-value=2.8e-14 Score=110.40 Aligned_cols=136 Identities=18% Similarity=0.147 Sum_probs=91.7
Q ss_pred ccccccccceEEEEEEECCeeEEEEEEeCCCcccc----hHHH---HHHhhcCCEEEEEEECCCh----hhHHHHHHHHH
Q psy11289 9 TDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEF----SAMR---EQYMRSGEGFLLVFSVTDR----NSFEEIYKFHR 77 (159)
Q Consensus 9 ~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~~---~~~~~~~~~ii~v~d~~~~----~s~~~~~~~~~ 77 (159)
.+|+.|+-......+..++.+ +.+||+||.... ..+. -..++.++++++|+|+++. +.+.++..|..
T Consensus 187 adypfTTl~P~lGvv~~~~~~--f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~ 264 (500)
T PRK12296 187 ADYPFTTLVPNLGVVQAGDTR--FTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEA 264 (500)
T ss_pred cccCcccccceEEEEEECCeE--EEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHH
Confidence 466666655445555666654 566999997421 1122 2235789999999999863 35555555555
Q ss_pred HHHhhc----------CCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 78 QILRVK----------DRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 78 ~i~~~~----------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
++..+. ...++|.++|+||+|+.+...+. +.........+++++++||+++.|++++++++.+.+....
T Consensus 265 EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 265 ELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred HHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH-HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 665543 22468999999999987543321 2222333455789999999999999999999998886544
No 173
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.63 E-value=1.6e-14 Score=114.55 Aligned_cols=131 Identities=17% Similarity=0.175 Sum_probs=93.0
Q ss_pred cccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCC---hhhHHHHHHHHHHHHh
Q psy11289 6 YFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD---RNSFEEIYKFHRQILR 81 (159)
Q Consensus 6 ~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~ 81 (159)
.+.+++.+++...+ ...+..++ ..+.+||+||+++|...+...+.++|++++|+|+++ +.+.+++. .+ .
T Consensus 27 ~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~----il-~ 99 (581)
T TIGR00475 27 RLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLA----VL-D 99 (581)
T ss_pred CChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHH----HH-H
Confidence 44445555554222 34456666 556779999999998888888899999999999998 55665542 12 2
Q ss_pred hcCCCCCc-EEEEEeCCCCCCcCCC--CHHHHHHHHHHc----CCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 82 VKDRDEFP-MLMVGNKADLDHQRQV--SSMDAQNVARQL----RIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 82 ~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
. .++| +++|+||+|+.+...+ ..++...+++.. +++++++||++|.|++++++.+...+...
T Consensus 100 ~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 100 L---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESL 168 (581)
T ss_pred H---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhC
Confidence 2 3567 9999999998654332 123445555554 47899999999999999999988766543
No 174
>PRK15494 era GTPase Era; Provisional
Probab=99.63 E-value=2e-14 Score=107.37 Aligned_cols=121 Identities=17% Similarity=0.187 Sum_probs=82.2
Q ss_pred cccceEEEEEEECCeeEEEEEEeCCCccc-chHHHH-------HHhhcCCEEEEEEECCChhhHHHHH-HHHHHHHhhcC
Q psy11289 14 TIEDSYTKQCVIDDIPARLDILDTAGQEE-FSAMRE-------QYMRSGEGFLLVFSVTDRNSFEEIY-KFHRQILRVKD 84 (159)
Q Consensus 14 t~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~-------~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~ 84 (159)
|+.+.....++.++.+ +.||||||... +..+.. ..++++|++++|+|.++ ++.... .|+..+..
T Consensus 86 tTr~~~~~~~~~~~~q--i~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~--- 158 (339)
T PRK15494 86 TTRSIITGIITLKDTQ--VILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRS--- 158 (339)
T ss_pred CccCcEEEEEEeCCeE--EEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---
Confidence 3344445666777765 56799999843 322221 23679999999999765 344443 34444433
Q ss_pred CCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcC--CcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 85 RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLR--IPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 85 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
.+.|+++|+||+|+.+. ...+..+++...+ .+++++||++|.|++++|+++...+.+
T Consensus 159 -~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 159 -LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred -cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence 34677899999998642 2345555555544 569999999999999999999886643
No 175
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.62 E-value=1e-14 Score=97.01 Aligned_cols=124 Identities=19% Similarity=0.278 Sum_probs=90.0
Q ss_pred cccccccccccceEEEEEEECCeeEEEEEEeCCCcccc------hHHHHHHh--hcCCEEEEEEECCChhhHHHHHHHHH
Q psy11289 6 YFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEF------SAMREQYM--RSGEGFLLVFSVTDRNSFEEIYKFHR 77 (159)
Q Consensus 6 ~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~------~~~~~~~~--~~~~~ii~v~d~~~~~s~~~~~~~~~ 77 (159)
..+.+|++++-+.....+..++..+.+ +|+||.... ......++ ...|+++.|.|+++.+.-.. +..
T Consensus 25 ~~v~n~pG~Tv~~~~g~~~~~~~~~~l--vDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~---l~~ 99 (156)
T PF02421_consen 25 QKVGNWPGTTVEKKEGIFKLGDQQVEL--VDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERNLY---LTL 99 (156)
T ss_dssp EEEEESTTSSSEEEEEEEEETTEEEEE--EE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHHH---HHH
T ss_pred ceecCCCCCCeeeeeEEEEecCceEEE--EECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHHH---HHH
Confidence 446788999888778888888877655 999996433 22334444 58999999999998543322 334
Q ss_pred HHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHH
Q psy11289 78 QILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHEL 139 (159)
Q Consensus 78 ~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 139 (159)
++.+ .++|++++.||+|...++.+.. +...+++.+|+|++++||+++.|++++++.+
T Consensus 100 ql~e----~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 100 QLLE----LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp HHHH----TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred HHHH----cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 4444 4689999999999877666654 4678888999999999999999999999875
No 176
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.62 E-value=2.7e-14 Score=99.62 Aligned_cols=98 Identities=14% Similarity=0.260 Sum_probs=70.6
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcC-CEEEEEEECCCh-hhHHHHHHHHHHHHh
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSG-EGFLLVFSVTDR-NSFEEIYKFHRQILR 81 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~-~~ii~v~d~~~~-~s~~~~~~~~~~i~~ 81 (159)
.+.|..+++++............+....+.+||+||+.++...+..+++++ +++|+|+|+++. .++..+..|+..+..
T Consensus 22 ~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~ 101 (203)
T cd04105 22 TGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILT 101 (203)
T ss_pred cCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHH
Confidence 445666665553322222222224456678899999999998888999998 999999999997 788888777766544
Q ss_pred hcC--CCCCcEEEEEeCCCCCC
Q psy11289 82 VKD--RDEFPMLMVGNKADLDH 101 (159)
Q Consensus 82 ~~~--~~~~p~ivv~nK~D~~~ 101 (159)
... ..++|+++++||+|+..
T Consensus 102 ~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 102 DLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred HHhhccCCCCEEEEecchhhcc
Confidence 322 25789999999999854
No 177
>PRK11058 GTPase HflX; Provisional
Probab=99.62 E-value=4.9e-14 Score=107.94 Aligned_cols=130 Identities=18% Similarity=0.188 Sum_probs=88.7
Q ss_pred cccccccccceEEEEEEECCe-eEEEEEEeCCCcccc--hHHHHHH------hhcCCEEEEEEECCChhhHHHHHHHHHH
Q psy11289 8 VTDYDPTIEDSYTKQCVIDDI-PARLDILDTAGQEEF--SAMREQY------MRSGEGFLLVFSVTDRNSFEEIYKFHRQ 78 (159)
Q Consensus 8 ~~~~~pt~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~--~~~~~~~------~~~~~~ii~v~d~~~~~s~~~~~~~~~~ 78 (159)
..++++|+-+.....+.+.+. + +.+|||+|..+. ..++..+ ++++|++++|+|++++.+++.+..|...
T Consensus 224 v~~~~~tTld~~~~~i~l~~~~~--~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~i 301 (426)
T PRK11058 224 AADQLFATLDPTLRRIDVADVGE--TVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTV 301 (426)
T ss_pred eccCCCCCcCCceEEEEeCCCCe--EEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHH
Confidence 445555555555555666553 4 456999998542 3333333 5789999999999999888887655444
Q ss_pred HHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCc-EEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 79 ILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIP-YIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 79 i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
+.... ..++|+++|+||+|+.+... . .. . ....+.+ ++++||++|.|++++++++...+..
T Consensus 302 L~el~-~~~~pvIiV~NKiDL~~~~~--~-~~-~-~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 302 LEEID-AHEIPTLLVMNKIDMLDDFE--P-RI-D-RDEENKPIRVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred HHHhc-cCCCCEEEEEEcccCCCchh--H-HH-H-HHhcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 44332 24789999999999864211 1 11 1 1224556 5899999999999999999998854
No 178
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.61 E-value=1.7e-14 Score=99.76 Aligned_cols=116 Identities=16% Similarity=0.087 Sum_probs=76.8
Q ss_pred CeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCC-
Q psy11289 27 DIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQV- 105 (159)
Q Consensus 27 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~- 105 (159)
+....+.+|||||+..+........+.+|++++|+|+++.........+. +... .+.|+++++||+|+......
T Consensus 65 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~ 139 (192)
T cd01889 65 EENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERE 139 (192)
T ss_pred ccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHH
Confidence 34567788999999765333333456789999999998854433322221 1222 35699999999998642221
Q ss_pred -CHHHHHHH-HH------HcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 106 -SSMDAQNV-AR------QLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 106 -~~~~~~~~-~~------~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
..++..+. .. ..+++++++||++|.|++++++.+..++...+
T Consensus 140 ~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~~ 189 (192)
T cd01889 140 RKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLPL 189 (192)
T ss_pred HHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccccc
Confidence 12222221 11 13578999999999999999999999886543
No 179
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.60 E-value=2.8e-14 Score=115.76 Aligned_cols=137 Identities=18% Similarity=0.172 Sum_probs=95.1
Q ss_pred ccccccccccceEEEEEEECCeeEEEEEEeCCCccc----------chHHH-HHHhhcCCEEEEEEECCChhhHHHHHHH
Q psy11289 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEE----------FSAMR-EQYMRSGEGFLLVFSVTDRNSFEEIYKF 75 (159)
Q Consensus 7 f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~-~~~~~~~~~ii~v~d~~~~~s~~~~~~~ 75 (159)
++.++++|+.+.+...+.+++..+. +|||||..+ |..+. ...++.+|++++|+|+++..+..+.. +
T Consensus 477 ~v~~~~gtT~d~~~~~~~~~~~~~~--liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i 553 (712)
T PRK09518 477 VVNDLAGTTRDPVDEIVEIDGEDWL--FIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-V 553 (712)
T ss_pred ccCCCCCCCcCcceeEEEECCCEEE--EEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-H
Confidence 5677888888877777788888765 599999642 22221 23468899999999999988877754 3
Q ss_pred HHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHH-HHHHHc----CCcEEEeCCCCCCCHHHHHHHHHHHHHhccccC
Q psy11289 76 HRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQ-NVARQL----RIPYIECSAKVRINVDQAFHELVRIVLLHTKQC 150 (159)
Q Consensus 76 ~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~~~~~----~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~ 150 (159)
+..+.. .++|+++|+||+|+.+... .+... .+...+ ..+++++||++|.|++++++.+.+.+.+.....
T Consensus 554 ~~~~~~----~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~i 627 (712)
T PRK09518 554 MSMAVD----AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQRI 627 (712)
T ss_pred HHHHHH----cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccC
Confidence 344433 4689999999999864221 11111 122222 246799999999999999999998877655443
Q ss_pred CC
Q psy11289 151 KN 152 (159)
Q Consensus 151 ~~ 152 (159)
.+
T Consensus 628 ~T 629 (712)
T PRK09518 628 PT 629 (712)
T ss_pred Ch
Confidence 33
No 180
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.60 E-value=4.6e-14 Score=113.64 Aligned_cols=111 Identities=23% Similarity=0.339 Sum_probs=82.2
Q ss_pred EEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy11289 22 QCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR---NSFEEIYKFHRQILRVKDRDEFPMLMVGNKAD 98 (159)
Q Consensus 22 ~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 98 (159)
....++....+.||||||++.|..++..+++.+|++|+|+|+++. .+++.+. .+. ..++|+|+++||+|
T Consensus 287 ~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~----~~k----~~~iPiIVViNKiD 358 (742)
T CHL00189 287 EFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAIN----YIQ----AANVPIIVAINKID 358 (742)
T ss_pred EEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHH----HHH----hcCceEEEEEECCC
Confidence 344455567788899999999999999999999999999999874 4444332 221 25689999999999
Q ss_pred CCCcCCCCHHHHHHH-------HHHcC--CcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 99 LDHQRQVSSMDAQNV-------ARQLR--IPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 99 ~~~~~~~~~~~~~~~-------~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
+.... .+...+. +..++ ++++++||++|.|+++++++++...
T Consensus 359 l~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 359 KANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred ccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 86422 2222221 22333 6899999999999999999998764
No 181
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.59 E-value=3.7e-14 Score=97.23 Aligned_cols=110 Identities=20% Similarity=0.311 Sum_probs=81.0
Q ss_pred eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCC--
Q psy11289 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVS-- 106 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~-- 106 (159)
...+.+||+||..++...+..+++.+|++++|+|++++.+... ..++..+.. .+.|+++++||+|+.......
T Consensus 61 ~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~ 135 (189)
T cd00881 61 DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEV 135 (189)
T ss_pred CEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHH
Confidence 4567779999999988888999999999999999988665433 233333322 568999999999986532221
Q ss_pred HHHHHHHHHH--------------cCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 107 SMDAQNVARQ--------------LRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 107 ~~~~~~~~~~--------------~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
.+......+. ...+++++||++|.|++++++++...+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 136 LREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred HHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 2223333332 246799999999999999999999875
No 182
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.58 E-value=2.7e-14 Score=110.17 Aligned_cols=134 Identities=19% Similarity=0.179 Sum_probs=89.3
Q ss_pred cccccccccccceEEEEEEECCeeEEEEEEeCCCcccchH----------H-HHHHhhcCCEEEEEEECCChhhHHHHHH
Q psy11289 6 YFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSA----------M-REQYMRSGEGFLLVFSVTDRNSFEEIYK 74 (159)
Q Consensus 6 ~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~-~~~~~~~~~~ii~v~d~~~~~s~~~~~~ 74 (159)
......++|+.+.....+..++..+. +|||||..+... . ...+++.+|++|+|+|++++.+..+..
T Consensus 199 ~~~~~~~gtt~~~~~~~~~~~~~~~~--lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~- 275 (435)
T PRK00093 199 VIVSDIAGTTRDSIDTPFERDGQKYT--LIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR- 275 (435)
T ss_pred eeecCCCCceEEEEEEEEEECCeeEE--EEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-
Confidence 34555666766666666666777765 599999643211 1 123578899999999999987766543
Q ss_pred HHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHH----cCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 75 FHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQ----LRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 75 ~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
+...+.+ .++|+++++||+|+.+.... .+....+... ..++++++||++|.|++++++.+.+......
T Consensus 276 i~~~~~~----~~~~~ivv~NK~Dl~~~~~~-~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~ 347 (435)
T PRK00093 276 IAGLALE----AGRALVIVVNKWDLVDEKTM-EEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENAN 347 (435)
T ss_pred HHHHHHH----cCCcEEEEEECccCCCHHHH-HHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 3333332 46899999999998632211 1111222222 2478999999999999999999887665443
No 183
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.58 E-value=8.5e-14 Score=107.41 Aligned_cols=123 Identities=20% Similarity=0.191 Sum_probs=87.2
Q ss_pred ccccccccccceEEEEEEECCeeEEEEEEeCCCccc--------chHHHHHHhhcCCEEEEEEECCChhhHH--HHHHHH
Q psy11289 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEE--------FSAMREQYMRSGEGFLLVFSVTDRNSFE--EIYKFH 76 (159)
Q Consensus 7 f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~~~~~ii~v~d~~~~~s~~--~~~~~~ 76 (159)
+..++++++.+.....+.+++. .+.+|||||++. +......+++++|++++|+|++++.+.. .+..|+
T Consensus 28 ~v~~~~~~t~d~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l 105 (435)
T PRK00093 28 IVADTPGVTRDRIYGEAEWLGR--EFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKIL 105 (435)
T ss_pred eeCCCCCCcccceEEEEEECCc--EEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHH
Confidence 4566667666776777778874 466799999986 2233456678999999999998854432 233443
Q ss_pred HHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCc-EEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 77 RQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIP-YIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 77 ~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
.. .+.|+++|+||+|+.+. .....++ ..+|+. ++++||++|.|+.++++++....
T Consensus 106 ~~-------~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 106 RK-------SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred HH-------cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHhhC
Confidence 32 36799999999996531 1222232 355764 89999999999999999998743
No 184
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.57 E-value=4.2e-13 Score=90.53 Aligned_cols=126 Identities=23% Similarity=0.270 Sum_probs=82.4
Q ss_pred cccccccceEEEEEEECCeeEEEEEEeCCCcccc----------hH-HHHHHhhcCCEEEEEEECCChhhHHHHHHHHHH
Q psy11289 10 DYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEF----------SA-MREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQ 78 (159)
Q Consensus 10 ~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~~-~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~ 78 (159)
+.+++........+..++..+ .+||+||..+. .. .....+..+|++++|+|++++.+.... .++..
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~--~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~ 108 (174)
T cd01895 32 DIAGTTRDSIDVPFEYDGKKY--TLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL-RIAGL 108 (174)
T ss_pred CCCCCccCceeeEEEECCeeE--EEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH-HHHHH
Confidence 344444444455666677665 45999997433 11 112346789999999999998776543 23333
Q ss_pred HHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHH-HHHHHHc----CCcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 79 ILRVKDRDEFPMLMVGNKADLDHQRQVSSMDA-QNVARQL----RIPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 79 i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~----~~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
+.. .+.|+++++||+|+.+......+.. ..+.+.+ ..+++++||+++.|+.++++.+.+.
T Consensus 109 ~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 109 ILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred HHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 222 4679999999999875432222222 2233333 3679999999999999999998764
No 185
>KOG0074|consensus
Probab=99.57 E-value=1.6e-14 Score=92.70 Aligned_cols=126 Identities=26% Similarity=0.321 Sum_probs=96.4
Q ss_pred cccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCc
Q psy11289 10 DYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFP 89 (159)
Q Consensus 10 ~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 89 (159)
.-.||.|.. .+.+.. ...+++.+||++|+...+..|..|+.+.|++|+|.|.+|...|+++..-+.++........+|
T Consensus 44 hltpT~GFn-~k~v~~-~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vp 121 (185)
T KOG0074|consen 44 HLTPTNGFN-TKKVEY-DGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVP 121 (185)
T ss_pred hccccCCcc-eEEEee-cCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccc
Confidence 345676655 333333 344678889999999999999999999999999999999999998887677777766667899
Q ss_pred EEEEEeCCCCCCcCCCCHHHHHHHHHHc--------CCcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 90 MLMVGNKADLDHQRQVSSMDAQNVARQL--------RIPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 90 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~--------~~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
+.+.+||.|+.....+ .+.+..+ .+.+-+|||+++.|+....+|+...
T Consensus 122 vlIfankQdlltaa~~-----eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~sn 177 (185)
T KOG0074|consen 122 VLIFANKQDLLTAAKV-----EEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQSN 177 (185)
T ss_pred eeehhhhhHHHhhcch-----HHHHHhcchhhhhhceEEeeeCccccccCccCcchhhhcC
Confidence 9999999998643222 2222222 2457899999999999999998764
No 186
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.56 E-value=1.1e-13 Score=106.69 Aligned_cols=126 Identities=20% Similarity=0.217 Sum_probs=90.9
Q ss_pred cccccccccccceEEEEEEECCeeEEEEEEeCCCcc--------cchHHHHHHhhcCCEEEEEEECCChhhHHH--HHHH
Q psy11289 6 YFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQE--------EFSAMREQYMRSGEGFLLVFSVTDRNSFEE--IYKF 75 (159)
Q Consensus 6 ~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~--~~~~ 75 (159)
.+..++++++.+.....+.+++..+ .+|||||.. .+......+++.+|++++|+|+.++.+... +..|
T Consensus 25 ~~v~~~~g~t~d~~~~~~~~~~~~~--~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~ 102 (429)
T TIGR03594 25 AIVSDTPGVTRDRKYGDAEWGGREF--ILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKW 102 (429)
T ss_pred ceecCCCCcccCceEEEEEECCeEE--EEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHH
Confidence 3566777777777777777788764 559999963 334456667899999999999987544332 3333
Q ss_pred HHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 76 HRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 76 ~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
+. + .++|+++|+||+|+.+.... ..+ +..+|+ +++++||..|.|+.++++++...+..
T Consensus 103 l~---~----~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 103 LR---K----SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred HH---H----hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCc
Confidence 32 2 46799999999998653321 112 345676 69999999999999999999987754
No 187
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.56 E-value=1.4e-13 Score=111.76 Aligned_cols=109 Identities=22% Similarity=0.307 Sum_probs=79.7
Q ss_pred EEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy11289 21 KQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD---RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKA 97 (159)
Q Consensus 21 ~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 97 (159)
..+.+++.. +.||||||++.|..++...++.+|++|+|+|+++ +.+.+.+. .. ...++|+|+++||+
T Consensus 330 ~~v~~~~~~--ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~----~a----~~~~vPiIVviNKi 399 (787)
T PRK05306 330 YQVETNGGK--ITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAIN----HA----KAAGVPIIVAINKI 399 (787)
T ss_pred EEEEECCEE--EEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHH----HH----HhcCCcEEEEEECc
Confidence 345556644 5669999999999999989999999999999988 44444321 11 12568999999999
Q ss_pred CCCCcCCCCHHHHHH-------HHHHcC--CcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 98 DLDHQRQVSSMDAQN-------VARQLR--IPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 98 D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
|+.+.. .+.... ++..++ ++++++||++|.|++++++++...
T Consensus 400 Dl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 400 DKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred cccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 986421 222211 233333 789999999999999999999864
No 188
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.56 E-value=1.2e-13 Score=91.53 Aligned_cols=109 Identities=21% Similarity=0.230 Sum_probs=77.5
Q ss_pred eEEEEEEeCCCcccchH-------HHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q psy11289 29 PARLDILDTAGQEEFSA-------MREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDH 101 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~-------~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 101 (159)
...+.+||+||...+.. ....+++.+|++++|+|.+++.+..... |...... .+.|+++|+||+|+..
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLP 118 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCC
Confidence 34567799999866532 3445788999999999999987776654 3333322 5789999999999865
Q ss_pred cCCCCHHH---HHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 102 QRQVSSMD---AQNVARQLRIPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 102 ~~~~~~~~---~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
........ ........+.+++++||+++.|+.++++++.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 119 EEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred hhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 43322211 112222335789999999999999999999875
No 189
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.55 E-value=7.1e-14 Score=89.27 Aligned_cols=84 Identities=29% Similarity=0.521 Sum_probs=64.8
Q ss_pred ccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH---HHHHHHHhhcCCCCC
Q psy11289 13 PTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY---KFHRQILRVKDRDEF 88 (159)
Q Consensus 13 pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~---~~~~~i~~~~~~~~~ 88 (159)
++.+..+ .....+......+++||++|++.+...+..++.++|++++|||+++++|++.+. .|+..+.... .++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~--~~~ 109 (119)
T PF08477_consen 32 ETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRD--KNI 109 (119)
T ss_dssp SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHS--SCS
T ss_pred ccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccC--CCC
Confidence 3344444 345566777666899999999988877777799999999999999999998875 4566665543 569
Q ss_pred cEEEEEeCCC
Q psy11289 89 PMLMVGNKAD 98 (159)
Q Consensus 89 p~ivv~nK~D 98 (159)
|+++||||.|
T Consensus 110 piilv~nK~D 119 (119)
T PF08477_consen 110 PIILVGNKSD 119 (119)
T ss_dssp EEEEEEE-TC
T ss_pred CEEEEEeccC
Confidence 9999999998
No 190
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.55 E-value=1.2e-13 Score=102.44 Aligned_cols=145 Identities=17% Similarity=0.184 Sum_probs=106.4
Q ss_pred ccccccccccccccceEEEEEEECC--------eeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCCh--------
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDD--------IPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR-------- 66 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~--------~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~-------- 66 (159)
+++.+.++|.||..|.+.......| ..+.+.+||+||+...+..|..++.++++++||+|+++.
T Consensus 126 ~~ri~~~~y~Pt~~Dil~~r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~ 205 (317)
T cd00066 126 LDRISDPDYIPTEQDILRARVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDE 205 (317)
T ss_pred HHHHhCCCCCCChhHheeeecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCC
Confidence 3556788999998877633322222 345677799999999999999999999999999999874
Q ss_pred --hhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCc----------------CCCCHHHHHHHHHH----------cC
Q psy11289 67 --NSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQ----------------RQVSSMDAQNVARQ----------LR 118 (159)
Q Consensus 67 --~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~----------------~~~~~~~~~~~~~~----------~~ 118 (159)
..+.+....+..+.......++|+++++||.|+..+ ..-+.+.+..+... ..
T Consensus 206 ~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~ 285 (317)
T cd00066 206 STNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKE 285 (317)
T ss_pred cchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCe
Confidence 456666666677666555568999999999996211 12234455444332 12
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 119 IPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 119 ~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
+.++.++|.+..++..+|+.+...+.+..
T Consensus 286 ~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 286 IYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred EEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 44678999999999999999999887765
No 191
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.54 E-value=4.9e-13 Score=101.45 Aligned_cols=137 Identities=18% Similarity=0.174 Sum_probs=95.7
Q ss_pred cccccccccceEEEEEEECCeeEEEEEEeCCCcccchH----HH---HHHhhcCCEEEEEEECC---ChhhHHHHHHHHH
Q psy11289 8 VTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSA----MR---EQYMRSGEGFLLVFSVT---DRNSFEEIYKFHR 77 (159)
Q Consensus 8 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~~---~~~~~~~~~ii~v~d~~---~~~s~~~~~~~~~ 77 (159)
+.+|+.|+.......+..++.. .+.|+||||..+-.+ +. -..++.++++++|+|++ +.+.+++...|+.
T Consensus 186 vs~~p~TT~~p~~Giv~~~~~~-~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~ 264 (390)
T PRK12298 186 VADYPFTTLVPNLGVVRVDDER-SFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIIN 264 (390)
T ss_pred ccCCCCCccCcEEEEEEeCCCc-EEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHH
Confidence 4667777776655555654322 245699999854211 12 23467899999999998 4567777777877
Q ss_pred HHHhhcC-CCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcC--CcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 78 QILRVKD-RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLR--IPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 78 ~i~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
++..+.. ..+.|.++|+||+|+.....+ .+....+.+..+ .+++.+||+++.|++++++++.+.+.+.
T Consensus 265 eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 265 ELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred HHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 7776532 236899999999998654332 233444555544 4699999999999999999999988654
No 192
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.52 E-value=2.5e-13 Score=107.86 Aligned_cols=121 Identities=21% Similarity=0.282 Sum_probs=87.0
Q ss_pred EEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 21 KQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 21 ~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
+...++...++++||||||+.+|...+..+++.+|++++|+|+++.. ......|+..+.. .++|+++++||+|+.
T Consensus 55 ~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~ 129 (594)
T TIGR01394 55 KNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRP 129 (594)
T ss_pred eeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCC
Confidence 33334444466778999999999988999999999999999998742 3344556655544 467999999999986
Q ss_pred CcCCC-CHHHHHHHHH-------HcCCcEEEeCCCCCC----------CHHHHHHHHHHHHHhc
Q psy11289 101 HQRQV-SSMDAQNVAR-------QLRIPYIECSAKVRI----------NVDQAFHELVRIVLLH 146 (159)
Q Consensus 101 ~~~~~-~~~~~~~~~~-------~~~~~~~~~sa~~~~----------~i~~~~~~l~~~~~~~ 146 (159)
+.+.. ..++...+.. ++.++++.+||++|. |+..+|+.++..+...
T Consensus 130 ~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 130 SARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred CcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 53311 1233333332 235789999999995 7999999998877544
No 193
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.51 E-value=9.4e-13 Score=106.98 Aligned_cols=127 Identities=17% Similarity=0.151 Sum_probs=84.3
Q ss_pred ccccccccccceEEEEEEECCeeEEEEEEeCCCccc--------chHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHH
Q psy11289 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEE--------FSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQ 78 (159)
Q Consensus 7 f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~ 78 (159)
+++++++++.+........++..+ .+|||||.+. +......+++.+|++|+|+|+++.-...+ ..|...
T Consensus 302 iv~~~pGvT~d~~~~~~~~~~~~~--~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~ 378 (712)
T PRK09518 302 VVEDTPGVTRDRVSYDAEWAGTDF--KLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRM 378 (712)
T ss_pred eecCCCCeeEEEEEEEEEECCEEE--EEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHH
Confidence 345555555555566666677665 5599999763 23345567889999999999987422211 133333
Q ss_pred HHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 79 ILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 79 i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
+.. .++|+++|+||+|+.... .....+. .++. ..+++||++|.|+++++++++..+..
T Consensus 379 Lr~----~~~pvIlV~NK~D~~~~~----~~~~~~~-~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 379 LRR----AGKPVVLAVNKIDDQASE----YDAAEFW-KLGLGEPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred HHh----cCCCEEEEEECcccccch----hhHHHHH-HcCCCCeEEEECCCCCCchHHHHHHHHhccc
Confidence 322 578999999999985421 1122221 2343 36799999999999999999988754
No 194
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.50 E-value=2.9e-13 Score=103.49 Aligned_cols=109 Identities=19% Similarity=0.272 Sum_probs=77.5
Q ss_pred eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChh----hHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCC
Q psy11289 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRN----SFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQ 104 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~----s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~ 104 (159)
...+.+||+||+++|...+......+|++++|+|++++. +.+++. .+ ... ...|+++++||+|+.+...
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~----~l-~~~--gi~~iIVvvNK~Dl~~~~~ 151 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM----AL-EII--GIKNIVIVQNKIDLVSKEK 151 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH----HH-HHc--CCCeEEEEEEccccCCHHH
Confidence 356778999999999887777788899999999999643 333332 22 221 2247899999999865322
Q ss_pred C--CHHHHHHHHHHc---CCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 105 V--SSMDAQNVARQL---RIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 105 ~--~~~~~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
. ..++...+.+.. +++++++||++|.|++++++++...+.
T Consensus 152 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 152 ALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 1 123333344332 578999999999999999999988654
No 195
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.49 E-value=5.6e-13 Score=105.56 Aligned_cols=104 Identities=16% Similarity=0.242 Sum_probs=74.9
Q ss_pred EEEEeCCCcccchHHHHHHhhcCCEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCC----
Q psy11289 32 LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD---RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQ---- 104 (159)
Q Consensus 32 ~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~---- 104 (159)
+.||||||++.|..++..+++.+|++++|+|+++ +.+++.+.. +.. .++|+++++||+|+.....
T Consensus 71 l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~----~~vpiIVv~NK~Dl~~~~~~~~~ 142 (590)
T TIGR00491 71 LLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM----YKTPFVVAANKIDRIPGWRSHEG 142 (590)
T ss_pred EEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HHH----cCCCEEEEEECCCccchhhhccC
Confidence 6789999999999999999999999999999987 556555431 111 4689999999999853211
Q ss_pred CC--------HHH------------HHHHHH------------Hc--CCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 105 VS--------SMD------------AQNVAR------------QL--RIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 105 ~~--------~~~------------~~~~~~------------~~--~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
.+ ... ..++++ .+ .++++++||++|.|+++++.++....
T Consensus 143 ~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 143 RPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred chHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 00 000 011111 11 26799999999999999999887544
No 196
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.49 E-value=5.3e-13 Score=92.02 Aligned_cols=112 Identities=20% Similarity=0.285 Sum_probs=76.8
Q ss_pred CeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCC-
Q psy11289 27 DIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQV- 105 (159)
Q Consensus 27 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~- 105 (159)
.....+.++|+||+.+|.......++.+|++|+|+|+.+.-.... ...+..+.. .++|++++.||+|+.+.+..
T Consensus 67 ~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~----~~~p~ivvlNK~D~~~~~~~~ 141 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE----LGIPIIVVLNKMDLIEKELEE 141 (188)
T ss_dssp ESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH----TT-SEEEEEETCTSSHHHHHH
T ss_pred ccccceeecccccccceeecccceecccccceeeeeccccccccc-ccccccccc----cccceEEeeeeccchhhhHHH
Confidence 334456669999999998878888899999999999987644322 222233323 56789999999998721110
Q ss_pred CHHHHH-HHHHHcC------CcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 106 SSMDAQ-NVARQLR------IPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 106 ~~~~~~-~~~~~~~------~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
..++.. .+.+..+ ++++++||++|.|+.++++.+.+.+
T Consensus 142 ~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 142 IIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred HHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 011111 3333332 5799999999999999999988764
No 197
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.48 E-value=1.1e-12 Score=104.67 Aligned_cols=110 Identities=20% Similarity=0.228 Sum_probs=78.2
Q ss_pred CCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCC
Q psy11289 26 DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD---RNSFEEIYKFHRQILRVKDRDEFP-MLMVGNKADLDH 101 (159)
Q Consensus 26 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~ 101 (159)
++.. +.+|||||+++|.......+.++|++++|+|+++ +.+.+.+. +... .++| +++|+||+|+.+
T Consensus 49 ~g~~--i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~-----il~~---lgi~~iIVVlNKiDlv~ 118 (614)
T PRK10512 49 DGRV--LGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLA-----ILQL---TGNPMLTVALTKADRVD 118 (614)
T ss_pred CCcE--EEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHH-----HHHH---cCCCeEEEEEECCccCC
Confidence 4555 5669999999997766777889999999999987 44444432 2222 2345 579999999865
Q ss_pred cCCCC--HHHHHHHHHHcC---CcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 102 QRQVS--SMDAQNVARQLR---IPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 102 ~~~~~--~~~~~~~~~~~~---~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
+..+. .++...+....+ .+++++||++|.|++++++.+......
T Consensus 119 ~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 119 EARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 33221 233444444444 679999999999999999999875543
No 198
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.48 E-value=5.9e-13 Score=100.49 Aligned_cols=148 Identities=23% Similarity=0.246 Sum_probs=109.8
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHH-----------HHHHhhcCCEEEEEEECCChhhHHHH
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAM-----------REQYMRSGEGFLLVFSVTDRNSFEEI 72 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----------~~~~~~~~~~ii~v~d~~~~~s~~~~ 72 (159)
++..+.+.++|+.+.....++.+++++.+ .||+|..+-... ....+..++.+++|.|++.+-+-++.
T Consensus 202 eR~Iv~~~aGTTRD~I~~~~e~~~~~~~l--iDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~ 279 (444)
T COG1160 202 ERVIVSDIAGTTRDSIDIEFERDGRKYVL--IDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDL 279 (444)
T ss_pred ceEEecCCCCccccceeeeEEECCeEEEE--EECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHH
Confidence 55677888999999999999999999887 999998653222 22336789999999999998776653
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHH-HHHHc----CCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 73 YKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQN-VARQL----RIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 73 ~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~~~----~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.+..+....+.+++++.||.|+.+.+..+.++.+. +...+ ..+.+.+||++|.++.++|+.+........
T Consensus 280 -----~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~ 354 (444)
T COG1160 280 -----RIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECAT 354 (444)
T ss_pred -----HHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhc
Confidence 23333333678999999999987654444444322 22222 267999999999999999999998888777
Q ss_pred ccCCCCccccc
Q psy11289 148 KQCKNSTVYRY 158 (159)
Q Consensus 148 ~~~~~~~~~~~ 158 (159)
.+-.++.++++
T Consensus 355 ~ri~Ts~LN~~ 365 (444)
T COG1160 355 RRISTSLLNRV 365 (444)
T ss_pred cccCHHHHHHH
Confidence 77766666554
No 199
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.48 E-value=5.5e-13 Score=102.05 Aligned_cols=109 Identities=18% Similarity=0.269 Sum_probs=74.4
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCCh----hhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCC
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR----NSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQV 105 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 105 (159)
.++.||||||+++|....-.....+|++++|+|++++ .+.+.+. .+ ... ...|+++|+||+|+.+....
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l-~~~--~i~~iiVVlNK~Dl~~~~~~ 157 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----AL-DII--GIKNIVIVQNKIDLVSKERA 157 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HH-HHc--CCCcEEEEEEeeccccchhH
Confidence 5678899999988765444445667999999999964 3333332 12 211 22478999999998653322
Q ss_pred --CHHHHHHHHHHc---CCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 106 --SSMDAQNVARQL---RIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 106 --~~~~~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
..++...+++.. +++++++||++|.|++++++.+...+..
T Consensus 158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 158 LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 123333444332 4789999999999999999999887643
No 200
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.48 E-value=2e-12 Score=105.25 Aligned_cols=127 Identities=13% Similarity=0.204 Sum_probs=91.2
Q ss_pred ccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHH----------HHHHh--hcCCEEEEEEECCChhhHHHHHH
Q psy11289 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAM----------REQYM--RSGEGFLLVFSVTDRNSFEEIYK 74 (159)
Q Consensus 7 f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------~~~~~--~~~~~ii~v~d~~~~~s~~~~~~ 74 (159)
...+++.++-+.....+..++.+ +++||+||..++... ...++ ..+|++++|+|.++.+.. ..
T Consensus 29 ~vgn~pGvTve~k~g~~~~~~~~--i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~---l~ 103 (772)
T PRK09554 29 RVGNWAGVTVERKEGQFSTTDHQ--VTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERN---LY 103 (772)
T ss_pred ccCCCCCceEeeEEEEEEcCceE--EEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhh---HH
Confidence 34566655555444445545555 556999999766321 22333 478999999999986543 23
Q ss_pred HHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 75 FHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 75 ~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
|..++.+ .++|+++++||+|+.+++.+. .+...+++.+|++++++||++|.|++++.+.+....
T Consensus 104 l~~ql~e----~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 104 LTLQLLE----LGIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred HHHHHHH----cCCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 4444443 468999999999987666653 456788889999999999999999999999887754
No 201
>PRK10218 GTP-binding protein; Provisional
Probab=99.47 E-value=2.6e-12 Score=102.08 Aligned_cols=122 Identities=22% Similarity=0.221 Sum_probs=86.2
Q ss_pred EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q psy11289 20 TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADL 99 (159)
Q Consensus 20 ~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 99 (159)
.+...++...+++++|||||+.+|...+..+++.+|++++|+|+++....+ ...++..... .++|.++++||+|+
T Consensus 58 ~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~----~gip~IVviNKiD~ 132 (607)
T PRK10218 58 AKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA----YGLKPIVVINKVDR 132 (607)
T ss_pred EEEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH----cCCCEEEEEECcCC
Confidence 455555556677888999999999999999999999999999998753222 2333333333 46799999999998
Q ss_pred CCcCCC-CHHHHHHHHH-------HcCCcEEEeCCCCCC----------CHHHHHHHHHHHHHhc
Q psy11289 100 DHQRQV-SSMDAQNVAR-------QLRIPYIECSAKVRI----------NVDQAFHELVRIVLLH 146 (159)
Q Consensus 100 ~~~~~~-~~~~~~~~~~-------~~~~~~~~~sa~~~~----------~i~~~~~~l~~~~~~~ 146 (159)
...+.- ..++...+.. +..+|++.+||++|. |+..+++.++..+...
T Consensus 133 ~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 133 PGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred CCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 643211 1233333332 234789999999998 5888888888776544
No 202
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.46 E-value=5.2e-13 Score=102.81 Aligned_cols=108 Identities=19% Similarity=0.160 Sum_probs=72.9
Q ss_pred CeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCcCC-
Q psy11289 27 DIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADLDHQRQ- 104 (159)
Q Consensus 27 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~- 104 (159)
.....+.|||+||+++|.......+..+|++++|+|+++.+++.... .+...+.... ...|+++++||+|+.+...
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~ 159 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEE 159 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHH
Confidence 33456778999999988665666678999999999999885432211 1111222222 2357999999999863211
Q ss_pred ---CCHHHHHHHHHHcC-----CcEEEeCCCCCCCHHHHH
Q psy11289 105 ---VSSMDAQNVARQLR-----IPYIECSAKVRINVDQAF 136 (159)
Q Consensus 105 ---~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~ 136 (159)
...++...+++..+ ++++++||++|.|+.+++
T Consensus 160 ~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 160 EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 11344556666665 569999999999998743
No 203
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.46 E-value=4.3e-12 Score=87.71 Aligned_cols=131 Identities=15% Similarity=0.174 Sum_probs=81.0
Q ss_pred cccccccccccceEEEE-EEECCeeEEEEEEeCCCc----------ccchHHHHHHhhcC---CEEEEEEECCChhhHHH
Q psy11289 6 YFVTDYDPTIEDSYTKQ-CVIDDIPARLDILDTAGQ----------EEFSAMREQYMRSG---EGFLLVFSVTDRNSFEE 71 (159)
Q Consensus 6 ~f~~~~~pt~~~~~~~~-~~~~~~~~~~~l~D~~g~----------~~~~~~~~~~~~~~---~~ii~v~d~~~~~s~~~ 71 (159)
.|...+.|+.+...... ... + ..+.||||||. +++..+...+++.+ +++++++|.+++.+...
T Consensus 48 ~~~~~~~~~~~~t~~~~~~~~-~--~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~ 124 (196)
T PRK00454 48 KNLARTSKTPGRTQLINFFEV-N--DKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELD 124 (196)
T ss_pred CCcccccCCCCceeEEEEEec-C--CeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHH
Confidence 35556666766332211 122 2 45778999994 34445555666544 67888899887644432
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCC--HHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 72 IYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVS--SMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 72 ~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
. ++...... .+.|+++++||+|+....... .+...........+++++||+++.|+.++++.+...+.
T Consensus 125 ~--~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 125 L--QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred H--HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 1 11111121 467999999999986432211 12233333333578999999999999999999887653
No 204
>PRK00089 era GTPase Era; Reviewed
Probab=99.46 E-value=2.7e-12 Score=94.26 Aligned_cols=129 Identities=17% Similarity=0.157 Sum_probs=81.7
Q ss_pred cccccccceEEEEEEECCeeEEEEEEeCCCcccch--------HHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 10 DYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFS--------AMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 10 ~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
..+.|+..........++ ..+.+|||||..... ......+.++|++++|+|++++.+ ....++.....
T Consensus 35 ~~~~tt~~~i~~i~~~~~--~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~--~~~~~i~~~l~ 110 (292)
T PRK00089 35 PKPQTTRHRIRGIVTEDD--AQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIG--PGDEFILEKLK 110 (292)
T ss_pred CCCCcccccEEEEEEcCC--ceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCC--hhHHHHHHHHh
Confidence 334454444433333333 456679999975432 223345678999999999988322 11222222222
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcC-CcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLR-IPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
..+.|+++|+||+|+.............+.+..+ .+++++||+++.|++++++++...+..
T Consensus 111 ---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 111 ---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred ---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Confidence 2468999999999986322222333444554444 569999999999999999999987743
No 205
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.45 E-value=1.7e-12 Score=97.12 Aligned_cols=142 Identities=16% Similarity=0.171 Sum_probs=100.9
Q ss_pred cccccccccccccceEEE----------EEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCCh-------
Q psy11289 4 ESYFVTDYDPTIEDSYTK----------QCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR------- 66 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~----------~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~------- 66 (159)
++-+.++|.||..|.... .+.+++ +.+.+||+||+...++.|..++.++++++||+|+++-
T Consensus 150 ~ri~~~~y~Pt~~Dil~~r~~T~Gi~~~~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed 227 (342)
T smart00275 150 DRIGDPDYVPTEQDILRSRVPTTGIQETAFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEED 227 (342)
T ss_pred HHHhCCCCCCCHHHhhheeCCccceEEEEEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhcc
Confidence 445567888887654311 122333 3456799999999999999999999999999999973
Q ss_pred ---hhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCc---------------CCCCHHHHHHHHHH-----c------
Q psy11289 67 ---NSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQ---------------RQVSSMDAQNVARQ-----L------ 117 (159)
Q Consensus 67 ---~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~---------------~~~~~~~~~~~~~~-----~------ 117 (159)
..+.+....+..+.+.....++|+++++||.|+..+ ..-+.+.+..+... .
T Consensus 228 ~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r 307 (342)
T smart00275 228 ESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRK 307 (342)
T ss_pred CcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCc
Confidence 456666667777776555568999999999997311 11233444443221 1
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 118 RIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 118 ~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.+-++.+||.+..++..+|+.+...+.+..
T Consensus 308 ~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 308 SIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred eEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 134688899999999999999988887655
No 206
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.44 E-value=1.1e-12 Score=101.07 Aligned_cols=107 Identities=18% Similarity=0.153 Sum_probs=69.3
Q ss_pred eeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCC---
Q psy11289 28 IPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQ--- 104 (159)
Q Consensus 28 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~--- 104 (159)
...++.||||||+++|.......++.+|++++|+|++++.++.....+...+.... ...|+++++||+|+.+...
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHH
Confidence 34456779999999886655555788999999999987322222222222222222 2246899999999864211
Q ss_pred -CCHHHHHHHHHHcC-----CcEEEeCCCCCCCHHHHH
Q psy11289 105 -VSSMDAQNVARQLR-----IPYIECSAKVRINVDQAF 136 (159)
Q Consensus 105 -~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~ 136 (159)
...++...+++..+ ++++++||++|.|+++..
T Consensus 160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 11234455555555 469999999999998744
No 207
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.43 E-value=1.4e-11 Score=87.68 Aligned_cols=127 Identities=24% Similarity=0.195 Sum_probs=84.2
Q ss_pred cccccccccceEEEEEEECCeeEEEEEEeCCCcccch-------HHHHHHhhcCCEEEEEEECCChh-hHHHHHHHHHH-
Q psy11289 8 VTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFS-------AMREQYMRSGEGFLLVFSVTDRN-SFEEIYKFHRQ- 78 (159)
Q Consensus 8 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~~~ii~v~d~~~~~-s~~~~~~~~~~- 78 (159)
..+|+.|+-+.....+.+++.. +++||+||..+.. ......++++|++++|+|+++++ ..+.+...+..
T Consensus 27 v~~~~~tT~~~~~g~~~~~~~~--i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~ 104 (233)
T cd01896 27 VAAYEFTTLTCVPGVLEYKGAK--IQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPEGHREILERELEGV 104 (233)
T ss_pred ccCCCCccccceEEEEEECCeE--EEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHc
Confidence 4556666655555566667655 5669999985432 22345688999999999998865 33333222211
Q ss_pred ---------------------------------------HHh-h-----------------------cCCCCCcEEEEEe
Q psy11289 79 ---------------------------------------ILR-V-----------------------KDRDEFPMLMVGN 95 (159)
Q Consensus 79 ---------------------------------------i~~-~-----------------------~~~~~~p~ivv~n 95 (159)
+++ + .....+|+++|+|
T Consensus 105 gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~N 184 (233)
T cd01896 105 GIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYN 184 (233)
T ss_pred CceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEE
Confidence 110 0 0112469999999
Q ss_pred CCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 96 KADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 96 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
|+|+.. .++...++.. .+++++||++|.|++++|+.+.+.+
T Consensus 185 K~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 185 KIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 999853 4455555543 4689999999999999999998865
No 208
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.43 E-value=1e-11 Score=82.98 Aligned_cols=109 Identities=17% Similarity=0.128 Sum_probs=73.3
Q ss_pred eEEEEEEeCCCcccchH--------HHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 29 PARLDILDTAGQEEFSA--------MREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~--------~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
...+.+||+||...... .....+..+|++++|+|++++.+.. ...+...+.. .+.|+++|+||+|+.
T Consensus 50 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~----~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 50 DAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEG-DEFILELLKK----SKTPVILVLNKIDLV 124 (168)
T ss_pred CeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCch-HHHHHHHHHH----hCCCEEEEEEchhcc
Confidence 45567799999764332 2344578899999999999872211 1222333333 357999999999986
Q ss_pred CcCCCCHHHHHHHHHHcC-CcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 101 HQRQVSSMDAQNVARQLR-IPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
.......+....++...+ .+++++|++++.|++++++.+.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 125 KDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred ccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 422222333344444443 679999999999999999998764
No 209
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.42 E-value=4.1e-12 Score=89.01 Aligned_cols=108 Identities=19% Similarity=0.110 Sum_probs=69.2
Q ss_pred EEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q psy11289 22 QCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDH 101 (159)
Q Consensus 22 ~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 101 (159)
.+..++.+ +.||||||+++|...+...++.+|++++|+|++++..-.. .... .+.... ...++|+|+||+|+..
T Consensus 71 ~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~-~~~~~~--~~~~iIvviNK~D~~~ 144 (208)
T cd04166 71 YFSTPKRK--FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHS-YILSLL--GIRHVVVAVNKMDLVD 144 (208)
T ss_pred EEecCCce--EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHH-HHHHHc--CCCcEEEEEEchhccc
Confidence 34445555 4569999999887666667889999999999987532211 1111 122221 1235788999999864
Q ss_pred cCCC----CHHHHHHHHHHcCC---cEEEeCCCCCCCHHHH
Q psy11289 102 QRQV----SSMDAQNVARQLRI---PYIECSAKVRINVDQA 135 (159)
Q Consensus 102 ~~~~----~~~~~~~~~~~~~~---~~~~~sa~~~~~i~~~ 135 (159)
.... ..++...+++.+++ +++++||++|.|+.+.
T Consensus 145 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 145 YSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 2211 11233455566664 4899999999998753
No 210
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.41 E-value=4.6e-12 Score=86.67 Aligned_cols=119 Identities=13% Similarity=0.184 Sum_probs=71.2
Q ss_pred ccccccccccceE-EEEEEECCeeEEEEEEeCCCcc----------cchHHHHHHhhc---CCEEEEEEECCChhhHHHH
Q psy11289 7 FVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQE----------EFSAMREQYMRS---GEGFLLVFSVTDRNSFEEI 72 (159)
Q Consensus 7 f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~~~~~---~~~ii~v~d~~~~~s~~~~ 72 (159)
+...+.++.+... ......++ .+.+|||||.. .+..+...+++. ++++++|+|++++-+....
T Consensus 43 ~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~ 119 (179)
T TIGR03598 43 KLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL 119 (179)
T ss_pred CcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH
Confidence 3444555555332 22223333 46779999952 344444556553 5899999999886554443
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCC--CHHHHHHHHHHcC--CcEEEeCCCCCCCHH
Q psy11289 73 YKFHRQILRVKDRDEFPMLMVGNKADLDHQRQV--SSMDAQNVARQLR--IPYIECSAKVRINVD 133 (159)
Q Consensus 73 ~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~sa~~~~~i~ 133 (159)
. ++..+.. .+.|+++++||+|+...... ..++.+......+ .+++++||++|.|++
T Consensus 120 ~-~~~~~~~----~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 120 E-MLEWLRE----RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred H-HHHHHHH----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 2 2222222 46899999999998643211 1233344444443 479999999999973
No 211
>KOG0462|consensus
Probab=99.41 E-value=3.1e-12 Score=98.23 Aligned_cols=120 Identities=22% Similarity=0.269 Sum_probs=91.3
Q ss_pred CCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCC
Q psy11289 26 DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQV 105 (159)
Q Consensus 26 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 105 (159)
+|..+.++++||||+.+|....+..+.-++|+|+|+|++..-.-+....++..+. .+..+|.|.||+|++..+
T Consensus 121 ~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~ad-- 193 (650)
T KOG0462|consen 121 DGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSAD-- 193 (650)
T ss_pred cCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCC--
Confidence 5888999999999999998888888899999999999998655555544433331 466789999999997644
Q ss_pred CHHHHHH-HHHHc---CCcEEEeCCCCCCCHHHHHHHHHHHHHhccccCCCC
Q psy11289 106 SSMDAQN-VARQL---RIPYIECSAKVRINVDQAFHELVRIVLLHTKQCKNS 153 (159)
Q Consensus 106 ~~~~~~~-~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~ 153 (159)
++.... +.+-+ .-+++.+||++|.|+.++++++++.+...+...+.+
T Consensus 194 -pe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~d~p 244 (650)
T KOG0462|consen 194 -PERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPPKGIRDAP 244 (650)
T ss_pred -HHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCCCCCCCcc
Confidence 233322 22223 345999999999999999999999987766655544
No 212
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.38 E-value=3.2e-12 Score=90.20 Aligned_cols=108 Identities=15% Similarity=0.148 Sum_probs=67.4
Q ss_pred EEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhh---H---HHHHHHHHHHHhhcCCCCCcEEEEE
Q psy11289 21 KQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNS---F---EEIYKFHRQILRVKDRDEFPMLMVG 94 (159)
Q Consensus 21 ~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p~ivv~ 94 (159)
..+..++.+ +.+|||||+.+|...+...++.+|++++|+|++++.. + ......+... ... ...|+++++
T Consensus 70 ~~~~~~~~~--i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~iiivv 144 (219)
T cd01883 70 AKFETEKYR--FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL--GVKQLIVAV 144 (219)
T ss_pred EEEeeCCeE--EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc--CCCeEEEEE
Confidence 344445544 5669999998877666666788999999999998521 1 1111212222 221 236899999
Q ss_pred eCCCCCCc--CCCCH----HHHHHHHHHcC-----CcEEEeCCCCCCCHH
Q psy11289 95 NKADLDHQ--RQVSS----MDAQNVARQLR-----IPYIECSAKVRINVD 133 (159)
Q Consensus 95 nK~D~~~~--~~~~~----~~~~~~~~~~~-----~~~~~~sa~~~~~i~ 133 (159)
||+|+... ..... ++...+.+..+ ++++++||++|.|++
T Consensus 145 NK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 145 NKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred EccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 99998632 11101 12222334443 569999999999987
No 213
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.37 E-value=1.4e-11 Score=97.97 Aligned_cols=104 Identities=20% Similarity=0.267 Sum_probs=74.2
Q ss_pred EEEEeCCCcccchHHHHHHhhcCCEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCC---
Q psy11289 32 LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD---RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQV--- 105 (159)
Q Consensus 32 ~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~--- 105 (159)
+.||||||++.|..++...++.+|++++|+|+++ +.+++.+.. +.. .++|+++++||+|+......
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~----~~vpiIvviNK~D~~~~~~~~~~ 144 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR----RKTPFVVAANKIDRIPGWKSTED 144 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH----cCCCEEEEEECcCCchhhhhhcC
Confidence 5779999999999988888899999999999997 666665532 111 46899999999998521110
Q ss_pred -CH--------HH-----------HHHHHHHc---------------CCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 106 -SS--------MD-----------AQNVARQL---------------RIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 106 -~~--------~~-----------~~~~~~~~---------------~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
.. .. ........ .++++++||++|.|++++++.+...+
T Consensus 145 ~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 145 APFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred chHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 00 00 00111111 25689999999999999998887543
No 214
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.37 E-value=9.3e-12 Score=87.48 Aligned_cols=70 Identities=23% Similarity=0.353 Sum_probs=55.5
Q ss_pred CCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 26 DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 26 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
++..+.+.+|||||+.+|......++..+|++++|+|+++..+... ..|+..... .++|+++++||+|+.
T Consensus 67 ~~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 67 KGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred CCCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 3567889999999999998888888999999999999988766533 344444322 358999999999974
No 215
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.36 E-value=1.7e-11 Score=92.66 Aligned_cols=125 Identities=18% Similarity=0.143 Sum_probs=92.2
Q ss_pred ccccccccccccceEEEEEEECCeeEEEEEEeCCCcccch--H-------HHHHHhhcCCEEEEEEECCChhhHH--HHH
Q psy11289 5 SYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFS--A-------MREQYMRSGEGFLLVFSVTDRNSFE--EIY 73 (159)
Q Consensus 5 ~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--~-------~~~~~~~~~~~ii~v~d~~~~~s~~--~~~ 73 (159)
...++++++++.|.......+.+..+.+ .||+|.+... . ....-+..||++|||+|....-+-. .+.
T Consensus 28 ~AIV~D~pGvTRDr~y~~~~~~~~~f~l--IDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia 105 (444)
T COG1160 28 IAIVSDTPGVTRDRIYGDAEWLGREFIL--IDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIA 105 (444)
T ss_pred eeEeecCCCCccCCccceeEEcCceEEE--EECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH
Confidence 4568899999999998888998888655 9999997432 1 2334468999999999998743322 222
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 74 KFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 74 ~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
.|+ . ..++|+++|+||+|... .++...-...+|+ ..+.+||..|.|+.+++++++..+
T Consensus 106 ~~L----r---~~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 106 KIL----R---RSKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred HHH----H---hcCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhc
Confidence 332 2 15689999999999642 2222333345675 499999999999999999999987
No 216
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.35 E-value=1.2e-11 Score=93.79 Aligned_cols=121 Identities=20% Similarity=0.243 Sum_probs=93.2
Q ss_pred CCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCC
Q psy11289 26 DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQV 105 (159)
Q Consensus 26 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 105 (159)
+|..+.++|+||||+-+|.-.....+.-|-|.|+|+|++..-.-+.+...+..+. .+..+|-|.||+|++..+.
T Consensus 72 ~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adp- 145 (603)
T COG0481 72 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADP- 145 (603)
T ss_pred CCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCH-
Confidence 6788999999999999987666777788999999999998755555554443332 4567888999999975332
Q ss_pred CHHHHHHHHHHcCCc---EEEeCCCCCCCHHHHHHHHHHHHHhccccCCCC
Q psy11289 106 SSMDAQNVARQLRIP---YIECSAKVRINVDQAFHELVRIVLLHTKQCKNS 153 (159)
Q Consensus 106 ~~~~~~~~~~~~~~~---~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~ 153 (159)
.....+...-.|++ .+.|||++|.||+++++.++..+-..+.....+
T Consensus 146 -ervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~~p 195 (603)
T COG0481 146 -ERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPDAP 195 (603)
T ss_pred -HHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCCCCCCc
Confidence 33445566667875 799999999999999999999887776555443
No 217
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.35 E-value=5.1e-11 Score=85.00 Aligned_cols=72 Identities=21% Similarity=0.295 Sum_probs=55.2
Q ss_pred EECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 24 VIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 24 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
.++...+++.+|||||+.+|...+..+++.+|++++|+|.++.... ....++..+.. .++|.++++||+|+.
T Consensus 58 ~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~ 129 (237)
T cd04168 58 SFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRA 129 (237)
T ss_pred EEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECcccc
Confidence 3333445677799999999988889999999999999999986443 33444444433 468999999999984
No 218
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.34 E-value=4.8e-11 Score=90.53 Aligned_cols=131 Identities=23% Similarity=0.248 Sum_probs=97.2
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHH--------HHHhhcCCEEEEEEECCChhhHHHHHH
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMR--------EQYMRSGEGFLLVFSVTDRNSFEEIYK 74 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~~~~~~~ii~v~d~~~~~s~~~~~~ 74 (159)
-++..+++.++|+.|.....+.++|.++++ .||+|........ ...++.||.+++|+|.+.+.+-.+..
T Consensus 240 ~d~AIVTdI~GTTRDviee~i~i~G~pv~l--~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~- 316 (454)
T COG0486 240 RDRAIVTDIAGTTRDVIEEDINLNGIPVRL--VDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLA- 316 (454)
T ss_pred CCceEecCCCCCccceEEEEEEECCEEEEE--EecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHH-
Confidence 356788999999999999999999999877 9999986544332 23478999999999999963332221
Q ss_pred HHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 75 FHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 75 ~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
+.. ....+.|+++|.||.|+........ .....+.+++.+|+++|.|++.+.+.+.+.+...
T Consensus 317 ----~~~-~~~~~~~~i~v~NK~DL~~~~~~~~-----~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 317 ----LIE-LLPKKKPIIVVLNKADLVSKIELES-----EKLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred ----HHH-hcccCCCEEEEEechhcccccccch-----hhccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 111 1225789999999999976443211 1112345799999999999999999999877665
No 219
>KOG1707|consensus
Probab=99.34 E-value=3.9e-12 Score=98.20 Aligned_cols=141 Identities=23% Similarity=0.328 Sum_probs=99.8
Q ss_pred ccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH-HHHHHHHhh
Q psy11289 5 SYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY-KFHRQILRV 82 (159)
Q Consensus 5 ~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~~~ 82 (159)
..|+++-+|-..... ...++.+..+ +.+.|++..+.-.-.....++.||++.++|+.+++++++.+. .|++.+.+.
T Consensus 32 eef~~~VP~rl~~i~IPadvtPe~vp--t~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~ 109 (625)
T KOG1707|consen 32 EEFVDAVPRRLPRILIPADVTPENVP--TSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQL 109 (625)
T ss_pred hhccccccccCCccccCCccCcCcCc--eEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcc
Confidence 345554444433221 3333434444 556999876665555677889999999999999999999998 899999887
Q ss_pred cCC-CCCcEEEEEeCCCCCCcCCCCHHH-HHHHHHHc-CCc-EEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 83 KDR-DEFPMLMVGNKADLDHQRQVSSMD-AQNVARQL-RIP-YIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 83 ~~~-~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~-~~~-~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.+. .++|+|+||||.|.......+.+. ...+-.++ .+. +++|||++..++.++|.-..+++....
T Consensus 110 ~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKaVihPt 178 (625)
T KOG1707|consen 110 FGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQKAVIHPT 178 (625)
T ss_pred cCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheeeccC
Confidence 643 478999999999986654443332 22222222 233 899999999999999999988877654
No 220
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.32 E-value=3.9e-11 Score=99.80 Aligned_cols=104 Identities=21% Similarity=0.319 Sum_probs=73.5
Q ss_pred EEEEeCCCcccchHHHHHHhhcCCEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCH-
Q psy11289 32 LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD---RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSS- 107 (159)
Q Consensus 32 ~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~- 107 (159)
+.||||||++.|..+....+..+|++++|+|+++ +.+++.+. .+.. .++|+++++||+|+......+.
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~----~~iPiIVViNKiDL~~~~~~~~~ 599 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ----YKTPFVVAANKIDLIPGWNISED 599 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH----cCCCEEEEEECCCCccccccccc
Confidence 6779999999998888888889999999999987 55555443 2222 3579999999999854222110
Q ss_pred -----------HHH-HHH----------HHHc---------------CCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 108 -----------MDA-QNV----------ARQL---------------RIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 108 -----------~~~-~~~----------~~~~---------------~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
+.. .++ ..+. .++++++||++|.|+++++..+..+.
T Consensus 600 ~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 600 EPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 000 011 0111 25799999999999999998876543
No 221
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.30 E-value=1.1e-10 Score=78.21 Aligned_cols=128 Identities=15% Similarity=0.218 Sum_probs=78.4
Q ss_pred ccccccccccccceE-EEEEEECCeeEEEEEEeCCCcc----------cchHHHHHHhh---cCCEEEEEEECCChhh--
Q psy11289 5 SYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQE----------EFSAMREQYMR---SGEGFLLVFSVTDRNS-- 68 (159)
Q Consensus 5 ~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~~~~---~~~~ii~v~d~~~~~s-- 68 (159)
+.+.+...++.+... ...+..++ .+.+||+||.. .+......++. +.+++++++|.++..+
T Consensus 22 ~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~ 98 (170)
T cd01876 22 RKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEI 98 (170)
T ss_pred CCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHh
Confidence 345555666665332 33333333 56779999953 23444455554 4578999999987632
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCC--HHHHHHHHH--HcCCcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 69 FEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVS--SMDAQNVAR--QLRIPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 69 ~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~--~~~~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
...+..|+.. .+.|+++++||+|+....... ........+ ....+++++||+++.|+.++++++.+.
T Consensus 99 ~~~~~~~l~~-------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 99 DLEMLDWLEE-------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHH-------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 2333344432 247999999999985322211 111222222 233579999999999999999999875
No 222
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.29 E-value=1.9e-10 Score=81.42 Aligned_cols=104 Identities=17% Similarity=0.143 Sum_probs=67.3
Q ss_pred EEEEEeCCCcccchHHHHHHh--hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHH
Q psy11289 31 RLDILDTAGQEEFSAMREQYM--RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSM 108 (159)
Q Consensus 31 ~~~l~D~~g~~~~~~~~~~~~--~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 108 (159)
.+.+.|+||+++|.......+ ..+|++++|+|+++...-.. ..++..+.. .++|+++|.||+|+.....+. +
T Consensus 85 ~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~~----~~ip~ivvvNK~D~~~~~~~~-~ 158 (224)
T cd04165 85 LVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLALA----LNIPVFVVVTKIDLAPANILQ-E 158 (224)
T ss_pred EEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCEEEEEECccccCHHHHH-H
Confidence 355699999998865443334 36899999999987543221 233333332 467999999999985432221 1
Q ss_pred HHHHHHHHc-----------------------------CCcEEEeCCCCCCCHHHHHHHHH
Q psy11289 109 DAQNVARQL-----------------------------RIPYIECSAKVRINVDQAFHELV 140 (159)
Q Consensus 109 ~~~~~~~~~-----------------------------~~~~~~~sa~~~~~i~~~~~~l~ 140 (159)
...++.+.+ .+|++.+||.+|.|++++...|.
T Consensus 159 ~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 159 TLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 112222211 14799999999999999887664
No 223
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=1.1e-10 Score=89.76 Aligned_cols=105 Identities=20% Similarity=0.316 Sum_probs=79.0
Q ss_pred EEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCH
Q psy11289 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD---RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSS 107 (159)
Q Consensus 31 ~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 107 (159)
.+.|.||||++-|..|+..-.+=+|++++|++++| |++.+.+. .. ...++|+++++||+|.++.. +
T Consensus 56 ~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~-------ha-k~a~vP~iVAiNKiDk~~~n---p 124 (509)
T COG0532 56 GITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAIN-------HA-KAAGVPIVVAINKIDKPEAN---P 124 (509)
T ss_pred eEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHH-------HH-HHCCCCEEEEEecccCCCCC---H
Confidence 34559999999999998888888999999999998 45555432 21 12689999999999987422 3
Q ss_pred HHHHHHHHHcC---------CcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 108 MDAQNVARQLR---------IPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 108 ~~~~~~~~~~~---------~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
.....-.+++| +.++++||++|.|++++++.++-+....
T Consensus 125 ~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 125 DKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAEVL 172 (509)
T ss_pred HHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHHHH
Confidence 33333333344 4589999999999999999988766544
No 224
>KOG0077|consensus
Probab=99.29 E-value=1.4e-11 Score=81.26 Aligned_cols=127 Identities=18% Similarity=0.280 Sum_probs=96.1
Q ss_pred ccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCC
Q psy11289 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRD 86 (159)
Q Consensus 7 f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 86 (159)
+.++.-|| +..+.+.|.+++. +|.+|+..-+..|..|+-.+|++++.+|+.|.+.|.+...-++.+.......
T Consensus 48 hvPTlHPT-----SE~l~Ig~m~ftt--~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la 120 (193)
T KOG0077|consen 48 HVPTLHPT-----SEELSIGGMTFTT--FDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLA 120 (193)
T ss_pred cCCCcCCC-----hHHheecCceEEE--EccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHh
Confidence 34444454 3445777877777 9999999888899999999999999999999999998887777777766667
Q ss_pred CCcEEEEEeCCCCCCcCCCCHHHHHHHH---HHcC--------------CcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 87 EFPMLMVGNKADLDHQRQVSSMDAQNVA---RQLR--------------IPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 87 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~---~~~~--------------~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
+.|+++.+||+|.+. .+++++.+... ...+ +..+.||...+.+.-+.|.|+...
T Consensus 121 ~vp~lilgnKId~p~--a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 121 TVPFLILGNKIDIPY--AASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred cCcceeecccccCCC--cccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence 899999999999864 34555543321 1111 236889999988888888887654
No 225
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.28 E-value=6.3e-11 Score=83.66 Aligned_cols=79 Identities=22% Similarity=0.278 Sum_probs=58.8
Q ss_pred CeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC-CcCCC
Q psy11289 27 DIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD-HQRQV 105 (159)
Q Consensus 27 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~-~~~~~ 105 (159)
++.+.+++|||||+++|.......++.+|++++|+|+++..+.+... .+..... .++|+++++||+|+. .+..+
T Consensus 70 ~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~-~l~~~~~----~~~p~ilviNKiD~~~~e~~~ 144 (222)
T cd01885 70 GNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET-VLRQALK----ERVKPVLVINKIDRLILELKL 144 (222)
T ss_pred CCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECCCcchhhhcC
Confidence 55788899999999999999999999999999999999876554422 2222222 457999999999975 33344
Q ss_pred CHHHH
Q psy11289 106 SSMDA 110 (159)
Q Consensus 106 ~~~~~ 110 (159)
+.+++
T Consensus 145 ~~~~~ 149 (222)
T cd01885 145 SPEEA 149 (222)
T ss_pred CHHHH
Confidence 44443
No 226
>COG1159 Era GTPase [General function prediction only]
Probab=99.26 E-value=1.7e-10 Score=83.13 Aligned_cols=133 Identities=16% Similarity=0.100 Sum_probs=87.6
Q ss_pred cccccccccccceEEEEEEECCeeEEEEEEeCCCcccchH--------HHHHHhhcCCEEEEEEECCChhhHHHHHHHHH
Q psy11289 6 YFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSA--------MREQYMRSGEGFLLVFSVTDRNSFEEIYKFHR 77 (159)
Q Consensus 6 ~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~ 77 (159)
..+...+.|+.......++.++.++ .+.||||..+-.. .....+.++|+++||.|++++-.-.+ ...++
T Consensus 32 sIvS~k~QTTR~~I~GI~t~~~~Qi--IfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d-~~il~ 108 (298)
T COG1159 32 SIVSPKPQTTRNRIRGIVTTDNAQI--IFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGD-EFILE 108 (298)
T ss_pred EeecCCcchhhhheeEEEEcCCceE--EEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccH-HHHHH
Confidence 3456677788877777777676665 4599999865422 22334678999999999988433211 11122
Q ss_pred HHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcC-CcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 78 QILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLR-IPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 78 ~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
.+.. .+.|++++.||.|.......-......+..... ..++++||++|.|++.+.+.+...+.+
T Consensus 109 ~lk~----~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 109 QLKK----TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred HHhh----cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 2322 457999999999987654421222222233333 359999999999999999988876643
No 227
>PRK12736 elongation factor Tu; Reviewed
Probab=99.23 E-value=3e-10 Score=86.75 Aligned_cols=110 Identities=16% Similarity=0.201 Sum_probs=71.3
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCcCCCC--
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFP-MLMVGNKADLDHQRQVS-- 106 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~~-- 106 (159)
..+.|+||||+++|......-+..+|++++|+|+++...-.. ...+..+.. .++| +|+++||+|+.+.....
T Consensus 75 ~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~ 149 (394)
T PRK12736 75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQ----VGVPYLVVFLNKVDLVDDEELLEL 149 (394)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHH
Confidence 345679999999886655555678999999999987422111 122222322 3567 67889999986432221
Q ss_pred -HHHHHHHHHHcC-----CcEEEeCCCCCC--------CHHHHHHHHHHHHH
Q psy11289 107 -SMDAQNVARQLR-----IPYIECSAKVRI--------NVDQAFHELVRIVL 144 (159)
Q Consensus 107 -~~~~~~~~~~~~-----~~~~~~sa~~~~--------~i~~~~~~l~~~~~ 144 (159)
.++...+.+..+ ++++++||++|. ++.++++.+.+.+.
T Consensus 150 i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 150 VEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 124445555554 579999999983 56777777766553
No 228
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.23 E-value=2.7e-10 Score=87.02 Aligned_cols=102 Identities=17% Similarity=0.181 Sum_probs=64.9
Q ss_pred EECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCCCCc
Q psy11289 24 VIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPML-MVGNKADLDHQ 102 (159)
Q Consensus 24 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~~~ 102 (159)
.++....++.||||||+++|..........+|++++|+|+++...-+. .+.+..+.. .++|.+ +++||+|+.+.
T Consensus 69 ~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~----~gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 69 EYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQ----VGVPYIVVFLNKCDMVDD 143 (394)
T ss_pred EEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCEEEEEEEecccCCH
Confidence 333334456679999999886655555678899999999987322211 122222222 356655 68999998643
Q ss_pred CCCC---HHHHHHHHHHcC-----CcEEEeCCCCCC
Q psy11289 103 RQVS---SMDAQNVARQLR-----IPYIECSAKVRI 130 (159)
Q Consensus 103 ~~~~---~~~~~~~~~~~~-----~~~~~~sa~~~~ 130 (159)
.... .++...+++.++ ++++++||++|.
T Consensus 144 ~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 144 EELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 2211 234555666655 689999999874
No 229
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.22 E-value=1.3e-10 Score=80.22 Aligned_cols=93 Identities=17% Similarity=0.191 Sum_probs=66.3
Q ss_pred chHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHH-----HHc
Q psy11289 43 FSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVA-----RQL 117 (159)
Q Consensus 43 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~ 117 (159)
+.+++..+++++|++++|+|++++.. .|...+... ..++|+++|+||+|+..... ..+....+. +..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF--GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGL 95 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh--cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhc
Confidence 46788889999999999999988642 122222222 24689999999999864332 233333343 233
Q ss_pred CC---cEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 118 RI---PYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 118 ~~---~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
+. +++++||++|.|++++++.+...+
T Consensus 96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 96 GLKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 43 589999999999999999998866
No 230
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.22 E-value=3.8e-10 Score=89.09 Aligned_cols=133 Identities=14% Similarity=0.198 Sum_probs=103.4
Q ss_pred ccccccccccccceEEEEEEECCeeEEEEEEeCCCcccch------HHHHHHh--hcCCEEEEEEECCChhhHHHHHHHH
Q psy11289 5 SYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFS------AMREQYM--RSGEGFLLVFSVTDRNSFEEIYKFH 76 (159)
Q Consensus 5 ~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~--~~~~~ii~v~d~~~~~s~~~~~~~~ 76 (159)
+..++||++.+-+..+..+...+..+++ .|.||..... ...+.|+ .++|+++-|.|+++.+.--.+ -
T Consensus 27 ~q~VgNwpGvTVEkkeg~~~~~~~~i~i--vDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyl---t 101 (653)
T COG0370 27 NQKVGNWPGVTVEKKEGKLKYKGHEIEI--VDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLYL---T 101 (653)
T ss_pred CceecCCCCeeEEEEEEEEEecCceEEE--EeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHHH---H
Confidence 4568899999988888888888888655 9999986542 2344554 367999999999986543332 2
Q ss_pred HHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 77 RQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 77 ~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.++.+ -+.|++++.|..|..+++.+.. +...+.+.+|+|++++||++|.|++++.+.+.+....+.
T Consensus 102 lQLlE----~g~p~ilaLNm~D~A~~~Gi~I-D~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 102 LQLLE----LGIPMILALNMIDEAKKRGIRI-DIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred HHHHH----cCCCeEEEeccHhhHHhcCCcc-cHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhccccc
Confidence 33434 4689999999999988777754 667899999999999999999999999999987655444
No 231
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.22 E-value=6.8e-10 Score=77.02 Aligned_cols=98 Identities=17% Similarity=0.198 Sum_probs=65.2
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCcCCC---
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFP-MLMVGNKADLDHQRQV--- 105 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~--- 105 (159)
.++.+.||||+.+|.......+..+|++++|+|++..-.-. ....+..+.. .++| +|++.||+|+......
T Consensus 65 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~ 139 (195)
T cd01884 65 RHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQ----VGVPYIVVFLNKADMVDDEELLEL 139 (195)
T ss_pred eEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHH
Confidence 34566999999988776677778999999999998742221 1222233322 3456 7789999998532221
Q ss_pred CHHHHHHHHHHcC-----CcEEEeCCCCCCCH
Q psy11289 106 SSMDAQNVARQLR-----IPYIECSAKVRINV 132 (159)
Q Consensus 106 ~~~~~~~~~~~~~-----~~~~~~sa~~~~~i 132 (159)
..++...+....| ++++++||++|.|+
T Consensus 140 ~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 140 VEMEVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 1223444555544 57999999999885
No 232
>KOG1145|consensus
Probab=99.20 E-value=5.5e-10 Score=86.16 Aligned_cols=109 Identities=22% Similarity=0.282 Sum_probs=82.1
Q ss_pred CCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCc
Q psy11289 26 DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD---RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQ 102 (159)
Q Consensus 26 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~ 102 (159)
+|+.+++ -||||+.-|..|+..-.+-+|++++|+.++| |.+.+.+ ... ...++|+|+..||+|.++.
T Consensus 199 ~G~~iTF--LDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaI-------khA-k~A~VpiVvAinKiDkp~a 268 (683)
T KOG1145|consen 199 SGKSITF--LDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAI-------KHA-KSANVPIVVAINKIDKPGA 268 (683)
T ss_pred CCCEEEE--ecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHH-------HHH-HhcCCCEEEEEeccCCCCC
Confidence 6777666 9999999999999999999999999999988 4444443 232 2368999999999997642
Q ss_pred CCCCHHHHH-HHH------HHcC--CcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 103 RQVSSMDAQ-NVA------RQLR--IPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 103 ~~~~~~~~~-~~~------~~~~--~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
+++... ++. +++| +.++++||++|.|++.+-+.++-+..-+-
T Consensus 269 ---~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae~md 319 (683)
T KOG1145|consen 269 ---NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAEVMD 319 (683)
T ss_pred ---CHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHHHhh
Confidence 233333 332 2333 56999999999999999999887665443
No 233
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.20 E-value=4.6e-10 Score=88.35 Aligned_cols=72 Identities=21% Similarity=0.250 Sum_probs=52.6
Q ss_pred EECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 24 VIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 24 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
.++...+++++|||||+.+|.......++.+|++++|+|+++.-.. ....++... ...++|+++++||+|+.
T Consensus 73 ~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~----~~~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 73 QFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC----RLRDTPIFTFINKLDRD 144 (526)
T ss_pred EEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH----HhcCCCEEEEEECCccc
Confidence 3443446677799999999988778888999999999999875322 223333332 22578999999999974
No 234
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.20 E-value=7.4e-11 Score=78.95 Aligned_cols=95 Identities=19% Similarity=0.213 Sum_probs=65.8
Q ss_pred chHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEE
Q psy11289 43 FSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122 (159)
Q Consensus 43 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 122 (159)
++.+.+...+++|++++|+|++++...... .+...+ . ..++|+++|+||+|+.+.... .....+....+.+++
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~-~---~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~ 74 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYV-L---ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVV 74 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHH-H---hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEE
Confidence 356778888899999999999886543221 121112 1 146899999999998542211 111133444567899
Q ss_pred EeCCCCCCCHHHHHHHHHHHHH
Q psy11289 123 ECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 123 ~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
.+||+++.|++++++.+.+.+.
T Consensus 75 ~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 75 YVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEEccccccHHHHHHHHHHHHh
Confidence 9999999999999999987764
No 235
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.20 E-value=2.1e-10 Score=84.11 Aligned_cols=87 Identities=17% Similarity=0.093 Sum_probs=67.8
Q ss_pred HHhhcCCEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCC
Q psy11289 49 QYMRSGEGFLLVFSVTDRN-SFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAK 127 (159)
Q Consensus 49 ~~~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 127 (159)
..+.++|.+++|+|++++. ++..+.+|+..+.. .++|+++|+||+|+.+.. .......+....+.+++.+||+
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECC
Confidence 4578999999999999988 88888888876654 468999999999986531 1112233345578899999999
Q ss_pred CCCCHHHHHHHHHH
Q psy11289 128 VRINVDQAFHELVR 141 (159)
Q Consensus 128 ~~~~i~~~~~~l~~ 141 (159)
++.|+++++..+..
T Consensus 148 ~g~gi~~L~~~L~~ 161 (287)
T cd01854 148 TGEGLDELREYLKG 161 (287)
T ss_pred CCccHHHHHhhhcc
Confidence 99999999887753
No 236
>PRK00098 GTPase RsgA; Reviewed
Probab=99.18 E-value=2.9e-10 Score=83.75 Aligned_cols=86 Identities=19% Similarity=0.168 Sum_probs=64.7
Q ss_pred HhhcCCEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCC
Q psy11289 50 YMRSGEGFLLVFSVTDRNSFEE-IYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKV 128 (159)
Q Consensus 50 ~~~~~~~ii~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 128 (159)
.+.++|.+++|+|++++++... +.+|+..+.. .++|+++|+||+|+.+... .........+..+++++++||++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~ 151 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKE 151 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCC
Confidence 3589999999999998876544 4677766543 5689999999999863221 12233445566789999999999
Q ss_pred CCCHHHHHHHHH
Q psy11289 129 RINVDQAFHELV 140 (159)
Q Consensus 129 ~~~i~~~~~~l~ 140 (159)
+.|++++++.+.
T Consensus 152 g~gi~~L~~~l~ 163 (298)
T PRK00098 152 GEGLDELKPLLA 163 (298)
T ss_pred CccHHHHHhhcc
Confidence 999999988764
No 237
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.18 E-value=3.9e-10 Score=87.25 Aligned_cols=102 Identities=16% Similarity=0.183 Sum_probs=70.7
Q ss_pred CeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHH-------HHHHHHHHHHhhcCCCCC-cEEEEEeCCC
Q psy11289 27 DIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFE-------EIYKFHRQILRVKDRDEF-PMLMVGNKAD 98 (159)
Q Consensus 27 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~-------~~~~~~~~i~~~~~~~~~-p~ivv~nK~D 98 (159)
.....+.+.|+||+++|.......+..+|++|+|+|+++. +|+ ...+.+. +... .++ ++|+++||+|
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~-~~~~---~gi~~iIV~vNKmD 156 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHAL-LAFT---LGVKQMICCCNKMD 156 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHH-HHHH---cCCCcEEEEEEccc
Confidence 3445667799999999988888888999999999999873 221 2222222 2221 456 4788999999
Q ss_pred CCCcCCCC-------HHHHHHHHHHcC-----CcEEEeCCCCCCCHHH
Q psy11289 99 LDHQRQVS-------SMDAQNVARQLR-----IPYIECSAKVRINVDQ 134 (159)
Q Consensus 99 ~~~~~~~~-------~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~ 134 (159)
+.+. .++ .++...++++.| ++++++||++|+|+.+
T Consensus 157 ~~~~-~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 157 ATTP-KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred CCch-hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 7521 111 345566677666 5699999999999854
No 238
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.18 E-value=1.3e-09 Score=79.07 Aligned_cols=93 Identities=16% Similarity=0.196 Sum_probs=61.3
Q ss_pred EEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 21 KQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 21 ~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
....++...+++++|||||+.+|.......++.+|++++|+|+++.... ....++.... ..++|+++++||+|+.
T Consensus 62 ~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~----~~~~P~iivvNK~D~~ 136 (267)
T cd04169 62 SVMQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCR----LRGIPIITFINKLDRE 136 (267)
T ss_pred EEEEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHH----hcCCCEEEEEECCccC
Confidence 3334445556778899999999887777888999999999999875332 2223333322 2568999999999975
Q ss_pred CcCCCCHHHHHHHHHHcCCc
Q psy11289 101 HQRQVSSMDAQNVARQLRIP 120 (159)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~ 120 (159)
.... .+...++...++.+
T Consensus 137 ~a~~--~~~~~~l~~~l~~~ 154 (267)
T cd04169 137 GRDP--LELLDEIEEELGID 154 (267)
T ss_pred CCCH--HHHHHHHHHHHCCC
Confidence 4321 12233444455544
No 239
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.16 E-value=6.3e-10 Score=86.13 Aligned_cols=111 Identities=15% Similarity=0.210 Sum_probs=73.3
Q ss_pred EEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCC--HH
Q psy11289 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVS--SM 108 (159)
Q Consensus 31 ~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~ 108 (159)
.+.|.|+||+++|......-+..+|++++|+|++++..-....+.+ .+.... .-.|+|++.||+|+.+...+. .+
T Consensus 118 ~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~i~~~l--gi~~iIVvlNKiDlv~~~~~~~~~~ 194 (460)
T PTZ00327 118 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-AAVEIM--KLKHIIILQNKIDLVKEAQAQDQYE 194 (460)
T ss_pred eEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-HHHHHc--CCCcEEEEEecccccCHHHHHHHHH
Confidence 4677999999998766666677899999999998741111111111 222322 224689999999986422211 12
Q ss_pred HHHHHHHH---cCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 109 DAQNVARQ---LRIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 109 ~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
+...+.+. .+.+++++||++|.|++.+++.|...+.
T Consensus 195 ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 195 EIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 22333322 2578999999999999999999887554
No 240
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.15 E-value=4.5e-10 Score=73.47 Aligned_cols=99 Identities=18% Similarity=0.149 Sum_probs=72.4
Q ss_pred EEEeCCCcc----cchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHH
Q psy11289 33 DILDTAGQE----EFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSM 108 (159)
Q Consensus 33 ~l~D~~g~~----~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 108 (159)
.++||||.- +|.+..-....+||.+++|.|++++.+.-. +.+... -+.|+|-|+||+|+.. .....+
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p-----P~fa~~---f~~pvIGVITK~Dl~~-~~~~i~ 109 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFP-----PGFASM---FNKPVIGVITKIDLPS-DDANIE 109 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC-----chhhcc---cCCCEEEEEECccCcc-chhhHH
Confidence 348999973 233334444679999999999998754322 122222 3579999999999973 233466
Q ss_pred HHHHHHHHcCCc-EEEeCCCCCCCHHHHHHHHH
Q psy11289 109 DAQNVARQLRIP-YIECSAKVRINVDQAFHELV 140 (159)
Q Consensus 109 ~~~~~~~~~~~~-~~~~sa~~~~~i~~~~~~l~ 140 (159)
.++++.+..|+. +|++|+.+|.|++++.+.|-
T Consensus 110 ~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 110 RAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred HHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 777888888876 89999999999999998763
No 241
>PRK12289 GTPase RsgA; Reviewed
Probab=99.15 E-value=2.1e-10 Score=85.93 Aligned_cols=91 Identities=16% Similarity=0.203 Sum_probs=67.2
Q ss_pred HHHHHHhhcCCEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEE
Q psy11289 45 AMREQYMRSGEGFLLVFSVTDRN-SFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIE 123 (159)
Q Consensus 45 ~~~~~~~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (159)
.+....+.++|.+++|+|+.++. +...+.+|+..+.. .++|+++|+||+|+...... +........+|++++.
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~ 154 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLF 154 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEE
Confidence 34455689999999999999876 45566777765522 57899999999998642211 1222333467889999
Q ss_pred eCCCCCCCHHHHHHHHHH
Q psy11289 124 CSAKVRINVDQAFHELVR 141 (159)
Q Consensus 124 ~sa~~~~~i~~~~~~l~~ 141 (159)
+||+++.|++++++.+..
T Consensus 155 iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 155 ISVETGIGLEALLEQLRN 172 (352)
T ss_pred EEcCCCCCHHHHhhhhcc
Confidence 999999999999988864
No 242
>KOG0082|consensus
Probab=99.13 E-value=5.1e-10 Score=83.03 Aligned_cols=144 Identities=17% Similarity=0.208 Sum_probs=101.7
Q ss_pred ccccccccccccccceE----------EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChh-----
Q psy11289 3 IESYFVTDYDPTIEDSY----------TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRN----- 67 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~----------~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~----- 67 (159)
+++-..++|.||..|.. ...+++.+ ..+.++|+|||..-+..|.+++.+++++|||.++++-+
T Consensus 160 l~rI~~~~Y~PT~~DIL~~R~~T~GI~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~E 237 (354)
T KOG0082|consen 160 LDRISSPDYVPTEQDILRSRVPTTGIVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEE 237 (354)
T ss_pred HHHhcCCCCCCCHHHHHhhccCcCCeeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhccc
Confidence 45567788888877543 22233344 34556999999888889999999999999999998743
Q ss_pred -----hHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCc--------------CC-CCHHHHHHHHHHc----------
Q psy11289 68 -----SFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQ--------------RQ-VSSMDAQNVARQL---------- 117 (159)
Q Consensus 68 -----s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~--------------~~-~~~~~~~~~~~~~---------- 117 (159)
.+.+...++..|.+...-.++++|+..||.|+-++ .+ -+.+++..+.+..
T Consensus 238 D~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k 317 (354)
T KOG0082|consen 238 DETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDK 317 (354)
T ss_pred ccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCC
Confidence 23444556666666655568999999999998321 11 2344444433211
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 118 RIPYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 118 ~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
.+-++.++|.+..+|+.+|+.+...+.+...
T Consensus 318 ~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nl 348 (354)
T KOG0082|consen 318 KIYVHFTCATDTQNVQFVFDAVTDTIIQNNL 348 (354)
T ss_pred cceEEEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence 2447788999999999999999998876653
No 243
>PRK09866 hypothetical protein; Provisional
Probab=99.12 E-value=2.6e-09 Score=84.55 Aligned_cols=109 Identities=23% Similarity=0.284 Sum_probs=71.9
Q ss_pred EEEEEEeCCCcccc-----hHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCC
Q psy11289 30 ARLDILDTAGQEEF-----SAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQ 104 (159)
Q Consensus 30 ~~~~l~D~~g~~~~-----~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~ 104 (159)
..+.|.||||.... .......+.++|+|+||+|.++.-+..+. ...+.+.+.. .+.|+++|+||+|+.+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~~--K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAVG--QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhcC--CCCCEEEEEEcccCCCccc
Confidence 44566999998642 22344568899999999999875333321 1223333321 2359999999999864333
Q ss_pred CCHHHHHHHHH----HcCC---cEEEeCCCCCCCHHHHHHHHHH
Q psy11289 105 VSSMDAQNVAR----QLRI---PYIECSAKVRINVDQAFHELVR 141 (159)
Q Consensus 105 ~~~~~~~~~~~----~~~~---~~~~~sa~~~~~i~~~~~~l~~ 141 (159)
-..+....+.. ..++ .++++||++|.|++.+++.+..
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 23444444432 2223 4999999999999999998876
No 244
>KOG1489|consensus
Probab=99.12 E-value=9.8e-10 Score=79.76 Aligned_cols=107 Identities=20% Similarity=0.319 Sum_probs=77.7
Q ss_pred EEEEeCCCcccchHH----HHHH---hhcCCEEEEEEECCCh---hhHHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCC
Q psy11289 32 LDILDTAGQEEFSAM----REQY---MRSGEGFLLVFSVTDR---NSFEEIYKFHRQILRVKD-RDEFPMLMVGNKADLD 100 (159)
Q Consensus 32 ~~l~D~~g~~~~~~~----~~~~---~~~~~~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~~ 100 (159)
+.+=|+||..+-.++ .-.| ++.++.++||+|++.+ +.++++..+..++..+.. ..+.|.++|+||+|++
T Consensus 246 ~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 246 ITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred eEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 555999998654332 2223 5678999999999998 788887776666666553 3578999999999986
Q ss_pred CcCCCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHH
Q psy11289 101 HQRQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVR 141 (159)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~ 141 (159)
+.+ .....++++.+.- .++++||++++|+.++++.+-+
T Consensus 326 eae---~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 326 EAE---KNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred hHH---HHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence 311 1123556666554 4999999999999999887644
No 245
>COG2262 HflX GTPases [General function prediction only]
Probab=99.11 E-value=6.7e-09 Score=77.85 Aligned_cols=134 Identities=19% Similarity=0.199 Sum_probs=90.7
Q ss_pred cccccccccccceEEEEEEEC-CeeEEEEEEeCCCcccc--hHHHHHH------hhcCCEEEEEEECCChhhHHHHHHHH
Q psy11289 6 YFVTDYDPTIEDSYTKQCVID-DIPARLDILDTAGQEEF--SAMREQY------MRSGEGFLLVFSVTDRNSFEEIYKFH 76 (159)
Q Consensus 6 ~f~~~~~pt~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~--~~~~~~~------~~~~~~ii~v~d~~~~~s~~~~~~~~ 76 (159)
.+..+.-.++-+...+.+.+. |.++.+ -||.|..+. ..+.+.| ...||.++.|+|+++|...+++..-.
T Consensus 217 ~~~~d~LFATLdpttR~~~l~~g~~vlL--tDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~ 294 (411)
T COG2262 217 VYVADQLFATLDPTTRRIELGDGRKVLL--TDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVE 294 (411)
T ss_pred eeccccccccccCceeEEEeCCCceEEE--ecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHH
Confidence 344455555555556666665 566555 999998654 2233433 46899999999999997777766544
Q ss_pred HHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 77 RQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 77 ~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.-+ ...+..++|+|+|.||+|+..... ....+..... ..+.+||++|.|++.+.+.|...+....
T Consensus 295 ~vL-~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~gl~~L~~~i~~~l~~~~ 359 (411)
T COG2262 295 DVL-AEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGEGLDLLRERIIELLSGLR 359 (411)
T ss_pred HHH-HHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCcCHHHHHHHHHHHhhhcc
Confidence 444 333445699999999999754332 1111111112 5899999999999999999998886443
No 246
>PRK12735 elongation factor Tu; Reviewed
Probab=99.11 E-value=2e-09 Score=82.29 Aligned_cols=109 Identities=15% Similarity=0.186 Sum_probs=70.7
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCCCCcCCC---
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPML-MVGNKADLDHQRQV--- 105 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~~~~~~--- 105 (159)
.++.|+||||+++|......-+..+|++++|+|+.+...-+ ..+.+..+.. .++|.+ +++||+|+.+....
T Consensus 75 ~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~ 149 (396)
T PRK12735 75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ----VGVPYIVVFLNKCDMVDDEELLEL 149 (396)
T ss_pred cEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHH
Confidence 34567999999888665556677899999999998742221 1222222222 457755 57999998642221
Q ss_pred CHHHHHHHHHHcC-----CcEEEeCCCCCC----------CHHHHHHHHHHHH
Q psy11289 106 SSMDAQNVARQLR-----IPYIECSAKVRI----------NVDQAFHELVRIV 143 (159)
Q Consensus 106 ~~~~~~~~~~~~~-----~~~~~~sa~~~~----------~i~~~~~~l~~~~ 143 (159)
..++...+.+.++ ++++++||++|. ++..+++.+...+
T Consensus 150 ~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 150 VEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred HHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 1124445555543 679999999984 5677777776654
No 247
>PRK13351 elongation factor G; Reviewed
Probab=99.07 E-value=4.3e-09 Score=85.66 Aligned_cols=67 Identities=27% Similarity=0.357 Sum_probs=53.7
Q ss_pred eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
..++++|||||+.+|...+..+++.+|++++|+|+++..+......| ..+.. .++|+++++||+|+.
T Consensus 72 ~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~----~~~p~iiviNK~D~~ 138 (687)
T PRK13351 72 NHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR----YGIPRLIFINKMDRV 138 (687)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh----cCCCEEEEEECCCCC
Confidence 45677799999999988899999999999999999987666554444 33322 468999999999985
No 248
>PRK12288 GTPase RsgA; Reviewed
Probab=99.07 E-value=1.6e-09 Score=81.22 Aligned_cols=87 Identities=15% Similarity=0.085 Sum_probs=67.2
Q ss_pred hhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCC-CHHHHHHHHHHcCCcEEEeCCCCC
Q psy11289 51 MRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQV-SSMDAQNVARQLRIPYIECSAKVR 129 (159)
Q Consensus 51 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~sa~~~ 129 (159)
..|+|.+++|++.+.+.++..+.+|+..+.. .++|+++|+||+|+.+.... .........+..|++++++||+++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg 193 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET----LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTG 193 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4679999999999988899999999865432 56899999999999643211 112223344567889999999999
Q ss_pred CCHHHHHHHHHH
Q psy11289 130 INVDQAFHELVR 141 (159)
Q Consensus 130 ~~i~~~~~~l~~ 141 (159)
.|++++++.+..
T Consensus 194 ~GideL~~~L~~ 205 (347)
T PRK12288 194 EGLEELEAALTG 205 (347)
T ss_pred cCHHHHHHHHhh
Confidence 999999998864
No 249
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.06 E-value=1.4e-09 Score=82.15 Aligned_cols=95 Identities=22% Similarity=0.294 Sum_probs=70.9
Q ss_pred cccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHH----HHHH
Q psy11289 40 QEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQ----NVAR 115 (159)
Q Consensus 40 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~----~~~~ 115 (159)
.++|..+...+.++++++++|+|+.+.. ..|...+.+.. .+.|+++|+||+|+.. +....+... ++++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~--~~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV--GGNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh--CCCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHH
Confidence 4678888888889999999999997743 23445555543 3679999999999864 333334443 3466
Q ss_pred HcCC---cEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 116 QLRI---PYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 116 ~~~~---~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
+.++ .++.+||++|.|++++++.+.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 6776 48999999999999999998654
No 250
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.06 E-value=2.9e-09 Score=83.05 Aligned_cols=102 Identities=19% Similarity=0.095 Sum_probs=63.9
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHH
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMD 109 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 109 (159)
.++.|+||||+++|......-+..+|++++|+|+++.-.-.....+ .+.... ...|+++++||+|+.+...-..++
T Consensus 107 ~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~--~l~~~l--g~~~iIvvvNKiD~~~~~~~~~~~ 182 (474)
T PRK05124 107 RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS--FIATLL--GIKHLVVAVNKMDLVDYSEEVFER 182 (474)
T ss_pred cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH--HHHHHh--CCCceEEEEEeeccccchhHHHHH
Confidence 3466799999998865555557899999999999764221111111 122222 124789999999986422111112
Q ss_pred H----HHHHHHcC----CcEEEeCCCCCCCHHHH
Q psy11289 110 A----QNVARQLR----IPYIECSAKVRINVDQA 135 (159)
Q Consensus 110 ~----~~~~~~~~----~~~~~~sa~~~~~i~~~ 135 (159)
. ..+.+..+ ++++++||++|.|+.++
T Consensus 183 i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 183 IREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 2 22333333 67999999999999764
No 251
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.05 E-value=3.5e-09 Score=81.20 Aligned_cols=100 Identities=19% Similarity=0.119 Sum_probs=64.1
Q ss_pred EEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCH---
Q psy11289 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSS--- 107 (159)
Q Consensus 31 ~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~--- 107 (159)
++.|+||||+++|......-+..+|++++|+|++....-+....| .+.... ...++++++||+|+.+...-..
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~--~~~~~~--~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS--YIASLL--GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH--HHHHHc--CCCcEEEEEEecccccchHHHHHHH
Confidence 566799999999876566667899999999999764322111111 122222 2236889999999864221111
Q ss_pred -HHHHHHHHHcC---CcEEEeCCCCCCCHHH
Q psy11289 108 -MDAQNVARQLR---IPYIECSAKVRINVDQ 134 (159)
Q Consensus 108 -~~~~~~~~~~~---~~~~~~sa~~~~~i~~ 134 (159)
++...+.+..+ ++++++||++|.|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 12223334444 4699999999999885
No 252
>PRK13768 GTPase; Provisional
Probab=99.02 E-value=3.8e-09 Score=76.17 Aligned_cols=109 Identities=16% Similarity=0.206 Sum_probs=69.8
Q ss_pred EEEEEeCCCcccc---hHHHHHHhhc-----CCEEEEEEECCChhhHHHH--HHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 31 RLDILDTAGQEEF---SAMREQYMRS-----GEGFLLVFSVTDRNSFEEI--YKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 31 ~~~l~D~~g~~~~---~~~~~~~~~~-----~~~ii~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
.+.+||+||+... ...+..+.+. ++++++++|++......+. ..|+....... .++|+++|+||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~--~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR--LGLPQIPVLNKADLL 175 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH--cCCCEEEEEEhHhhc
Confidence 3556999998663 3344444333 8999999999764433222 23332222222 468999999999986
Q ss_pred CcCCCCHHHHHH----------------------------HHHHcC--CcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 101 HQRQVSSMDAQN----------------------------VARQLR--IPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 101 ~~~~~~~~~~~~----------------------------~~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
..... +.... ..+..+ .+++++|++++.|++++++++.+.+
T Consensus 176 ~~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 176 SEEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred CchhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 53322 11111 122334 5789999999999999999998765
No 253
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.00 E-value=1.4e-08 Score=72.04 Aligned_cols=121 Identities=15% Similarity=0.169 Sum_probs=77.8
Q ss_pred CeeEEEEEEeCCCcccchH-----HHHHHhhcCCEEEEEEECCChhhH---HHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy11289 27 DIPARLDILDTAGQEEFSA-----MREQYMRSGEGFLLVFSVTDRNSF---EEIYKFHRQILRVKDRDEFPMLMVGNKAD 98 (159)
Q Consensus 27 ~~~~~~~l~D~~g~~~~~~-----~~~~~~~~~~~ii~v~d~~~~~s~---~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 98 (159)
...+.+++||+||+..+.. ..+..++++.++|+|+|+.+.+.. ..+...+..+.++. ++..+-+..+|+|
T Consensus 45 ~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s--p~~~v~vfiHK~D 122 (232)
T PF04670_consen 45 LSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYS--PNIKVFVFIHKMD 122 (232)
T ss_dssp TTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHS--TT-EEEEEEE-CC
T ss_pred CCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhC--CCCeEEEEEeecc
Confidence 3445678899999976533 367778999999999999854433 33344455555554 7889999999999
Q ss_pred CCCcCC--CC----HHHHHHHHHHcC---CcEEEeCCCCCCCHHHHHHHHHHHHHhccccC
Q psy11289 99 LDHQRQ--VS----SMDAQNVARQLR---IPYIECSAKVRINVDQAFHELVRIVLLHTKQC 150 (159)
Q Consensus 99 ~~~~~~--~~----~~~~~~~~~~~~---~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~ 150 (159)
+..+.. .. .+...+.+...+ +.++.+|.-+ ..+.++|..++..+....+.-
T Consensus 123 ~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP~~~~l 182 (232)
T PF04670_consen 123 LLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLIPNLSTL 182 (232)
T ss_dssp CS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTSTTHCCC
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHcccHHHH
Confidence 853211 10 112223344445 6688888887 689999999998887665443
No 254
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.96 E-value=1.3e-08 Score=77.46 Aligned_cols=124 Identities=19% Similarity=0.247 Sum_probs=84.8
Q ss_pred EECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcC
Q psy11289 24 VIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQR 103 (159)
Q Consensus 24 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 103 (159)
.++-...++++.||||+..|....+..++.+|++++++|+.+.. ..+..-.+++.++ .+.+.|+|.||+|.+..+
T Consensus 62 av~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Ar 136 (603)
T COG1217 62 AVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA----LGLKPIVVINKIDRPDAR 136 (603)
T ss_pred eeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHH----cCCCcEEEEeCCCCCCCC
Confidence 33333356777999999999999999999999999999998732 1111112233333 456778899999987655
Q ss_pred CCC-HHHHHHHHH-------HcCCcEEEeCCCCC----------CCHHHHHHHHHHHHHhccccCCC
Q psy11289 104 QVS-SMDAQNVAR-------QLRIPYIECSAKVR----------INVDQAFHELVRIVLLHTKQCKN 152 (159)
Q Consensus 104 ~~~-~~~~~~~~~-------~~~~~~~~~sa~~~----------~~i~~~~~~l~~~~~~~~~~~~~ 152 (159)
.-. .++...+.- ++++|++..|++.| .++..+|+.|++.+.......+.
T Consensus 137 p~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~ 203 (603)
T COG1217 137 PDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDE 203 (603)
T ss_pred HHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCCC
Confidence 321 233444443 44588999999887 36888888888877665544333
No 255
>CHL00071 tufA elongation factor Tu
Probab=98.95 E-value=2.2e-08 Score=76.91 Aligned_cols=96 Identities=16% Similarity=0.207 Sum_probs=63.1
Q ss_pred EEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCcCCCC---
Q psy11289 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFP-MLMVGNKADLDHQRQVS--- 106 (159)
Q Consensus 31 ~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~~--- 106 (159)
++.|.||||+.+|.......+..+|++++|+|+...-.-+ ....+..+.. .++| +|++.||+|+.+.....
T Consensus 76 ~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~q-t~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~ 150 (409)
T CHL00071 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELV 150 (409)
T ss_pred EEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHH
Confidence 4556999999888666666678999999999998643221 1222222222 4568 77899999986532211
Q ss_pred HHHHHHHHHHcC-----CcEEEeCCCCCCC
Q psy11289 107 SMDAQNVARQLR-----IPYIECSAKVRIN 131 (159)
Q Consensus 107 ~~~~~~~~~~~~-----~~~~~~sa~~~~~ 131 (159)
.++...+.+..+ ++++++||.+|.|
T Consensus 151 ~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 151 ELEVRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence 123444555544 6799999999864
No 256
>PRK00049 elongation factor Tu; Reviewed
Probab=98.94 E-value=2.9e-08 Score=75.92 Aligned_cols=108 Identities=15% Similarity=0.175 Sum_probs=68.1
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCCCCcCCCC--
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPML-MVGNKADLDHQRQVS-- 106 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~~~~~~~-- 106 (159)
..+.+.||||+.+|.......+..+|++++|+|+++...-. ....+..+.. .++|.+ ++.||+|+.+....-
T Consensus 75 ~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~ 149 (396)
T PRK00049 75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ----VGVPYIVVFLNKCDMVDDEELLEL 149 (396)
T ss_pred eEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHH
Confidence 34566999999888666666678999999999998743221 2222333322 457876 589999986422211
Q ss_pred -HHHHHHHHHHcC-----CcEEEeCCCCCC----------CHHHHHHHHHHH
Q psy11289 107 -SMDAQNVARQLR-----IPYIECSAKVRI----------NVDQAFHELVRI 142 (159)
Q Consensus 107 -~~~~~~~~~~~~-----~~~~~~sa~~~~----------~i~~~~~~l~~~ 142 (159)
..+...+....+ ++++.+||++|. ++..+++.+...
T Consensus 150 ~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 150 VEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred HHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 122333444333 679999999875 455666666554
No 257
>PRK12740 elongation factor G; Reviewed
Probab=98.94 E-value=4.2e-08 Score=79.73 Aligned_cols=71 Identities=21% Similarity=0.344 Sum_probs=53.4
Q ss_pred EEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 23 CVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 23 ~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
+..++ +.+.+|||||+.++...+...++.+|++++|+|+++.........| ..+.. .++|+++++||+|+.
T Consensus 55 ~~~~~--~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~----~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 55 CEWKG--HKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK----YGVPRIIFVNKMDRA 125 (668)
T ss_pred EEECC--EEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH----cCCCEEEEEECCCCC
Confidence 34445 4566699999998877888889999999999999987655543333 23322 468999999999985
No 258
>PLN03127 Elongation factor Tu; Provisional
Probab=98.92 E-value=4.2e-08 Score=76.03 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=66.2
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCcCCCCH-
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFP-MLMVGNKADLDHQRQVSS- 107 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~~~- 107 (159)
.++.|.||||+.+|......-+..+|++++|+|+++...-+. ...+..+.. .++| +|++.||+|+.+......
T Consensus 124 ~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~----~gip~iIvviNKiDlv~~~~~~~~ 198 (447)
T PLN03127 124 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----VGVPSLVVFLNKVDVVDDEELLEL 198 (447)
T ss_pred eEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH----cCCCeEEEEEEeeccCCHHHHHHH
Confidence 345669999999886655555567999999999976432211 111222222 4578 578899999864222111
Q ss_pred --HHHHHHHHHcC-----CcEEEeCCC---CCCC-------HHHHHHHHHHHH
Q psy11289 108 --MDAQNVARQLR-----IPYIECSAK---VRIN-------VDQAFHELVRIV 143 (159)
Q Consensus 108 --~~~~~~~~~~~-----~~~~~~sa~---~~~~-------i~~~~~~l~~~~ 143 (159)
.+...+....+ ++++++||. +|.| +.++++.+...+
T Consensus 199 i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 199 VEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred HHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 12223333322 578888886 4555 667777776654
No 259
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.92 E-value=1.9e-08 Score=81.20 Aligned_cols=105 Identities=16% Similarity=0.084 Sum_probs=65.5
Q ss_pred EECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcC
Q psy11289 24 VIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQR 103 (159)
Q Consensus 24 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 103 (159)
..++.+ +.|+||||+++|.......+..+|++++|+|+++...-+... .+..+ ... ...|+++++||+|+.+..
T Consensus 100 ~~~~~~--~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e-~~~~~-~~~--~~~~iivvvNK~D~~~~~ 173 (632)
T PRK05506 100 ATPKRK--FIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR-HSFIA-SLL--GIRHVVLAVNKMDLVDYD 173 (632)
T ss_pred ccCCce--EEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH-HHHHH-HHh--CCCeEEEEEEecccccch
Confidence 334444 456999999988665555678999999999997643211111 11112 211 225788999999986421
Q ss_pred CCCH----HHHHHHHHHcC---CcEEEeCCCCCCCHHH
Q psy11289 104 QVSS----MDAQNVARQLR---IPYIECSAKVRINVDQ 134 (159)
Q Consensus 104 ~~~~----~~~~~~~~~~~---~~~~~~sa~~~~~i~~ 134 (159)
.-.. .+...+.+.++ ++++++||++|.|+.+
T Consensus 174 ~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 174 QEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1111 12233344555 4599999999999874
No 260
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.92 E-value=2.8e-08 Score=72.29 Aligned_cols=95 Identities=23% Similarity=0.344 Sum_probs=62.0
Q ss_pred EEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCc
Q psy11289 23 CVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQ 102 (159)
Q Consensus 23 ~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~ 102 (159)
+..++. ++.+|||||+.++...+...++.+|++++|+|+.+...-.. ...+..+.. .++|+++++||+|+.+.
T Consensus 59 ~~~~~~--~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~----~~~p~ivviNK~D~~~a 131 (270)
T cd01886 59 CFWKDH--RINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR----YNVPRIAFVNKMDRTGA 131 (270)
T ss_pred EEECCE--EEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 344544 45669999999888888899999999999999987532221 222333322 56899999999998642
Q ss_pred CCCCHHH-HHHHHHHcCC---c-EEEeCCC
Q psy11289 103 RQVSSMD-AQNVARQLRI---P-YIECSAK 127 (159)
Q Consensus 103 ~~~~~~~-~~~~~~~~~~---~-~~~~sa~ 127 (159)
. .+. ..++...++. + .+++|+.
T Consensus 132 ~---~~~~~~~l~~~l~~~~~~~~~Pisa~ 158 (270)
T cd01886 132 D---FFRVVEQIREKLGANPVPLQLPIGEE 158 (270)
T ss_pred C---HHHHHHHHHHHhCCCceEEEeccccC
Confidence 2 222 2333334442 2 5666665
No 261
>PLN03126 Elongation factor Tu; Provisional
Probab=98.88 E-value=6.2e-08 Score=75.60 Aligned_cols=96 Identities=18% Similarity=0.202 Sum_probs=63.3
Q ss_pred EEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCcCCCC---
Q psy11289 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFP-MLMVGNKADLDHQRQVS--- 106 (159)
Q Consensus 31 ~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~~--- 106 (159)
++.|+|+||+++|......-+..+|++++|+|+.+...-.. .+++..+.. .++| ++++.||+|+.+.....
T Consensus 145 ~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i 219 (478)
T PLN03126 145 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELV 219 (478)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHH
Confidence 45679999999987766666788999999999987532222 233333322 4567 77899999986422211
Q ss_pred HHHHHHHHHHc-----CCcEEEeCCCCCCC
Q psy11289 107 SMDAQNVARQL-----RIPYIECSAKVRIN 131 (159)
Q Consensus 107 ~~~~~~~~~~~-----~~~~~~~sa~~~~~ 131 (159)
.++...+.+.. .++++++||.+|.+
T Consensus 220 ~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 220 ELEVRELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence 12334444444 36799999998853
No 262
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.88 E-value=5.5e-08 Score=71.16 Aligned_cols=132 Identities=17% Similarity=0.181 Sum_probs=85.0
Q ss_pred cccccccccceEEEEEEECCeeEEEEEEeCCCcc-cchH-HH-------HHHhhcCCEEEEEEECCCh--hhHHHHHHHH
Q psy11289 8 VTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQE-EFSA-MR-------EQYMRSGEGFLLVFSVTDR--NSFEEIYKFH 76 (159)
Q Consensus 8 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~-~~~~-~~-------~~~~~~~~~ii~v~d~~~~--~s~~~~~~~~ 76 (159)
...|+-|+-..+...+..++. ++|+.||||.- +--+ ++ -..-.=+++|+|+||++.. -+.+....++
T Consensus 195 vA~YPFTTK~i~vGhfe~~~~--R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~ 272 (346)
T COG1084 195 VAPYPFTTKGIHVGHFERGYL--RIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLL 272 (346)
T ss_pred cCCCCccccceeEeeeecCCc--eEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHH
Confidence 345555655444444444444 46679999973 3211 11 1112235899999999864 4567777888
Q ss_pred HHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcC-CcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 77 RQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLR-IPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 77 ~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
.++.... +.|+++|.||+|..+.+.+.. .......-| ...+.+++..+.+++.+-+.+.....+.
T Consensus 273 ~eIk~~f---~~p~v~V~nK~D~~~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 273 EEIKELF---KAPIVVVINKIDIADEEKLEE--IEASVLEEGGEEPLKISATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred HHHHHhc---CCCeEEEEecccccchhHHHH--HHHHHHhhccccccceeeeehhhHHHHHHHHHHHhhch
Confidence 8887764 379999999999876554433 222233334 4488999999999998888777764433
No 263
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.88 E-value=2.3e-08 Score=78.93 Aligned_cols=76 Identities=21% Similarity=0.258 Sum_probs=54.3
Q ss_pred EEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 21 KQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 21 ~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
....++...+++++|||||+.+|.......++.+|++|+|+|+++.-. .....++... . ..++|+++++||+|+.
T Consensus 71 ~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~-~---~~~~PiivviNKiD~~ 145 (527)
T TIGR00503 71 SVMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVT-R---LRDTPIFTFMNKLDRD 145 (527)
T ss_pred EEEEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHH-H---hcCCCEEEEEECcccc
Confidence 334455556777889999999887767778899999999999987421 1223333322 2 2568999999999985
Q ss_pred C
Q psy11289 101 H 101 (159)
Q Consensus 101 ~ 101 (159)
.
T Consensus 146 ~ 146 (527)
T TIGR00503 146 I 146 (527)
T ss_pred C
Confidence 3
No 264
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.87 E-value=2.4e-08 Score=73.36 Aligned_cols=137 Identities=17% Similarity=0.163 Sum_probs=87.2
Q ss_pred ccccccccceEEEEEEE-CCeeEEEEEEeCCCcccchH----HHHHH---hhcCCEEEEEEECCChh---hHHHHHHHHH
Q psy11289 9 TDYDPTIEDSYTKQCVI-DDIPARLDILDTAGQEEFSA----MREQY---MRSGEGFLLVFSVTDRN---SFEEIYKFHR 77 (159)
Q Consensus 9 ~~~~pt~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~----~~~~~---~~~~~~ii~v~d~~~~~---s~~~~~~~~~ 77 (159)
.+|+-|+-....-.+.+ .+..+.+ =|+||...-.+ +.-.| ++.+.++++|.|++..+ ..++......
T Consensus 187 adYpFTTL~PnLGvV~~~~~~sfv~--ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~ 264 (369)
T COG0536 187 ADYPFTTLVPNLGVVRVDGGESFVV--ADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRN 264 (369)
T ss_pred cCCccccccCcccEEEecCCCcEEE--ecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHH
Confidence 45666665433333333 3444544 99999854322 22233 45789999999998654 3555555566
Q ss_pred HHHhhc-CCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCc-EEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 78 QILRVK-DRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIP-YIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 78 ~i~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
++..+. ...++|.++|+||+|+....+-.......+.+..+.. .+.+||.++.|++++...+.+.+.+..
T Consensus 265 EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 265 ELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred HHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 666663 3457899999999996543322222333444444544 222999999999999999998876654
No 265
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.87 E-value=8e-08 Score=71.33 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=38.7
Q ss_pred CCcEEEEEeCCCCCCcCCCCHHHHHHHHHHc-CCcEEEeCCCCCCCHHHHHH-HHHHHHHh
Q psy11289 87 EFPMLMVGNKADLDHQRQVSSMDAQNVARQL-RIPYIECSAKVRINVDQAFH-ELVRIVLL 145 (159)
Q Consensus 87 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~-~l~~~~~~ 145 (159)
.+|+|+++||.|+..... ....+.... ..+++.+||+.+.++.++.+ .+.+.+.+
T Consensus 214 ~KPvI~VlNK~Dl~~~~~----~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 214 SKPMVIAANKADIPDAEN----NISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred CCcEEEEEEHHHccChHH----HHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 479999999999753221 111222233 45699999999999999998 57776643
No 266
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.85 E-value=3.9e-08 Score=76.26 Aligned_cols=103 Identities=16% Similarity=0.146 Sum_probs=65.4
Q ss_pred eeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChh---hH---HHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCC
Q psy11289 28 IPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRN---SF---EEIYKFHRQILRVKDRDEFP-MLMVGNKADLD 100 (159)
Q Consensus 28 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~ 100 (159)
....+.|.|+||+.+|.......+..+|++++|+|+++.. .+ ....+-+. +... .++| +|++.||+|..
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~---~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFT---LGVKQMIVCINKMDDK 158 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHH---cCCCeEEEEEEccccc
Confidence 3445666999999999777777788999999999998742 11 11111111 2222 4555 67899999953
Q ss_pred C----cCCC--CHHHHHHHHHHcC-----CcEEEeCCCCCCCHHH
Q psy11289 101 H----QRQV--SSMDAQNVARQLR-----IPYIECSAKVRINVDQ 134 (159)
Q Consensus 101 ~----~~~~--~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~ 134 (159)
. +... ..++...+....| ++++++||.+|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 2 1111 0223334444444 5699999999999864
No 267
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.85 E-value=8.4e-08 Score=78.22 Aligned_cols=100 Identities=19% Similarity=0.204 Sum_probs=66.0
Q ss_pred EEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 21 KQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 21 ~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
..+..++.+ +.+|||||+.++...+...++.+|++++|+|+++....... .++..+.. .++|+++++||+|+.
T Consensus 68 ~~~~~~~~~--i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~ivviNK~D~~ 140 (689)
T TIGR00484 68 TTVFWKGHR--INIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR----YEVPRIAFVNKMDKT 140 (689)
T ss_pred EEEEECCeE--EEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH----cCCCEEEEEECCCCC
Confidence 344455554 56699999999887888889999999999999886544432 22333322 468999999999987
Q ss_pred CcCCCCHHHHHHHHHHcCCc----EEEeCCCCC
Q psy11289 101 HQRQVSSMDAQNVARQLRIP----YIECSAKVR 129 (159)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~----~~~~sa~~~ 129 (159)
... -.....++...++.. .+++|+..+
T Consensus 141 ~~~--~~~~~~~i~~~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 141 GAN--FLRVVNQIKQRLGANAVPIQLPIGAEDN 171 (689)
T ss_pred CCC--HHHHHHHHHHHhCCCceeEEeccccCCC
Confidence 532 122233444444432 456666554
No 268
>PRK12739 elongation factor G; Reviewed
Probab=98.84 E-value=1.2e-07 Score=77.25 Aligned_cols=73 Identities=23% Similarity=0.301 Sum_probs=53.0
Q ss_pred EEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 21 KQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 21 ~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
..+..++.++ .++||||+.+|...+...++.+|++++|+|+.+.-.-... ..+..+.. .++|.++++||+|+.
T Consensus 66 ~~~~~~~~~i--~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~----~~~p~iv~iNK~D~~ 138 (691)
T PRK12739 66 TTCFWKGHRI--NIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK----YGVPRIVFVNKMDRI 138 (691)
T ss_pred EEEEECCEEE--EEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCCCC
Confidence 3445566654 5599999998887888889999999999999876433222 22223322 568999999999985
No 269
>KOG0090|consensus
Probab=98.83 E-value=7.5e-08 Score=66.42 Aligned_cols=119 Identities=17% Similarity=0.298 Sum_probs=76.4
Q ss_pred EEEEECCeeEEEEEEeCCCcccchHHHHHHhh---cCCEEEEEEECCC-hhhHHHHHHHHHHHHhhcC--CCCCcEEEEE
Q psy11289 21 KQCVIDDIPARLDILDTAGQEEFSAMREQYMR---SGEGFLLVFSVTD-RNSFEEIYKFHRQILRVKD--RDEFPMLMVG 94 (159)
Q Consensus 21 ~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~---~~~~ii~v~d~~~-~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~ 94 (159)
.....+... +.+.|.||+.+.+.....++. .+-+++||+|..- +....+...++-.+.-... ...+|+++++
T Consensus 75 a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaC 152 (238)
T KOG0090|consen 75 ATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIAC 152 (238)
T ss_pred eeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEe
Confidence 334445455 455999999998876666666 7999999999863 3445556655555555442 2467899999
Q ss_pred eCCCCCCcCCCC------HHHH----------------------------HH--HHH--HcCCcEEEeCCCCCCCHHHHH
Q psy11289 95 NKADLDHQRQVS------SMDA----------------------------QN--VAR--QLRIPYIECSAKVRINVDQAF 136 (159)
Q Consensus 95 nK~D~~~~~~~~------~~~~----------------------------~~--~~~--~~~~~~~~~sa~~~~~i~~~~ 136 (159)
||.|+...+... +.|. .. |+. ...+.+.++|++++ +++++-
T Consensus 153 NKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~ 231 (238)
T KOG0090|consen 153 NKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWE 231 (238)
T ss_pred cchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHH
Confidence 999984321100 0000 00 111 11245889999998 899999
Q ss_pred HHHHHH
Q psy11289 137 HELVRI 142 (159)
Q Consensus 137 ~~l~~~ 142 (159)
+|+-+.
T Consensus 232 ~wi~~~ 237 (238)
T KOG0090|consen 232 SWIREA 237 (238)
T ss_pred HHHHHh
Confidence 998764
No 270
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.82 E-value=3.7e-08 Score=72.72 Aligned_cols=105 Identities=20% Similarity=0.144 Sum_probs=72.4
Q ss_pred EECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcC
Q psy11289 24 VIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQR 103 (159)
Q Consensus 24 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 103 (159)
..+.+++.+ -||||++.|...+-.-...||..|+++|+.. ......+-...|....+. ..+++..||+|+.+=.
T Consensus 82 sT~KRkFIi--ADTPGHeQYTRNMaTGASTadlAIlLVDAR~--Gvl~QTrRHs~I~sLLGI--rhvvvAVNKmDLvdy~ 155 (431)
T COG2895 82 STEKRKFII--ADTPGHEQYTRNMATGASTADLAILLVDARK--GVLEQTRRHSFIASLLGI--RHVVVAVNKMDLVDYS 155 (431)
T ss_pred ccccceEEE--ecCCcHHHHhhhhhcccccccEEEEEEecch--hhHHHhHHHHHHHHHhCC--cEEEEEEeeecccccC
Confidence 335556544 9999999998766666678999999999954 233333334455555432 4789999999996533
Q ss_pred CCCHH----HHHHHHHHcCC---cEEEeCCCCCCCHHH
Q psy11289 104 QVSSM----DAQNVARQLRI---PYIECSAKVRINVDQ 134 (159)
Q Consensus 104 ~~~~~----~~~~~~~~~~~---~~~~~sa~~~~~i~~ 134 (159)
+-..+ +-..|++++++ .++++||+.|+|+-.
T Consensus 156 e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 156 EEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 22222 33567888885 499999999998753
No 271
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.81 E-value=3.9e-08 Score=67.03 Aligned_cols=72 Identities=19% Similarity=0.482 Sum_probs=49.8
Q ss_pred EEEEEeCCCcccchHHH-HH--HhhcCCEEEEEEECCC-hhhHHHHHHHHHHHHhhcC--CCCCcEEEEEeCCCCCCc
Q psy11289 31 RLDILDTAGQEEFSAMR-EQ--YMRSGEGFLLVFSVTD-RNSFEEIYKFHRQILRVKD--RDEFPMLMVGNKADLDHQ 102 (159)
Q Consensus 31 ~~~l~D~~g~~~~~~~~-~~--~~~~~~~ii~v~d~~~-~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~~~~ 102 (159)
.+.+.|+||+.+.+... .. +...+.+||||.|.+. +..+.++.+++..++.... ...+|+++++||.|+...
T Consensus 50 ~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 50 KLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp CECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 45669999999987633 33 4789999999999974 5566676666666555443 346899999999998653
No 272
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.79 E-value=3.2e-07 Score=66.72 Aligned_cols=99 Identities=13% Similarity=0.180 Sum_probs=64.9
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHH
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMD 109 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 109 (159)
..+.+|||||+.+|...+...++.+|++++|+|+++........-| ..+.. .++|.++++||+|..... ..+.
T Consensus 64 ~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~----~~~p~iivvNK~D~~~~~--~~~~ 136 (268)
T cd04170 64 HKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE----AGIPRIIFINKMDRERAD--FDKT 136 (268)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEECCccCCCC--HHHH
Confidence 4566799999998877888899999999999999986554333222 22222 468999999999986431 1223
Q ss_pred HHHHHHHcCCcEEE--eCCCCCCCHHHH
Q psy11289 110 AQNVARQLRIPYIE--CSAKVRINVDQA 135 (159)
Q Consensus 110 ~~~~~~~~~~~~~~--~sa~~~~~i~~~ 135 (159)
...+...++.+++. +...+|.++..+
T Consensus 137 ~~~l~~~~~~~~~~~~ip~~~~~~~~~~ 164 (268)
T cd04170 137 LAALQEAFGRPVVPLQLPIGEGDDFKGV 164 (268)
T ss_pred HHHHHHHhCCCeEEEEecccCCCceeEE
Confidence 34444556655443 344555444333
No 273
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.79 E-value=1.3e-08 Score=77.81 Aligned_cols=138 Identities=19% Similarity=0.192 Sum_probs=91.9
Q ss_pred cccccccccccccceE----------EEEEEE-CCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCCh------
Q psy11289 4 ESYFVTDYDPTIEDSY----------TKQCVI-DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR------ 66 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~----------~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~------ 66 (159)
++-+.++|.||..|.. ...+.+ ++.. +.++|+||+...+..|..++.++++||||+++++-
T Consensus 201 ~RI~~~~Y~PT~~DIl~~r~~T~Gi~e~~f~~~~~~~--~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~e 278 (389)
T PF00503_consen 201 DRIAQPDYIPTDEDILRCRVKTTGITEIDFNFSGSRK--FRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYE 278 (389)
T ss_dssp HHHHSTTB---HHHHHHS----SSEEEEEEEE-TTEE--EEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESS
T ss_pred hhhcCCCccCCCCCeeeecCCCCCeeEEEEEeecccc--cceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcc
Confidence 4456778888877543 122333 3334 46699999988888999999999999999998652
Q ss_pred ----hhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC------c----------C--CCCHHHHHHHHHHc-------
Q psy11289 67 ----NSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDH------Q----------R--QVSSMDAQNVARQL------- 117 (159)
Q Consensus 67 ----~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~------~----------~--~~~~~~~~~~~~~~------- 117 (159)
..+.+....+..+.......++|++|+.||.|+-. . . .-..+.+..+....
T Consensus 279 d~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~ 358 (389)
T PF00503_consen 279 DPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRN 358 (389)
T ss_dssp STTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHST
T ss_pred cchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccC
Confidence 23555566667776655556899999999999721 0 1 12345555544321
Q ss_pred -----CCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 118 -----RIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 118 -----~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
.+.++.++|.+..++..+|+.+.+.+
T Consensus 359 ~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 359 NSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp TTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred CCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 12367899999999999999887653
No 274
>KOG1707|consensus
Probab=98.78 E-value=8.8e-08 Score=74.64 Aligned_cols=139 Identities=20% Similarity=0.267 Sum_probs=99.1
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|..++.++....+ ...+...|..-.+.+-|++.. ....+.+.. ..+|+++++||.+++.||..+...++.-..
T Consensus 446 lgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~ 523 (625)
T KOG1707|consen 446 LGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSNPRSFEYLAEVYNKYFD 523 (625)
T ss_pred hccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEEecccCCchHHHHHHHHHHHhhh
Confidence 45666667778887776 445555677777888998865 222222222 678999999999999999988765443322
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCc-EEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIP-YIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
....|+++|+.|+|+.+..+....+..+++.+++++ .+..|.++... .++|..|..+..-..
T Consensus 524 ---~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 524 ---LYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIKLATMAQYPH 586 (625)
T ss_pred ---ccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHHHHHhhhCCC
Confidence 267899999999999654432222337999999987 67778875334 899999988877555
No 275
>KOG1191|consensus
Probab=98.73 E-value=8.6e-08 Score=73.41 Aligned_cols=143 Identities=20% Similarity=0.225 Sum_probs=95.5
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCccc-chHH--------HHHHhhcCCEEEEEEEC--CChhhHHHH
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEE-FSAM--------REQYMRSGEGFLLVFSV--TDRNSFEEI 72 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~--------~~~~~~~~~~ii~v~d~--~~~~s~~~~ 72 (159)
+...+...++|+.|.....++++|.++.+ .||+|... -... ...-++.+|++++|+|+ ++-++-..+
T Consensus 292 drsIVSpv~GTTRDaiea~v~~~G~~v~L--~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i 369 (531)
T KOG1191|consen 292 DRSIVSPVPGTTRDAIEAQVTVNGVPVRL--SDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKI 369 (531)
T ss_pred CceEeCCCCCcchhhheeEeecCCeEEEE--EeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHH
Confidence 45677888999999999999999999877 99999855 1111 12336789999999999 444443343
Q ss_pred HHHHHHHHhhc-----CCCCCcEEEEEeCCCCCCc-CCCCHHHHHHHHHHcC---Cc-EEEeCCCCCCCHHHHHHHHHHH
Q psy11289 73 YKFHRQILRVK-----DRDEFPMLMVGNKADLDHQ-RQVSSMDAQNVARQLR---IP-YIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 73 ~~~~~~i~~~~-----~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~---~~-~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
.+.+.....-. .....|++++.||.|+... .+.+. ....+....+ .+ +.++|++++.|+..+.+.+.+.
T Consensus 370 ~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~-~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~ 448 (531)
T KOG1191|consen 370 ARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTK-IPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNI 448 (531)
T ss_pred HHHHHHhccceEEEeccccccceEEEechhhccCccccccC-CceeccccccCcccceEEEeeechhhhHHHHHHHHHHH
Confidence 33333322211 1123689999999998654 22222 1122222222 34 5669999999999999999998
Q ss_pred HHhcccc
Q psy11289 143 VLLHTKQ 149 (159)
Q Consensus 143 ~~~~~~~ 149 (159)
+......
T Consensus 449 ~~~~~~~ 455 (531)
T KOG1191|consen 449 VERLVVS 455 (531)
T ss_pred HHHhhcC
Confidence 8776653
No 276
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.72 E-value=6.4e-08 Score=64.82 Aligned_cols=88 Identities=11% Similarity=0.121 Sum_probs=56.2
Q ss_pred HhhcCCEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCC
Q psy11289 50 YMRSGEGFLLVFSVTDRNS--FEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAK 127 (159)
Q Consensus 50 ~~~~~~~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 127 (159)
.++++|.+++|.|++++.. ...+.+++. .. ..++|+++|.||+|+.++..+ ......+.+.+....+.+||+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~~--~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~ 78 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---KE--KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASIN 78 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHH---hc--cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecc
Confidence 4578999999999998743 233333322 21 245899999999998542211 111122222222225789999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy11289 128 VRINVDQAFHELVRIV 143 (159)
Q Consensus 128 ~~~~i~~~~~~l~~~~ 143 (159)
.+.|++++++.+....
T Consensus 79 ~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 79 NPFGKGSLIQLLRQFS 94 (157)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999999987654
No 277
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.72 E-value=7.3e-08 Score=64.43 Aligned_cols=85 Identities=13% Similarity=0.036 Sum_probs=55.6
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHH
Q psy11289 55 EGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQ 134 (159)
Q Consensus 55 ~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 134 (159)
|.+++|+|+.++.+... .++.. ......++|+++|.||+|+.....+ .+-...+....+.+++.+||++|.|+++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~--~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~ 75 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER--VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEK 75 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH--HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhh
Confidence 68999999998765542 22321 1111256899999999998542211 0111123333356689999999999999
Q ss_pred HHHHHHHHHH
Q psy11289 135 AFHELVRIVL 144 (159)
Q Consensus 135 ~~~~l~~~~~ 144 (159)
+.+.+.+...
T Consensus 76 L~~~i~~~~~ 85 (155)
T cd01849 76 KESAFTKQTN 85 (155)
T ss_pred HHHHHHHHhH
Confidence 9999877643
No 278
>KOG1423|consensus
Probab=98.70 E-value=4e-07 Score=66.21 Aligned_cols=126 Identities=13% Similarity=0.105 Sum_probs=74.8
Q ss_pred ccccceEEEEEEECCeeEEEEEEeCCCcccc------hHH------HHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 13 PTIEDSYTKQCVIDDIPARLDILDTAGQEEF------SAM------REQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 13 pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~------~~~------~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
-|+.......++-+..+ +.|+||||.-.- ..+ -...+.+||.+++++|++++...-+ .+.+..+.
T Consensus 105 ~TTr~~ilgi~ts~eTQ--lvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~ 181 (379)
T KOG1423|consen 105 HTTRHRILGIITSGETQ--LVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLE 181 (379)
T ss_pred cceeeeeeEEEecCceE--EEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHH
Confidence 33333344444444444 566999996321 111 1223578999999999997433222 12233344
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcC-------------CCCHHHHHHHHHHc-------------CC----cEEEeCCCCCC
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQR-------------QVSSMDAQNVARQL-------------RI----PYIECSAKVRI 130 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~-------------~~~~~~~~~~~~~~-------------~~----~~~~~sa~~~~ 130 (159)
.+ ..+|.++|-||.|....+ .++.- ..+..++. |. .+|.+||++|.
T Consensus 182 ~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~-kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~ 257 (379)
T KOG1423|consen 182 EY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKL-KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGE 257 (379)
T ss_pred HH---hcCCceeeccchhcchhhhHHhhhHHhccccccchh-hhhHHHHhccCCcccccccccCcccceeEEEEeccccc
Confidence 44 567999999999975332 11110 01111111 12 27999999999
Q ss_pred CHHHHHHHHHHHHHh
Q psy11289 131 NVDQAFHELVRIVLL 145 (159)
Q Consensus 131 ~i~~~~~~l~~~~~~ 145 (159)
||+++-++++.++..
T Consensus 258 GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 258 GIKDLKQYLMSQAPP 272 (379)
T ss_pred CHHHHHHHHHhcCCC
Confidence 999999999987643
No 279
>KOG0705|consensus
Probab=98.70 E-value=1.9e-07 Score=72.53 Aligned_cols=139 Identities=22% Similarity=0.460 Sum_probs=105.5
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+.+.|..+..|. +..|.+.+.+++....+.+.|.+|.. -..|...+|++||||.+.+..+|+.+..+...+..+
T Consensus 51 ltgty~~~e~~e-~~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~ 124 (749)
T KOG0705|consen 51 LTGTYTQDESPE-GGRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSY 124 (749)
T ss_pred ccceeccccCCc-CccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEEEEeccccCHHHHHHHHhhcccc
Confidence 444444443333 56778888889988888899999842 246778899999999999999999998888787776
Q ss_pred cCCCCCcEEEEEeCCCCC--CcCCCCHHHHHHHHHHc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 83 KDRDEFPMLMVGNKADLD--HQRQVSSMDAQNVARQL-RIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.....+|.++++++.-.. ..+.+..+.++.++.++ .+.+++.++..|.++..+|+.+...+....
T Consensus 125 r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k~i~~~ 192 (749)
T KOG0705|consen 125 RNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQKIVQLR 192 (749)
T ss_pred cccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHHHHHHH
Confidence 665678889888775432 23444555666665554 588999999999999999999998777553
No 280
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.68 E-value=1.5e-07 Score=68.74 Aligned_cols=92 Identities=15% Similarity=0.091 Sum_probs=62.1
Q ss_pred HHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeC
Q psy11289 46 MREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125 (159)
Q Consensus 46 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 125 (159)
.....++.+|.+++|.|+.++.+.... ++. +.. .+.|+++|.||+|+.+.... ....++.+..+.+++.+|
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~---~~l--~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~iS 84 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRNP--MID---EIR--GNKPRLIVLNKADLADPAVT--KQWLKYFEEKGIKALAIN 84 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCCh--hHH---HHH--CCCCEEEEEEccccCCHHHH--HHHHHHHHHcCCeEEEEE
Confidence 455667899999999999877553321 111 111 35799999999998542111 111122233567789999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc
Q psy11289 126 AKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 126 a~~~~~i~~~~~~l~~~~~~~ 146 (159)
|+++.|+.++.+.+.+.+...
T Consensus 85 a~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 85 AKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred CCCcccHHHHHHHHHHHHHHh
Confidence 999999999999888776543
No 281
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.67 E-value=1e-07 Score=64.72 Aligned_cols=93 Identities=13% Similarity=0.051 Sum_probs=62.2
Q ss_pred cchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcE
Q psy11289 42 EFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPY 121 (159)
Q Consensus 42 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 121 (159)
+........++++|.+++|+|++++...... . +.... .+.|+++|.||+|+.+... .....++.+..+..+
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~----i~~~~--~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~v 78 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNP-L----LEKIL--GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKV 78 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCCh-h----hHhHh--cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeE
Confidence 3344556678899999999999876543221 1 22222 3579999999999854211 111112223334568
Q ss_pred EEeCCCCCCCHHHHHHHHHHHH
Q psy11289 122 IECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 122 ~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
+.+||+++.|++++.+.+...+
T Consensus 79 i~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 79 LFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred EEEECCCcccHHHHHHHHHHHH
Confidence 9999999999999999988865
No 282
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.67 E-value=1.5e-07 Score=61.99 Aligned_cols=76 Identities=14% Similarity=0.134 Sum_probs=52.4
Q ss_pred HHHhhcCCEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeC
Q psy11289 48 EQYMRSGEGFLLVFSVTDRNSFE--EIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125 (159)
Q Consensus 48 ~~~~~~~~~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 125 (159)
...++++|++++|+|+.++.+.. .+.+|+... . .++|+++|+||+|+.++.. .....++.+..+.+++++|
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iS 78 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFS 78 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEE
Confidence 45568899999999999876544 344444322 1 4689999999999854322 2233445556678899999
Q ss_pred CCCCC
Q psy11289 126 AKVRI 130 (159)
Q Consensus 126 a~~~~ 130 (159)
|+++.
T Consensus 79 a~~~~ 83 (141)
T cd01857 79 ALKEN 83 (141)
T ss_pred ecCCC
Confidence 98765
No 283
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=3.9e-07 Score=68.64 Aligned_cols=108 Identities=17% Similarity=0.181 Sum_probs=68.5
Q ss_pred CCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhh---H--HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 26 DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNS---F--EEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 26 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~--~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
.-.+..+.|.|+||+..|-+.+-.-+..||+.|+|+|+.+.+. | ....+-...+....+ -..+|++.||+|..
T Consensus 81 et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG--i~~lIVavNKMD~v 158 (428)
T COG5256 81 ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG--IKQLIVAVNKMDLV 158 (428)
T ss_pred ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC--CceEEEEEEccccc
Confidence 3344456779999988887766666778999999999988642 1 111222223333332 23688899999986
Q ss_pred CcCCCCHHHH----HHHHHHcC-----CcEEEeCCCCCCCHHHH
Q psy11289 101 HQRQVSSMDA----QNVARQLR-----IPYIECSAKVRINVDQA 135 (159)
Q Consensus 101 ~~~~~~~~~~----~~~~~~~~-----~~~~~~sa~~~~~i~~~ 135 (159)
+=++-..++. ..+.+..| ++|+++|+..|+|+.+.
T Consensus 159 ~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 159 SWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 4111112222 22444444 56999999999997654
No 284
>PRK13796 GTPase YqeH; Provisional
Probab=98.61 E-value=5.2e-07 Score=68.37 Aligned_cols=93 Identities=23% Similarity=0.278 Sum_probs=62.0
Q ss_pred cchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHH----HHHHHc
Q psy11289 42 EFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQ----NVARQL 117 (159)
Q Consensus 42 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~----~~~~~~ 117 (159)
.|...........+.+++|+|+.|.. ..|...+.+.. .+.|+++|+||+|+.. .....+... .+++.+
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~--~~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFV--GNNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHh--CCCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHhc
Confidence 34443433333334999999998743 23444555543 3679999999999964 233333333 345566
Q ss_pred CC---cEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 118 RI---PYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 118 ~~---~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
|+ .++.+||++|.|++++++.+.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 76 58999999999999999998764
No 285
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.59 E-value=2.7e-07 Score=67.42 Aligned_cols=113 Identities=14% Similarity=0.121 Sum_probs=66.3
Q ss_pred cccccc-ceEEEEEEECCeeEEEEEEeCCCcccchH---HHH-----------------------HHhh--cCCEEEEEE
Q psy11289 11 YDPTIE-DSYTKQCVIDDIPARLDILDTAGQEEFSA---MRE-----------------------QYMR--SGEGFLLVF 61 (159)
Q Consensus 11 ~~pt~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~-----------------------~~~~--~~~~ii~v~ 61 (159)
..+|+. ..+...+..+|.++++.+|||||...... .|. ..+. .+|++++++
T Consensus 43 ~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i 122 (276)
T cd01850 43 IDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFI 122 (276)
T ss_pred cCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEE
Confidence 455655 33456667788889999999999533210 010 1122 367888888
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCC--CCHHHHHHHHHHcCCcEEEeCCCC
Q psy11289 62 SVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQ--VSSMDAQNVARQLRIPYIECSAKV 128 (159)
Q Consensus 62 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~sa~~ 128 (159)
+.+.. .+.... +..+.... ..+|+++|+||+|+....+ ...+...+.+..++++++......
T Consensus 123 ~~~~~-~l~~~D--~~~lk~l~--~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 123 EPTGH-GLKPLD--IEFMKRLS--KRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred eCCCC-CCCHHH--HHHHHHHh--ccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 77641 111110 12222222 2589999999999854222 223445666777889988776643
No 286
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.59 E-value=2.4e-07 Score=75.87 Aligned_cols=83 Identities=19% Similarity=0.228 Sum_probs=58.0
Q ss_pred ccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEE
Q psy11289 13 PTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPML 91 (159)
Q Consensus 13 pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i 91 (159)
.|+...+ +.....++..+++.+|||||+.+|.......++.+|++++|+|+.+.-..+...-| ..... .+.|.+
T Consensus 68 ~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~----~~~p~i 142 (720)
T TIGR00490 68 ITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK----ENVKPV 142 (720)
T ss_pred chhhcccceeEEeecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH----cCCCEE
Confidence 3555333 33445666778888999999999988888889999999999999874322221111 22222 456889
Q ss_pred EEEeCCCCC
Q psy11289 92 MVGNKADLD 100 (159)
Q Consensus 92 vv~nK~D~~ 100 (159)
+++||+|..
T Consensus 143 vviNKiD~~ 151 (720)
T TIGR00490 143 LFINKVDRL 151 (720)
T ss_pred EEEEChhcc
Confidence 999999974
No 287
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.58 E-value=1e-06 Score=64.54 Aligned_cols=129 Identities=24% Similarity=0.237 Sum_probs=85.3
Q ss_pred cccccccccceEEEEEEECCeeEEEEEEeCCCcccchH-------HHHHHhhcCCEEEEEEECCChhh-HHHHHHHHHHH
Q psy11289 8 VTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSA-------MREQYMRSGEGFLLVFSVTDRNS-FEEIYKFHRQI 79 (159)
Q Consensus 8 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~~~ii~v~d~~~~~s-~~~~~~~~~~i 79 (159)
..+|+-|+-......+..+|-+ +|+.|+||.-.-.+ ..-+..++||.+++|.|+..+.+ .+.+.+.+...
T Consensus 90 va~y~FTTl~~VPG~l~Y~ga~--IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~ 167 (365)
T COG1163 90 VADYPFTTLEPVPGMLEYKGAQ--IQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDV 167 (365)
T ss_pred ccccCceecccccceEeecCce--EEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhc
Confidence 4567777766666666667766 56699998743222 23344789999999999986543 32222221111
Q ss_pred ----------------------------------------Hh-h-----------------------cCCCCCcEEEEEe
Q psy11289 80 ----------------------------------------LR-V-----------------------KDRDEFPMLMVGN 95 (159)
Q Consensus 80 ----------------------------------------~~-~-----------------------~~~~~~p~ivv~n 95 (159)
++ + ....-+|.++|.|
T Consensus 168 GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~N 247 (365)
T COG1163 168 GIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVN 247 (365)
T ss_pred CeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEe
Confidence 00 0 0012479999999
Q ss_pred CCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 96 KADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 96 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
|.|+.. .++...+.+.. +.+.+||..+.|++++.+.+.+.+.-
T Consensus 248 KiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~l 290 (365)
T COG1163 248 KIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLGL 290 (365)
T ss_pred cccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCe
Confidence 999865 34444555444 79999999999999999999988753
No 288
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.54 E-value=3.6e-07 Score=67.09 Aligned_cols=92 Identities=14% Similarity=0.107 Sum_probs=62.1
Q ss_pred HHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeC
Q psy11289 46 MREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125 (159)
Q Consensus 46 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 125 (159)
.....++.+|++|+|+|+.++.+.+. .++.. .. .+.|.++|.||+|+.+... .+....+.+..+.+++.+|
T Consensus 17 ~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~---~~--~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~vS 87 (287)
T PRK09563 17 EIKENLKLVDVVIEVLDARIPLSSEN--PMIDK---II--GNKPRLLILNKSDLADPEV--TKKWIEYFEEQGIKALAIN 87 (287)
T ss_pred HHHHHhhhCCEEEEEEECCCCCCCCC--hhHHH---Hh--CCCCEEEEEEchhcCCHHH--HHHHHHHHHHcCCeEEEEE
Confidence 34556789999999999988754332 11111 11 2579999999999853211 1112222334467789999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc
Q psy11289 126 AKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 126 a~~~~~i~~~~~~l~~~~~~~ 146 (159)
|+++.|+.++.+.+...+...
T Consensus 88 a~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 88 AKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred CCCcccHHHHHHHHHHHHHHH
Confidence 999999999999888776543
No 289
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.53 E-value=9.4e-07 Score=61.39 Aligned_cols=109 Identities=16% Similarity=0.156 Sum_probs=65.2
Q ss_pred EEEEEeCCCcccchHHHHHH-----hhcCCEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCcCC
Q psy11289 31 RLDILDTAGQEEFSAMREQY-----MRSGEGFLLVFSVTDRNSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADLDHQRQ 104 (159)
Q Consensus 31 ~~~l~D~~g~~~~~~~~~~~-----~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~ 104 (159)
.+.+||++|..........| +.++|.++++.+ .+ +.... .|++.+.+ .+.|+++|+||+|+.....
T Consensus 53 ~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~-~~---~~~~d~~~~~~l~~----~~~~~ilV~nK~D~~~~~~ 124 (197)
T cd04104 53 NVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISS-TR---FSSNDVKLAKAIQC----MGKKFYFVRTKVDRDLSNE 124 (197)
T ss_pred CceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeC-CC---CCHHHHHHHHHHHH----hCCCEEEEEecccchhhhh
Confidence 46779999985432222233 567899888743 22 33332 44454544 2569999999999842111
Q ss_pred ----C---CHHH----HHHHHH----HcC--C-cEEEeCCC--CCCCHHHHHHHHHHHHHhcc
Q psy11289 105 ----V---SSMD----AQNVAR----QLR--I-PYIECSAK--VRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 105 ----~---~~~~----~~~~~~----~~~--~-~~~~~sa~--~~~~i~~~~~~l~~~~~~~~ 147 (159)
. ..++ .++.+. ..+ . +++.+|+. .+.|+..+.+.++..+.+.+
T Consensus 125 ~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 125 QRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred hccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 0 0111 111111 222 2 48999998 57899999999998886543
No 290
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.52 E-value=6.1e-07 Score=57.15 Aligned_cols=77 Identities=25% Similarity=0.338 Sum_probs=56.0
Q ss_pred HHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeC
Q psy11289 46 MREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125 (159)
Q Consensus 46 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 125 (159)
....+.+.+++++.||+.++.+++..+ |...+.... ..+.|.++++||.|+.+...+..++.. +++++|
T Consensus 39 ~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~-k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s 107 (124)
T smart00010 39 YDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGN-KSDLPILVGGNRDVLEEERQVATEEGL--------EFAETS 107 (124)
T ss_pred ccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcC-CCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHh
Confidence 345667889999999999999999776 777765543 256889999999998543344433332 356788
Q ss_pred CCCCCCHH
Q psy11289 126 AKVRINVD 133 (159)
Q Consensus 126 a~~~~~i~ 133 (159)
+++|.|+.
T Consensus 108 ~~~~~~~~ 115 (124)
T smart00010 108 AKTPEEGE 115 (124)
T ss_pred CCCcchhh
Confidence 89998874
No 291
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.52 E-value=1.7e-06 Score=60.30 Aligned_cols=102 Identities=17% Similarity=0.163 Sum_probs=63.4
Q ss_pred EEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHH
Q psy11289 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDA 110 (159)
Q Consensus 31 ~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 110 (159)
...+.++.|..-.....+. -++.++.|+|+.+.++... .+..++ ...-++++||+|+.+......+..
T Consensus 93 D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~~qi-------~~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 93 EMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGGPGI-------TRSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhHhHh-------hhccEEEEEhhhccccccccHHHH
Confidence 3445788773211112222 2588999999988666322 111111 123388999999874322223333
Q ss_pred HHHHHH--cCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 111 QNVARQ--LRIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 111 ~~~~~~--~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
.+..+. .+.+++++||++|.|++++|+++.+.+.
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 444444 3578999999999999999999987653
No 292
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.51 E-value=4.3e-06 Score=57.51 Aligned_cols=108 Identities=18% Similarity=0.257 Sum_probs=71.4
Q ss_pred EEEEeCCCc----------ccchHHHHHHhh---cCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy11289 32 LDILDTAGQ----------EEFSAMREQYMR---SGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKAD 98 (159)
Q Consensus 32 ~~l~D~~g~----------~~~~~~~~~~~~---~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 98 (159)
+.+.|.||- +++..+...|++ +-.+++++.|+..+-.-.+. ..++.+.+ .++|+++++||+|
T Consensus 72 ~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~----~~i~~~vv~tK~D 146 (200)
T COG0218 72 LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE----LGIPVIVVLTKAD 146 (200)
T ss_pred EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH----cCCCeEEEEEccc
Confidence 556999983 455667777775 35788888999886544332 12222222 6789999999999
Q ss_pred CCCcCCCCHHHHHHHHHHcC----Cc--EEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 99 LDHQRQVSSMDAQNVARQLR----IP--YIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~----~~--~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
.....+.. ......++.++ .. ++..|+.++.|++++...|.+.+..
T Consensus 147 Ki~~~~~~-k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 147 KLKKSERN-KQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred cCChhHHH-HHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 76543332 12233343332 22 7888999999999999998887643
No 293
>KOG1144|consensus
Probab=98.51 E-value=4e-07 Score=72.94 Aligned_cols=108 Identities=20% Similarity=0.215 Sum_probs=75.2
Q ss_pred EEEEeCCCcccchHHHHHHhhcCCEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCC--
Q psy11289 32 LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD---RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVS-- 106 (159)
Q Consensus 32 ~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~-- 106 (159)
+.++||||++.|..+.......||.+|+|+|+-+ |.+.+.+. .+ ...++|+||..||+|..-....+
T Consensus 542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~----lL----R~rktpFivALNKiDRLYgwk~~p~ 613 (1064)
T KOG1144|consen 542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN----LL----RMRKTPFIVALNKIDRLYGWKSCPN 613 (1064)
T ss_pred eEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHH----HH----HhcCCCeEEeehhhhhhcccccCCC
Confidence 5669999999999999999999999999999976 44444431 12 12678999999999973211100
Q ss_pred --H--------------------HHHHHHHHH-cC-------------CcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 107 --S--------------------MDAQNVARQ-LR-------------IPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 107 --~--------------------~~~~~~~~~-~~-------------~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
. ....+|+++ ++ +.++++||.+|+||.+++-+|++.....+
T Consensus 614 ~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m 690 (1064)
T KOG1144|consen 614 APIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM 690 (1064)
T ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence 0 011122221 11 24789999999999999999988765443
No 294
>KOG1490|consensus
Probab=98.50 E-value=1.2e-06 Score=67.53 Aligned_cols=118 Identities=13% Similarity=0.114 Sum_probs=85.0
Q ss_pred EEEEEEeCCCcccchH---------HHHHHhhcCCEEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy11289 30 ARLDILDTAGQEEFSA---------MREQYMRSGEGFLLVFSVTDR--NSFEEIYKFHRQILRVKDRDEFPMLMVGNKAD 98 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~---------~~~~~~~~~~~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 98 (159)
...|+.||||.-+..- ......+=-.+++++.|++.. -|......+++.|.... .+.|+|+|+||+|
T Consensus 215 lrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF--aNK~~IlvlNK~D 292 (620)
T KOG1490|consen 215 LRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF--ANKVTILVLNKID 292 (620)
T ss_pred eeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh--cCCceEEEeeccc
Confidence 4567799999754311 112222334789999999875 45566567777777765 6899999999999
Q ss_pred CCCcCCCCHHHHHH---HHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcccc
Q psy11289 99 LDHQRQVSSMDAQN---VARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQ 149 (159)
Q Consensus 99 ~~~~~~~~~~~~~~---~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 149 (159)
+-....++.+...- +...-+++++++|+.+..|+.++-..++..++..+..
T Consensus 293 ~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE 346 (620)
T KOG1490|consen 293 AMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALLAARVE 346 (620)
T ss_pred ccCccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHHHHHHHH
Confidence 98777777655332 2233348999999999999999999999888766543
No 295
>PRK01889 GTPase RsgA; Reviewed
Probab=98.48 E-value=8.7e-07 Score=66.95 Aligned_cols=83 Identities=17% Similarity=0.125 Sum_probs=58.4
Q ss_pred hhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHH-HcCCcEEEeCCCCC
Q psy11289 51 MRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVAR-QLRIPYIECSAKVR 129 (159)
Q Consensus 51 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~ 129 (159)
..++|.+++|++++.+-....+.+++..+.. .++|.++|.||+|+.+.. .+....+.. ..+++++.+|++++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g 182 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDG 182 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCC
Confidence 5789999999999754444455555544433 567889999999996431 111222222 34788999999999
Q ss_pred CCHHHHHHHHH
Q psy11289 130 INVDQAFHELV 140 (159)
Q Consensus 130 ~~i~~~~~~l~ 140 (159)
.|++++..++-
T Consensus 183 ~gl~~L~~~L~ 193 (356)
T PRK01889 183 EGLDVLAAWLS 193 (356)
T ss_pred ccHHHHHHHhh
Confidence 99999888774
No 296
>KOG0099|consensus
Probab=98.45 E-value=1.3e-06 Score=62.40 Aligned_cols=139 Identities=16% Similarity=0.176 Sum_probs=93.6
Q ss_pred cccccccccceE----------EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCCh----------h
Q psy11289 8 VTDYDPTIEDSY----------TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR----------N 67 (159)
Q Consensus 8 ~~~~~pt~~~~~----------~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~ 67 (159)
..+|.|+..+.. ...+.++. +.++.+|+||+..-+..|-..+.+..++|||...++- .
T Consensus 172 ~~~Y~Ps~qDiLrcRvlTsGIfet~FqVdk--v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qN 249 (379)
T KOG0099|consen 172 QADYVPSDQDILRCRVLTSGIFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQN 249 (379)
T ss_pred ccCCCCcHHHHHHhhhhccceeeEEEeccc--cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchh
Confidence 467888876443 22233333 4466799999998888999999999999999987652 2
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCc----------------------------CCCCHHHH--HHHHHH-
Q psy11289 68 SFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQ----------------------------RQVSSMDA--QNVARQ- 116 (159)
Q Consensus 68 s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~----------------------------~~~~~~~~--~~~~~~- 116 (159)
.+++...++..+.+......+.+|+..||.|+..+ ...++.-. +-+.+.
T Consensus 250 RL~EaL~LFksiWnNRwL~tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~ 329 (379)
T KOG0099|consen 250 RLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDE 329 (379)
T ss_pred HHHHHHHHHHHHHhhhHHhhhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhh
Confidence 45555667777777666677899999999998210 11111111 111111
Q ss_pred ------------cCCcEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 117 ------------LRIPYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 117 ------------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
+-|-++.++|.+..+|..+|+..-..+.+...
T Consensus 330 FlRiSta~~Dg~h~CYpHFTcAvDTenIrrVFnDcrdiIqr~hl 373 (379)
T KOG0099|consen 330 FLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHL 373 (379)
T ss_pred HhhhccccCCCceecccceeEeechHHHHHHHHHHHHHHHHHHH
Confidence 01446788999999999999998887766543
No 297
>PRK00007 elongation factor G; Reviewed
Probab=98.44 E-value=4.1e-06 Score=68.53 Aligned_cols=101 Identities=20% Similarity=0.234 Sum_probs=64.3
Q ss_pred EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q psy11289 20 TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADL 99 (159)
Q Consensus 20 ~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 99 (159)
...+.+++.+ +.+.||||+.+|.......++.+|++++|+|+...-..+... .+..+.+ .++|.++++||+|+
T Consensus 67 ~~~~~~~~~~--~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~----~~~p~iv~vNK~D~ 139 (693)
T PRK00007 67 ATTCFWKDHR--INIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADK----YKVPRIAFVNKMDR 139 (693)
T ss_pred EEEEEECCeE--EEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHH----cCCCEEEEEECCCC
Confidence 3444556655 555999999888666677788999999999988754333322 2223323 46799999999998
Q ss_pred CCcCCCCHHHHHHHHHHcCC----cEEEeCCCCC
Q psy11289 100 DHQRQVSSMDAQNVARQLRI----PYIECSAKVR 129 (159)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~----~~~~~sa~~~ 129 (159)
.+.. ......++.+.++. ..+++|+..+
T Consensus 140 ~~~~--~~~~~~~i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 140 TGAD--FYRVVEQIKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred CCCC--HHHHHHHHHHHhCCCeeeEEecCccCCc
Confidence 7533 12233344444443 2456666655
No 298
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.40 E-value=2.4e-06 Score=54.32 Aligned_cols=97 Identities=20% Similarity=0.148 Sum_probs=69.3
Q ss_pred EeCCCccc----chHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHH
Q psy11289 35 LDTAGQEE----FSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDA 110 (159)
Q Consensus 35 ~D~~g~~~----~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 110 (159)
+||||.-- +.+.......++|.+++|-.+++++|.-. +.+.. .-..|+|-|++|.|+++... .+..
T Consensus 42 IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~-----p~f~~---~~~k~vIgvVTK~DLaed~d--I~~~ 111 (148)
T COG4917 42 IDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFP-----PGFLD---IGVKKVIGVVTKADLAEDAD--ISLV 111 (148)
T ss_pred cCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCC-----ccccc---ccccceEEEEecccccchHh--HHHH
Confidence 79998632 22223344678999999999999866322 11222 13567999999999986333 4555
Q ss_pred HHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHH
Q psy11289 111 QNVARQLRI-PYIECSAKVRINVDQAFHELVR 141 (159)
Q Consensus 111 ~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~ 141 (159)
+.+..+.|. ++|++|+.++.|++++++.+..
T Consensus 112 ~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 112 KRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred HHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 677777785 4999999999999999988764
No 299
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=4.9e-06 Score=63.35 Aligned_cols=97 Identities=16% Similarity=0.226 Sum_probs=67.3
Q ss_pred EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q psy11289 20 TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADL 99 (159)
Q Consensus 20 ~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 99 (159)
+..+..+-..+.++|-||||+++|..-.-..+.-+|.+++|.|+...-.-+. .++.+.+...++|++-..||.|.
T Consensus 71 sSVMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-----~KLfeVcrlR~iPI~TFiNKlDR 145 (528)
T COG4108 71 SSVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-----LKLFEVCRLRDIPIFTFINKLDR 145 (528)
T ss_pred eeEEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHH-----HHHHHHHhhcCCceEEEeecccc
Confidence 4555566666778889999999997655555677899999999976422221 23345555588999999999997
Q ss_pred CCcCCCCHHHHHHHHHHcCCcEEE
Q psy11289 100 DHQRQVSSMDAQNVARQLRIPYIE 123 (159)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~ 123 (159)
....+ .+...+..+.+++.+++
T Consensus 146 ~~rdP--~ELLdEiE~~L~i~~~P 167 (528)
T COG4108 146 EGRDP--LELLDEIEEELGIQCAP 167 (528)
T ss_pred ccCCh--HHHHHHHHHHhCcceec
Confidence 54333 45566677777755443
No 300
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=2e-06 Score=63.05 Aligned_cols=110 Identities=20% Similarity=0.281 Sum_probs=74.4
Q ss_pred EEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCCh----hhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCC-
Q psy11289 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR----NSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQV- 105 (159)
Q Consensus 31 ~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~- 105 (159)
++.|.|.||++-....+-+-..=.|+.++|..++.+ ++-+++.- ++.. .-..+|++-||.|+...+..
T Consensus 87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~A-----leIi--gik~iiIvQNKIDlV~~E~Al 159 (415)
T COG5257 87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMA-----LEII--GIKNIIIVQNKIDLVSRERAL 159 (415)
T ss_pred EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHH-----Hhhh--ccceEEEEecccceecHHHHH
Confidence 577899999986433222222335999999999874 45555432 1222 22468999999999653322
Q ss_pred -CHHHHHHHHHH---cCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 106 -SSMDAQNVARQ---LRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 106 -~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
+.+++++|.+- -+.|++++||..+.||+.+++.+.+.+-...
T Consensus 160 E~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~ 205 (415)
T COG5257 160 ENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPE 205 (415)
T ss_pred HHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence 23445555542 2578999999999999999999998876443
No 301
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.36 E-value=2e-05 Score=60.44 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=35.1
Q ss_pred CCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHH-HHHHHHHH
Q psy11289 87 EFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQ-AFHELVRI 142 (159)
Q Consensus 87 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~-~~~~l~~~ 142 (159)
.+|+++|+||.|..... +....+.+..+..++.+||+.+.++.+ +.+.+++.
T Consensus 217 ~KPvI~VlNK~D~~~~~----~~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~ 269 (396)
T PRK09602 217 SKPMVIAANKADLPPAE----ENIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDY 269 (396)
T ss_pred CCCEEEEEEchhcccch----HHHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhh
Confidence 48999999999965321 112222222245699999999999998 55555554
No 302
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.36 E-value=1.2e-05 Score=66.20 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=51.9
Q ss_pred ECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 25 IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 25 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
.++..+.+.|.||||+.+|.......++.+|++++|+|+...-......-| ....+ .+.|.|+++||+|..
T Consensus 82 ~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~-~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 82 YEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVL-RQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred ecCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHH-HHHHH----cCCCeEEEEECchhh
Confidence 355567788899999999988888888999999999999875333222222 22222 346789999999975
No 303
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.32 E-value=3.1e-06 Score=59.28 Aligned_cols=56 Identities=23% Similarity=0.132 Sum_probs=41.7
Q ss_pred CCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcC--CcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 87 EFPMLMVGNKADLDHQRQVSSMDAQNVARQLR--IPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 87 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
..|.++++||.|+.+......+...+..++.+ .+++++||++|.|++++++++.+.
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999986533322334444444443 789999999999999999999874
No 304
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=1.9e-05 Score=60.12 Aligned_cols=106 Identities=18% Similarity=0.218 Sum_probs=74.8
Q ss_pred EEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCH
Q psy11289 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD---RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSS 107 (159)
Q Consensus 31 ~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 107 (159)
.+.|.|+||++++-+..-.-+...|.+++|++.++ +.+.+++. ++... .-...++|.+|+|..++..+ .
T Consensus 51 ~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~-----iLdll--gi~~giivltk~D~~d~~r~-e 122 (447)
T COG3276 51 VMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLL-----ILDLL--GIKNGIIVLTKADRVDEARI-E 122 (447)
T ss_pred ceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHH-----HHHhc--CCCceEEEEeccccccHHHH-H
Confidence 56779999999886655555668899999999965 45555542 23332 22356999999998764432 2
Q ss_pred HHHHHHHHHc---CCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 108 MDAQNVARQL---RIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 108 ~~~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
+...+....+ ..+++.+|+.+|+||+++-+.+.....
T Consensus 123 ~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 123 QKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred HHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 2333333333 356899999999999999999999874
No 305
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.29 E-value=9.3e-07 Score=63.19 Aligned_cols=109 Identities=16% Similarity=0.127 Sum_probs=56.9
Q ss_pred EEEEeCCCcccchHHHHHHh--------hcCCEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 32 LDILDTAGQEEFSAMREQYM--------RSGEGFLLVFSVTD---RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 32 ~~l~D~~g~~~~~~~~~~~~--------~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
..++|||||.++-..+.... ...-+++++.|... +..|-... +..+..... .+.|.|.|.||+|+.
T Consensus 93 y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~--L~s~s~~~~-~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 93 YLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSL--LLSLSIMLR-LELPHVNVLSKIDLL 169 (238)
T ss_dssp EEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHH--HHHHHHHHH-HTSEEEEEE--GGGS
T ss_pred EEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHH--HHHHHHHhh-CCCCEEEeeeccCcc
Confidence 45699999987655444443 45678899999864 44443332 222111111 468999999999996
Q ss_pred CcC------------CC-------CHHHHHHHHHHc---C-C-cEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 101 HQR------------QV-------SSMDAQNVARQL---R-I-PYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 101 ~~~------------~~-------~~~~~~~~~~~~---~-~-~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
... .. .......+++-. + . .++.+|+.++.|+.+++..+-+++
T Consensus 170 ~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 170 SKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp -HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 521 00 000111222222 3 3 699999999999999998887654
No 306
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.26 E-value=2.5e-05 Score=58.44 Aligned_cols=104 Identities=20% Similarity=0.225 Sum_probs=66.3
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHH
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMD 109 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 109 (159)
+.+.|.||+|...-... ....+|.++++.+....+.+..+. ..+.+ ..-++|+||+|+...... ...
T Consensus 149 ~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E------~aDIiVVNKaDl~~~~~a-~~~ 215 (332)
T PRK09435 149 YDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIME------LADLIVINKADGDNKTAA-RRA 215 (332)
T ss_pred CCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhh------hhheEEeehhcccchhHH-HHH
Confidence 44566999998743322 466799999997655555554432 21222 234899999998653321 111
Q ss_pred HHHHHHHc----------CCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 110 AQNVARQL----------RIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 110 ~~~~~~~~----------~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
..++...+ ..+++.+||+++.|++++++.+.+.+...
T Consensus 216 ~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 216 AAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred HHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 12222222 24799999999999999999999876533
No 307
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.23 E-value=3e-05 Score=49.03 Aligned_cols=79 Identities=18% Similarity=0.235 Sum_probs=50.4
Q ss_pred cccccccccceEEEEEEECCeeEEEEEEeCCCcccchH---------HHHHHhhcCCEEEEEEECCChh--hHHHHHHHH
Q psy11289 8 VTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSA---------MREQYMRSGEGFLLVFSVTDRN--SFEEIYKFH 76 (159)
Q Consensus 8 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---------~~~~~~~~~~~ii~v~d~~~~~--s~~~~~~~~ 76 (159)
....++++.......+..++..+. ++||||...-.. .....+..+|++++|+|.+++. +...+.
T Consensus 27 ~~~~~~~T~~~~~~~~~~~~~~~~--~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~--- 101 (116)
T PF01926_consen 27 VSNIPGTTRDPVYGQFEYNNKKFI--LVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNIL--- 101 (116)
T ss_dssp ESSSTTSSSSEEEEEEEETTEEEE--EEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHH---
T ss_pred ccccccceeeeeeeeeeeceeeEE--EEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHH---
Confidence 344556666554556677888875 599999743211 1222247899999999988842 233332
Q ss_pred HHHHhhcCCCCCcEEEEEeC
Q psy11289 77 RQILRVKDRDEFPMLMVGNK 96 (159)
Q Consensus 77 ~~i~~~~~~~~~p~ivv~nK 96 (159)
..+ . .+.|+++|.||
T Consensus 102 ~~l----~-~~~~~i~v~NK 116 (116)
T PF01926_consen 102 REL----K-NKKPIILVLNK 116 (116)
T ss_dssp HHH----H-TTSEEEEEEES
T ss_pred HHH----h-cCCCEEEEEcC
Confidence 333 1 56799999998
No 308
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.22 E-value=1e-05 Score=59.20 Aligned_cols=92 Identities=14% Similarity=0.131 Sum_probs=65.9
Q ss_pred HHHHHhhcCCEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEe
Q psy11289 46 MREQYMRSGEGFLLVFSVTDRN-SFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIEC 124 (159)
Q Consensus 46 ~~~~~~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (159)
+.+.-+.+.|-+++++++.+|+ +...+.+++-.... .++..++|.||+|+.+......++.......+|++++.+
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~----~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~ 147 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA----GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFV 147 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH----cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEe
Confidence 3334455678888888888875 45555555433322 577788889999998655443344556677789999999
Q ss_pred CCCCCCCHHHHHHHHHH
Q psy11289 125 SAKVRINVDQAFHELVR 141 (159)
Q Consensus 125 sa~~~~~i~~~~~~l~~ 141 (159)
|++++.++.++.+.+..
T Consensus 148 s~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 148 SAKNGDGLEELAELLAG 164 (301)
T ss_pred cCcCcccHHHHHHHhcC
Confidence 99999999998887754
No 309
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.17 E-value=9.6e-06 Score=60.01 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=63.5
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHH
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMD 109 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 109 (159)
+.+.|.||+|.-... ......+|.++++-.. ++-+++......+ .++|.++++||+|+..........
T Consensus 127 ~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~---~~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 127 YDVIIVETVGVGQSE---VDIANMADTFVVVTIP---GTGDDLQGIKAGL------MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCEEEEeCCCCchhh---hHHHHhhceEEEEecC---CccHHHHHHHHHH------hhhccEEEEEcccccchhHHHHHH
Confidence 456679999865322 2345677888888543 3344444333333 356789999999986533211000
Q ss_pred H------HHHHHH---cCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 110 A------QNVARQ---LRIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 110 ~------~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
. ..+... +..+++.+||+++.|++++++++.+...
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 0 111111 1245999999999999999999998744
No 310
>KOG0461|consensus
Probab=98.12 E-value=3.1e-05 Score=57.62 Aligned_cols=123 Identities=15% Similarity=0.124 Sum_probs=74.6
Q ss_pred CCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC-CcCC
Q psy11289 26 DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD-HQRQ 104 (159)
Q Consensus 26 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~-~~~~ 104 (159)
.+++..+.+.|+||+...-...-.-..=.|..++|.|+.....-+.+..++ +.+. .....++|.||.|.. +...
T Consensus 66 q~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~---~c~klvvvinkid~lpE~qr 140 (522)
T KOG0461|consen 66 QGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGEL---LCKKLVVVINKIDVLPENQR 140 (522)
T ss_pred ccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhh--hhhh---hccceEEEEeccccccchhh
Confidence 567778888999999653222222233458889999997654333333221 2221 233567778888864 3222
Q ss_pred CC--HHHHHHHHHHc------C-CcEEEeCCCCC----CCHHHHHHHHHHHHHhccccCCCC
Q psy11289 105 VS--SMDAQNVARQL------R-IPYIECSAKVR----INVDQAFHELVRIVLLHTKQCKNS 153 (159)
Q Consensus 105 ~~--~~~~~~~~~~~------~-~~~~~~sa~~~----~~i~~~~~~l~~~~~~~~~~~~~~ 153 (159)
.+ .+..+..++.+ | .|++++||..| .++.++.+.+-+++.+.+.+.+.+
T Consensus 141 ~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~gp 202 (522)
T KOG0461|consen 141 ASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEEGP 202 (522)
T ss_pred hhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCCCCC
Confidence 22 12223333333 2 78999999999 788888888888887766544433
No 311
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.12 E-value=0.00031 Score=48.69 Aligned_cols=129 Identities=12% Similarity=0.093 Sum_probs=73.5
Q ss_pred cceEEEEEEECCeeEEEEEEeCCCcccch----H----HHH---HHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcC
Q psy11289 16 EDSYTKQCVIDDIPARLDILDTAGQEEFS----A----MRE---QYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD 84 (159)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----~----~~~---~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~ 84 (159)
.........++|..+ .++||||..... . +.. ....++|++|+|.++.+. +-.+ ...++.+.+..+
T Consensus 37 ~~~~~~~~~~~~~~i--~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~-t~~d-~~~l~~l~~~fg 112 (196)
T cd01852 37 KTCQKESAVWDGRRV--NVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRF-TEEE-EQAVETLQELFG 112 (196)
T ss_pred cccceeeEEECCeEE--EEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCc-CHHH-HHHHHHHHHHhC
Confidence 333344455677765 459999975431 1 111 113578999999999872 2211 122333333322
Q ss_pred C-CCCcEEEEEeCCCCCCcCCCC------HHHHHHHHHHcCCcEEEeC-----CCCCCCHHHHHHHHHHHHHhccc
Q psy11289 85 R-DEFPMLMVGNKADLDHQRQVS------SMDAQNVARQLRIPYIECS-----AKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 85 ~-~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~~~~~s-----a~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
. .-.+++++.|+.|......+. ....+.+.+..+-.++..+ +..+.++.++++.+-+.+.+..+
T Consensus 113 ~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~ 188 (196)
T cd01852 113 EKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKENGG 188 (196)
T ss_pred hHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHhcCC
Confidence 1 124788999999865433211 1233444455555555554 45677899999999888876443
No 312
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.11 E-value=8.7e-06 Score=67.94 Aligned_cols=68 Identities=21% Similarity=0.261 Sum_probs=52.0
Q ss_pred eeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 28 IPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 28 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
..+++++.||||+.+|.......++.+|++|+|+|+.+.-......- +..+.. .++|+++++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~-~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHH-HHHHHH----CCCCEEEEEECCccc
Confidence 35677889999999998877888899999999999987644333222 233322 578999999999975
No 313
>PTZ00416 elongation factor 2; Provisional
Probab=98.09 E-value=1.4e-05 Score=66.68 Aligned_cols=67 Identities=22% Similarity=0.370 Sum_probs=51.0
Q ss_pred eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
...+.|.||||+.+|.......++.+|++|+|+|+.+.-..... ..+..+.. .++|++++.||+|+.
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH----cCCCEEEEEEChhhh
Confidence 56678899999999987778888999999999999875333322 22333333 467999999999985
No 314
>KOG0458|consensus
Probab=98.07 E-value=2.6e-05 Score=61.18 Aligned_cols=112 Identities=15% Similarity=0.149 Sum_probs=70.2
Q ss_pred EEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChh---hHHHH--HHHHHHHHhhcCCCCCcEEEEEeC
Q psy11289 22 QCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRN---SFEEI--YKFHRQILRVKDRDEFPMLMVGNK 96 (159)
Q Consensus 22 ~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~~~~--~~~~~~i~~~~~~~~~p~ivv~nK 96 (159)
...++-....+.|.|.||+..|.+..-.-...||+.++|.|++-.+ .|+.- .+-...+.+..+ -..++|+.||
T Consensus 247 ~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNK 324 (603)
T KOG0458|consen 247 TTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINK 324 (603)
T ss_pred eEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeec
Confidence 3344455555677999999888776666667899999999997632 23311 122334444432 2468889999
Q ss_pred CCCCCcCCCCHHHHH----HHH-HHcC-----CcEEEeCCCCCCCHHHH
Q psy11289 97 ADLDHQRQVSSMDAQ----NVA-RQLR-----IPYIECSAKVRINVDQA 135 (159)
Q Consensus 97 ~D~~~~~~~~~~~~~----~~~-~~~~-----~~~~~~sa~~~~~i~~~ 135 (159)
+|+.+=.+-..+++. .|. +..| +.|++||+++|.|+...
T Consensus 325 mD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 325 MDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 998531111123332 233 3334 56999999999987654
No 315
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=8.8e-05 Score=60.49 Aligned_cols=68 Identities=22% Similarity=0.298 Sum_probs=53.5
Q ss_pred eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q psy11289 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDH 101 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 101 (159)
.++++|+||||+-+|......-++-+|++++|+|+...-..+.-.-| .+..+ .++|.+++.||+|...
T Consensus 75 ~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~-rqa~~----~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 75 DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVW-RQADK----YGVPRILFVNKMDRLG 142 (697)
T ss_pred ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHH-HHHhh----cCCCeEEEEECccccc
Confidence 56778899999999999999999999999999999875444333333 23323 5789999999999753
No 316
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.02 E-value=0.00013 Score=52.73 Aligned_cols=115 Identities=18% Similarity=0.248 Sum_probs=75.2
Q ss_pred EECCeeEEEEEEeCCCccc-------chHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q psy11289 24 VIDDIPARLDILDTAGQEE-------FSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNK 96 (159)
Q Consensus 24 ~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK 96 (159)
+++++. +.|||+||.+. |+.....++...|.++++.++.|+.=--+ .+++..+.... .+.++++++|.
T Consensus 83 ~~~~~~--l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~--~~~~~i~~VtQ 157 (296)
T COG3596 83 SYDGEN--LVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTD-EDFLRDVIILG--LDKRVLFVVTQ 157 (296)
T ss_pred hccccc--eEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCC-HHHHHHHHHhc--cCceeEEEEeh
Confidence 445655 45599999865 55566777889999999999988642211 13344444443 34799999999
Q ss_pred CCCCCc--------CCCCHHHHHHHHHH----c------CCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 97 ADLDHQ--------RQVSSMDAQNVARQ----L------RIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 97 ~D~~~~--------~~~~~~~~~~~~~~----~------~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
+|...+ ...+. ..+++.++ . --|++.+|.+.+.|++.+...++..+-
T Consensus 158 ~D~a~p~~~W~~~~~~p~~-a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 158 ADRAEPGREWDSAGHQPSP-AIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred hhhhccccccccccCCCCH-HHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 997543 11222 22222211 1 135788888999999999999988764
No 317
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=7.8e-05 Score=54.38 Aligned_cols=110 Identities=17% Similarity=0.251 Sum_probs=69.2
Q ss_pred CCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCC
Q psy11289 26 DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD---RNSFEEIYKFHRQILRVKDRDEFP-MLMVGNKADLDH 101 (159)
Q Consensus 26 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~ 101 (159)
.++.+-. .|+||+.+|-+..-.-...+|+.|+|++++| |.+-+++. +.+. -++| ++++.||+|+.+
T Consensus 73 ~~rhyah--VDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL-----larq---vGvp~ivvflnK~Dmvd 142 (394)
T COG0050 73 ANRHYAH--VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL-----LARQ---VGVPYIVVFLNKVDMVD 142 (394)
T ss_pred CCceEEe--ccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh-----hhhh---cCCcEEEEEEecccccC
Confidence 4455444 9999999986644444556799999999998 45555542 1111 3565 556789999976
Q ss_pred cCCC---CHHHHHHHHHHcCC-----cEEEeCCCCC-C-------CHHHHHHHHHHHHHh
Q psy11289 102 QRQV---SSMDAQNVARQLRI-----PYIECSAKVR-I-------NVDQAFHELVRIVLL 145 (159)
Q Consensus 102 ~~~~---~~~~~~~~~~~~~~-----~~~~~sa~~~-~-------~i~~~~~~l~~~~~~ 145 (159)
..++ -+.+.+++..++++ |++.-||+.. . .|.++++.+-+.+..
T Consensus 143 d~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~ 202 (394)
T COG0050 143 DEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT 202 (394)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence 4332 24566788888874 5777777632 1 245555555544433
No 318
>KOG3905|consensus
Probab=97.99 E-value=0.00031 Score=52.01 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=80.3
Q ss_pred eeEEEEEEeCCCcccchHHHHHHhhc----CCEEEEEEECCCh-hhHHHHHHHHHHHHh---------------------
Q psy11289 28 IPARLDILDTAGQEEFSAMREQYMRS----GEGFLLVFSVTDR-NSFEEIYKFHRQILR--------------------- 81 (159)
Q Consensus 28 ~~~~~~l~D~~g~~~~~~~~~~~~~~----~~~ii~v~d~~~~-~s~~~~~~~~~~i~~--------------------- 81 (159)
...++.+|=..|.-.+..+....+.. -..+|++.|+++| ..++.+++|..-+.+
T Consensus 98 d~tr~~VWiLDGd~~h~~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k 177 (473)
T KOG3905|consen 98 DLTRCNVWILDGDLYHKGLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEK 177 (473)
T ss_pred hhhhcceEEecCchhhhhHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 34556668888876555444333221 2578899999999 456667777543333
Q ss_pred ----hc-----------------------------------CCCCCcEEEEEeCCCC----CCcCCCC-------HHHHH
Q psy11289 82 ----VK-----------------------------------DRDEFPMLMVGNKADL----DHQRQVS-------SMDAQ 111 (159)
Q Consensus 82 ----~~-----------------------------------~~~~~p~ivv~nK~D~----~~~~~~~-------~~~~~ 111 (159)
+. ..-++|++||++|+|. ..+.... ....+
T Consensus 178 ~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lR 257 (473)
T KOG3905|consen 178 DWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLR 257 (473)
T ss_pred HHHHhcCccccCCCCcccccccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHH
Confidence 11 0124899999999997 2222211 12347
Q ss_pred HHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 112 NVARQLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 112 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
.||..+|...+.+|++...|++-+...|...++.
T Consensus 258 kFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 258 KFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYG 291 (473)
T ss_pred HHHHHcCceeEEeecccccchHHHHHHHHHHhcC
Confidence 7899999999999999999999999999887653
No 319
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.97 E-value=4.2e-05 Score=41.93 Aligned_cols=45 Identities=22% Similarity=0.380 Sum_probs=30.3
Q ss_pred hcCCEEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy11289 52 RSGEGFLLVFSVTDR--NSFEEIYKFHRQILRVKDRDEFPMLMVGNKAD 98 (159)
Q Consensus 52 ~~~~~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 98 (159)
.=+++++|++|++.. -+.++...+++.+.... .++|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 346899999999875 45666667788887765 5789999999998
No 320
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.95 E-value=0.00039 Score=54.43 Aligned_cols=139 Identities=15% Similarity=0.170 Sum_probs=89.5
Q ss_pred ccccccccceEEE-EEEEC--CeeEEEEEEeCCCcccchHHHHHHhh----cCCEEEEEEECCChhhH-HHHHHHHHHHH
Q psy11289 9 TDYDPTIEDSYTK-QCVID--DIPARLDILDTAGQEEFSAMREQYMR----SGEGFLLVFSVTDRNSF-EEIYKFHRQIL 80 (159)
Q Consensus 9 ~~~~pt~~~~~~~-~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~----~~~~ii~v~d~~~~~s~-~~~~~~~~~i~ 80 (159)
+++.++.|-.|.. .+.-+ +...++.+|-.+|...+..+..-.+. .--.+++|.|++.|..+ +.+.+|+.-+.
T Consensus 49 e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~ 128 (472)
T PF05783_consen 49 EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLR 128 (472)
T ss_pred CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHH
Confidence 3456777755532 23222 24567888999887666665544332 22688999999998653 34445533222
Q ss_pred h-------------------------hcC------------------------------------CCCCcEEEEEeCCCC
Q psy11289 81 R-------------------------VKD------------------------------------RDEFPMLMVGNKADL 99 (159)
Q Consensus 81 ~-------------------------~~~------------------------------------~~~~p~ivv~nK~D~ 99 (159)
+ +.+ ..++|++||++|+|.
T Consensus 129 ~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~ 208 (472)
T PF05783_consen 129 EHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDK 208 (472)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccccCCCCCcccccccCcceEEEEecccH
Confidence 2 100 013799999999996
Q ss_pred CC----cCCCC-------HHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 100 DH----QRQVS-------SMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 100 ~~----~~~~~-------~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.. +.... .+..+.+|-.+|..++.+|++...+++-++..|...+....
T Consensus 209 ~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~~ 267 (472)
T PF05783_consen 209 IETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGFP 267 (472)
T ss_pred HHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccCC
Confidence 31 11111 12356788899999999999999999999999888776443
No 321
>KOG0085|consensus
Probab=97.94 E-value=1.6e-05 Score=56.06 Aligned_cols=142 Identities=16% Similarity=0.172 Sum_probs=96.7
Q ss_pred cccccccccccceEEEEEEE--------CCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCC----------hh
Q psy11289 6 YFVTDYDPTIEDSYTKQCVI--------DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD----------RN 67 (159)
Q Consensus 6 ~f~~~~~pt~~~~~~~~~~~--------~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~ 67 (159)
.-.+.|.||..+.....+.. +-.++.+.+.|++|+..-+..|-.+++++..++|++.++. +.
T Consensus 167 ia~~~ylPTqQDvLRvRvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnEN 246 (359)
T KOG0085|consen 167 IATPGYLPTQQDVLRVRVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNEN 246 (359)
T ss_pred hcCcccCcchhhhheeecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchh
Confidence 33567778776554333222 2245567789999998888899999999988888766543 34
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcC----------------CCCHHHHHHHHHHc----C------CcE
Q psy11289 68 SFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQR----------------QVSSMDAQNVARQL----R------IPY 121 (159)
Q Consensus 68 s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~----------------~~~~~~~~~~~~~~----~------~~~ 121 (159)
..++-..++..|..+..-.+.++|+..||.|+.+++ .-+.+.+++|..+. + +--
T Consensus 247 RMeESkALFrTIi~yPWF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~S 326 (359)
T KOG0085|consen 247 RMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYS 326 (359)
T ss_pred hHHHHHHHHHHHhccccccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeee
Confidence 455556677777787777789999999999985421 11122333443221 1 224
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 122 IECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 122 ~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
+.++|.+..||.-+|..+-..+++..
T Consensus 327 HfTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 327 HFTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred eeeecccchhHHHHHHHHHHHHHHhh
Confidence 67899999999999998887777654
No 322
>KOG0468|consensus
Probab=97.93 E-value=2.3e-05 Score=62.64 Aligned_cols=69 Identities=25% Similarity=0.431 Sum_probs=55.1
Q ss_pred CCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q psy11289 26 DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADL 99 (159)
Q Consensus 26 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 99 (159)
+++...+++.||||+-.|......-++-+|++++++|+.+.-.++. .+.++... ..+.|+++|.||.|.
T Consensus 193 ~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhai----q~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 193 KGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAI----QNRLPIVVVINKVDR 261 (971)
T ss_pred cCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHH----hccCcEEEEEehhHH
Confidence 5778889999999999998888888899999999999988766643 22232222 257899999999996
No 323
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.86 E-value=0.00016 Score=51.38 Aligned_cols=93 Identities=16% Similarity=0.159 Sum_probs=53.4
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEEeCCCCCCcCC-CC-
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM-LMVGNKADLDHQRQ-VS- 106 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~D~~~~~~-~~- 106 (159)
.++.+.||||.. ..+ -...+.+|++++++|++........ ..+..+.. .+.|. ++|.||.|+.+... ..
T Consensus 83 ~~i~~vDtPg~~--~~~-l~~ak~aDvVllviDa~~~~~~~~~-~i~~~l~~----~g~p~vi~VvnK~D~~~~~~~~~~ 154 (225)
T cd01882 83 RRLTFIECPNDI--NAM-IDIAKVADLVLLLIDASFGFEMETF-EFLNILQV----HGFPRVMGVLTHLDLFKKNKTLRK 154 (225)
T ss_pred ceEEEEeCCchH--HHH-HHHHHhcCEEEEEEecCcCCCHHHH-HHHHHHHH----cCCCeEEEEEeccccCCcHHHHHH
Confidence 345679999864 222 2346889999999999865433221 22222222 34675 45999999863221 10
Q ss_pred -HHHHHH-HHHH--cCCcEEEeCCCCCC
Q psy11289 107 -SMDAQN-VARQ--LRIPYIECSAKVRI 130 (159)
Q Consensus 107 -~~~~~~-~~~~--~~~~~~~~sa~~~~ 130 (159)
..+.+. +..+ .+.+++.+||++..
T Consensus 155 ~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 155 TKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 111111 2222 13679999999874
No 324
>KOG3886|consensus
Probab=97.85 E-value=5.1e-05 Score=53.47 Aligned_cols=108 Identities=20% Similarity=0.290 Sum_probs=63.2
Q ss_pred EEEEEEeCCCcccchH-----HHHHHhhcCCEEEEEEECCChhhHHHHHHH---HHHHHhhcCCCCCcEEEEEeCCCCCC
Q psy11289 30 ARLDILDTAGQEEFSA-----MREQYMRSGEGFLLVFSVTDRNSFEEIYKF---HRQILRVKDRDEFPMLMVGNKADLDH 101 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~-----~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~---~~~i~~~~~~~~~p~ivv~nK~D~~~ 101 (159)
..+.+||++|++.+-. .....+++.++++++||++..+-..++..+ ++.+.+. .+..-+....+|+|+..
T Consensus 53 l~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 53 LVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred heeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcc
Confidence 4578899999985421 234557899999999999887554444332 2333333 25667888899999854
Q ss_pred cC--CCCHHHHHH----HHHHcCCcEEEeCCCCCCCHHHHHHHHH
Q psy11289 102 QR--QVSSMDAQN----VARQLRIPYIECSAKVRINVDQAFHELV 140 (159)
Q Consensus 102 ~~--~~~~~~~~~----~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 140 (159)
.. ....+...+ +....++.++++|--+ ..+..++..+.
T Consensus 131 ~d~r~~if~~r~~~l~~~s~~~~~~~f~TsiwD-etl~KAWS~iv 174 (295)
T KOG3886|consen 131 EDARELIFQRRKEDLRRLSRPLECKCFPTSIWD-ETLYKAWSSIV 174 (295)
T ss_pred cchHHHHHHHHHHHHHHhcccccccccccchhh-HHHHHHHHHHH
Confidence 32 222222222 2223345677777654 23333333333
No 325
>PTZ00258 GTP-binding protein; Provisional
Probab=97.81 E-value=0.0005 Score=52.57 Aligned_cols=44 Identities=20% Similarity=0.183 Sum_probs=28.7
Q ss_pred CCCcEEEEEeCC--CCCCcCCCCHHHHHHHHHHc-CCcEEEeCCCCC
Q psy11289 86 DEFPMLMVGNKA--DLDHQRQVSSMDAQNVARQL-RIPYIECSAKVR 129 (159)
Q Consensus 86 ~~~p~ivv~nK~--D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~ 129 (159)
..+|+++|+|+. |+.....-..+....++... +.+++.+||+-.
T Consensus 219 t~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E 265 (390)
T PTZ00258 219 TAKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFE 265 (390)
T ss_pred hcCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHH
Confidence 358999999999 75221111234555666666 478999998643
No 326
>KOG1532|consensus
Probab=97.80 E-value=0.00029 Score=51.06 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=63.8
Q ss_pred EEEEEEeCCCccc-c-----hHHHHHHhh--cCCEEEEEEECC---ChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy11289 30 ARLDILDTAGQEE-F-----SAMREQYMR--SGEGFLLVFSVT---DRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKAD 98 (159)
Q Consensus 30 ~~~~l~D~~g~~~-~-----~~~~~~~~~--~~~~ii~v~d~~---~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 98 (159)
+...+.|||||.. | .+.....+. ...++++++|.. +|.+|-.-.-+--.|+. ....|.|++.||+|
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSily---ktklp~ivvfNK~D 192 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILY---KTKLPFIVVFNKTD 192 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHH---hccCCeEEEEeccc
Confidence 4456699999843 2 222222222 345666666653 34444332211112222 25689999999999
Q ss_pred CCCcCC----CC----HHHHHH-----------------HHHH-cCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 99 LDHQRQ----VS----SMDAQN-----------------VARQ-LRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 99 ~~~~~~----~~----~~~~~~-----------------~~~~-~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
+.+..- .+ .+++.+ +-.- .++..+.|||.+|.|.++.|..+-..+.+.
T Consensus 193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 865310 00 011111 0000 146789999999999999999887665443
No 327
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.74 E-value=0.00068 Score=51.32 Aligned_cols=104 Identities=20% Similarity=0.183 Sum_probs=64.2
Q ss_pred EEEEeCCCcccchH--HHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCC--H
Q psy11289 32 LDILDTAGQEEFSA--MREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVS--S 107 (159)
Q Consensus 32 ~~l~D~~g~~~~~~--~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~--~ 107 (159)
+.|.|+.|+++|-. +.-.+-+..|-.++++.+++.-+-- .+-...+.-. ...|++++.+|+|+..+..+. .
T Consensus 203 VsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~--tkEHLgi~~a---~~lPviVvvTK~D~~~ddr~~~v~ 277 (527)
T COG5258 203 VSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM--TKEHLGIALA---MELPVIVVVTKIDMVPDDRFQGVV 277 (527)
T ss_pred EEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh--hhHhhhhhhh---hcCCEEEEEEecccCcHHHHHHHH
Confidence 56799999999843 3333446889999999998854321 1111122222 467999999999996432211 1
Q ss_pred HHHHH----------------------HHHHcC---CcEEEeCCCCCCCHHHHHHHHH
Q psy11289 108 MDAQN----------------------VARQLR---IPYIECSAKVRINVDQAFHELV 140 (159)
Q Consensus 108 ~~~~~----------------------~~~~~~---~~~~~~sa~~~~~i~~~~~~l~ 140 (159)
++... .+-+.+ +|++.+|+.+|.|++-+.+-+.
T Consensus 278 ~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 278 EEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred HHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 11111 111122 5799999999999975544433
No 328
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.69 E-value=0.0011 Score=50.99 Aligned_cols=84 Identities=13% Similarity=0.178 Sum_probs=56.4
Q ss_pred cCCEEEEEE-ECC--C--hhhHHHH-HHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCC
Q psy11289 53 SGEGFLLVF-SVT--D--RNSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSA 126 (159)
Q Consensus 53 ~~~~ii~v~-d~~--~--~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 126 (159)
.++..|+|. |.+ + ++.+..+ .+|+..+.+ .++|++++.|+.|-.... +.+....+..+++++++.+|+
T Consensus 144 hstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~----~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c 217 (492)
T TIGR02836 144 HSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE----LNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDV 217 (492)
T ss_pred cCcEEEEEEcCCCccccccccchHHHHHHHHHHHh----cCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEH
Confidence 788888888 664 1 2334333 367777665 678999999999932212 344455677788999777777
Q ss_pred C--CCCCHHHHHHHHHHH
Q psy11289 127 K--VRINVDQAFHELVRI 142 (159)
Q Consensus 127 ~--~~~~i~~~~~~l~~~ 142 (159)
. +...|..+++.++..
T Consensus 218 ~~l~~~DI~~il~~vL~E 235 (492)
T TIGR02836 218 ESMRESDILSVLEEVLYE 235 (492)
T ss_pred HHcCHHHHHHHHHHHHhc
Confidence 5 456777777777643
No 329
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.59 E-value=0.00055 Score=49.06 Aligned_cols=68 Identities=18% Similarity=0.157 Sum_probs=42.4
Q ss_pred EEEEEEeCCCcccc-------------hHHHHHHhh-cCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEe
Q psy11289 30 ARLDILDTAGQEEF-------------SAMREQYMR-SGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGN 95 (159)
Q Consensus 30 ~~~~l~D~~g~~~~-------------~~~~~~~~~-~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~n 95 (159)
..+.|.|+||..+. ..+...|++ ..+.+++|.|++..-+-.....+.+.+. ..+.|+++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld----~~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD----PQGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH----HcCCcEEEEEE
Confidence 45677999998531 234566777 4569999998864221112112222222 25679999999
Q ss_pred CCCCCC
Q psy11289 96 KADLDH 101 (159)
Q Consensus 96 K~D~~~ 101 (159)
|.|..+
T Consensus 201 K~D~~~ 206 (240)
T smart00053 201 KLDLMD 206 (240)
T ss_pred CCCCCC
Confidence 999864
No 330
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.58 E-value=0.0028 Score=47.05 Aligned_cols=80 Identities=16% Similarity=0.133 Sum_probs=44.3
Q ss_pred EECCeeEEEEEEeCCCcccchHHHH---HHh------hcCCEEEEEEECCCh--hhHHHHHHHHHHHHhhcC-CCCCcEE
Q psy11289 24 VIDDIPARLDILDTAGQEEFSAMRE---QYM------RSGEGFLLVFSVTDR--NSFEEIYKFHRQILRVKD-RDEFPML 91 (159)
Q Consensus 24 ~~~~~~~~~~l~D~~g~~~~~~~~~---~~~------~~~~~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~-~~~~p~i 91 (159)
..+|.+ +.+|||||......... ..+ .+.|++|+|..++.. ...+ ...++.+....+ ..-.++|
T Consensus 82 ~~~G~~--l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~D--kqlLk~Iqe~FG~~iw~~~I 157 (313)
T TIGR00991 82 TRAGFT--LNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLD--GQVIRAITDSFGKDIWRKSL 157 (313)
T ss_pred EECCeE--EEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHH--HHHHHHHHHHhhhhhhccEE
Confidence 346655 56699999875432211 112 268999999665432 2121 122333333321 1234789
Q ss_pred EEEeCCCCCCcCCCCH
Q psy11289 92 MVGNKADLDHQRQVSS 107 (159)
Q Consensus 92 vv~nK~D~~~~~~~~~ 107 (159)
++.|+.|....+..+.
T Consensus 158 VVfTh~d~~~pd~~~~ 173 (313)
T TIGR00991 158 VVLTHAQFSPPDGLEY 173 (313)
T ss_pred EEEECCccCCCCCCCH
Confidence 9999999765444443
No 331
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.57 E-value=0.0002 Score=49.19 Aligned_cols=55 Identities=20% Similarity=0.118 Sum_probs=45.0
Q ss_pred cEEEEEeCCCCCCcCCCCHHHHHHHHHHc--CCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 89 PMLMVGNKADLDHQRQVSSMDAQNVARQL--RIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 89 p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
.-++|+||.|+...-..+.+...+-+++. +.+++++|+++|.|++++++++....
T Consensus 144 aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 144 ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 45789999999876666666666666665 48899999999999999999987654
No 332
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.53 E-value=0.0026 Score=43.32 Aligned_cols=86 Identities=19% Similarity=0.180 Sum_probs=59.6
Q ss_pred eeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCH
Q psy11289 28 IPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSS 107 (159)
Q Consensus 28 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 107 (159)
..+.+.+.|+|+... ......+..+|.++++...+ ..+...+.++++.+.+ .+.|+.+|.||.|.... ..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~----~~~~~~vV~N~~~~~~~---~~ 160 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRH----FGIPVGVVINKYDLNDE---IA 160 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHH----cCCCEEEEEeCCCCCcc---hH
Confidence 455677799996643 23345568899999999887 4466667766665544 34578899999996432 24
Q ss_pred HHHHHHHHHcCCcEEE
Q psy11289 108 MDAQNVARQLRIPYIE 123 (159)
Q Consensus 108 ~~~~~~~~~~~~~~~~ 123 (159)
++..++++++|++++.
T Consensus 161 ~~~~~~~~~~~~~vl~ 176 (179)
T cd03110 161 EEIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHHcCCCeEE
Confidence 5667788888887653
No 333
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.39 E-value=0.00069 Score=45.46 Aligned_cols=62 Identities=19% Similarity=0.326 Sum_probs=43.1
Q ss_pred EEEEeCCCccc----chHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy11289 32 LDILDTAGQEE----FSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKA 97 (159)
Q Consensus 32 ~~l~D~~g~~~----~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 97 (159)
+.|+|+||... ...++..++..+|++|+|.++++.-+-.....+.+.... ....+++|.||.
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~----~~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP----DKSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT----TCSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC----CCCeEEEEEcCC
Confidence 55699999843 236788889999999999999986655554444433333 333488888884
No 334
>KOG0466|consensus
Probab=97.34 E-value=0.00036 Score=51.32 Aligned_cols=107 Identities=19% Similarity=0.243 Sum_probs=67.7
Q ss_pred EEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCC----hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCC
Q psy11289 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD----RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVS 106 (159)
Q Consensus 31 ~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~ 106 (159)
++.|.|+||++-.....-.-..-.|+++++...+. |.+-+++... ++. .=+.++++-||.|+..+.+..
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav--eiM-----~LkhiiilQNKiDli~e~~A~ 198 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV--EIM-----KLKHIIILQNKIDLIKESQAL 198 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH--HHh-----hhceEEEEechhhhhhHHHHH
Confidence 46789999998643311111222477777776654 4555555321 121 224789999999997644332
Q ss_pred H--HHHHHHHHH---cCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 107 S--MDAQNVARQ---LRIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 107 ~--~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
+ ++...|.+. .|.|++++||.-+.|++-+.+.+++.+-
T Consensus 199 eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 199 EQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred HHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 1 222333331 2578999999999999999998887764
No 335
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.31 E-value=0.00062 Score=49.97 Aligned_cols=56 Identities=27% Similarity=0.150 Sum_probs=39.9
Q ss_pred CCcEEEEEeCCCCCCcCCCCHHHHHHHHHHc--CCcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 87 EFPMLMVGNKADLDHQRQVSSMDAQNVARQL--RIPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 87 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
..+-++|.||+|+........+...+..+.+ ..+++++||++|.|++++.+|+..+
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999998642222233333333333 4789999999999999999999764
No 336
>KOG0465|consensus
Probab=97.24 E-value=0.0021 Score=51.26 Aligned_cols=66 Identities=27% Similarity=0.362 Sum_probs=50.0
Q ss_pred eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q psy11289 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADL 99 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 99 (159)
...++++||||+..|.-..+.-++--|+++++++....-.-+...-| .++.+ -++|-|...||+|.
T Consensus 103 ~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~-rQ~~r----y~vP~i~FiNKmDR 168 (721)
T KOG0465|consen 103 DYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVW-RQMKR----YNVPRICFINKMDR 168 (721)
T ss_pred cceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHH-HHHHh----cCCCeEEEEehhhh
Confidence 56788899999999987788888888999999998765333333344 33434 46899999999986
No 337
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.23 E-value=0.018 Score=43.81 Aligned_cols=41 Identities=20% Similarity=0.168 Sum_probs=27.8
Q ss_pred CCcEEEEEeCCCCCC-cCCCCHHHHHHHHHHcCCcEEEeCCC
Q psy11289 87 EFPMLMVGNKADLDH-QRQVSSMDAQNVARQLRIPYIECSAK 127 (159)
Q Consensus 87 ~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~ 127 (159)
.+|+++++|+.|..- ...-..+...+++...+.+++.+||.
T Consensus 199 ~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~ 240 (364)
T PRK09601 199 AKPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAK 240 (364)
T ss_pred cCCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHH
Confidence 489999999998421 11112345566666778889999984
No 338
>KOG3887|consensus
Probab=97.23 E-value=0.0038 Score=44.62 Aligned_cols=118 Identities=17% Similarity=0.223 Sum_probs=70.4
Q ss_pred eeEEEEEEeCCCcccc-hH--HHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh-cCCCCCcEEEEEeCCCCCCc-
Q psy11289 28 IPARLDILDTAGQEEF-SA--MREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV-KDRDEFPMLMVGNKADLDHQ- 102 (159)
Q Consensus 28 ~~~~~~l~D~~g~~~~-~~--~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~p~ivv~nK~D~~~~- 102 (159)
.-+.+++||.|||-.+ .+ -.+..++++.++++|.|+-+. -.+.+.++...+.+. .-.+++-+=+...|.|...+
T Consensus 73 sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 73 SFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred hhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 3456888999999654 21 246778999999999998553 333344433333221 12356777788999996422
Q ss_pred CCCC-HHH-----HHHHHHHcC---C--cEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 103 RQVS-SMD-----AQNVARQLR---I--PYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 103 ~~~~-~~~-----~~~~~~~~~---~--~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
-.+. ... ...++ ..| + .++-+|-.+ ..|.++|..+++.+..+.+
T Consensus 152 ~kietqrdI~qr~~d~l~-d~gle~v~vsf~LTSIyD-HSIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 152 FKIETQRDIHQRTNDELA-DAGLEKVQVSFYLTSIYD-HSIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred hhhhhHHHHHHHhhHHHH-hhhhccceEEEEEeeecc-hHHHHHHHHHHHHHhhhch
Confidence 1111 111 11222 223 2 355555554 6799999998888776654
No 339
>KOG0460|consensus
Probab=97.12 E-value=0.0036 Score=46.81 Aligned_cols=91 Identities=20% Similarity=0.238 Sum_probs=59.3
Q ss_pred CeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCC-cEEEEEeCCCCCCc
Q psy11289 27 DIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD---RNSFEEIYKFHRQILRVKDRDEF-PMLMVGNKADLDHQ 102 (159)
Q Consensus 27 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~-p~ivv~nK~D~~~~ 102 (159)
.+.+-- .|+||+.+|-+..-.-....|+.|+|+.++| |++-+++. +.+. -++ .+++..||.|+.++
T Consensus 116 ~RhYaH--~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlL-----LArQ---VGV~~ivvfiNKvD~V~d 185 (449)
T KOG0460|consen 116 KRHYAH--TDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLL-----LARQ---VGVKHIVVFINKVDLVDD 185 (449)
T ss_pred cccccc--CCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHH-----HHHH---cCCceEEEEEecccccCC
Confidence 344444 8999999986544444456799999999998 44555431 1221 233 57788999998743
Q ss_pred CC---CCHHHHHHHHHHcC-----CcEEEeCCC
Q psy11289 103 RQ---VSSMDAQNVARQLR-----IPYIECSAK 127 (159)
Q Consensus 103 ~~---~~~~~~~~~~~~~~-----~~~~~~sa~ 127 (159)
.+ +-+-+.+++..++| +|++.-||+
T Consensus 186 ~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 186 PEMLELVEMEIRELLSEFGFDGDNTPVIRGSAL 218 (449)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeeecchh
Confidence 22 22456677888876 568876665
No 340
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.11 E-value=0.011 Score=41.62 Aligned_cols=129 Identities=15% Similarity=0.120 Sum_probs=71.2
Q ss_pred ceEEEEEEECCeeEEEEEEeCCCcccch----HH---HH----HHhhcCCEEEEEEECCChhh-HHHHHHHHHHHHhhcC
Q psy11289 17 DSYTKQCVIDDIPARLDILDTAGQEEFS----AM---RE----QYMRSGEGFLLVFSVTDRNS-FEEIYKFHRQILRVKD 84 (159)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~D~~g~~~~~----~~---~~----~~~~~~~~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~ 84 (159)
........++|..+.+ +||||..... .. .. ....+.|++|+|+.+..... -..+-.++..+....
T Consensus 38 ~~~~~~~~~~g~~v~V--IDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~- 114 (212)
T PF04548_consen 38 ECQKYSGEVDGRQVTV--IDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE- 114 (212)
T ss_dssp S-EEEEEEETTEEEEE--EE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG-
T ss_pred ccceeeeeecceEEEE--EeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH-
Confidence 3334555788988766 9999964321 11 11 12356899999999884321 112223333332211
Q ss_pred CCCCcEEEEEeCCCCCCcCCCC-------HHHHHHHHHHcCCcEEEeCCC------CCCCHHHHHHHHHHHHHhcccc
Q psy11289 85 RDEFPMLMVGNKADLDHQRQVS-------SMDAQNVARQLRIPYIECSAK------VRINVDQAFHELVRIVLLHTKQ 149 (159)
Q Consensus 85 ~~~~p~ivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~~~~~sa~------~~~~i~~~~~~l~~~~~~~~~~ 149 (159)
--..++||.+..|......+. ......+.+..+-.++..+.. ....+.++++.+-..+.+....
T Consensus 115 -~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~ 191 (212)
T PF04548_consen 115 -IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQ 191 (212)
T ss_dssp -GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred -HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCC
Confidence 124688888888865544321 112344555566678887777 3356888888887777666543
No 341
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.09 E-value=0.018 Score=41.58 Aligned_cols=89 Identities=16% Similarity=0.148 Sum_probs=47.9
Q ss_pred cccccccceEEEEEEECCeeEEEEEEeCCCcccch--H-H-------HHHHhh--cCCEEEEEEECCChh-hHHHHHHHH
Q psy11289 10 DYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFS--A-M-------REQYMR--SGEGFLLVFSVTDRN-SFEEIYKFH 76 (159)
Q Consensus 10 ~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--~-~-------~~~~~~--~~~~ii~v~d~~~~~-s~~~~~~~~ 76 (159)
.+.|++..........+|.+ +.+|||||..... . . ...++. ..+++++|..++... +..+ ...+
T Consensus 61 ~~~~~T~~~~~~~~~~~g~~--i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~ll 137 (249)
T cd01853 61 AFQSETLRVREVSGTVDGFK--LNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLL 137 (249)
T ss_pred CCCCceEEEEEEEEEECCeE--EEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHH
Confidence 34444443333344556655 4569999986541 1 1 122332 578888887665421 2221 1233
Q ss_pred HHHHhhcCC-CCCcEEEEEeCCCCCC
Q psy11289 77 RQILRVKDR-DEFPMLMVGNKADLDH 101 (159)
Q Consensus 77 ~~i~~~~~~-~~~p~ivv~nK~D~~~ 101 (159)
+.+....+. --.++++|.||+|...
T Consensus 138 k~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 138 RAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHHhChhhHhCEEEEEeCCccCC
Confidence 334332221 1247999999999753
No 342
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.79 E-value=0.0034 Score=47.03 Aligned_cols=93 Identities=22% Similarity=0.177 Sum_probs=60.5
Q ss_pred CCCc-ccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHH
Q psy11289 37 TAGQ-EEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVAR 115 (159)
Q Consensus 37 ~~g~-~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 115 (159)
.+|+ .++..........+|.++-|.|+.+|.+-.. ..+.++. .+.|.++|+||.|+..... ..+=...+.+
T Consensus 17 ~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v--~~k~~i~vlNK~DL~~~~~-~~~W~~~~~~ 88 (322)
T COG1161 17 FPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIV--KEKPKLLVLNKADLAPKEV-TKKWKKYFKK 88 (322)
T ss_pred CCCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHH--ccCCcEEEEehhhcCCHHH-HHHHHHHHHh
Confidence 3665 3445566777889999999999999876543 2233332 3456699999999976332 2222334444
Q ss_pred HcCCcEEEeCCCCCCCHHHHHH
Q psy11289 116 QLRIPYIECSAKVRINVDQAFH 137 (159)
Q Consensus 116 ~~~~~~~~~sa~~~~~i~~~~~ 137 (159)
+.+...+.+++..+.+...+..
T Consensus 89 ~~~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 89 EEGIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred cCCCccEEEEeecccCccchHH
Confidence 4467788888887776555553
No 343
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.71 E-value=0.026 Score=41.61 Aligned_cols=104 Identities=18% Similarity=0.236 Sum_probs=62.7
Q ss_pred EEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHH-
Q psy11289 32 LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDA- 110 (159)
Q Consensus 32 ~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~- 110 (159)
+.|.+|.|--+.. ......+|.+++|.-+.-.+..+-++ ..+.+. --++|+||.|..+... ...+.
T Consensus 146 vIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK---~GimEi------aDi~vINKaD~~~A~~-a~r~l~ 212 (323)
T COG1703 146 VIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIK---AGIMEI------ADIIVINKADRKGAEK-AARELR 212 (323)
T ss_pred EEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHH---hhhhhh------hheeeEeccChhhHHH-HHHHHH
Confidence 4557777654422 23345689999888666555555543 233333 3388999999543211 11111
Q ss_pred --HHHHH----HcC--CcEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 111 --QNVAR----QLR--IPYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 111 --~~~~~----~~~--~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
.++.. ..+ -|++.+||..|.|++++++.+.+.......
T Consensus 213 ~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~ 258 (323)
T COG1703 213 SALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTE 258 (323)
T ss_pred HHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHh
Confidence 11111 112 358999999999999999999876654443
No 344
>KOG0467|consensus
Probab=96.66 E-value=0.0063 Score=49.78 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=48.6
Q ss_pred CeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q psy11289 27 DIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADL 99 (159)
Q Consensus 27 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 99 (159)
-+.+.++++|+||+-+|.+......+=+|+.++++|+...---+... .+.+... .+.-+++|.||+|.
T Consensus 69 ~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~-vlrq~~~----~~~~~~lvinkidr 136 (887)
T KOG0467|consen 69 HKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYA-VLRQAWI----EGLKPILVINKIDR 136 (887)
T ss_pred cCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHH-HHHHHHH----ccCceEEEEehhhh
Confidence 35577888999999999998888888899999999997642222111 1122222 34567889999994
No 345
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.56 E-value=0.0071 Score=41.18 Aligned_cols=44 Identities=20% Similarity=0.176 Sum_probs=28.0
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q psy11289 55 EGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDH 101 (159)
Q Consensus 55 ~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 101 (159)
|++++|.|+.++.+-.. ..+...+. . ...+.|+++|.||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l-~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-Q-AGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-h-ccCCCCEEEEEehhhcCC
Confidence 78999999988643221 11222211 1 114589999999999864
No 346
>KOG1424|consensus
Probab=96.52 E-value=0.0067 Score=47.57 Aligned_cols=75 Identities=16% Similarity=0.196 Sum_probs=50.5
Q ss_pred chHHHHHHhhcCCEEEEEEECCChhhH--HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHH---HHHc
Q psy11289 43 FSAMREQYMRSGEGFLLVFSVTDRNSF--EEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNV---ARQL 117 (159)
Q Consensus 43 ~~~~~~~~~~~~~~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~---~~~~ 117 (159)
++++|.. ++.+|+|+.++|+.+|-=| .++..+...+ .+.+..+++.||.||.. .+....+ ..+.
T Consensus 165 WRQLWRV-lErSDivvqIVDARnPllfr~~dLe~Yvke~-----d~~K~~~LLvNKaDLl~-----~~qr~aWa~YF~~~ 233 (562)
T KOG1424|consen 165 WRQLWRV-LERSDIVVQIVDARNPLLFRSPDLEDYVKEV-----DPSKANVLLVNKADLLP-----PEQRVAWAEYFRQN 233 (562)
T ss_pred HHHHHHH-HhhcceEEEEeecCCccccCChhHHHHHhcc-----ccccceEEEEehhhcCC-----HHHHHHHHHHHHhc
Confidence 3444443 4678999999999998544 2334443332 24578899999999975 4444444 4455
Q ss_pred CCcEEEeCCCC
Q psy11289 118 RIPYIECSAKV 128 (159)
Q Consensus 118 ~~~~~~~sa~~ 128 (159)
+++++.-||+.
T Consensus 234 ni~~vf~SA~~ 244 (562)
T KOG1424|consen 234 NIPVVFFSALA 244 (562)
T ss_pred CceEEEEeccc
Confidence 79999999886
No 347
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.48 E-value=0.0023 Score=46.09 Aligned_cols=99 Identities=18% Similarity=0.211 Sum_probs=57.4
Q ss_pred EEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHH
Q psy11289 32 LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQ 111 (159)
Q Consensus 32 ~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 111 (159)
+.|.+|.|--+.. .....-+|.+++|..+.-.+..+.++. .+.+. +-++|+||.|.+..+.. ..+..
T Consensus 124 ~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~Ka---GimEi------aDi~vVNKaD~~gA~~~-~~~l~ 190 (266)
T PF03308_consen 124 VIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKA---GIMEI------ADIFVVNKADRPGADRT-VRDLR 190 (266)
T ss_dssp EEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-T---THHHH-------SEEEEE--SHHHHHHH-HHHHH
T ss_pred EEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhh---hhhhh------ccEEEEeCCChHHHHHH-HHHHH
Confidence 3446666543221 233567899999998877666655432 23333 33899999996432211 11111
Q ss_pred HHHHH-------cCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 112 NVARQ-------LRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 112 ~~~~~-------~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
....- +.-|++.+||.++.|++++++.+.+.-
T Consensus 191 ~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 191 SMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp HHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred HHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 11111 124699999999999999999988644
No 348
>KOG0464|consensus
Probab=96.44 E-value=0.0012 Score=50.51 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=57.0
Q ss_pred EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q psy11289 20 TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADL 99 (159)
Q Consensus 20 ~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 99 (159)
+.-+..+=+-.+++++||||+-.|+-..+.+++--||++.|||.+-.-.-+.+.-|.+. +..++|-....||+|.
T Consensus 92 saav~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqa-----dk~~ip~~~finkmdk 166 (753)
T KOG0464|consen 92 SAAVNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA-----DKFKIPAHCFINKMDK 166 (753)
T ss_pred eeeeecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc-----cccCCchhhhhhhhhh
Confidence 33344454556677899999999988899999999999999999875555555556432 2356788888999996
Q ss_pred C
Q psy11289 100 D 100 (159)
Q Consensus 100 ~ 100 (159)
.
T Consensus 167 ~ 167 (753)
T KOG0464|consen 167 L 167 (753)
T ss_pred h
Confidence 3
No 349
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=96.37 E-value=0.088 Score=35.74 Aligned_cols=91 Identities=9% Similarity=0.094 Sum_probs=69.0
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCH
Q psy11289 53 SGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINV 132 (159)
Q Consensus 53 ~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 132 (159)
..|-|+|++|.+..-|+..++.=+..+...-- .+ -+.++++.....+.-.+...+..+++..+.+|++.+.-.+.++.
T Consensus 64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~ff-lG-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~ 141 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFF-LG-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGR 141 (176)
T ss_pred eeEEEEEEEecCCcccHHHHHHHHhhCChhhh-cc-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHH
Confidence 46999999999999999888755544422111 12 34555666655555678889999999999999999999999888
Q ss_pred HHHHHHHHHHHHh
Q psy11289 133 DQAFHELVRIVLL 145 (159)
Q Consensus 133 ~~~~~~l~~~~~~ 145 (159)
..+=+.+++.+.-
T Consensus 142 ~~lAqRLL~~lqi 154 (176)
T PF11111_consen 142 TSLAQRLLRMLQI 154 (176)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877653
No 350
>KOG1954|consensus
Probab=96.22 E-value=0.017 Score=43.87 Aligned_cols=67 Identities=22% Similarity=0.273 Sum_probs=46.7
Q ss_pred EEEEEeCCCccc-----------chHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q psy11289 31 RLDILDTAGQEE-----------FSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADL 99 (159)
Q Consensus 31 ~~~l~D~~g~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 99 (159)
++.+.||||.-. |....+.|...+|.|+++||+...+--++..+.+..+... .=-+-||.||.|.
T Consensus 148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----EdkiRVVLNKADq 223 (532)
T KOG1954|consen 148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----EDKIRVVLNKADQ 223 (532)
T ss_pred heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----cceeEEEeccccc
Confidence 367799998522 3445677889999999999998765544544444554443 2356788999997
Q ss_pred CC
Q psy11289 100 DH 101 (159)
Q Consensus 100 ~~ 101 (159)
.+
T Consensus 224 Vd 225 (532)
T KOG1954|consen 224 VD 225 (532)
T ss_pred cC
Confidence 55
No 351
>KOG0410|consensus
Probab=96.07 E-value=0.015 Score=43.36 Aligned_cols=108 Identities=16% Similarity=0.110 Sum_probs=68.5
Q ss_pred CCeeEEEEEEeCCCcccc--hHHHHHH------hhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCc----EEEE
Q psy11289 26 DDIPARLDILDTAGQEEF--SAMREQY------MRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFP----MLMV 93 (159)
Q Consensus 26 ~~~~~~~~l~D~~g~~~~--~~~~~~~------~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p----~ivv 93 (159)
+|..+.+ .||.|.-.- ..+...| ...+|.++-|.|+++|+.-.+....+.-+.+.. -++.| ++=|
T Consensus 224 sg~~vll--tDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~ig-v~~~pkl~~mieV 300 (410)
T KOG0410|consen 224 SGNFVLL--TDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIG-VPSEPKLQNMIEV 300 (410)
T ss_pred CCcEEEE--eechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcC-CCcHHHHhHHHhh
Confidence 5666555 999987432 1233333 467899999999999988777665555554432 22233 3345
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 94 GNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 94 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
=||.|..+... +. +..+ .+.+||++|+|++++.+.+-..+...
T Consensus 301 dnkiD~e~~~~-e~-------E~n~--~v~isaltgdgl~el~~a~~~kv~~~ 343 (410)
T KOG0410|consen 301 DNKIDYEEDEV-EE-------EKNL--DVGISALTGDGLEELLKAEETKVASE 343 (410)
T ss_pred ccccccccccC-cc-------ccCC--ccccccccCccHHHHHHHHHHHhhhh
Confidence 68888643221 11 1122 68899999999999988877665543
No 352
>KOG1486|consensus
Probab=95.94 E-value=0.17 Score=36.71 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=40.6
Q ss_pred cccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHH-------HHHhhcCCEEEEEEECCChhhH
Q psy11289 8 VTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMR-------EQYMRSGEGFLLVFSVTDRNSF 69 (159)
Q Consensus 8 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~~~~~~~~~ii~v~d~~~~~s~ 69 (159)
...|.-|+-.+....+..+|-.+ |+.|.||...-.+.. -...+.||.+++|.|++..+.-
T Consensus 89 aA~yeFTTLtcIpGvi~y~ga~I--QllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e~q 155 (364)
T KOG1486|consen 89 AASYEFTTLTCIPGVIHYNGANI--QLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSEDQ 155 (364)
T ss_pred hhceeeeEEEeecceEEecCceE--EEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcchhH
Confidence 34555666666666777788775 559999875433322 2235789999999999876543
No 353
>KOG1143|consensus
Probab=95.90 E-value=0.07 Score=40.74 Aligned_cols=100 Identities=17% Similarity=0.197 Sum_probs=60.3
Q ss_pred EEEEEeCCCcccchHHHHHHh--hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCC---
Q psy11289 31 RLDILDTAGQEEFSAMREQYM--RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQV--- 105 (159)
Q Consensus 31 ~~~l~D~~g~~~~~~~~~~~~--~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~--- 105 (159)
.+.+.|.+|+.+|....-.-+ -..|..++|+++...-..-. .+-+..+.. .++|+.++.+|+|+.....+
T Consensus 250 lvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A----L~iPfFvlvtK~Dl~~~~~~~~t 324 (591)
T KOG1143|consen 250 LVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA----LNIPFFVLVTKMDLVDRQGLKKT 324 (591)
T ss_pred eEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH----hCCCeEEEEEeeccccchhHHHH
Confidence 356699999999865322222 14588888888876433211 111122222 57899999999999543211
Q ss_pred ---------------------CHHHHHHHHHHcC----CcEEEeCCCCCCCHHHH
Q psy11289 106 ---------------------SSMDAQNVARQLR----IPYIECSAKVRINVDQA 135 (159)
Q Consensus 106 ---------------------~~~~~~~~~~~~~----~~~~~~sa~~~~~i~~~ 135 (159)
+.+++...+++.- +|++-+|+.+|.|+.-+
T Consensus 325 v~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 325 VKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred HHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 2233333333321 57889999999998654
No 354
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=95.73 E-value=0.25 Score=37.87 Aligned_cols=106 Identities=15% Similarity=0.096 Sum_probs=51.4
Q ss_pred EEEEeCCCcccchHHHHHH-----hhcCCEEEEEEECCChhhHHHHHHHH-HHHHhhcCCCCCcEEEEEeCCCC--C---
Q psy11289 32 LDILDTAGQEEFSAMREQY-----MRSGEGFLLVFSVTDRNSFEEIYKFH-RQILRVKDRDEFPMLMVGNKADL--D--- 100 (159)
Q Consensus 32 ~~l~D~~g~~~~~~~~~~~-----~~~~~~ii~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~~p~ivv~nK~D~--~--- 100 (159)
+.+||.||..........| +...|.+|++.+-. |....-++ ..+.+ .++|+.+|-+|.|. .
T Consensus 88 v~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~r----f~~ndv~La~~i~~----~gK~fyfVRTKvD~Dl~~~~ 159 (376)
T PF05049_consen 88 VTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSER----FTENDVQLAKEIQR----MGKKFYFVRTKVDSDLYNER 159 (376)
T ss_dssp EEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESSS------HHHHHHHHHHHH----TT-EEEEEE--HHHHHHHHH
T ss_pred CeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCCC----CchhhHHHHHHHHH----cCCcEEEEEecccccHhhhh
Confidence 4559999975433333444 45679888877532 33322222 33333 57899999999995 1
Q ss_pred --CcCCCCHH----HHHHHHHH----cCC---cEEEeCCCCC--CCHHHHHHHHHHHHHh
Q psy11289 101 --HQRQVSSM----DAQNVARQ----LRI---PYIECSAKVR--INVDQAFHELVRIVLL 145 (159)
Q Consensus 101 --~~~~~~~~----~~~~~~~~----~~~---~~~~~sa~~~--~~i~~~~~~l~~~~~~ 145 (159)
.++..+.+ +.++.+.+ .|+ ++|-+|+.+- .++..+.+.+.+.+..
T Consensus 160 ~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~ 219 (376)
T PF05049_consen 160 RRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPA 219 (376)
T ss_dssp CC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-G
T ss_pred ccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHH
Confidence 12233322 22333322 244 4899999864 4677777777765543
No 355
>KOG0469|consensus
Probab=95.58 E-value=0.023 Score=44.84 Aligned_cols=69 Identities=20% Similarity=0.288 Sum_probs=49.1
Q ss_pred CCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q psy11289 26 DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADL 99 (159)
Q Consensus 26 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 99 (159)
++..+.++++|.||+-.|.+.....++-.||.++|+|..+.--.+.-.-+.+.+.+ .+-.+++.||.|.
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E-----RIkPvlv~NK~DR 162 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE-----RIKPVLVMNKMDR 162 (842)
T ss_pred CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh-----hccceEEeehhhH
Confidence 34567889999999999999888889999999999999775333221122223322 3344667999995
No 356
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.56 E-value=0.33 Score=35.58 Aligned_cols=93 Identities=18% Similarity=0.179 Sum_probs=56.3
Q ss_pred EEEEEEeCCCcccchHHH----HHH---hh-----cCCEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q psy11289 30 ARLDILDTAGQEEFSAMR----EQY---MR-----SGEGFLLVFSVTDR-NSFEEIYKFHRQILRVKDRDEFPMLMVGNK 96 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~----~~~---~~-----~~~~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK 96 (159)
+.+-|.||+|........ ..+ .. .+|.+++|.|++-. +.+..+ ..+.+.. .+.-+|.||
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~----~~~g~IlTK 226 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV----GLTGIILTK 226 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC----CCCEEEEEc
Confidence 456679999986543221 111 11 37999999999753 333333 2222221 135678999
Q ss_pred CCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHH
Q psy11289 97 ADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAF 136 (159)
Q Consensus 97 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 136 (159)
.|..... -.+...+...++|+..++ +|++++++-
T Consensus 227 lDe~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 227 LDGTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred cCCCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 9964322 344566667789988888 777776653
No 357
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=95.35 E-value=0.3 Score=35.65 Aligned_cols=80 Identities=18% Similarity=0.186 Sum_probs=54.5
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHH
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMD 109 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 109 (159)
..+-+.|+|---. -..-..+.++|.+|+|-.++ +.++.++++.++.... -++|..+|.||.+... .+
T Consensus 164 ~~~~IIDsaaG~g--CpVi~sl~~aD~ai~VTEPT-p~glhD~kr~~el~~~----f~ip~~iViNr~~~g~------s~ 230 (284)
T COG1149 164 ADLLIIDSAAGTG--CPVIASLKGADLAILVTEPT-PFGLHDLKRALELVEH----FGIPTGIVINRYNLGD------SE 230 (284)
T ss_pred cceeEEecCCCCC--ChHHHhhccCCEEEEEecCC-ccchhHHHHHHHHHHH----hCCceEEEEecCCCCc------hH
Confidence 3556677763221 12345578999999988776 5567777665555444 5789999999996432 27
Q ss_pred HHHHHHHcCCcEE
Q psy11289 110 AQNVARQLRIPYI 122 (159)
Q Consensus 110 ~~~~~~~~~~~~~ 122 (159)
..+++.+.|++++
T Consensus 231 ie~~~~e~gi~il 243 (284)
T COG1149 231 IEEYCEEEGIPIL 243 (284)
T ss_pred HHHHHHHcCCCee
Confidence 7889999888754
No 358
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.13 E-value=0.27 Score=32.04 Aligned_cols=65 Identities=15% Similarity=0.210 Sum_probs=44.0
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADL 99 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 99 (159)
+.+.++|+|+.. .......+..+|.++++.+.+ +.++..+...++.+.+.. ...++.+|.|+.+.
T Consensus 45 yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 456779999753 333456788999999999875 555655555555554432 34567789999974
No 359
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.02 E-value=0.4 Score=35.97 Aligned_cols=92 Identities=20% Similarity=0.126 Sum_probs=55.7
Q ss_pred EEEEEEeCCCcccchHH----HHHHh--------hcCCEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q psy11289 30 ARLDILDTAGQEEFSAM----REQYM--------RSGEGFLLVFSVTDR-NSFEEIYKFHRQILRVKDRDEFPMLMVGNK 96 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~----~~~~~--------~~~~~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK 96 (159)
+.+.|.||+|....... ...+. ...+..++|.|++.. +++..+.. +.+.. .+.-+|.||
T Consensus 197 ~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~----f~~~~----~~~giIlTK 268 (318)
T PRK10416 197 IDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKA----FHEAV----GLTGIILTK 268 (318)
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHH----HHhhC----CCCEEEEEC
Confidence 45667999998653221 11111 246788999999853 33333322 21211 244678999
Q ss_pred CCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHH
Q psy11289 97 ADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQA 135 (159)
Q Consensus 97 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 135 (159)
.|..... -.+...+...++|+..++ +|++++++
T Consensus 269 lD~t~~~----G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 269 LDGTAKG----GVVFAIADELGIPIKFIG--VGEGIDDL 301 (318)
T ss_pred CCCCCCc----cHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence 9954322 244566677799988888 77888766
No 360
>KOG0459|consensus
Probab=94.89 E-value=0.068 Score=41.08 Aligned_cols=104 Identities=21% Similarity=0.199 Sum_probs=61.4
Q ss_pred EEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChh---hHHHHH--HHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCC
Q psy11289 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRN---SFEEIY--KFHRQILRVKDRDEFPMLMVGNKADLDHQRQV 105 (159)
Q Consensus 31 ~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~~~~~--~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 105 (159)
++.+-|.||+..|-+..-.-...||.-++|.++...+ .|+.=. +-...+.+.. .-...|++.||+|-+.. .+
T Consensus 158 ~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~--gv~~lVv~vNKMddPtv-nW 234 (501)
T KOG0459|consen 158 RFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA--GVKHLIVLINKMDDPTV-NW 234 (501)
T ss_pred eEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh--ccceEEEEEEeccCCcc-Cc
Confidence 3455999999988664444456788888888774322 232211 1111122211 23578999999996532 12
Q ss_pred C---HH----HHHHHHHHcC------CcEEEeCCCCCCCHHHHHH
Q psy11289 106 S---SM----DAQNVARQLR------IPYIECSAKVRINVDQAFH 137 (159)
Q Consensus 106 ~---~~----~~~~~~~~~~------~~~~~~sa~~~~~i~~~~~ 137 (159)
+ .+ ....|...+| ..+++||..+|.++.+..+
T Consensus 235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 2 12 2233444444 3489999999999887654
No 361
>PHA02518 ParA-like protein; Provisional
Probab=94.76 E-value=0.6 Score=32.31 Aligned_cols=67 Identities=15% Similarity=0.168 Sum_probs=40.8
Q ss_pred eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCC
Q psy11289 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR--NSFEEIYKFHRQILRVKDRDEFP-MLMVGNKADL 99 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~ 99 (159)
.+.+.|+|+||.. .......+..+|.+|++..++.. .+...+.+++..+.... ...| ..++.|+.+.
T Consensus 76 ~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 76 GYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVT--DGLPKFAFIISRAIK 145 (211)
T ss_pred cCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhC--CCCceEEEEEeccCC
Confidence 3556779999874 34566777899999999887632 23344444444433322 2344 3456677653
No 362
>PRK14974 cell division protein FtsY; Provisional
Probab=94.53 E-value=0.61 Score=35.32 Aligned_cols=92 Identities=17% Similarity=0.175 Sum_probs=55.4
Q ss_pred EEEEEeCCCcccch-HHHH---HH--hhcCCEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcC
Q psy11289 31 RLDILDTAGQEEFS-AMRE---QY--MRSGEGFLLVFSVTDRNS-FEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQR 103 (159)
Q Consensus 31 ~~~l~D~~g~~~~~-~~~~---~~--~~~~~~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 103 (159)
.+.|.||+|..... .+.. .+ ..+.|.+++|.|++.... .+.+ ..+.+.. + +--++.||.|....-
T Consensus 224 DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a----~~f~~~~---~-~~giIlTKlD~~~~~ 295 (336)
T PRK14974 224 DVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA----REFNEAV---G-IDGVILTKVDADAKG 295 (336)
T ss_pred CEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH----HHHHhcC---C-CCEEEEeeecCCCCc
Confidence 46679999986532 2222 22 235789999999876432 2222 2222211 1 346779999975322
Q ss_pred CCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHH
Q psy11289 104 QVSSMDAQNVARQLRIPYIECSAKVRINVDQAF 136 (159)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 136 (159)
. .+...+...+.|+..++ +|++++++.
T Consensus 296 G----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 296 G----AALSIAYVIGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred c----HHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence 2 33455556789988887 788887764
No 363
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.50 E-value=0.28 Score=35.15 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=47.4
Q ss_pred EEEEeCC-CcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC-CcEEEEEeCCCCCCcCCCCHHH
Q psy11289 32 LDILDTA-GQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDE-FPMLMVGNKADLDHQRQVSSMD 109 (159)
Q Consensus 32 ~~l~D~~-g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-~p~ivv~nK~D~~~~~~~~~~~ 109 (159)
+-+.||- |.+.|. +...+++|.+|+|.|++. .|+..+.+. .++.+. .+ .++.+|+||.|-. ...
T Consensus 136 ~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri-~~L~~e---lg~k~i~~V~NKv~e~------e~~ 201 (255)
T COG3640 136 VVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERI-KELAEE---LGIKRIFVVLNKVDEE------EEL 201 (255)
T ss_pred EEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHH-HHHHHH---hCCceEEEEEeeccch------hHH
Confidence 3347764 555543 466789999999999864 455554442 333333 34 6899999999942 334
Q ss_pred HHHHHHHcCCc
Q psy11289 110 AQNVARQLRIP 120 (159)
Q Consensus 110 ~~~~~~~~~~~ 120 (159)
....+...+.+
T Consensus 202 ~~~~~~~~~~~ 212 (255)
T COG3640 202 LRELAEELGLE 212 (255)
T ss_pred HHhhhhccCCe
Confidence 55666666654
No 364
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=94.44 E-value=1.2 Score=36.86 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=44.4
Q ss_pred EEECCeeEEEEEEeCCCcccch-------HH---HHHHhh--cCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCC-CCc
Q psy11289 23 CVIDDIPARLDILDTAGQEEFS-------AM---REQYMR--SGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRD-EFP 89 (159)
Q Consensus 23 ~~~~~~~~~~~l~D~~g~~~~~-------~~---~~~~~~--~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~p 89 (159)
...+|..+ .++||||..... .. ...++. ++|++|+|..++.......-..++..+....+.. -..
T Consensus 161 ~~idG~~L--~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~ 238 (763)
T TIGR00993 161 GLVQGVKI--RVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFN 238 (763)
T ss_pred EEECCceE--EEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcC
Confidence 34566654 559999986431 11 122333 5899999988763322112224455555544311 236
Q ss_pred EEEEEeCCCCCC
Q psy11289 90 MLMVGNKADLDH 101 (159)
Q Consensus 90 ~ivv~nK~D~~~ 101 (159)
+|||.|+.|..+
T Consensus 239 tIVVFThgD~lp 250 (763)
T TIGR00993 239 AIVTLTHAASAP 250 (763)
T ss_pred EEEEEeCCccCC
Confidence 888899998764
No 365
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=94.39 E-value=0.33 Score=35.49 Aligned_cols=91 Identities=21% Similarity=0.210 Sum_probs=49.6
Q ss_pred cCCEEEEEEECCCh-----h--hHHHH----HHHHHHHHhhcCCCCCcEEEEEeCCCCCCc-----CCCCHHHHHHHHHH
Q psy11289 53 SGEGFLLVFSVTDR-----N--SFEEI----YKFHRQILRVKDRDEFPMLMVGNKADLDHQ-----RQVSSMDAQNVARQ 116 (159)
Q Consensus 53 ~~~~ii~v~d~~~~-----~--s~~~~----~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~ 116 (159)
..+|||+++|+.+- + .+... ..-+.++.+..+ ...|+.+|.||+|+... ..++.+ ...+-
T Consensus 25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg-~~~PVYvv~Tk~D~l~GF~ef~~~L~~~---~r~q~ 100 (266)
T PF14331_consen 25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLG-VRLPVYVVFTKCDLLPGFDEFFSDLSEE---EREQV 100 (266)
T ss_pred CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhC-CCCCeEeeeECCCcccCHHHHHHhCCHH---HHhCC
Confidence 46999999998642 1 12222 223334444333 47899999999998542 112221 22233
Q ss_pred cCCcEEEeCCCCCCC---HHHHHHHHHHHHHhcc
Q psy11289 117 LRIPYIECSAKVRIN---VDQAFHELVRIVLLHT 147 (159)
Q Consensus 117 ~~~~~~~~sa~~~~~---i~~~~~~l~~~~~~~~ 147 (159)
+|+.+-.-....+.. +++.|+.+...+....
T Consensus 101 lG~t~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 134 (266)
T PF14331_consen 101 LGFTFPYDEDADGDAWAWFDEEFDELVARLNARV 134 (266)
T ss_pred cccccCCccccccchHHHHHHHHHHHHHHHHHHH
Confidence 454432222333344 7777777776665443
No 366
>KOG4273|consensus
Probab=94.23 E-value=0.18 Score=36.44 Aligned_cols=44 Identities=23% Similarity=0.566 Sum_probs=31.0
Q ss_pred hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCC
Q psy11289 52 RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPML-MVGNKADL 99 (159)
Q Consensus 52 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~ 99 (159)
...-+++++||.+....+..++.|+..- .....-++ -+|||.|.
T Consensus 77 ~pl~a~vmvfdlse~s~l~alqdwl~ht----dinsfdillcignkvdr 121 (418)
T KOG4273|consen 77 EPLQAFVMVFDLSEKSGLDALQDWLPHT----DINSFDILLCIGNKVDR 121 (418)
T ss_pred cceeeEEEEEeccchhhhHHHHhhcccc----ccccchhheeccccccc
Confidence 4557899999999999999999997532 11222333 35788885
No 367
>KOG0448|consensus
Probab=94.12 E-value=0.59 Score=38.42 Aligned_cols=91 Identities=16% Similarity=0.282 Sum_probs=53.3
Q ss_pred EEEEeCCCcccc---hHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHH
Q psy11289 32 LDILDTAGQEEF---SAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSM 108 (159)
Q Consensus 32 ~~l~D~~g~~~~---~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 108 (159)
+.+.|.||..-- .+-...+..++|++|+|..+.+.-+..+ ..++....+ ....+.++.||.|....++-..+
T Consensus 208 ivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~----~KpniFIlnnkwDasase~ec~e 282 (749)
T KOG0448|consen 208 IVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE----EKPNIFILNNKWDASASEPECKE 282 (749)
T ss_pred ceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc----cCCcEEEEechhhhhcccHHHHH
Confidence 567999998532 3345566789999999998877555433 233433333 23346667788898654433333
Q ss_pred HHHHHHHHcCC--------cEEEeCCC
Q psy11289 109 DAQNVARQLRI--------PYIECSAK 127 (159)
Q Consensus 109 ~~~~~~~~~~~--------~~~~~sa~ 127 (159)
....-..+++. .++.+||+
T Consensus 283 ~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 283 DVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred HHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 33222223321 27888854
No 368
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=94.06 E-value=1.3 Score=33.92 Aligned_cols=83 Identities=11% Similarity=0.217 Sum_probs=59.1
Q ss_pred eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHH
Q psy11289 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSM 108 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 108 (159)
.+-+.++|.| ..+......++..+|-+++|.+.+ -.++...+++++.+.+... ...+..++.||.+... ..+
T Consensus 217 ~~~~vV~Dlp--~~~~~~t~~vL~~Sd~iviv~e~s-l~slR~ak~lld~l~~~r~-~~~~p~lv~n~~~~~~--~~~-- 288 (366)
T COG4963 217 SFDFVVVDLP--NIWTDWTRQVLSGSDEIVIVAEPS-LASLRNAKELLDELKRLRP-NDPKPILVLNRVGVPK--RPE-- 288 (366)
T ss_pred cCCeEEEcCC--CccchHHHHHHhcCCeEEEEeccc-HHHHHHHHHHHHHHHHhCC-CCCCceEEeeecCCCC--CCC--
Confidence 4556779999 334556778889999999999874 6688888899888877754 4667888899998543 222
Q ss_pred HHHHHHHHcCCc
Q psy11289 109 DAQNVARQLRIP 120 (159)
Q Consensus 109 ~~~~~~~~~~~~ 120 (159)
..++...++++
T Consensus 289 -~~dl~~~~~i~ 299 (366)
T COG4963 289 -PSDLEEILGIE 299 (366)
T ss_pred -HHHHHHHhCCc
Confidence 34455555543
No 369
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=94.02 E-value=1.2 Score=29.87 Aligned_cols=84 Identities=12% Similarity=0.079 Sum_probs=50.9
Q ss_pred EEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHH
Q psy11289 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDA 110 (159)
Q Consensus 31 ~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 110 (159)
.+.++|+|+.... .....+..+|.++++.+.+. .++..+..+++.+... ......++.|+.+... ....+..
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~--~~~~~~~ 135 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDM--VEGGDMV 135 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCcccc--cchhhHH
Confidence 4667999976432 23445678999999987753 4555665655555442 2234668899998532 1122223
Q ss_pred HHHHHHcCCcEE
Q psy11289 111 QNVARQLRIPYI 122 (159)
Q Consensus 111 ~~~~~~~~~~~~ 122 (159)
..+.+.++.+++
T Consensus 136 ~~~~~~~~~~v~ 147 (179)
T cd02036 136 EDIEEILGVPLL 147 (179)
T ss_pred HHHHHHhCCCEE
Confidence 455566777754
No 370
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=93.88 E-value=0.18 Score=37.02 Aligned_cols=58 Identities=16% Similarity=0.236 Sum_probs=35.8
Q ss_pred ccccccccccceEEEEEEECCe---------------eEEEEEEeCCCcccch----HHHHHH---hhcCCEEEEEEECC
Q psy11289 7 FVTDYDPTIEDSYTKQCVIDDI---------------PARLDILDTAGQEEFS----AMREQY---MRSGEGFLLVFSVT 64 (159)
Q Consensus 7 f~~~~~pt~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~----~~~~~~---~~~~~~ii~v~d~~ 64 (159)
-+++|+.|+-+.....+.+.+. ...+++.|+||..+-. .+...+ ++.+|++++|+|..
T Consensus 24 ~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 24 EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 3556777665444444444432 2357889999975422 233333 56899999999873
No 371
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=93.58 E-value=1.1 Score=27.80 Aligned_cols=63 Identities=11% Similarity=0.062 Sum_probs=41.2
Q ss_pred EEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q psy11289 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNK 96 (159)
Q Consensus 31 ~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK 96 (159)
.+.+.|+|+.... .....+..+|.++++.+. ++.++..+.++++.+.+........+.+|+|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQ-DLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecC-ChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 4567999986532 334567889999998876 45667777777766665432113456677765
No 372
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=93.50 E-value=0.85 Score=36.68 Aligned_cols=70 Identities=11% Similarity=0.098 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCC--CCCCHHHHHHHHHHHHH
Q psy11289 69 FEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAK--VRINVDQAFHELVRIVL 144 (159)
Q Consensus 69 ~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~--~~~~i~~~~~~l~~~~~ 144 (159)
+.++.+-++.+.+ -++|++|+.||+|...+.+ .+..+++|++.|+++..+..- =|.|--++-+.+++.+.
T Consensus 358 l~NL~RHIenvr~----FGvPvVVAINKFd~DTe~E--i~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~ 429 (557)
T PRK13505 358 FANLERHIENIRK----FGVPVVVAINKFVTDTDAE--IAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIE 429 (557)
T ss_pred HHHHHHHHHHHHH----cCCCEEEEEeCCCCCCHHH--HHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHh
Confidence 4555555555544 4789999999999754322 456789999999998755543 46788888888887775
No 373
>KOG2484|consensus
Probab=93.50 E-value=0.22 Score=38.26 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=43.7
Q ss_pred ccchHHHHHHhhcCCEEEEEEECCChhhH--HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHH
Q psy11289 41 EEFSAMREQYMRSGEGFLLVFSVTDRNSF--EEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQ 116 (159)
Q Consensus 41 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 116 (159)
..|.......++.+|+||-|.|+.||.+= .++.+|+ .+.. .++-.|+|.||.|+.. .+....|...
T Consensus 134 kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V---~~~~--gnKkLILVLNK~DLVP-----rEv~e~Wl~Y 201 (435)
T KOG2484|consen 134 KAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAV---LQAH--GNKKLILVLNKIDLVP-----REVVEKWLVY 201 (435)
T ss_pred HHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHH---Hhcc--CCceEEEEeehhccCC-----HHHHHHHHHH
Confidence 34555555667889999999999998763 3344443 2222 3478999999999864 3444445443
No 374
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=93.25 E-value=1.4 Score=30.81 Aligned_cols=90 Identities=11% Similarity=0.052 Sum_probs=53.0
Q ss_pred eEEEEEEeCCCcccchHHHH-HHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCcCCCC
Q psy11289 29 PARLDILDTAGQEEFSAMRE-QYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFP-MLMVGNKADLDHQRQVS 106 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~-~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~~ 106 (159)
.+.+.+.|++|..-...... ...+-+|.++++... +..++..+.+.++.+.......+.+ ..++.|+.+.. ..
T Consensus 116 ~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p-~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~----~~ 190 (212)
T cd02117 116 DLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSG-EFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD----RE 190 (212)
T ss_pred CCCEEEEecCCCceecccccccccccCcEEEEEecc-cHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc----cH
Confidence 45667799976543222111 112468999999976 4556656655555555543222333 44889999843 22
Q ss_pred HHHHHHHHHHcCCcEEE
Q psy11289 107 SMDAQNVARQLRIPYIE 123 (159)
Q Consensus 107 ~~~~~~~~~~~~~~~~~ 123 (159)
.+...++.+.++.+++.
T Consensus 191 ~~~~~~~~~~~~~~vl~ 207 (212)
T cd02117 191 TELIDAFAERLGTQVIH 207 (212)
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 44556777777876544
No 375
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=92.51 E-value=2 Score=31.16 Aligned_cols=85 Identities=9% Similarity=0.071 Sum_probs=49.9
Q ss_pred eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCCCCcCCCCH
Q psy11289 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPML-MVGNKADLDHQRQVSS 107 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~~~~~~~~ 107 (159)
.+.+.|+||+|...... ....+.-+|.+|++... +..++..+.+.+..+.......+.++. ++.|+.+. .
T Consensus 117 ~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~-~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-------~ 187 (270)
T PRK13185 117 DYDVILFDVLGDVVCGG-FAAPLQYADYALIVTAN-DFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-------T 187 (270)
T ss_pred cCCEEEEecCCCcccCc-ccchhhhCcEEEEEecC-chhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh-------H
Confidence 35667799987642221 22335678999998865 556666666555554433222455644 77898762 2
Q ss_pred HHHHHHHHHcCCcEE
Q psy11289 108 MDAQNVARQLRIPYI 122 (159)
Q Consensus 108 ~~~~~~~~~~~~~~~ 122 (159)
+...++.+.++.+++
T Consensus 188 ~~~~~~~~~~g~~vl 202 (270)
T PRK13185 188 DLIDKFNEAVGLKVL 202 (270)
T ss_pred HHHHHHHHHcCCCEE
Confidence 344566666665543
No 376
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=92.49 E-value=2.8 Score=29.76 Aligned_cols=66 Identities=11% Similarity=0.112 Sum_probs=41.7
Q ss_pred EEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 31 ~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
.+-++|+|+.. .......+..+|.++++...+ ..++..+.+.+..+.+.. ....+.-++.|+.|..
T Consensus 116 D~viiD~pp~~--~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~~-~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 116 DWVLIDVPRGP--SPITRQALAAADLVLVVVNAD-AACYATLHQQALALFAGS-GPRIGPHFLINQFDPA 181 (246)
T ss_pred CEEEEECCCCc--hHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhcc-cccccceEEeeccCcc
Confidence 45669999853 345567778899999999874 455555553333333311 1234567889998853
No 377
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=92.44 E-value=2.4 Score=28.83 Aligned_cols=86 Identities=15% Similarity=0.157 Sum_probs=57.6
Q ss_pred hhcCCEEEEEEECCC-------hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEE
Q psy11289 51 MRSGEGFLLVFSVTD-------RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIE 123 (159)
Q Consensus 51 ~~~~~~ii~v~d~~~-------~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (159)
++....=.+++|.++ .+-..++..|+.++.+.. ...-+++|-|-.-..+ .....++..+++.+|++++.
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~--~~~~v~IvSNsaGs~~--d~~~~~a~~~~~~lgIpvl~ 111 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQF--GKDRVLIVSNSAGSSD--DPDGERAEALEKALGIPVLR 111 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHC--CCCeEEEEECCCCccc--CccHHHHHHHHHhhCCcEEE
Confidence 444455556667766 122456778888887753 2224788887763222 33467888999999999999
Q ss_pred eCCCCCCCHHHHHHHHH
Q psy11289 124 CSAKVRINVDQAFHELV 140 (159)
Q Consensus 124 ~sa~~~~~i~~~~~~l~ 140 (159)
-+++...+..++...+-
T Consensus 112 h~~kKP~~~~~i~~~~~ 128 (168)
T PF09419_consen 112 HRAKKPGCFREILKYFK 128 (168)
T ss_pred eCCCCCccHHHHHHHHh
Confidence 99988877777666553
No 378
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=92.18 E-value=0.58 Score=41.30 Aligned_cols=66 Identities=26% Similarity=0.336 Sum_probs=43.5
Q ss_pred EEeCCCcc--------cchHHHHHHh---------hcCCEEEEEEECCCh-----hhH----HHHHHHHHHHHhhcCCCC
Q psy11289 34 ILDTAGQE--------EFSAMREQYM---------RSGEGFLLVFSVTDR-----NSF----EEIYKFHRQILRVKDRDE 87 (159)
Q Consensus 34 l~D~~g~~--------~~~~~~~~~~---------~~~~~ii~v~d~~~~-----~s~----~~~~~~~~~i~~~~~~~~ 87 (159)
++||+|.. .....|..++ +..+|||+++|+.+- +.. ..+...+.++.+..+ ..
T Consensus 165 liDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg-~~ 243 (1169)
T TIGR03348 165 LIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG-AR 243 (1169)
T ss_pred EEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-CC
Confidence 58999842 1233455553 357999999998663 211 233445555555544 47
Q ss_pred CcEEEEEeCCCCC
Q psy11289 88 FPMLMVGNKADLD 100 (159)
Q Consensus 88 ~p~ivv~nK~D~~ 100 (159)
.|+.++.+|+|+.
T Consensus 244 ~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 244 FPVYLVLTKADLL 256 (1169)
T ss_pred CCEEEEEecchhh
Confidence 9999999999975
No 379
>KOG0447|consensus
Probab=91.73 E-value=2.6 Score=34.21 Aligned_cols=81 Identities=16% Similarity=0.234 Sum_probs=52.9
Q ss_pred EEEEEeCCCccc-------------chHHHHHHhhcCCEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCCcEEEEEeC
Q psy11289 31 RLDILDTAGQEE-------------FSAMREQYMRSGEGFLLVFSVTDRNSFEE-IYKFHRQILRVKDRDEFPMLMVGNK 96 (159)
Q Consensus 31 ~~~l~D~~g~~~-------------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~p~ivv~nK 96 (159)
+..+.|.||... ..++...|+.+.++||+|.--.+-++-.. +..+. ..++..+.-.|+|.+|
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLV----sq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLV----SQMDPHGRRTIFVLTK 488 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHH----HhcCCCCCeeEEEEee
Confidence 566789998532 23567889999999999984332222211 22222 3334456789999999
Q ss_pred CCCCCcCCCCHHHHHHHHH
Q psy11289 97 ADLDHQRQVSSMDAQNVAR 115 (159)
Q Consensus 97 ~D~~~~~~~~~~~~~~~~~ 115 (159)
.|+.+..-.++.-++....
T Consensus 489 VDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred cchhhhccCCHHHHHHHHh
Confidence 9998876677766666554
No 380
>KOG3929|consensus
Probab=91.73 E-value=0.28 Score=35.72 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=33.2
Q ss_pred ccccccceEEEEEEECC--eeEEEEEEeCCCcccchHHHHHHhh----cCCEEEEEEECCChhh
Q psy11289 11 YDPTIEDSYTKQCVIDD--IPARLDILDTAGQEEFSAMREQYMR----SGEGFLLVFSVTDRNS 68 (159)
Q Consensus 11 ~~pt~~~~~~~~~~~~~--~~~~~~l~D~~g~~~~~~~~~~~~~----~~~~ii~v~d~~~~~s 68 (159)
..||.+-.|+.-....| .+=..++|+.+|......+.+.-+. ..-.+|++.|+++++.
T Consensus 71 ~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~~slIL~LDls~p~~ 134 (363)
T KOG3929|consen 71 KPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRTFSLILVLDLSKPND 134 (363)
T ss_pred CCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhhhhheeeeecCChHH
Confidence 34454444433323322 3334577999998765554443332 1246788999999864
No 381
>KOG2423|consensus
Probab=91.43 E-value=1.3 Score=34.46 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=48.4
Q ss_pred HHHHHh---hcCCEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCc
Q psy11289 46 MREQYM---RSGEGFLLVFSVTDRNS--FEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIP 120 (159)
Q Consensus 46 ~~~~~~---~~~~~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 120 (159)
.|..++ ..+|++|-|.|+.||.. -.++..++ .+ ..+.+++|.|.||+||.. ..++..=...+++++-.-
T Consensus 203 IW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~yl---kk--e~phKHli~vLNKvDLVP-twvt~~Wv~~lSkeyPTi 276 (572)
T KOG2423|consen 203 IWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYL---KK--EKPHKHLIYVLNKVDLVP-TWVTAKWVRHLSKEYPTI 276 (572)
T ss_pred HHHHHHHhhcccceeEEeeeccCCcccccHHHHHHH---hh--cCCcceeEEEeecccccc-HHHHHHHHHHHhhhCcce
Confidence 454443 57899999999999853 23343332 22 236789999999999864 222233334555554433
Q ss_pred EEEeCCCCCCCH
Q psy11289 121 YIECSAKVRINV 132 (159)
Q Consensus 121 ~~~~sa~~~~~i 132 (159)
-|..|--+..|-
T Consensus 277 AfHAsi~nsfGK 288 (572)
T KOG2423|consen 277 AFHASINNSFGK 288 (572)
T ss_pred eeehhhcCccch
Confidence 455664444443
No 382
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=91.19 E-value=1.6 Score=34.19 Aligned_cols=82 Identities=11% Similarity=0.216 Sum_probs=54.7
Q ss_pred CCEEEEEEECC--C--hhhHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCC-
Q psy11289 54 GEGFLLVFSVT--D--RNSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAK- 127 (159)
Q Consensus 54 ~~~ii~v~d~~--~--~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~- 127 (159)
.-|+++.-|.+ + ++++..+. +.+.++.+ -++|++++.|-.+-. ..-+.+.+.++.++++++++.+++.
T Consensus 146 TIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~----igKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~ 219 (492)
T PF09547_consen 146 TIGIVVTTDGSITDIPRENYVEAEERVIEELKE----IGKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQ 219 (492)
T ss_pred ceeEEEecCCCccCCChHHHHHHHHHHHHHHHH----hCCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHH
Confidence 35667766664 2 45666665 55666655 568999999988733 2223455667778889998887775
Q ss_pred -CCCCHHHHHHHHHH
Q psy11289 128 -VRINVDQAFHELVR 141 (159)
Q Consensus 128 -~~~~i~~~~~~l~~ 141 (159)
+...|..+++.++.
T Consensus 220 l~~~DI~~Il~~vLy 234 (492)
T PF09547_consen 220 LREEDITRILEEVLY 234 (492)
T ss_pred cCHHHHHHHHHHHHh
Confidence 45677777777664
No 383
>KOG2486|consensus
Probab=91.03 E-value=0.64 Score=34.24 Aligned_cols=103 Identities=14% Similarity=0.229 Sum_probs=56.9
Q ss_pred EEEEeCCCc----------ccchHHHHHHhhcCC---EEEEEEECCChhh-HH-HHHHHHHHHHhhcCCCCCcEEEEEeC
Q psy11289 32 LDILDTAGQ----------EEFSAMREQYMRSGE---GFLLVFSVTDRNS-FE-EIYKFHRQILRVKDRDEFPMLMVGNK 96 (159)
Q Consensus 32 ~~l~D~~g~----------~~~~~~~~~~~~~~~---~ii~v~d~~~~~s-~~-~~~~~~~~i~~~~~~~~~p~ivv~nK 96 (159)
+.+.|.||- ..+..+...|+.+.+ -+.++.|++.+-. -+ ....|+ +..++|..+|.||
T Consensus 185 ~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~-------ge~~VP~t~vfTK 257 (320)
T KOG2486|consen 185 WYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWL-------GENNVPMTSVFTK 257 (320)
T ss_pred EEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHH-------hhcCCCeEEeeeh
Confidence 344899992 234556677764433 3444455544311 11 112333 3368999999999
Q ss_pred CCCCCcCC----CCHHHHHHHHHH-------cCCcEEEeCCCCCCCHHHHHHHHHH
Q psy11289 97 ADLDHQRQ----VSSMDAQNVARQ-------LRIPYIECSAKVRINVDQAFHELVR 141 (159)
Q Consensus 97 ~D~~~~~~----~~~~~~~~~~~~-------~~~~~~~~sa~~~~~i~~~~~~l~~ 141 (159)
+|...... -+...+...... ...|++.+|+.++.|++.++-.+..
T Consensus 258 ~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 258 CDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred hhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence 99742110 001111111111 1256888999999999998765543
No 384
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=90.92 E-value=4.4 Score=28.92 Aligned_cols=64 Identities=8% Similarity=-0.021 Sum_probs=43.0
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADL 99 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 99 (159)
+.+.|+|+|+.... .....+..+|.++++...+ ..++..+.+.+..+.... ..++.++.|+.+.
T Consensus 112 ~D~viiD~p~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~iviN~~~~ 175 (261)
T TIGR01968 112 FDYVIIDCPAGIES--GFRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAKG---IEKIHLIVNRLRP 175 (261)
T ss_pred CCEEEEeCCCCcCH--HHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHcC---CCceEEEEeCcCc
Confidence 55677999976432 2344567889999988774 666777766666665532 2356778898874
No 385
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=90.85 E-value=4 Score=29.57 Aligned_cols=83 Identities=11% Similarity=0.114 Sum_probs=46.6
Q ss_pred eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCCCCcCCCCH
Q psy11289 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPML-MVGNKADLDHQRQVSS 107 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~~~~~~~~ 107 (159)
.+.+.|.||+|...... ....+..+|.+|++... +..++..+.+.+..+.......+.++. +|.|+.+..
T Consensus 115 ~yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p-~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~~------- 185 (267)
T cd02032 115 EYDVILFDVLGDVVCGG-FAAPLNYADYALIVTDN-DFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDKT------- 185 (267)
T ss_pred cCCEEEEeCCCCccccc-chhhhhhcCEEEEEecC-CcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCHH-------
Confidence 35567799987643221 22336789999998876 444555555444444332222445543 678998831
Q ss_pred HHHHHHHHHcCCc
Q psy11289 108 MDAQNVARQLRIP 120 (159)
Q Consensus 108 ~~~~~~~~~~~~~ 120 (159)
.....+.+.++.+
T Consensus 186 ~~i~~~~~~~~~~ 198 (267)
T cd02032 186 DLIDKFVEAVGMP 198 (267)
T ss_pred HHHHHHHHhCCCC
Confidence 2334555556654
No 386
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=90.84 E-value=1.3 Score=29.52 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=37.7
Q ss_pred eEEEEEEeCCCcccchHHHHHH--------hhcCCEEEEEEECCChhhH-HHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q psy11289 29 PARLDILDTAGQEEFSAMREQY--------MRSGEGFLLVFSVTDRNSF-EEIYKFHRQILRVKDRDEFPMLMVGNKADL 99 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~--------~~~~~~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 99 (159)
.....+.|++|...-......+ .-..++++++.|+.+.... .....+..++.. .-+++.||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~-------ad~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF-------ADRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH-------CCEEEEecccC
Confidence 3455679999997544444332 2247899999997653322 122233344433 22678999995
No 387
>CHL00175 minD septum-site determining protein; Validated
Probab=90.60 E-value=5.2 Score=29.19 Aligned_cols=65 Identities=5% Similarity=-0.000 Sum_probs=42.1
Q ss_pred eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q psy11289 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADL 99 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 99 (159)
.+.+.|+|+|+.-. ......+..+|.+++|.+.+ +.++..+...+..+.+.. . ...-++.|+.+.
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~~~-~--~~~~lvvN~~~~ 190 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEANG-I--YNVKLLVNRVRP 190 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHHcC-C--CceEEEEeccCh
Confidence 45677899997643 23344556789999988754 566767666666655532 1 235577898874
No 388
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=90.06 E-value=7.4 Score=30.63 Aligned_cols=86 Identities=19% Similarity=0.120 Sum_probs=49.1
Q ss_pred EEEEEEeCCCcccchH-HHHHH-----hhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcC
Q psy11289 30 ARLDILDTAGQEEFSA-MREQY-----MRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQR 103 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~-~~~~~-----~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 103 (159)
+.+.|.||+|...... +.... .-..+.+++|.|..... ++..+...+.... + ..=+|.||.|.....
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~-i~giIlTKlD~~~~~ 255 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---G-LTGVVLTKLDGDARG 255 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---C-CCEEEEeCccCcccc
Confidence 4466799999754322 11111 23578999999987542 3333333333222 1 234568999953322
Q ss_pred CCCHHHHHHHHHHcCCcEEEeCC
Q psy11289 104 QVSSMDAQNVARQLRIPYIECSA 126 (159)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~sa 126 (159)
-.+...+...++|+..++.
T Consensus 256 ----G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 256 ----GAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred ----cHHHHHHHHHCcCEEEEeC
Confidence 2356777778888666544
No 389
>PRK10818 cell division inhibitor MinD; Provisional
Probab=88.92 E-value=7.1 Score=28.27 Aligned_cols=68 Identities=4% Similarity=-0.023 Sum_probs=42.7
Q ss_pred eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcC-----CCCCcEEEEEeCCCC
Q psy11289 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD-----RDEFPMLMVGNKADL 99 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~~~p~ivv~nK~D~ 99 (159)
.+.+.+.|+|+.-... ....+..+|.++++.+++ ..++..+.+++..+..... ..+.+..++.|+.+.
T Consensus 113 ~yd~viiD~p~~~~~~--~~~~l~~ad~vivv~~p~-~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~ 185 (270)
T PRK10818 113 DFEFIVCDSPAGIETG--ALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (270)
T ss_pred CCCEEEEeCCCCccHH--HHHHHHhCCeEEEEcCCC-chHHHhHHHHHHHHHHhhccccccccccceEEEEeccCH
Confidence 4667779998765432 334467899999998775 5566666666666543211 112335677888874
No 390
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=88.68 E-value=1.6 Score=33.42 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=30.7
Q ss_pred CCCcEEEEEeCCCCCCcCCCC--HHHHHHHHHHcCCcEEEeCCC
Q psy11289 86 DEFPMLMVGNKADLDHQRQVS--SMDAQNVARQLRIPYIECSAK 127 (159)
Q Consensus 86 ~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~sa~ 127 (159)
..+|++.++|+.|...... . .+..+.++...+.+++.+||.
T Consensus 205 t~KP~lyvaN~~e~~~~~~-n~~~~~i~~~~~~~~~~vV~~sA~ 247 (372)
T COG0012 205 TAKPMLYVANVSEDDLANL-NEYVKRLKELAAKENAEVVPVSAA 247 (372)
T ss_pred hcCCeEEEEECCcccccch-hHHHHHHHHHhhhcCCcEEEeeHH
Confidence 4689999999999754332 2 345567777778889999986
No 391
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=88.28 E-value=6.8 Score=30.83 Aligned_cols=86 Identities=14% Similarity=0.072 Sum_probs=47.7
Q ss_pred eEEEEEEeCCCcccchH-HHHHH-----hhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCc
Q psy11289 29 PARLDILDTAGQEEFSA-MREQY-----MRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQ 102 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~-~~~~~-----~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~ 102 (159)
.+.+.|.||+|...... +.... ..+++-+++|.|++-...-.+. ...+.+. -.+.-+|.||.|....
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~---a~~F~~~----~~~~g~IlTKlD~~ar 254 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ---AKAFKDS----VDVGSVIITKLDGHAK 254 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH---HHHHHhc----cCCcEEEEECccCCCC
Confidence 35667799999865432 22211 2256889999998754322221 2223221 1256778999996432
Q ss_pred CCCCHHHHHHHHHHcCCcEEEeC
Q psy11289 103 RQVSSMDAQNVARQLRIPYIECS 125 (159)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~s 125 (159)
. -.+...+...++|+..++
T Consensus 255 g----G~aLs~~~~t~~PI~fig 273 (429)
T TIGR01425 255 G----GGALSAVAATKSPIIFIG 273 (429)
T ss_pred c----cHHhhhHHHHCCCeEEEc
Confidence 2 123445555677755544
No 392
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=87.98 E-value=8.8 Score=30.31 Aligned_cols=85 Identities=15% Similarity=0.088 Sum_probs=47.7
Q ss_pred EEEEEeCCCcccchH-HH---HHH--hhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCC
Q psy11289 31 RLDILDTAGQEEFSA-MR---EQY--MRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQ 104 (159)
Q Consensus 31 ~~~l~D~~g~~~~~~-~~---~~~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~ 104 (159)
.+.|.||+|...... +. ... ...+|.+++|+|++... ++......+.... + ..-+|.||.|....-
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~-i~gvIlTKlD~~a~~- 248 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---G-IGGIIITKLDGTAKG- 248 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---C-CCEEEEecccCCCcc-
Confidence 567799999865432 11 111 33679999999987642 2222222222211 1 234678999954322
Q ss_pred CCHHHHHHHHHHcCCcEEEeCC
Q psy11289 105 VSSMDAQNVARQLRIPYIECSA 126 (159)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~sa 126 (159)
-.+...+...+.|+..++.
T Consensus 249 ---G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 249 ---GGALSAVAETGAPIKFIGT 267 (437)
T ss_pred ---cHHHHHHHHHCcCEEEEec
Confidence 2345666677888665544
No 393
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=87.98 E-value=7 Score=28.28 Aligned_cols=69 Identities=12% Similarity=0.172 Sum_probs=40.1
Q ss_pred eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEEeCCCC
Q psy11289 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM-LMVGNKADL 99 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~D~ 99 (159)
.+.+.+.||+|.-..... ...+.-+|.+|++... +..++..+...++.+.+.....+.++ .+|.|+.+.
T Consensus 115 ~yD~ViID~~~~~~~~~~-~~~l~aAD~vlip~~~-~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 115 DYDVILFDVLGDVVCGGF-ATPLQYADYALVVAAN-DFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred cCCEEEEecCCccccCcc-ccchhhcCEEEEEecC-chhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 456677999875321111 1235678999998754 45566666555554444322244554 467899874
No 394
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=87.42 E-value=6.7 Score=26.22 Aligned_cols=87 Identities=13% Similarity=0.172 Sum_probs=52.2
Q ss_pred eEEEEEEeCCCcccchHHHHHHh--hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCc---
Q psy11289 29 PARLDILDTAGQEEFSAMREQYM--RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFP-MLMVGNKADLDHQ--- 102 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~~--~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~--- 102 (159)
.+.+-+.|+|+... ....... ..+|.++++...+ +.+...+.+++..+.+. +.+ .-++.|+.+....
T Consensus 67 ~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvv~N~~~~~~~~~~ 139 (169)
T cd02037 67 ELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKV----NIPILGVVENMSYFVCPHCG 139 (169)
T ss_pred CCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhc----CCCeEEEEEcCCcccCCCCC
Confidence 34566799998642 2122222 5789999998765 56677777777777664 334 3467888874211
Q ss_pred --CCC-CHHHHHHHHHHcCCcEE
Q psy11289 103 --RQV-SSMDAQNVARQLRIPYI 122 (159)
Q Consensus 103 --~~~-~~~~~~~~~~~~~~~~~ 122 (159)
... .......+++.++.+++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~ 162 (169)
T cd02037 140 KKIYIFGKGGGEKLAEELGVPLL 162 (169)
T ss_pred CcccccCCccHHHHHHHcCCCEE
Confidence 111 12355677777776643
No 395
>KOG0463|consensus
Probab=87.31 E-value=7.1 Score=30.35 Aligned_cols=95 Identities=16% Similarity=0.151 Sum_probs=49.4
Q ss_pred EEEEeCCCcccchHHHH--HHhhcCCEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCC
Q psy11289 32 LDILDTAGQEEFSAMRE--QYMRSGEGFLLVFSVTDR---NSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVS 106 (159)
Q Consensus 32 ~~l~D~~g~~~~~~~~~--~~~~~~~~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~ 106 (159)
+.|+|.+|+++|-...- ..-.-.|-..++..++-. .+-+++. ..+ ...+|+.+|.+|+|+.....+
T Consensus 221 iTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLg----LAL----aL~VPVfvVVTKIDMCPANiL- 291 (641)
T KOG0463|consen 221 ITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLG----LAL----ALHVPVFVVVTKIDMCPANIL- 291 (641)
T ss_pred EEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhh----hhh----hhcCcEEEEEEeeccCcHHHH-
Confidence 56699999999854211 001223445554443321 1122221 111 146788888888887432111
Q ss_pred HHHH-----------------------------HHHHHHcCCcEEEeCCCCCCCHHHH
Q psy11289 107 SMDA-----------------------------QNVARQLRIPYIECSAKVRINVDQA 135 (159)
Q Consensus 107 ~~~~-----------------------------~~~~~~~~~~~~~~sa~~~~~i~~~ 135 (159)
.+.. .+|..+.=||+|.+|-.+|.|+.-+
T Consensus 292 qEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL 349 (641)
T KOG0463|consen 292 QETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL 349 (641)
T ss_pred HHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH
Confidence 1111 1222222367899999999998654
No 396
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=87.25 E-value=8.8 Score=27.42 Aligned_cols=67 Identities=13% Similarity=0.207 Sum_probs=43.3
Q ss_pred eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCCcEEEEEeCCC
Q psy11289 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK--DRDEFPMLMVGNKAD 98 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~p~ivv~nK~D 98 (159)
.+.+.|.|+||... ......+..+|.+|+...++ +.++..+.+++..+.... ...+.|..++.|.++
T Consensus 83 ~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps-~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 83 GFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLT-PLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCc-HHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 45677799999764 34455667889999887663 444555555544443321 124678788999886
No 397
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=85.37 E-value=2.3 Score=28.66 Aligned_cols=30 Identities=20% Similarity=0.115 Sum_probs=17.1
Q ss_pred HHHHHHHcCCcEEEeCCCCCCCHHHHHHHH
Q psy11289 110 AQNVARQLRIPYIECSAKVRINVDQAFHEL 139 (159)
Q Consensus 110 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 139 (159)
..+..+++|++++.+|+.++.|++++.+.+
T Consensus 4 ~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l 33 (161)
T PF03193_consen 4 LLEQYEKLGYPVFFISAKTGEGIEELKELL 33 (161)
T ss_dssp HHHHHHHTTSEEEE-BTTTTTTHHHHHHHH
T ss_pred HHHHHHHcCCcEEEEeCCCCcCHHHHHHHh
Confidence 344455566666666666666666665544
No 398
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=85.30 E-value=12 Score=27.01 Aligned_cols=67 Identities=12% Similarity=0.106 Sum_probs=37.7
Q ss_pred eEEEEEEeCCCcccchHHH-HHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEEeC
Q psy11289 29 PARLDILDTAGQEEFSAMR-EQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPML-MVGNK 96 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~-~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK 96 (159)
.+.+.|+|++|......+. .....-+|.++++..+ ++.++..+.+.++.+.......+.++. ++.|+
T Consensus 116 ~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p-~~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~ 184 (270)
T cd02040 116 DLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSG-EMMALYAANNICKGILKYAKSGGVRLGGLICNS 184 (270)
T ss_pred CCCEEEEecccCcccCCcccccccccccEEEEEecC-chHHHHHHHHHHHHHHHhCccCCCceEEEEEec
Confidence 3556779998764322211 1122358999998877 455666666665555554332345554 44454
No 399
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=84.23 E-value=21 Score=29.20 Aligned_cols=86 Identities=21% Similarity=0.205 Sum_probs=48.3
Q ss_pred EEEEEEeCCCcccchHH-HHHH--h--hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCC
Q psy11289 30 ARLDILDTAGQEEFSAM-REQY--M--RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQ 104 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~-~~~~--~--~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~ 104 (159)
+.+.|+||+|....... ...+ + ......++|++.+. +..++...+..+... .+.-+|.||.|...
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~~-----~~~gvILTKlDEt~--- 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAHA-----KPQGVVLTKLDETG--- 498 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHhh-----CCeEEEEecCcCcc---
Confidence 56777999997543321 1110 1 11234566677654 233443334443321 35678899999532
Q ss_pred CCHHHHHHHHHHcCCcEEEeCC
Q psy11289 105 VSSMDAQNVARQLRIPYIECSA 126 (159)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~sa 126 (159)
..-.........++++..++.
T Consensus 499 -~lG~aLsv~~~~~LPI~yvt~ 519 (559)
T PRK12727 499 -RFGSALSVVVDHQMPITWVTD 519 (559)
T ss_pred -chhHHHHHHHHhCCCEEEEeC
Confidence 234566777778888666654
No 400
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=84.18 E-value=6.9 Score=25.79 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=36.4
Q ss_pred eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy11289 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKAD 98 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 98 (159)
.+.+-|.||+|.... ...++..||-++++..++-.+.+.-++ ..+. ...-+++.||+|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k---~~~~------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIK---AGIM------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhh---hhHh------hhcCEEEEeCCC
Confidence 456777999997532 235788899999988776333332221 1121 223478899987
No 401
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=83.94 E-value=13 Score=28.16 Aligned_cols=89 Identities=18% Similarity=0.152 Sum_probs=52.3
Q ss_pred EEEEEEeCCCcccchHHHHHHhh--------cCCEEEEEEECCChhhHHH-HH-HHHHHHHhhcCCCCCcEEEEEeCCCC
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMR--------SGEGFLLVFSVTDRNSFEE-IY-KFHRQILRVKDRDEFPMLMVGNKADL 99 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~--------~~~~ii~v~d~~~~~s~~~-~~-~~~~~i~~~~~~~~~p~ivv~nK~D~ 99 (159)
+...++.+.|...-.+....+.. ..|+++-|+|+.+-..... .. ....++.. --+++.||.|+
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~-------AD~ivlNK~Dl 157 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF-------ADVIVLNKTDL 157 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh-------CcEEEEecccC
Confidence 34456888888766555554433 3488999999877433222 22 22223322 23889999999
Q ss_pred CCcCCCCHHHHHHHHHHcC--CcEEEeCCC
Q psy11289 100 DHQRQVSSMDAQNVARQLR--IPYIECSAK 127 (159)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~--~~~~~~sa~ 127 (159)
.+... .+......++++ .+++++|..
T Consensus 158 v~~~~--l~~l~~~l~~lnp~A~i~~~~~~ 185 (323)
T COG0523 158 VDAEE--LEALEARLRKLNPRARIIETSYG 185 (323)
T ss_pred CCHHH--HHHHHHHHHHhCCCCeEEEcccc
Confidence 86543 333344444443 668888773
No 402
>PRK10867 signal recognition particle protein; Provisional
Probab=83.40 E-value=17 Score=28.66 Aligned_cols=86 Identities=15% Similarity=0.098 Sum_probs=47.3
Q ss_pred EEEEEEeCCCcccchH-HHH---HH--hhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcC
Q psy11289 30 ARLDILDTAGQEEFSA-MRE---QY--MRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQR 103 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~-~~~---~~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 103 (159)
+.+.|.||+|...... +.. .+ .-..+.+++|.|..... ++......+.+. .+ ..-+|.||.|.....
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~---~~-i~giIlTKlD~~~rg 256 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEA---LG-LTGVILTKLDGDARG 256 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhh---CC-CCEEEEeCccCcccc
Confidence 4566799999754322 111 11 12568889999986542 222222333321 11 234567999953322
Q ss_pred CCCHHHHHHHHHHcCCcEEEeCC
Q psy11289 104 QVSSMDAQNVARQLRIPYIECSA 126 (159)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~sa 126 (159)
. .+...+...++|+..++.
T Consensus 257 G----~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 257 G----AALSIRAVTGKPIKFIGT 275 (433)
T ss_pred c----HHHHHHHHHCcCEEEEeC
Confidence 2 356677777888665544
No 403
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=83.14 E-value=7.1 Score=28.84 Aligned_cols=99 Identities=14% Similarity=0.176 Sum_probs=46.8
Q ss_pred EEEEECCeeEEEEEEeCCCcccc-------hHH-------HHHHh-------------hcCCEEEEEEECCChhhHHHHH
Q psy11289 21 KQCVIDDIPARLDILDTAGQEEF-------SAM-------REQYM-------------RSGEGFLLVFSVTDRNSFEEIY 73 (159)
Q Consensus 21 ~~~~~~~~~~~~~l~D~~g~~~~-------~~~-------~~~~~-------------~~~~~ii~v~d~~~~~s~~~~~ 73 (159)
..+.-++.++.+.++||||.... ..+ ...++ ...|+||++.+++.. .+..+.
T Consensus 54 ~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~D 132 (281)
T PF00735_consen 54 VELEENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLD 132 (281)
T ss_dssp EEEEETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHH
T ss_pred EEeccCCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHH
Confidence 33444788899999999994321 110 11111 135999999998642 111111
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCC--HHHHHHHHHHcCCcEEEe
Q psy11289 74 KFHRQILRVKDRDEFPMLMVGNKADLDHQRQVS--SMDAQNVARQLRIPYIEC 124 (159)
Q Consensus 74 ~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~ 124 (159)
+..+.+.. ..+++|=|..|+|.....++. .....+-.+..+++++..
T Consensus 133 --i~~mk~Ls--~~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~~~I~~f~f 181 (281)
T PF00735_consen 133 --IEFMKRLS--KRVNVIPVIAKADTLTPEELQAFKQRIREDLEENNIKIFDF 181 (281)
T ss_dssp --HHHHHHHT--TTSEEEEEESTGGGS-HHHHHHHHHHHHHHHHHTT--S---
T ss_pred --HHHHHHhc--ccccEEeEEecccccCHHHHHHHHHHHHHHHHHcCceeecc
Confidence 12333332 446788899999974322211 111223334556765543
No 404
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=83.08 E-value=11 Score=25.13 Aligned_cols=82 Identities=16% Similarity=0.073 Sum_probs=44.8
Q ss_pred EEEEEeCCCcccchH----HHHHHh--hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCC
Q psy11289 31 RLDILDTAGQEEFSA----MREQYM--RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQ 104 (159)
Q Consensus 31 ~~~l~D~~g~~~~~~----~~~~~~--~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~ 104 (159)
.+.+.|++|...... ....+. ...+.+++|++.....+. ..+...+.+.. + ..-++.||.|....
T Consensus 84 d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~~~~~~~~~~---~-~~~viltk~D~~~~-- 154 (173)
T cd03115 84 DVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VNQAKAFNEAL---G-ITGVILTKLDGDAR-- 154 (173)
T ss_pred CEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HHHHHHHHhhC---C-CCEEEEECCcCCCC--
Confidence 345599999853321 111222 248999999998654322 22333333322 2 24566799996432
Q ss_pred CCHHHHHHHHHHcCCcEEE
Q psy11289 105 VSSMDAQNVARQLRIPYIE 123 (159)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~ 123 (159)
.....+.+...++|+..
T Consensus 155 --~g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 155 --GGAALSIRAVTGKPIKF 171 (173)
T ss_pred --cchhhhhHHHHCcCeEe
Confidence 22334466677777543
No 405
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=81.75 E-value=9.2 Score=23.14 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=9.8
Q ss_pred HHHHHHHHHcCCcEEEeC
Q psy11289 108 MDAQNVARQLRIPYIECS 125 (159)
Q Consensus 108 ~~~~~~~~~~~~~~~~~s 125 (159)
..+++.|++.++|++.+.
T Consensus 65 ~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 65 WKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HHHHHHHHHcCCcEEEEC
Confidence 345555555555555553
No 406
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=81.39 E-value=19 Score=26.61 Aligned_cols=115 Identities=9% Similarity=0.118 Sum_probs=60.0
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEEeCCCCCCc------
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM-LMVGNKADLDHQ------ 102 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~D~~~~------ 102 (159)
+.+.+.||+|.-....+ ...+..||.+|++.++ ++.++..+...++.+.......+.+. -++.|+.+....
T Consensus 116 yD~IiIDt~~~l~~~a~-~aal~~AD~viIp~~p-~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~~~~~~~~~~ 193 (290)
T CHL00072 116 YDIILFDVLGDVVCGGF-AAPLNYADYCIIITDN-GFDALFAANRIAASVREKARTHPLRLAGLVGNRTSKRDLIDKYVE 193 (290)
T ss_pred CCEEEEecCCcceechh-hhhhhcCCEEEEEecC-CHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCchhHHHHHHH
Confidence 55677999876322211 1234678999998866 45566666555554444322233433 377898873110
Q ss_pred -------CCCCHHHHHHHHHHcCCcEEEeCCCCCCC---HHHHHHHHHHHHHhcc
Q psy11289 103 -------RQVSSMDAQNVARQLRIPYIECSAKVRIN---VDQAFHELVRIVLLHT 147 (159)
Q Consensus 103 -------~~~~~~~~~~~~~~~~~~~~~~sa~~~~~---i~~~~~~l~~~~~~~~ 147 (159)
..++......-+...|.++++.+.. ..+ ....+..+.+.+..+.
T Consensus 194 ~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p~-s~~~~~~a~~y~~La~ell~~~ 247 (290)
T CHL00072 194 ACPMPVLEVLPLIEDIRVSRVKGKTLFEMVES-EPSLNYVCDYYLNIADQLLSQP 247 (290)
T ss_pred HcCCceEEECCCChHHHHHHhCCCceEEeCCC-CcchhHHHHHHHHHHHHHHhCC
Confidence 0111122222233344555555443 222 4566777777776554
No 407
>KOG2485|consensus
Probab=80.91 E-value=8.3 Score=29.02 Aligned_cols=103 Identities=14% Similarity=0.009 Sum_probs=53.7
Q ss_pred EeCCCccc-chHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHH
Q psy11289 35 LDTAGQEE-FSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNV 113 (159)
Q Consensus 35 ~D~~g~~~-~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 113 (159)
-+.||+-- --...+..+...|.+|=+=|+.=|=|-+. . .+.... +.+|=|+|.||+|+.+.... ..-++.+
T Consensus 27 ~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn--~---~~~~~~--~~k~riiVlNK~DLad~~~~-k~~iq~~ 98 (335)
T KOG2485|consen 27 RWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRN--E---LFQDFL--PPKPRIIVLNKMDLADPKEQ-KKIIQYL 98 (335)
T ss_pred ccCchHHHHHHHHHHhhcccccEEEEeeccccCCcccc--H---HHHHhc--CCCceEEEEecccccCchhh-hHHHHHH
Confidence 34555532 12234555778899999988876533222 1 122222 36788999999999874332 3344455
Q ss_pred HHHcCCcEEEeCCC--CCC---CHHHHHHHHHHHHHh
Q psy11289 114 ARQLRIPYIECSAK--VRI---NVDQAFHELVRIVLL 145 (159)
Q Consensus 114 ~~~~~~~~~~~sa~--~~~---~i~~~~~~l~~~~~~ 145 (159)
+.+....++..++. ... ++..++.++...+.+
T Consensus 99 ~~~~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r 135 (335)
T KOG2485|consen 99 EWQNLESYIKLDCNKDCNKQVSPLLKILTILSEELVR 135 (335)
T ss_pred HhhcccchhhhhhhhhhhhccccHHHHHHHHHHHHHH
Confidence 55533333333333 222 344444444444433
No 408
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=80.86 E-value=18 Score=25.97 Aligned_cols=102 Identities=10% Similarity=0.183 Sum_probs=60.7
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhH--HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCH
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSF--EEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSS 107 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 107 (159)
+.+-|.|+.|.... .....+..+|.+|+=.-.+..+.- ....+|+.+..+.. ..++|.-|+.++.+-.... ...
T Consensus 84 ~d~VlvDleG~as~--~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~-~~~ip~~Vl~Tr~~~~~~~-~~~ 159 (231)
T PF07015_consen 84 FDFVLVDLEGGASE--LNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAE-RRDIPAAVLFTRVPAARLT-RAQ 159 (231)
T ss_pred CCEEEEeCCCCCch--hHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhh-CCCCCeeEEEecCCcchhh-HHH
Confidence 45677999887532 344556789999986666543332 22335666665433 3678999999998732111 111
Q ss_pred HHHHHHHHHcCCcEEEeCCCCCCCHHHHHH
Q psy11289 108 MDAQNVARQLRIPYIECSAKVRINVDQAFH 137 (159)
Q Consensus 108 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 137 (159)
....++.+ ++|++.+.-....-..++|.
T Consensus 160 ~~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 160 RIISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHHh--cCCccccccccHHHHHHHHH
Confidence 12223332 58888888777665555555
No 409
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=79.90 E-value=8.8 Score=25.92 Aligned_cols=68 Identities=13% Similarity=0.046 Sum_probs=47.0
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDH 101 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 101 (159)
+.+.+.|+|+.... .....+..+|.+|++.+.+. .+...+..+...+..... .-..+-+|.|+.+..+
T Consensus 95 yD~iiiD~~~~~~~--~~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~~-~~~~~~vv~N~v~~~~ 162 (195)
T PF01656_consen 95 YDYIIIDTPPGLSD--PVRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLGK-KLKIIGVVINRVDPGN 162 (195)
T ss_dssp SSEEEEEECSSSSH--HHHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHTH-TEEEEEEEEEEETSCC
T ss_pred ccceeecccccccH--HHHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhcc-ccceEEEEEeeeCCCc
Confidence 45667999976543 35667779999999999864 557777777777666432 1124567899998643
No 410
>KOG1547|consensus
Probab=79.17 E-value=22 Score=25.99 Aligned_cols=118 Identities=19% Similarity=0.189 Sum_probs=61.7
Q ss_pred EEEEEECCeeEEEEEEeCCCcccc---hHHH-----------HHHhh--------------cCCEEEEEEECCChhhHHH
Q psy11289 20 TKQCVIDDIPARLDILDTAGQEEF---SAMR-----------EQYMR--------------SGEGFLLVFSVTDRNSFEE 71 (159)
Q Consensus 20 ~~~~~~~~~~~~~~l~D~~g~~~~---~~~~-----------~~~~~--------------~~~~ii~v~d~~~~~s~~~ 71 (159)
+..+.=+|.+.++.+.||||.-++ ...| +.|++ .+++|++...++- -++..
T Consensus 94 thvieE~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrp 172 (336)
T KOG1547|consen 94 THVIEEKGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRP 172 (336)
T ss_pred eeeeeecceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCc
Confidence 444444788899999999996432 1122 22221 3588888887753 23333
Q ss_pred HH-HHHHHHHhhcCCCCCcEEEEEeCCCCCC--cCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 72 IY-KFHRQILRVKDRDEFPMLMVGNKADLDH--QRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 72 ~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
+. ..++.+.+. +-+|=|.-|.|... ++..=.+.+++-...+++.+++-.+.+.+.=+..++.-++..
T Consensus 173 lDieflkrLt~v-----vNvvPVIakaDtlTleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kvR~~ 242 (336)
T KOG1547|consen 173 LDIEFLKRLTEV-----VNVVPVIAKADTLTLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKVRES 242 (336)
T ss_pred ccHHHHHHHhhh-----heeeeeEeecccccHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHHHhh
Confidence 22 223333332 23454567888431 111111222333445678888887777655555555554433
No 411
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=79.03 E-value=16 Score=27.48 Aligned_cols=85 Identities=7% Similarity=0.105 Sum_probs=47.1
Q ss_pred EEEEEEeCCCcccchHHHHHHhh--------cCCEEEEEEECCChhhHH-HHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMR--------SGEGFLLVFSVTDRNSFE-EIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~--------~~~~ii~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
....+.++.|.....++...+.. ..++++.|+|+.+-.... .......++.. .-+++.||.|+.
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~-------AD~IvlnK~Dl~ 163 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY-------ADRILLTKTDVA 163 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh-------CCEEEEeccccC
Confidence 34456888888766665555432 248899999997633221 11111223322 237889999986
Q ss_pred CcCCCCHHHHHHHHHHcC--CcEEEeC
Q psy11289 101 HQRQVSSMDAQNVARQLR--IPYIECS 125 (159)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~--~~~~~~s 125 (159)
.. .+......+.++ .+++.++
T Consensus 164 ~~----~~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 164 GE----AEKLRERLARINARAPVYTVV 186 (318)
T ss_pred CH----HHHHHHHHHHhCCCCEEEEec
Confidence 52 133444444443 5566544
No 412
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=77.95 E-value=20 Score=24.73 Aligned_cols=65 Identities=18% Similarity=0.140 Sum_probs=38.2
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCC
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFP-MLMVGNKADLD 100 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~ 100 (159)
+.+.|+|+|...... ......+.+|.+|+|.+... .+...+..-...+.+ .+.+ .-+|.||.+..
T Consensus 128 yD~ViiD~pp~~~~~-~~~~~~~~~D~vilV~~~~~-~~~~~~~~~~~~l~~----~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 128 FDYIIIDTPPIGTVT-DAAIIARACDASILVTDAGE-IKKRDVQKAKEQLEQ----TGSNFLGVVLNKVDIS 193 (204)
T ss_pred CCEEEEeCCCccccc-hHHHHHHhCCeEEEEEECCC-CCHHHHHHHHHHHHh----CCCCEEEEEEeCcccc
Confidence 456679999632211 12345567899999998753 344444444444433 2334 44788998854
No 413
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=77.59 E-value=22 Score=25.12 Aligned_cols=63 Identities=14% Similarity=0.077 Sum_probs=39.2
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCC
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFP-MLMVGNKADL 99 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~ 99 (159)
+.+.++|+|+.... .....+..+|.++++.+.+ ..++..+.+....... .+.+ ..++.|+.+.
T Consensus 109 yD~VIiD~p~~~~~--~~~~~l~~ad~vliv~~~~-~~s~~~~~~~~~~~~~----~~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 109 TDFLLIDAPAGLER--DAVTALAAADELLLVVNPE-ISSITDALKTKIVAEK----LGTAILGVVLNRVTR 172 (251)
T ss_pred CCEEEEeCCCccCH--HHHHHHHhCCeEEEEECCC-CchHHHHHHHHHHHHh----cCCceEEEEEECCCc
Confidence 55677999976543 3344456799999999875 4455554443332222 2334 4588999875
No 414
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=77.39 E-value=5 Score=30.90 Aligned_cols=57 Identities=14% Similarity=0.016 Sum_probs=35.6
Q ss_pred cccccccccceEEEEEEECCe---------------eEEEEEEeCCCcccchH-------HHHHHhhcCCEEEEEEECC
Q psy11289 8 VTDYDPTIEDSYTKQCVIDDI---------------PARLDILDTAGQEEFSA-------MREQYMRSGEGFLLVFSVT 64 (159)
Q Consensus 8 ~~~~~pt~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~~-------~~~~~~~~~~~ii~v~d~~ 64 (159)
..+|+.|+.+.....+.+.+. ...+.+.|+||..+-.+ ..-..++.+|+++.|++..
T Consensus 30 ~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 30 AANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 456766655444344444332 23577899999865322 2223468999999999984
No 415
>COG2452 Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair]
Probab=76.82 E-value=22 Score=24.65 Aligned_cols=69 Identities=13% Similarity=0.188 Sum_probs=46.5
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 74 KFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 74 ~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
+++..++.......+..+++.-|--+. ....+-..++++..|+.++.+..-+..+ +++++.+++.+...
T Consensus 101 k~~~kll~li~~~~V~rVvV~ykDRL~---RFGfe~le~~~~a~~~eivvv~~~e~~~-eELveDlisIltsf 169 (193)
T COG2452 101 KGLLKLLKLVEGNSVRRVVVSYKDRLN---RFGFELVEAVCKAHNVEIVVVNQEDKDS-EELVEDLVSILTSF 169 (193)
T ss_pred hhHHHHHHHHcCCceeEEEEEccchHh---HHhHHHHHHHHHhcCcEEEEecCCCCCH-HHHHHHHHHHHHHH
Confidence 444555555554555666655554432 2226677888889999999998777666 99999998776543
No 416
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=74.76 E-value=16 Score=22.00 Aligned_cols=45 Identities=11% Similarity=0.128 Sum_probs=31.8
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHH
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHR 77 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~ 77 (159)
+.+.++|+|+.... .....+..+|.++++.+. +..++..+.++++
T Consensus 40 ~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~-~~~s~~~~~~~~~ 84 (104)
T cd02042 40 YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP-SPLDLDGLEKLLE 84 (104)
T ss_pred CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC-CHHHHHHHHHHHH
Confidence 55677999987532 234667789999999976 4566666666655
No 417
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=74.13 E-value=34 Score=25.56 Aligned_cols=81 Identities=15% Similarity=0.214 Sum_probs=49.9
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHH
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMD 109 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 109 (159)
+.+.++|+|+... ......+..+|.++++.+. +..++..+.++++.+.... . .+-++.|+... .....
T Consensus 205 ~D~VIID~p~~~~--~~~~~~L~~AD~vliV~~~-~~~sl~~a~r~l~~l~~~~--~--~~~lVv~~~~~---~~~~~-- 272 (322)
T TIGR03815 205 GDLVVVDLPRRLT--PAAETALESADLVLVVVPA-DVRAVAAAARVCPELGRRN--P--DLRLVVRGPAP---AGLDP-- 272 (322)
T ss_pred CCEEEEeCCCCCC--HHHHHHHHHCCEEEEEcCC-cHHHHHHHHHHHHHHhhhC--C--CeEEEEeCCCC---CCCCH--
Confidence 5567799997753 3355667889999999865 4567777777776665532 2 33444564321 22223
Q ss_pred HHHHHHHcCCcEEE
Q psy11289 110 AQNVARQLRIPYIE 123 (159)
Q Consensus 110 ~~~~~~~~~~~~~~ 123 (159)
.++.+.+|.+++.
T Consensus 273 -~~i~~~lg~~v~~ 285 (322)
T TIGR03815 273 -EEIAESLGLPLLG 285 (322)
T ss_pred -HHHHHHhCCCcee
Confidence 3556667776554
No 418
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=73.93 E-value=41 Score=26.37 Aligned_cols=86 Identities=13% Similarity=0.087 Sum_probs=47.3
Q ss_pred EEEEEEeCCCcccchHH----HHHHhh--cCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcC
Q psy11289 30 ARLDILDTAGQEEFSAM----REQYMR--SGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQR 103 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~----~~~~~~--~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 103 (159)
+.+.|.||+|....... ...+.. ..+.+++|.+++ ....++...++.+.. . .+--+|.||.|...
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f~~----l-~i~glI~TKLDET~-- 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKLAE----I-PIDGFIITKMDETT-- 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhcCc----C-CCCEEEEEcccCCC--
Confidence 45677999999654321 222222 346666776653 223333333322211 1 13456799999542
Q ss_pred CCCHHHHHHHHHHcCCcEEEeCC
Q psy11289 104 QVSSMDAQNVARQLRIPYIECSA 126 (159)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~sa 126 (159)
..-.+..++...++|+..+|.
T Consensus 357 --~~G~~Lsv~~~tglPIsylt~ 377 (407)
T PRK12726 357 --RIGDLYTVMQETNLPVLYMTD 377 (407)
T ss_pred --CccHHHHHHHHHCCCEEEEec
Confidence 234556777888888766654
No 419
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=73.49 E-value=32 Score=24.96 Aligned_cols=67 Identities=10% Similarity=0.085 Sum_probs=36.0
Q ss_pred eEEEEEEeCCCcccchHH-HHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEEeC
Q psy11289 29 PARLDILDTAGQEEFSAM-REQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPML-MVGNK 96 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~-~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK 96 (159)
.+.+.++||+|..-...+ ......-+|.++++..+ ++.++..+..+++.+.......+.++. ++.|+
T Consensus 115 ~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p-~~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~ 183 (275)
T TIGR01287 115 DLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSG-EMMALYAANNICKGILKYAKSGGVRLGGLICNS 183 (275)
T ss_pred cCCEEEEeccCcceecceeeccccccccEEEEEecc-hHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcC
Confidence 355667999875422111 11112357888888865 456666666665554444322344444 44454
No 420
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=73.44 E-value=9.2 Score=27.77 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.2
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 119 IPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 119 ~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
+|++..||+++.|+..+++.+...+
T Consensus 241 ~pv~~gSa~~~~G~~~ll~~~~~~~ 265 (268)
T cd04170 241 VPVLCGSALTNIGVRELLDALVHLL 265 (268)
T ss_pred EEEEEeeCCCCcCHHHHHHHHHHhC
Confidence 5789999999999999999988764
No 421
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=72.65 E-value=34 Score=27.71 Aligned_cols=57 Identities=9% Similarity=-0.025 Sum_probs=41.9
Q ss_pred CCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCC--CCCCCHHHHHHHHHHHHH
Q psy11289 86 DEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSA--KVRINVDQAFHELVRIVL 144 (159)
Q Consensus 86 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa--~~~~~i~~~~~~l~~~~~ 144 (159)
-+.|+||..|+.....+. ..+..+++|++.|+++..+.. +=|.|-.++-+.+++.+.
T Consensus 355 fg~p~VVaiN~F~~Dt~~--Ei~~v~~~~~~~g~~~~~~~~~~~GG~Ga~eLA~~Vi~a~e 413 (524)
T cd00477 355 FGVPVVVAINKFSTDTDA--ELALVRKLAEEAGAFVAVSEHWAEGGKGAVELAEAVIEACE 413 (524)
T ss_pred cCCCeEEEecCCCCCCHH--HHHHHHHHHHHcCCCEEEehhhhhhhhhHHHHHHHHHHHhc
Confidence 478999999998743222 245568889999988766644 456888888888887765
No 422
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=72.39 E-value=28 Score=25.26 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=26.5
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|+|+|..... .-...+...+|++|+|.... ..+...+......+.+
T Consensus 213 yD~ViiD~pp~~~~-~d~~~~~~~~d~vilV~~~~-~t~~~~~~~~~~~l~~ 262 (274)
T TIGR03029 213 YDVVIVDTPSAEHS-SDAQIVATRARGTLIVSRVN-ETRLHELTSLKEHLSG 262 (274)
T ss_pred CCEEEEeCCCcccc-cHHHHHHHhCCeEEEEEECC-CCCHHHHHHHHHHHHh
Confidence 44566777754321 12334456677777777653 2444455444444443
No 423
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=72.25 E-value=45 Score=26.15 Aligned_cols=107 Identities=20% Similarity=0.196 Sum_probs=57.6
Q ss_pred EEEEEEeCCCcccchHH----HHHHhhc--CCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcC
Q psy11289 30 ARLDILDTAGQEEFSAM----REQYMRS--GEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQR 103 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~----~~~~~~~--~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 103 (159)
+.+.|.||.|...+... ...++.. ..-+.+|++++.. .+++...++++.... .-=++.+|.|-
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~-----i~~~I~TKlDE---- 350 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFP-----IDGLIFTKLDE---- 350 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCC-----cceeEEEcccc----
Confidence 46778999999876542 3334332 3445566666542 445555555553321 12356899994
Q ss_pred CCCHHHHHHHHHHcCCcEEEeCCC--CCCCHHHH-HHHHHHHHHhcc
Q psy11289 104 QVSSMDAQNVARQLRIPYIECSAK--VRINVDQA-FHELVRIVLLHT 147 (159)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~sa~--~~~~i~~~-~~~l~~~~~~~~ 147 (159)
.-+.-....+..+.+.|+..++-- -.++|... -+++++.+....
T Consensus 351 T~s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~ 397 (407)
T COG1419 351 TTSLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTF 397 (407)
T ss_pred cCchhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhccc
Confidence 334555667777777775544422 22333222 344555555443
No 424
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=71.55 E-value=15 Score=24.32 Aligned_cols=50 Identities=10% Similarity=0.156 Sum_probs=37.8
Q ss_pred HHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy11289 46 MREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKA 97 (159)
Q Consensus 46 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 97 (159)
..+...+.-++.|..-..+.|.|+.+-..|+.+.--.. +.-.++++|||.
T Consensus 76 v~keLt~~y~vYivtaamdhp~s~~dK~eWl~E~FPFi--~~qn~vfCgnKn 125 (180)
T COG4502 76 VLKELTSIYNVYIVTAAMDHPKSCEDKGEWLKEKFPFI--SYQNIVFCGNKN 125 (180)
T ss_pred HHHHHHhhheEEEEEeccCCchhHHHHHHHHHHHCCCC--ChhhEEEecCCC
Confidence 34555566688888888889999999899988765544 445688999885
No 425
>KOG0781|consensus
Probab=71.30 E-value=53 Score=26.60 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=43.8
Q ss_pred EEEEEEeCCCcccch-HHHHHH-----hhcCCEEEEEEECC-ChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q psy11289 30 ARLDILDTAGQEEFS-AMREQY-----MRSGEGFLLVFSVT-DRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDH 101 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~-~~~~~~-----~~~~~~ii~v~d~~-~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 101 (159)
+.+.|.||+|...-. .++... ....|.|++|-.+- --+|.+++..+-..+..... +..---++.+|+|..+
T Consensus 467 fDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~-~r~id~~~ltk~dtv~ 544 (587)
T KOG0781|consen 467 FDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHST-PRLIDGILLTKFDTVD 544 (587)
T ss_pred CCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCC-ccccceEEEEeccchh
Confidence 445669999985432 233222 35789999997653 34678888776666655432 2222335789999654
No 426
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=71.20 E-value=35 Score=27.95 Aligned_cols=57 Identities=9% Similarity=-0.085 Sum_probs=41.1
Q ss_pred CCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCC--CCCCCHHHHHHHHHHHHH
Q psy11289 86 DEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSA--KVRINVDQAFHELVRIVL 144 (159)
Q Consensus 86 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa--~~~~~i~~~~~~l~~~~~ 144 (159)
-+.|+||..|+.....+. ..+..++++.+.|+++..+.. +=|.|-.++-+.+++.+.
T Consensus 400 fg~pvVVaiN~F~~Dt~~--Ei~~l~~~~~~~g~~~~v~~~wa~GGeGa~eLA~~Vv~a~e 458 (587)
T PRK13507 400 SGINPVVCINAFYTDTHA--EIAIVRRLAEQAGARVAVSRHWEKGGEGALELADAVIDACN 458 (587)
T ss_pred cCCCeEEEeCCCCCCCHH--HHHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHhh
Confidence 478999999998743222 245567888898988665544 346788888888887765
No 427
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.05 E-value=17 Score=32.50 Aligned_cols=67 Identities=25% Similarity=0.233 Sum_probs=40.8
Q ss_pred EEeCCCccc--------chHHHHHH---------hhcCCEEEEEEECCChh------hHHHH---HHHHHHHHhhcCCCC
Q psy11289 34 ILDTAGQEE--------FSAMREQY---------MRSGEGFLLVFSVTDRN------SFEEI---YKFHRQILRVKDRDE 87 (159)
Q Consensus 34 l~D~~g~~~--------~~~~~~~~---------~~~~~~ii~v~d~~~~~------s~~~~---~~~~~~i~~~~~~~~ 87 (159)
++||+|... -...|..+ .+..+|||++.|+++.- ....+ ..-++++.+... -.
T Consensus 178 lIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~-~~ 256 (1188)
T COG3523 178 LIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH-AR 256 (1188)
T ss_pred EEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc-cC
Confidence 478887632 12345544 24679999999997621 11122 222344444333 46
Q ss_pred CcEEEEEeCCCCCC
Q psy11289 88 FPMLMVGNKADLDH 101 (159)
Q Consensus 88 ~p~ivv~nK~D~~~ 101 (159)
.|+.++.||.|+..
T Consensus 257 ~PVYl~lTk~Dll~ 270 (1188)
T COG3523 257 LPVYLVLTKADLLP 270 (1188)
T ss_pred CceEEEEecccccc
Confidence 89999999999853
No 428
>KOG0780|consensus
Probab=70.23 E-value=30 Score=27.18 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=30.1
Q ss_pred CeeEEEEEEeCCCcccch-HHHHHH-----hhcCCEEEEEEECCChhhHHH
Q psy11289 27 DIPARLDILDTAGQEEFS-AMREQY-----MRSGEGFLLVFSVTDRNSFEE 71 (159)
Q Consensus 27 ~~~~~~~l~D~~g~~~~~-~~~~~~-----~~~~~~ii~v~d~~~~~s~~~ 71 (159)
.+.+.+.|.||+|..+-. ++.+.. .-+.|-+|+|.|++-..+-..
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~ 231 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEA 231 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHH
Confidence 356778889999986532 333322 235799999999987655443
No 429
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=69.78 E-value=43 Score=24.88 Aligned_cols=110 Identities=19% Similarity=0.156 Sum_probs=59.1
Q ss_pred eEEEEEEeCCCcccc-hHHHHHHhhcCCEEEEEEECCChhhHHH---HHHHHHHHHhhcCCCCC-cEEEEEeCCCCCCcC
Q psy11289 29 PARLDILDTAGQEEF-SAMREQYMRSGEGFLLVFSVTDRNSFEE---IYKFHRQILRVKDRDEF-PMLMVGNKADLDHQR 103 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~-~~~~~~~~~~~~~ii~v~d~~~~~s~~~---~~~~~~~i~~~~~~~~~-p~ivv~nK~D~~~~~ 103 (159)
.+.+.++|++|..-- ..........+|.++++.+. +..++.. +.+.++.+.+. . .+. +.-+|.|+.+..
T Consensus 122 ~yD~IliD~~~~~~~~g~~~~~a~~~Ad~viVvt~~-e~~sl~~a~~l~k~v~~~~~~-~-~~v~i~GVV~N~~~~~--- 195 (296)
T TIGR02016 122 DFDFVLMDFLGDVVCGGFATPLARSLAEEVIVIGSN-DRQSLYVANNICNAVEYFRKL-G-GRVGLLGLVVNRDDGS--- 195 (296)
T ss_pred cCCEEEEecCCCccccccccchhhhhCCeEEEEecc-hHHHHHHHHHHHHHHHHHHHc-C-CCCcceEEEEeCCCCc---
Confidence 466777998764200 00112222357888888765 3445444 34444444332 1 223 455888998742
Q ss_pred CCCHHHHHHHHHHcCCcEEEeCC----------------CCCC-CHHHHHHHHHHHHHhccc
Q psy11289 104 QVSSMDAQNVARQLRIPYIECSA----------------KVRI-NVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~sa----------------~~~~-~i~~~~~~l~~~~~~~~~ 148 (159)
....+++++++++++..-. .... ...+.|..+.+.+.....
T Consensus 196 ----~~~~~~~~~~~i~vLg~IP~d~~i~~~~~~~~~~~~~~~~~~~~~f~~la~~i~~~~~ 253 (296)
T TIGR02016 196 ----GEAQAFAREVGIPVLAAIPADEELRRKSLAYQIVGSHATPRFGKLFEELAGNVADAPP 253 (296)
T ss_pred ----cHHHHHHHHcCCCeEEECCCCHHHHHHhcCCCeeecCCCHHHHHHHHHHHHHHHHhcC
Confidence 2446778888866543211 0111 266788888888876544
No 430
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=69.75 E-value=16 Score=23.40 Aligned_cols=43 Identities=14% Similarity=0.045 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCC-----cEEEeCCCCCCCHHHHHHHHHHHHHhccccC
Q psy11289 108 MDAQNVARQLRI-----PYIECSAKVRINVDQAFHELVRIVLLHTKQC 150 (159)
Q Consensus 108 ~~~~~~~~~~~~-----~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~ 150 (159)
+...++..++|+ .++.+||-.++.+.+.++...+.+.+--+..
T Consensus 81 ~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~efv~~i~~lGpnp 128 (132)
T COG1908 81 ELLKELLKELGIEPERVRVLWISAAEGEKFAETINEFVERIKELGPNP 128 (132)
T ss_pred HHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHHHHHHHHhCCCc
Confidence 344566667764 5899999999999999999999998765543
No 431
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=68.35 E-value=28 Score=23.77 Aligned_cols=45 Identities=16% Similarity=0.322 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEE
Q psy11289 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIE 123 (159)
Q Consensus 66 ~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (159)
++.-.++..|+.++.. .++-++++-|.. +.-...+++.+|++++.
T Consensus 45 ~~~tpe~~~W~~e~k~----~gi~v~vvSNn~---------e~RV~~~~~~l~v~fi~ 89 (175)
T COG2179 45 PDATPELRAWLAELKE----AGIKVVVVSNNK---------ESRVARAAEKLGVPFIY 89 (175)
T ss_pred CCCCHHHHHHHHHHHh----cCCEEEEEeCCC---------HHHHHhhhhhcCCceee
Confidence 4556778888888866 345566666633 23445566666766554
No 432
>PRK13695 putative NTPase; Provisional
Probab=67.87 E-value=34 Score=22.91 Aligned_cols=77 Identities=14% Similarity=0.140 Sum_probs=42.6
Q ss_pred HhhcCCEEEEEEE---CCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCC
Q psy11289 50 YMRSGEGFLLVFS---VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSA 126 (159)
Q Consensus 50 ~~~~~~~ii~v~d---~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 126 (159)
.+++++. +++| ..+..+ ..+.+.+.... ..+.|++++.+|... ......+....+..+++++
T Consensus 93 ~l~~~~~--lllDE~~~~e~~~----~~~~~~l~~~~-~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~~- 157 (174)
T PRK13695 93 ALEEADV--IIIDEIGKMELKS----PKFVKAVEEVL-DSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYELT- 157 (174)
T ss_pred ccCCCCE--EEEECCCcchhhh----HHHHHHHHHHH-hCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEEc-
Confidence 3456777 4567 222211 12333344433 256799999987532 1233444445566777774
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy11289 127 KVRINVDQAFHELVRIV 143 (159)
Q Consensus 127 ~~~~~i~~~~~~l~~~~ 143 (159)
.+|-+++.+.+++.+
T Consensus 158 --~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 158 --PENRDSLPFEILNRL 172 (174)
T ss_pred --chhhhhHHHHHHHHH
Confidence 456667777777754
No 433
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=66.61 E-value=26 Score=21.13 Aligned_cols=46 Identities=9% Similarity=0.160 Sum_probs=32.0
Q ss_pred ccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEE
Q psy11289 41 EEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMV 93 (159)
Q Consensus 41 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv 93 (159)
....+..+..+..+|.+|++.|..+-.....+... ....++|++.+
T Consensus 36 ~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~-------akk~~ip~~~~ 81 (97)
T PF10087_consen 36 EKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKA-------AKKYGIPIIYS 81 (97)
T ss_pred ccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHH-------HHHcCCcEEEE
Confidence 33344578888999999999999887766655432 12257888865
No 434
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=66.02 E-value=61 Score=25.18 Aligned_cols=93 Identities=14% Similarity=0.119 Sum_probs=48.7
Q ss_pred EEEEEEeCCCcccchHHH-HHH--h---hcCCEEEEEEECCC-hhhHHHHHHHHHHHHhhcCCC-CCcEEEEEeCCCCCC
Q psy11289 30 ARLDILDTAGQEEFSAMR-EQY--M---RSGEGFLLVFSVTD-RNSFEEIYKFHRQILRVKDRD-EFPMLMVGNKADLDH 101 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~-~~~--~---~~~~~ii~v~d~~~-~~s~~~~~~~~~~i~~~~~~~-~~p~ivv~nK~D~~~ 101 (159)
+.+.++||+|........ +.. + ....-.++|.+++. .+....+..-+.......... .-+-=+|.+|.|...
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 456779999987543322 111 2 22355688888875 444444432222221111000 012346679999532
Q ss_pred cCCCCHHHHHHHHHHcCCcEEEeCC
Q psy11289 102 QRQVSSMDAQNVARQLRIPYIECSA 126 (159)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~sa 126 (159)
..-.+..++...++|+..++.
T Consensus 296 ----~~G~~l~~~~~~~lPi~yvt~ 316 (374)
T PRK14722 296 ----NLGGVLDTVIRYKLPVHYVST 316 (374)
T ss_pred ----CccHHHHHHHHHCcCeEEEec
Confidence 234556777777888655553
No 435
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=65.72 E-value=31 Score=21.64 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=32.6
Q ss_pred HHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy11289 48 EQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKA 97 (159)
Q Consensus 48 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 97 (159)
...-..+++..+++|.+ .+..+.....+..+.... .++|+.+++++.
T Consensus 31 ~~i~~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~--~~iPVFl~~~~~ 77 (115)
T PF03709_consen 31 AIIESFTDIAAVVISWD-GEEEDEAQELLDKIRERN--FGIPVFLLAERD 77 (115)
T ss_dssp HHHHCTTTEEEEEEECH-HHHHHHHHHHHHHHHHHS--TT-EEEEEESCC
T ss_pred HHHHhCCCeeEEEEEcc-cccchhHHHHHHHHHHhC--CCCCEEEEecCC
Confidence 33444677777777766 666666677888888876 689999998755
No 436
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=65.31 E-value=43 Score=23.22 Aligned_cols=84 Identities=17% Similarity=0.105 Sum_probs=48.2
Q ss_pred EEEEEEeCCCcccchH----HHHHHh--hcCCEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCc
Q psy11289 30 ARLDILDTAGQEEFSA----MREQYM--RSGEGFLLVFSVTDRN-SFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQ 102 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~----~~~~~~--~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~ 102 (159)
+.+.|+||+|...... ....+. ...+-+++|.+++... .++.+.. +.... + +-=++.+|.|...
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~----~~~~~---~-~~~lIlTKlDet~- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALA----FYEAF---G-IDGLILTKLDETA- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHH----HHHHS---S-TCEEEEESTTSSS-
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHH----Hhhcc---c-CceEEEEeecCCC-
Confidence 3466799999865432 122222 2568899999987643 3333222 22221 1 2245599999532
Q ss_pred CCCCHHHHHHHHHHcCCcEEEeC
Q psy11289 103 RQVSSMDAQNVARQLRIPYIECS 125 (159)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~s 125 (159)
..-....++...+.|+-.+|
T Consensus 155 ---~~G~~l~~~~~~~~Pi~~it 174 (196)
T PF00448_consen 155 ---RLGALLSLAYESGLPISYIT 174 (196)
T ss_dssp ---TTHHHHHHHHHHTSEEEEEE
T ss_pred ---CcccceeHHHHhCCCeEEEE
Confidence 23456777788888865555
No 437
>PF01939 DUF91: Protein of unknown function DUF91; InterPro: IPR002793 The function of these prokaryotic proteins is unknown. Computational analysis suggests that they may form a restriction endonuclease-like fold, similar to that found in a variety of endonucleases and DNA repair enzymes [].; PDB: 2VLD_A.
Probab=64.94 E-value=23 Score=25.38 Aligned_cols=64 Identities=16% Similarity=0.334 Sum_probs=37.8
Q ss_pred CCEEEEEEECC----ChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCC
Q psy11289 54 GEGFLLVFSVT----DRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSA 126 (159)
Q Consensus 54 ~~~ii~v~d~~----~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 126 (159)
.++-.+++.+- +.+...++.+++..+.+......+-.|+|+..+. ..++.+++..|+.|+.++.
T Consensus 145 ~~G~~VVIElKR~~a~~~aV~QL~rY~~~l~~~~~~~~VRGilvA~~i~---------~~a~~ll~~~glef~~ldp 212 (228)
T PF01939_consen 145 KDGNLVVIELKRRRADRDAVEQLLRYVELLKRDPGLEPVRGILVAPSIT---------PQARELLEDRGLEFVELDP 212 (228)
T ss_dssp TTS-EEEEEE-SS-B-HHHHHHHHHHHHHHHHHH--S-EEEEEEES-B----------HHHHHHHHHHT-EEEE---
T ss_pred CCCCEEEEEEEeccCCHHHHHHHHHHHHHHhhccCCCceeEEEECCCCC---------HHHHHHHHHcCCEEEEecc
Confidence 34545555543 3466778888877777655434566788887665 4778999999999999884
No 438
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=64.11 E-value=19 Score=26.35 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 119 IPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 119 ~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
+|++..||.++.|+..+++.+...+
T Consensus 243 ~PV~~gSa~~~~Gi~~lld~i~~~~ 267 (270)
T cd01886 243 VPVLCGSAFKNKGVQPLLDAVVDYL 267 (270)
T ss_pred EEEEeCcCCCCcCHHHHHHHHHHhc
Confidence 5788899999999999999988764
No 439
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=62.53 E-value=75 Score=25.06 Aligned_cols=85 Identities=18% Similarity=0.171 Sum_probs=49.6
Q ss_pred EEEEEEeCCCcccchH----HHHHHhh---cCCEEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q psy11289 30 ARLDILDTAGQEEFSA----MREQYMR---SGEGFLLVFSVTD-RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDH 101 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~----~~~~~~~---~~~~ii~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 101 (159)
+.+.|.||+|...... ....++. ...-+.+|.+.+- ...+..+. ..+.. .+ +--++.||.|...
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~---~~f~~----~~-~~~vI~TKlDet~ 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIY---KHFSR----LP-LDGLIFTKLDETS 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHH---HHhCC----CC-CCEEEEecccccc
Confidence 4567799999865531 2333333 2346677888754 33444432 22221 11 2357799999532
Q ss_pred cCCCCHHHHHHHHHHcCCcEEEeCC
Q psy11289 102 QRQVSSMDAQNVARQLRIPYIECSA 126 (159)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~sa 126 (159)
..-.+..++...++|+..++.
T Consensus 372 ----~~G~i~~~~~~~~lPv~yit~ 392 (424)
T PRK05703 372 ----SLGSILSLLIESGLPISYLTN 392 (424)
T ss_pred ----cccHHHHHHHHHCCCEEEEeC
Confidence 234567788888998766654
No 440
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=61.51 E-value=60 Score=23.54 Aligned_cols=47 Identities=9% Similarity=0.142 Sum_probs=32.4
Q ss_pred HhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy11289 50 YMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKA 97 (159)
Q Consensus 50 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 97 (159)
....+|-++.+|.+.+...-.++.+-+..+.++.. +++|+.++-|-.
T Consensus 151 aAA~adfVi~~YNP~s~~R~~~~~~a~eil~~~r~-~~tpVgivrnag 197 (249)
T COG1010 151 AAAEADFVIALYNPISKRRPEQLGRAFEILREHRS-PDTPVGIVRNAG 197 (249)
T ss_pred HHhhCCEEEEEECCccccchHHHHHHHHHHHHhcC-CCCcEEEEecCC
Confidence 34678999999998776544444444555556543 688999887665
No 441
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=61.46 E-value=61 Score=23.62 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=30.4
Q ss_pred EEEEEEeCCCcccchHH-HHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 30 ARLDILDTAGQEEFSAM-REQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~-~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+.+.|+||+|..-...+ ....+.-||.+|++..+ ++.++..+...++.+...
T Consensus 117 yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p-~~~si~~~~~ll~~i~~~ 169 (279)
T PRK13230 117 PDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTC-DPMAIYAANNICKGIKRF 169 (279)
T ss_pred CCEEEEecCCccccCCccccccccccceEEEeccc-hHHHHHHHHHHHHHHHHH
Confidence 55677999874321111 11112347999998877 566777766555555444
No 442
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=61.36 E-value=13 Score=25.22 Aligned_cols=64 Identities=22% Similarity=0.262 Sum_probs=34.4
Q ss_pred EEEEeCCCcccchHH--H-HHH--hhcCCEEEEEEECCChhhHHHHHHH-HHHHHhhcCCCCCcEEEEEeCCCCCCc
Q psy11289 32 LDILDTAGQEEFSAM--R-EQY--MRSGEGFLLVFSVTDRNSFEEIYKF-HRQILRVKDRDEFPMLMVGNKADLDHQ 102 (159)
Q Consensus 32 ~~l~D~~g~~~~~~~--~-~~~--~~~~~~ii~v~d~~~~~s~~~~~~~-~~~i~~~~~~~~~p~ivv~nK~D~~~~ 102 (159)
..+..+.|......+ . ..+ .-..+.++.|+|+.+-......... ..++ +. .-+++.||.|+...
T Consensus 87 ~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi-~~------ADvIvlnK~D~~~~ 156 (178)
T PF02492_consen 87 RIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQI-AF------ADVIVLNKIDLVSD 156 (178)
T ss_dssp EEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHH-CT-------SEEEEE-GGGHHH
T ss_pred EEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcc-hh------cCEEEEeccccCCh
Confidence 344677776554443 0 111 1245899999999775333333322 2233 21 22788999998653
No 443
>PLN02759 Formate--tetrahydrofolate ligase
Probab=61.19 E-value=59 Score=26.97 Aligned_cols=57 Identities=7% Similarity=-0.039 Sum_probs=41.5
Q ss_pred CCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcC-CcEEEeCCC--CCCCHHHHHHHHHHHHH
Q psy11289 86 DEFPMLMVGNKADLDHQRQVSSMDAQNVARQLR-IPYIECSAK--VRINVDQAFHELVRIVL 144 (159)
Q Consensus 86 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~--~~~~i~~~~~~l~~~~~ 144 (159)
-+.|+||..|+.....+. ..+..+++|.+.| +++..+..- =|.|-.++-+.+++.+.
T Consensus 449 fg~pvVVaiN~F~~Dt~~--Ei~~v~~~~~~~ga~~~~~~~~wa~GGeGa~eLA~~Vv~a~e 508 (637)
T PLN02759 449 YGVNVVVAINMFATDTEA--ELEAVRQAALAAGAFDAVLCTHHAHGGKGAVDLGEAVQKACE 508 (637)
T ss_pred cCCCeEEEecCCCCCCHH--HHHHHHHHHHHcCCCcEEEechhhcccHHHHHHHHHHHHHHh
Confidence 478999999998643222 2456678899999 476666544 56888888888887765
No 444
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=60.64 E-value=6.4 Score=25.33 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=26.9
Q ss_pred CCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCC
Q psy11289 86 DEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAK 127 (159)
Q Consensus 86 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 127 (159)
.+.|++++|.-.... -..++..++++.+++|++.+-.-
T Consensus 11 A~rP~il~G~g~~~~----~a~~~l~~lae~~~~Pv~~t~~~ 48 (137)
T PF00205_consen 11 AKRPVILAGRGARRS----GAAEELRELAEKLGIPVATTPMG 48 (137)
T ss_dssp -SSEEEEE-HHHHHT----TCHHHHHHHHHHHTSEEEEEGGG
T ss_pred CCCEEEEEcCCcChh----hHHHHHHHHHHHHCCCEEecCcc
Confidence 567999999765522 23678899999999998776443
No 445
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=60.52 E-value=64 Score=25.92 Aligned_cols=58 Identities=12% Similarity=0.018 Sum_probs=42.1
Q ss_pred CCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEe--CCCCCCCHHHHHHHHHHHHHh
Q psy11289 86 DEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIEC--SAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 86 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~--sa~~~~~i~~~~~~l~~~~~~ 145 (159)
-++|++|..||.-.. .+...+....++.++|+++..+ =++-|.|-.++-+.++..+.+
T Consensus 368 fgvp~VVAIN~F~tD--t~~Ei~~i~~~~~~~gv~~~ls~vwakGg~Gg~eLA~kVv~~~~~ 427 (554)
T COG2759 368 FGVPVVVAINKFPTD--TEAEIAAIEKLCEEHGVEVALSEVWAKGGEGGIELAKKVVEAIEQ 427 (554)
T ss_pred cCCCeEEEeccCCCC--CHHHHHHHHHHHHHcCCceeehhhhhccCccHHHHHHHHHHHHhC
Confidence 478999999998632 2222455678899999875544 456678888988888888765
No 446
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=59.26 E-value=90 Score=25.74 Aligned_cols=57 Identities=11% Similarity=-0.038 Sum_probs=40.5
Q ss_pred CCCcEEEEEeCCCCCCcCCCCHHHHHHHHHH-cCCcEEEeCC--CCCCCHHHHHHHHHHHHH
Q psy11289 86 DEFPMLMVGNKADLDHQRQVSSMDAQNVARQ-LRIPYIECSA--KVRINVDQAFHELVRIVL 144 (159)
Q Consensus 86 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa--~~~~~i~~~~~~l~~~~~ 144 (159)
-++|+||..|+..-..+. ..+..+++|.+ .++++..+.. +=|.|-.++-+.+++.+.
T Consensus 392 fg~pvVVaiN~F~~Dt~~--Ei~~~~~~~~~~~~~~~~~~~~wa~GGeGa~eLA~~Vv~a~e 451 (578)
T PRK13506 392 YGLPVVVAINRFPTDTDE--ELEWLKEAVLLTGAFGCEISEAFAQGGEGATALAQAVVRACE 451 (578)
T ss_pred cCCCeEEEecCCCCCCHH--HHHHHHHHHHHcCCCcEEEechhhccchhHHHHHHHHHHHhh
Confidence 578999999998643222 23556778888 6777666554 456888888888887765
No 447
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=59.23 E-value=12 Score=23.58 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=16.1
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHcC-CcEEEeCCC
Q psy11289 93 VGNKADLDHQRQVSSMDAQNVARQLR-IPYIECSAK 127 (159)
Q Consensus 93 v~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~ 127 (159)
++||+|++. +.+....+.+.+. .++++|||.
T Consensus 1 AaNK~D~~~----a~~ni~kl~~~~~~~~vVp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPA----ADENIEKLKEKYPDEPVVPTSAA 32 (109)
T ss_dssp EEE-GGG-S-----HHHHHHHHHHHTT-EEEEE-HH
T ss_pred CCccccccc----cHhHHHHHHHhCCCCceeeccHH
Confidence 579999643 2445555555553 567888873
No 448
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=57.79 E-value=74 Score=23.44 Aligned_cols=85 Identities=15% Similarity=0.081 Sum_probs=48.5
Q ss_pred EEEEEEeCCCcccchH-HHH---HHh--hcCCEEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCc
Q psy11289 30 ARLDILDTAGQEEFSA-MRE---QYM--RSGEGFLLVFSVTD-RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQ 102 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~-~~~---~~~--~~~~~ii~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~ 102 (159)
+.+-+.||+|...... ... .++ ...+-+++|.|++. .+.. ..+...+.. -.+-=++.+|.|....
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~---~~~~~~f~~-----~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM---IEIITNFKD-----IHIDGIVFTKFDETAS 226 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHH---HHHHHHhCC-----CCCCEEEEEeecCCCC
Confidence 4566799999874322 122 222 24567899998863 3233 223333322 1234567999996432
Q ss_pred CCCCHHHHHHHHHHcCCcEEEeCC
Q psy11289 103 RQVSSMDAQNVARQLRIPYIECSA 126 (159)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~sa 126 (159)
.-.+..++...++|+..++.
T Consensus 227 ----~G~~l~~~~~~~~Pi~~it~ 246 (270)
T PRK06731 227 ----SGELLKIPAVSSAPIVLMTD 246 (270)
T ss_pred ----ccHHHHHHHHHCcCEEEEeC
Confidence 23456677778888666553
No 449
>TIGR03488 cas_Cas5p CRISPR-associated protein, Cas5p family. CC Members of this protein family are cas, or CRISPR-associated, proteins. The two sequences in the alignment seed are found within cas gene clusters that are adjacent to CRISPR DNA repeats in two members of the order Bacteroidales, Porphyromonas gingivalis W83 and Bacteroides forsythus ATCC 43037. This cas protein family is unique to the Pgingi (Porphyromonas gingivalis) subtype, but shows some sequence similarity to genes of the Cas5 type (see TIGR02593).
Probab=57.64 E-value=3.6 Score=27.92 Aligned_cols=79 Identities=13% Similarity=0.204 Sum_probs=47.1
Q ss_pred EeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHH
Q psy11289 35 LDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVA 114 (159)
Q Consensus 35 ~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 114 (159)
.|+..---|..+|...++.+|+=.+-+..+.--.+.-+ .++--.++-|+.|...+..+.......+.
T Consensus 108 i~~~~~~ffndlwkr~frr~dag~ih~~gtenidy~~i-------------~dk~k~mcener~~e~~dk~d~~~le~f~ 174 (237)
T TIGR03488 108 IDFDEPCFFNDLWKRAFRRADAGKIHFGGTENIDYRLI-------------MDKFKFMCENERDEENEDKIDNHALEKFF 174 (237)
T ss_pred cccCCcchHhHHHHHHHhhccCceecCCCcccceeeeh-------------hhhhhhhcccccchhhhhhhhhHHHHHHH
Confidence 56666666789999999999987666666543222211 12223566788887766666555555555
Q ss_pred HHc--CCcEEEeCC
Q psy11289 115 RQL--RIPYIECSA 126 (159)
Q Consensus 115 ~~~--~~~~~~~sa 126 (159)
++. .++++.+..
T Consensus 175 kenid~~~~fyatp 188 (237)
T TIGR03488 175 KENIDFFPFFYATP 188 (237)
T ss_pred HhcccceeeeeecC
Confidence 543 244444433
No 450
>PRK13660 hypothetical protein; Provisional
Probab=57.36 E-value=61 Score=22.38 Aligned_cols=15 Identities=27% Similarity=0.581 Sum_probs=8.4
Q ss_pred hhcCCEEEEEEECCC
Q psy11289 51 MRSGEGFLLVFSVTD 65 (159)
Q Consensus 51 ~~~~~~ii~v~d~~~ 65 (159)
+.++|++|.+||...
T Consensus 127 v~~sd~~i~~YD~e~ 141 (182)
T PRK13660 127 LEHTDGALLVYDEEN 141 (182)
T ss_pred HHccCeEEEEEcCCC
Confidence 455566666666544
No 451
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=56.36 E-value=49 Score=20.94 Aligned_cols=95 Identities=19% Similarity=0.361 Sum_probs=54.8
Q ss_pred EEEEEeCCCcccchHHHHHHhhcCCEEEE-EEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHH
Q psy11289 31 RLDILDTAGQEEFSAMREQYMRSGEGFLL-VFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMD 109 (159)
Q Consensus 31 ~~~l~D~~g~~~~~~~~~~~~~~~~~ii~-v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 109 (159)
.+.+.|++.-.+ ++++-..++- .+...+ +....+..++..+.+ .+..-+++...... ..++ ++
T Consensus 27 ~v~v~e~~d~~~-------~l~~gElvlttg~~~~~-~~~~~~~~~i~~L~~----~~~agL~i~~~~~~---~~iP-~~ 90 (123)
T PF07905_consen 27 WVHVMEAPDPSD-------WLRGGELVLTTGYALRD-DDEEELREFIRELAE----KGAAGLGIKTGRYL---DEIP-EE 90 (123)
T ss_pred EEEEeecCCHHH-------hCCCCeEEEECCcccCC-CCHHHHHHHHHHHHH----CCCeEEEEeccCcc---ccCC-HH
Confidence 355688874433 2444333333 223322 112234455555544 34455555443222 2443 58
Q ss_pred HHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 110 AQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 110 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
..++|.++++|++++.. .....++.+.+.+++
T Consensus 91 ~i~~A~~~~lPli~ip~--~~~f~~I~~~v~~~I 122 (123)
T PF07905_consen 91 IIELADELGLPLIEIPW--EVPFSDITREVMRAI 122 (123)
T ss_pred HHHHHHHcCCCEEEeCC--CCCHHHHHHHHHHHh
Confidence 88999999999999988 457778877777665
No 452
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=55.66 E-value=52 Score=21.04 Aligned_cols=79 Identities=11% Similarity=0.084 Sum_probs=43.5
Q ss_pred CcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcC
Q psy11289 39 GQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLR 118 (159)
Q Consensus 39 g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 118 (159)
|.-...-+...+.++||+|+++-.......+..-..|...- .+..++..++.|
T Consensus 38 Grv~~~~il~Af~~GADGV~V~gC~~g~Ch~~~Gn~~a~~R---------------------------v~~~k~~L~~~G 90 (124)
T PF02662_consen 38 GRVDPEFILRAFEKGADGVLVAGCHPGDCHYREGNYRAEKR---------------------------VERLKKLLEELG 90 (124)
T ss_pred CccCHHHHHHHHHcCCCEEEEeCCCCCCCCcchhhHHHHHH---------------------------HHHHHHHHHHcC
Confidence 44444456677778888888865543332222111110000 123334444444
Q ss_pred C-----cEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 119 I-----PYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 119 ~-----~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
+ .+..+|+-++..+.+.++.+.+.+.
T Consensus 91 i~~eRv~~~~~~~~~~~~fa~~~~~f~~~i~ 121 (124)
T PF02662_consen 91 IEPERVRLYWISAPEGKRFAEIVNEFTERIK 121 (124)
T ss_pred CChhHeEEEEeCcccHHHHHHHHHHHHHHHH
Confidence 3 3677888888777777777777664
No 453
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=55.58 E-value=83 Score=23.31 Aligned_cols=68 Identities=10% Similarity=0.103 Sum_probs=38.7
Q ss_pred eEEEEEEeCCCcccchHHHH-HHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEEeCC
Q psy11289 29 PARLDILDTAGQEEFSAMRE-QYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM-LMVGNKA 97 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~-~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~ 97 (159)
.+-+.|+||+|.--...+.. ....-+|.+|++... ++.|+..+...++.+.+.....+... -++.|+.
T Consensus 119 ~yD~IlID~~~~~~~nal~~~~~~~aAD~vIIPv~p-e~~Sl~gl~~l~~~i~~~~~~~~l~~~gIV~N~~ 188 (295)
T PRK13234 119 DVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSG-EMMALYAANNIAKGILKYANSGGVRLGGLICNER 188 (295)
T ss_pred cCCEEEEEcCCCceECCCccccccccCceEEEecCc-cHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 45567799976422111111 111368988888876 56677777777666666543233433 3667753
No 454
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=55.44 E-value=69 Score=22.40 Aligned_cols=67 Identities=13% Similarity=0.006 Sum_probs=39.0
Q ss_pred EEEEEEeCCCcccc-hHHHHHHhhc--CCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 30 ARLDILDTAGQEEF-SAMREQYMRS--GEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 30 ~~~~l~D~~g~~~~-~~~~~~~~~~--~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
+.+.++|+|..... ..+....+.+ ++.+++|...+ ..+...+.+.+..+.... . ...-+|.|+....
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~-~~s~~~~~~~l~~l~~~~--~-~~~glVlN~~~~~ 183 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPE-KLPLYETERAITELALYG--I-PVDAVVVNRVLPA 183 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCC-ccHHHHHHHHHHHHHHCC--C-CCCEEEEeCCcCc
Confidence 56677999965322 2222333333 47888888765 556666666666665532 1 1335778888643
No 455
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=55.35 E-value=16 Score=27.00 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=26.1
Q ss_pred CCcEEEEEeCCC--CCCcCCCCHHHHHHHHHHcCCcEEEeCCCC
Q psy11289 87 EFPMLMVGNKAD--LDHQRQVSSMDAQNVARQLRIPYIECSAKV 128 (159)
Q Consensus 87 ~~p~ivv~nK~D--~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 128 (159)
.+|+++++|+.| +..... ........+...+.+++.+||.-
T Consensus 195 ~KP~i~v~N~~e~d~~~~~~-~~~~~~~~~~~~~~~~i~~sa~~ 237 (274)
T cd01900 195 AKPVLYVANVSEDDLANGNN-KVLKVREIAAKEGAEVIPISAKI 237 (274)
T ss_pred cCCceeecccCHHHhccccH-HHHHHHHHHhcCCCeEEEeeHHH
Confidence 489999999988 321111 12233445556678899999863
No 456
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=54.93 E-value=1.1e+02 Score=24.39 Aligned_cols=86 Identities=15% Similarity=0.109 Sum_probs=48.2
Q ss_pred EEEEEEeCCCcccchH--H--HHHHh--hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcC
Q psy11289 30 ARLDILDTAGQEEFSA--M--REQYM--RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQR 103 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~--~--~~~~~--~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 103 (159)
+.+.|.||+|...... + ...++ ...+.+++|.|++-. .+++..+...+... ..-=+|.+|.|...
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~-----~idglI~TKLDET~-- 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI-----HIDGIVFTKFDETA-- 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC-----CCCEEEEEcccCCC--
Confidence 4566799999865322 1 22222 245778899887532 22223333333221 12346789999643
Q ss_pred CCCHHHHHHHHHHcCCcEEEeCC
Q psy11289 104 QVSSMDAQNVARQLRIPYIECSA 126 (159)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~sa 126 (159)
..-.+..++...++|+..++.
T Consensus 392 --k~G~iLni~~~~~lPIsyit~ 412 (436)
T PRK11889 392 --SSGELLKIPAVSSAPIVLMTD 412 (436)
T ss_pred --CccHHHHHHHHHCcCEEEEeC
Confidence 233456777778888665543
No 457
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=54.62 E-value=58 Score=27.63 Aligned_cols=67 Identities=18% Similarity=0.014 Sum_probs=42.6
Q ss_pred eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
.+.+.++|+|....... .......+|++++|... +..+...+...++.+.... ....-+|.|+.|..
T Consensus 655 ~yD~IiID~pp~~~~~d-~~~l~~~~D~vl~v~~~-~~~~~~~~~~~~~~l~~~~---~~~~GvvlN~~~~~ 721 (754)
T TIGR01005 655 YSDCVVVDVGTADPVRD-MRAAARLAIIMLLVTAY-DRVVVECGRADAQGISRLN---GEVTGVFLNMLDPN 721 (754)
T ss_pred hCCEEEEcCCCcchhHH-HHHhhhhCCeEEEEEEe-CceeHHHHHHHHHHHHhcC---CceEEEEecCCChh
Confidence 35567799998754322 33445578999998875 5555666666666665432 12345888999853
No 458
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=54.24 E-value=12 Score=28.87 Aligned_cols=37 Identities=19% Similarity=0.397 Sum_probs=27.1
Q ss_pred eEEEEEEeCCCcccchH----HHHHH---hhcCCEEEEEEECCC
Q psy11289 29 PARLDILDTAGQEEFSA----MREQY---MRSGEGFLLVFSVTD 65 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~----~~~~~---~~~~~~ii~v~d~~~ 65 (159)
...++|.|++|.-+-.+ +...| ++.+|+++.|++...
T Consensus 66 ~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 66 PAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred eeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 45688899998865432 44444 588999999998863
No 459
>PRK13556 azoreductase; Provisional
Probab=54.13 E-value=72 Score=22.18 Aligned_cols=46 Identities=4% Similarity=0.034 Sum_probs=31.3
Q ss_pred HhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc------------CCCCCcEEEEEe
Q psy11289 50 YMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK------------DRDEFPMLMVGN 95 (159)
Q Consensus 50 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~------------~~~~~p~ivv~n 95 (159)
.++.||++|+++.+-+-.-=-.++.|+..+.... ...+++++++.+
T Consensus 86 ~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~t 143 (208)
T PRK13556 86 QFLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNA 143 (208)
T ss_pred HHHHCCEEEEeccccccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEe
Confidence 3678999999998876433345567777777642 124677777765
No 460
>KOG1487|consensus
Probab=54.05 E-value=17 Score=26.87 Aligned_cols=50 Identities=22% Similarity=0.222 Sum_probs=35.2
Q ss_pred CCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCc-EEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 87 EFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIP-YIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 87 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
.+|.+.+.||+|...-++. --.+.++ .+++||-.+.|++++++-+-..+.
T Consensus 231 yVp~iyvLNkIdsISiEEL--------dii~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 231 YVPCIYVLNKIDSISIEEL--------DIIYTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred eeeeeeeecccceeeeecc--------ceeeeccceeecccccccchHHHHHHHhhcch
Confidence 4788999999985422221 1123444 799999999999999988876553
No 461
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=53.84 E-value=13 Score=30.19 Aligned_cols=57 Identities=11% Similarity=0.026 Sum_probs=34.7
Q ss_pred CCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCC--CCCCCHHHHHHHHHHHHH
Q psy11289 86 DEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSA--KVRINVDQAFHELVRIVL 144 (159)
Q Consensus 86 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa--~~~~~i~~~~~~l~~~~~ 144 (159)
-++|+||..|+.....+.+ .+..+++|++.|+++..+.. +=|.|-.++-+.+++.+.
T Consensus 370 fGvpvVVAIN~F~tDT~aE--i~~I~~~~~~~Gv~~avs~~wa~GGeGa~eLA~~Vv~a~e 428 (557)
T PF01268_consen 370 FGVPVVVAINRFPTDTDAE--IELIRELCEELGVRAAVSEHWAKGGEGAVELAEAVVEACE 428 (557)
T ss_dssp TT--EEEEEE--TTS-HHH--HHHHHHHCCCCCEEEEEC-HHHHGGGGCHHHHHHHHHH-H
T ss_pred cCCCeEEEecCCCCCCHHH--HHHHHHHHHhCCCCEEEechhhcccccHHHHHHHHHHHhh
Confidence 5789999999986432222 34556777788888555543 346788888888888873
No 462
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=53.70 E-value=1.3e+02 Score=25.13 Aligned_cols=57 Identities=14% Similarity=0.054 Sum_probs=40.6
Q ss_pred CCCcEEEEEeCCCCCCcCCCCHHHHHHHHH-HcC-CcEEEeCC--CCCCCHHHHHHHHHHHHH
Q psy11289 86 DEFPMLMVGNKADLDHQRQVSSMDAQNVAR-QLR-IPYIECSA--KVRINVDQAFHELVRIVL 144 (159)
Q Consensus 86 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~-~~~~~~sa--~~~~~i~~~~~~l~~~~~ 144 (159)
-++|+||..|+.....+. ..+..+++|. +.| +++..+.. +=|.|-.++-+.+++.+.
T Consensus 436 fgvpvVVAIN~F~tDT~~--Ei~~i~~~~~~~~ga~~~~~s~~~a~GG~Ga~eLA~~Vv~a~~ 496 (625)
T PTZ00386 436 FGVPVVVALNKFSTDTDA--ELELVKELALQEGGAADVVVTDHWAKGGAGAVDLAQALIRVTE 496 (625)
T ss_pred cCCCeEEEecCCCCCCHH--HHHHHHHHHHHhcCCccEEEechhhccchhHHHHHHHHHHHHh
Confidence 578999999998643222 2455678888 888 57666554 456788888888887774
No 463
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=53.03 E-value=63 Score=22.23 Aligned_cols=57 Identities=18% Similarity=0.336 Sum_probs=29.6
Q ss_pred eCCCcccchHHHHHHhhcCCEEEEEEEC--C-ChhhHHH-HHHHHHHHHhhcCCCCCcEEEEE
Q psy11289 36 DTAGQEEFSAMREQYMRSGEGFLLVFSV--T-DRNSFEE-IYKFHRQILRVKDRDEFPMLMVG 94 (159)
Q Consensus 36 D~~g~~~~~~~~~~~~~~~~~ii~v~d~--~-~~~s~~~-~~~~~~~i~~~~~~~~~p~ivv~ 94 (159)
..+|.-+.....-.++...++-+++.|. + +++.|.. +..++..+.... +++|++++-
T Consensus 40 GfsG~~~le~~~a~~ia~~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~h--P~tPIllv~ 100 (178)
T PF14606_consen 40 GFSGNGKLEPEVADLIAEIDADLIVLDCGPNMSPEEFRERLDGFVKTIREAH--PDTPILLVS 100 (178)
T ss_dssp E-TCCCS--HHHHHHHHHS--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT---SSS-EEEEE
T ss_pred eecCccccCHHHHHHHhcCCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEe
Confidence 4566666666666666544444444444 3 3444543 446666666654 788999875
No 464
>KOG1534|consensus
Probab=52.53 E-value=71 Score=23.03 Aligned_cols=25 Identities=0% Similarity=0.123 Sum_probs=18.0
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 119 IPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 119 ~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
+.+++....+.+++..++..|-.++
T Consensus 226 v~FlPl~~~~eeSi~~iL~~ID~ai 250 (273)
T KOG1534|consen 226 VNFLPLDSSDEESINIILSYIDDAI 250 (273)
T ss_pred eeeeecCCCCHHHHHHHHHHHHHHH
Confidence 4578888888888888777665544
No 465
>PRK11670 antiporter inner membrane protein; Provisional
Probab=52.48 E-value=1.1e+02 Score=23.70 Aligned_cols=65 Identities=17% Similarity=0.048 Sum_probs=35.0
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCC
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPML-MVGNKADL 99 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~ 99 (159)
+.+-+.|+|..-....+.-..+-.+|++++|...... ++.++.+-+..+.+ .+.|++ +|.|+.+.
T Consensus 216 yDyvIID~PPg~gd~~l~~~~l~aad~viiV~tp~~~-s~~da~~~i~~~~~----~~~~ilGiV~Nm~~~ 281 (369)
T PRK11670 216 LDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDI-ALIDAKKGIVMFEK----VEVPVLGIVENMSMH 281 (369)
T ss_pred CCEEEEeCCCCCchHHHHHhhhccCCeEEEEecCchh-HHHHHHHHHHHHhc----cCCCeEEEEEcCCcc
Confidence 4456689885422111222222357998888877543 34444443333322 456765 67888764
No 466
>PF10036 RLL: Putative carnitine deficiency-associated protein; InterPro: IPR019265 This family of proteins conserved from nematodes to humans is of approximately 250 amino acids. It is purported to be carnitine deficiency-associated protein but this could not be confirmed. It carries a characteristic RLL sequence-motif. The function is unknown.
Probab=51.10 E-value=41 Score=24.42 Aligned_cols=71 Identities=13% Similarity=0.240 Sum_probs=43.8
Q ss_pred EECCChhhHHHHHHHHHH--HHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHH
Q psy11289 61 FSVTDRNSFEEIYKFHRQ--ILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHE 138 (159)
Q Consensus 61 ~d~~~~~s~~~~~~~~~~--i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 138 (159)
++..++..|..+--|+.. |..+.....-+.- +. .... ..+....+++.++||+ +...-.++++|
T Consensus 17 ~n~~d~~~fr~lVvWLEDqKIR~Y~iedR~~LR------~i-~s~~-W~~~~~kYl~dl~cP~------~~~~~~~~ldW 82 (249)
T PF10036_consen 17 FNIDDEEEFRSLVVWLEDQKIRHYKIEDREKLR------NI-DSSD-WPKAFEKYLKDLGCPF------SSESRQEQLDW 82 (249)
T ss_pred CCCCCHHHHHHHHHHHhhhhhccCCHhhHHHHh------cC-Ccch-HHHHHHHHHHhcCCCC------cchhHHHHHHH
Confidence 356788999999999877 5544321100100 11 1111 3556678899999998 44556778888
Q ss_pred HHHHHHh
Q psy11289 139 LVRIVLL 145 (159)
Q Consensus 139 l~~~~~~ 145 (159)
++..++.
T Consensus 83 LL~~AV~ 89 (249)
T PF10036_consen 83 LLGLAVR 89 (249)
T ss_pred HHHHHHH
Confidence 8766653
No 467
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=51.04 E-value=41 Score=22.73 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=26.4
Q ss_pred CCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeC
Q psy11289 86 DEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125 (159)
Q Consensus 86 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 125 (159)
...|++++|...-. .-..++..++++..++|++.+-
T Consensus 27 AKRPvIivG~ga~~----~~a~e~l~~laEklgiPVvtT~ 62 (162)
T TIGR00315 27 AKRPLLIVGPENLE----DEEKELIVKFIEKFDLPVVATA 62 (162)
T ss_pred CCCcEEEECCCcCc----ccHHHHHHHHHHHHCCCEEEcC
Confidence 56799999976631 1135678899999999987654
No 468
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=50.92 E-value=66 Score=25.11 Aligned_cols=56 Identities=16% Similarity=0.337 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHH---HHHHHHHcCCcEEEeCCCC
Q psy11289 69 FEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMD---AQNVARQLRIPYIECSAKV 128 (159)
Q Consensus 69 ~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~sa~~ 128 (159)
++.+++.+..+ +..++|.|++.--+......+++.+. ..++|+++++|++.=+++-
T Consensus 171 ~~kLe~lidev----G~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~Rf 229 (471)
T COG3033 171 LEKLERLIDEV----GADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARF 229 (471)
T ss_pred HHHHHHHHHHh----CcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhh
Confidence 45555544444 34689998876666666667776544 4678889999988776653
No 469
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=50.68 E-value=94 Score=22.54 Aligned_cols=68 Identities=13% Similarity=0.098 Sum_probs=38.4
Q ss_pred eEEEEEEeCCCcccchHH-HHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEEeCC
Q psy11289 29 PARLDILDTAGQEEFSAM-REQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPML-MVGNKA 97 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~-~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~ 97 (159)
.+-+.|+||+|..-...+ ....+.-+|.+|++... ++.|+..+...++.+.+.....+..+. ++.|+.
T Consensus 117 ~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~-e~~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~ 186 (274)
T PRK13235 117 NLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSG-EMMAMYAANNICKGILKYADAGGVRLGGLICNSR 186 (274)
T ss_pred CCCEEEEECCCCCccCCcccccccccccEEEEEecC-chhHHHHHHHHHHHHHHHhhcCCCceeEEEEecC
Confidence 356677999765321111 11111257888888854 577777777666655554322445443 566764
No 470
>KOG2052|consensus
Probab=50.50 E-value=25 Score=28.02 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=39.0
Q ss_pred EEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHH
Q psy11289 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQ 78 (159)
Q Consensus 31 ~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~ 78 (159)
++++..+.|.-||...|...+++-++.+=+|...++.|+-.-.+.++-
T Consensus 212 qI~L~e~IGkGRyGEVwrG~wrGe~VAVKiF~srdE~SWfrEtEIYqT 259 (513)
T KOG2052|consen 212 QIVLQEIIGKGRFGEVWRGRWRGEDVAVKIFSSRDERSWFRETEIYQT 259 (513)
T ss_pred eeEEEEEecCccccceeeccccCCceEEEEecccchhhhhhHHHHHHH
Confidence 356699999999999999999999999999999998775443444443
No 471
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=50.40 E-value=15 Score=26.89 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 119 IPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 119 ~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
+|++..||.++.|+..+++.+...+
T Consensus 240 ~Pv~~gsa~~~~Gv~~Lld~i~~~~ 264 (267)
T cd04169 240 TPVFFGSALNNFGVQELLDALVDLA 264 (267)
T ss_pred EEEEecccccCcCHHHHHHHHHHHC
Confidence 5788889999999999999998765
No 472
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=50.29 E-value=1.1e+02 Score=23.37 Aligned_cols=93 Identities=17% Similarity=0.210 Sum_probs=52.0
Q ss_pred eEEEEEEeCCCcccchH-HHH------HHhhcCCE-----EEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCCcEEEEEe
Q psy11289 29 PARLDILDTAGQEEFSA-MRE------QYMRSGEG-----FLLVFSVTDR-NSFEEIYKFHRQILRVKDRDEFPMLMVGN 95 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~-~~~------~~~~~~~~-----ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~ivv~n 95 (159)
.+.+-|.||+|.-.-.. ++. ...+..+. ++++.|++-. +++.+++. ++.... + -=++.+
T Consensus 221 ~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~-F~eav~------l-~GiIlT 292 (340)
T COG0552 221 GIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKI-FNEAVG------L-DGIILT 292 (340)
T ss_pred CCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHH-HHHhcC------C-ceEEEE
Confidence 34566799999854322 221 22334344 8888899865 45555433 222211 1 235689
Q ss_pred CCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHH
Q psy11289 96 KADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQA 135 (159)
Q Consensus 96 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 135 (159)
|.|....-.+ ....+.++++|+..+.. |++++++
T Consensus 293 KlDgtAKGG~----il~I~~~l~~PI~fiGv--GE~~~DL 326 (340)
T COG0552 293 KLDGTAKGGI----ILSIAYELGIPIKFIGV--GEGYDDL 326 (340)
T ss_pred ecccCCCcce----eeeHHHHhCCCEEEEeC--CCChhhc
Confidence 9996543332 23567788999776654 3344444
No 473
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=49.86 E-value=85 Score=21.79 Aligned_cols=70 Identities=13% Similarity=0.226 Sum_probs=46.8
Q ss_pred hhcCCEEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeC
Q psy11289 51 MRSGEGFLLVFSVTDR--NSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125 (159)
Q Consensus 51 ~~~~~~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 125 (159)
-.+||.+-++.+.... ..++...+.+..+.+.+. +.|+.++.....+.. + ....+-+.+.+.|..++.+|
T Consensus 80 ~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkvI~e~~~l~~-~--~i~~a~ria~e~GaD~IKTs 151 (203)
T cd00959 80 ADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACG--GAPLKVILETGLLTD-E--EIIKACEIAIEAGADFIKTS 151 (203)
T ss_pred HcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEEEEecCCCCH-H--HHHHHHHHHHHhCCCEEEcC
Confidence 3489999999988632 234555666777777663 678777666655421 1 13444567778899999998
No 474
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=48.75 E-value=88 Score=21.63 Aligned_cols=33 Identities=24% Similarity=0.166 Sum_probs=18.7
Q ss_pred EEEEeCCCcccchHHHHHHhhcCCEEEEEEECCC
Q psy11289 32 LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65 (159)
Q Consensus 32 ~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~ 65 (159)
+.++|+|...... ....+...+|.+|+|.....
T Consensus 151 ~IiiD~pp~~~~~-~~~~l~~~aD~viiV~~~~~ 183 (207)
T TIGR03018 151 IIIIDTPPLLVFS-EARALARLVGQIVLVVEEGR 183 (207)
T ss_pred EEEEECCCCcchh-HHHHHHHhCCEEEEEEECCC
Confidence 4557777554321 23344556777777776643
No 475
>KOG1249|consensus
Probab=48.70 E-value=36 Score=27.69 Aligned_cols=83 Identities=16% Similarity=0.043 Sum_probs=44.7
Q ss_pred hcCCEEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCC-CCHHHHHHHHHHcC----------C
Q psy11289 52 RSGEGFLLVFSVTD-RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQ-VSSMDAQNVARQLR----------I 119 (159)
Q Consensus 52 ~~~~~ii~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~----------~ 119 (159)
++-..+..+.|.++ +++. ...+...... .-.++.+||.|+...+. ...-.........+ .
T Consensus 109 ~~~~~~~~vvd~~d~p~~i------~p~~~~~v~~--~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~ 180 (572)
T KOG1249|consen 109 ENPALARKVVDLSDEPCSI------DPLLTNDVGS--PRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLN 180 (572)
T ss_pred hcccceEEeeecccCcccc------ccchhhcccC--CceEeeccccccccccccchHHHHHHhhcccceeecccccCCC
Confidence 34355566666665 3422 2333333322 23688999999865443 11111111111111 1
Q ss_pred ------cEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 120 ------PYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 120 ------~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
....+++++|.|+.+++-.+...
T Consensus 181 p~~~f~~~~~~r~ktgyg~eeLI~~lvd~ 209 (572)
T KOG1249|consen 181 PDFDFDHVDLIRAKTGYGIEELIVMLVDI 209 (572)
T ss_pred cccchhhhhhhhhhhcccHHHHHHHhhhe
Confidence 14568899999999988777654
No 476
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=48.37 E-value=44 Score=21.59 Aligned_cols=40 Identities=13% Similarity=0.358 Sum_probs=28.7
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCCcEEE
Q psy11289 53 SGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD-RDEFPMLM 92 (159)
Q Consensus 53 ~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~iv 92 (159)
.-||.|+..-++...+-..+..|+..+++-+- +.++|+++
T Consensus 83 q~dGti~Amc~tg~~~~~sL~~WI~~Lq~~NP~L~~ipV~F 123 (126)
T PF14784_consen 83 QEDGTIFAMCMTGTSDKDSLLSWIRGLQETNPNLAQIPVLF 123 (126)
T ss_pred eccceEEEEEeccCCCHHHHHHHHHHHHhhCCchhcceEEE
Confidence 44888888888777777888899998887431 23566664
No 477
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=48.31 E-value=1.8e+02 Score=25.11 Aligned_cols=87 Identities=17% Similarity=0.161 Sum_probs=48.3
Q ss_pred EEEEEeCCCcccchH-HHHHH-----hhcCCEEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcC
Q psy11289 31 RLDILDTAGQEEFSA-MREQY-----MRSGEGFLLVFSVTD-RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQR 103 (159)
Q Consensus 31 ~~~l~D~~g~~~~~~-~~~~~-----~~~~~~ii~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 103 (159)
.+.|+||+|...... +.+.. ....+-+++|.|.+. .+.+.++.. .+..... .+ +-=+|.+|.|...
T Consensus 265 D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~---~f~~~~~-~~-i~glIlTKLDEt~-- 337 (767)
T PRK14723 265 HLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVH---AYRHGAG-ED-VDGCIITKLDEAT-- 337 (767)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHH---HHhhccc-CC-CCEEEEeccCCCC--
Confidence 466799999654322 22211 123567888998874 444544432 2222110 01 2346699999543
Q ss_pred CCCHHHHHHHHHHcCCcEEEeCC
Q psy11289 104 QVSSMDAQNVARQLRIPYIECSA 126 (159)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~sa 126 (159)
..-.+..+....++|+..++.
T Consensus 338 --~~G~iL~i~~~~~lPI~yit~ 358 (767)
T PRK14723 338 --HLGPALDTVIRHRLPVHYVST 358 (767)
T ss_pred --CccHHHHHHHHHCCCeEEEec
Confidence 233456677777888766653
No 478
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=47.99 E-value=75 Score=20.61 Aligned_cols=65 Identities=6% Similarity=0.125 Sum_probs=39.3
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHc-CCcEEE
Q psy11289 53 SGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQL-RIPYIE 123 (159)
Q Consensus 53 ~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~ 123 (159)
..+.+++.+..+|....+++...++.+ . ++.+++++............ .+..+++|+++ ++.++.
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~----~-~~~~ivlv~~~~~~~~~~~~-n~~~~~~a~~~~~v~~id 115 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDAL----G-PDRQVYLVNPHVPRPWEPDV-NAYLLDAAKKYKNVTIID 115 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHc----C-CCCEEEEEECCCCcchHHHH-HHHHHHHHHHCCCcEEec
Confidence 579999999999887666666555444 2 34677777776321110111 23346677777 666554
No 479
>PRK13555 azoreductase; Provisional
Probab=47.60 E-value=67 Score=22.55 Aligned_cols=47 Identities=4% Similarity=0.094 Sum_probs=31.3
Q ss_pred HHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc------------CCCCCcEEEEEe
Q psy11289 49 QYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK------------DRDEFPMLMVGN 95 (159)
Q Consensus 49 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~------------~~~~~p~ivv~n 95 (159)
..+..||++++++.+-+-.-=-.++.|+..+.... ...++|++++.+
T Consensus 85 ~~~~~AD~lvi~~P~~n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~ 143 (208)
T PRK13555 85 NQFLEADKVVFAFPLWNFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGA 143 (208)
T ss_pred HHHHHcCEEEEEcCcccccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEc
Confidence 34678999999998876443345567777776531 124677777755
No 480
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=47.33 E-value=1.3e+02 Score=22.99 Aligned_cols=85 Identities=19% Similarity=0.160 Sum_probs=47.0
Q ss_pred CCEEEEEEECCChhhHHH---HHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEe-----
Q psy11289 54 GEGFLLVFSVTDRNSFEE---IYKFHRQILRVKDRDEFP-MLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIEC----- 124 (159)
Q Consensus 54 ~~~ii~v~d~~~~~s~~~---~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~----- 124 (159)
++.++++ -..+..++.. +.+.+..+.+.. .+.+ .-+|.||.|.. ..+..+++.++++++..
T Consensus 173 ad~VIVV-t~pe~~si~~A~~v~kai~~~~~lg--~~~~i~GlViNr~d~~-------~~ie~~ae~lgi~vLg~IP~D~ 242 (329)
T cd02033 173 AQKVIVV-GSNDLQSLYVANNVCNAVEYFRKLG--GNVGVAGMVINKDDGT-------GEAQAFAAHAGIPILAAIPADE 242 (329)
T ss_pred CceEEEe-CCchHHHHHHHHHHHHHHHHHHHhC--CCCCceEEEEeCcCCc-------chHHHHHHHhCCCEEEECCCCH
Confidence 4444444 3445556643 344444444432 1233 55789999852 24567777777764431
Q ss_pred ----C-------CCCCCCHHHHHHHHHHHHHhccc
Q psy11289 125 ----S-------AKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 125 ----s-------a~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
+ ...+..+.+.|..+.+.+.+..+
T Consensus 243 ~V~~a~~~g~~~~~p~s~~a~~f~~LA~~I~~~~~ 277 (329)
T cd02033 243 ELRRKSAAYQIVGRPGTTWGPLFEQLATNVAEAPP 277 (329)
T ss_pred HHHHHHHcCCeecCCCCHHHHHHHHHHHHHHHhcC
Confidence 1 11123477888888888876544
No 481
>PF07764 Omega_Repress: Omega Transcriptional Repressor; InterPro: IPR011686 The omega transcriptional repressor regulates expression of genes involved in copy number control and stable maintenance of plasmids. The omega protein belongs to the structural superfamily of MetJ/Arc repressors featuring a ribbon-helix-helix DNA-binding motif with the beta-ribbon located in and recognising the major groove of operator DNA [].; PDB: 2BNW_D 1IRQ_A 2CAX_B 2BNZ_A.
Probab=46.79 E-value=15 Score=20.41 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc
Q psy11289 125 SAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 125 sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
+|++|.|+.++++..++..++.
T Consensus 44 tAknGgNvKEvme~~lr~~l~~ 65 (71)
T PF07764_consen 44 TAKNGGNVKEVMEQALREKLKS 65 (71)
T ss_dssp HHHSSS-HHHHHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHHH
Confidence 7899999999999888776654
No 482
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=46.38 E-value=72 Score=19.95 Aligned_cols=53 Identities=13% Similarity=0.202 Sum_probs=26.0
Q ss_pred EEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 91 ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
.||.|.-|..+....+.++....++.+|+.|+.+-...+.--.+-++.+.+.+
T Consensus 30 tVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l 82 (110)
T PF04273_consen 30 TVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADAL 82 (110)
T ss_dssp EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHH
Confidence 34567777655555667777889999999876655544433334444444433
No 483
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=46.18 E-value=1.3e+02 Score=22.92 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=25.2
Q ss_pred EEEEEEeCCCcccchHHHHHHh-------hcCCEEEEEEECCC
Q psy11289 30 ARLDILDTAGQEEFSAMREQYM-------RSGEGFLLVFSVTD 65 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~-------~~~~~ii~v~d~~~ 65 (159)
....+.++.|......+...+. -..++++.|+|+.+
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~ 135 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPA 135 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECch
Confidence 3445689999877666555542 14588999999874
No 484
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=46.05 E-value=92 Score=21.77 Aligned_cols=65 Identities=6% Similarity=0.100 Sum_probs=38.1
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHhhc----CCCCCcEEEEEeCCCCCCc-CCCCHHHHHHHHHHc
Q psy11289 53 SGEGFLLVFSVTDRNSFEEIYKFHRQILRVK----DRDEFPMLMVGNKADLDHQ-RQVSSMDAQNVARQL 117 (159)
Q Consensus 53 ~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~ 117 (159)
++|+++++=|+.|........+|...+.+.. ..++.|++.|..-.|.... ....++....|.+.+
T Consensus 42 ~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~~~~~~~~~v~RF~~~F 111 (195)
T cd08166 42 QPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGEEEDPIESKIRRFEKYF 111 (195)
T ss_pred CCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCCCCCcCHHHHHHHHHhh
Confidence 6899999999988654333333433333322 1246787766655666532 334455566666655
No 485
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=45.19 E-value=57 Score=20.23 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=35.1
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeC
Q psy11289 53 SGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125 (159)
Q Consensus 53 ~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 125 (159)
++|.+.+ +.+....+..+.++...+.+... .++++++-|..... . .+.++..|+..+.-+
T Consensus 50 ~pdvV~i--S~~~~~~~~~~~~~i~~l~~~~~-~~~~i~vGG~~~~~---------~-~~~~~~~G~D~~~~~ 109 (119)
T cd02067 50 DADAIGL--SGLLTTHMTLMKEVIEELKEAGL-DDIPVLVGGAIVTR---------D-FKFLKEIGVDAYFGP 109 (119)
T ss_pred CCCEEEE--eccccccHHHHHHHHHHHHHcCC-CCCeEEEECCCCCh---------h-HHHHHHcCCeEEECC
Confidence 5565555 55666678888888888877631 25565555544331 1 135667776644433
No 486
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=45.06 E-value=56 Score=21.98 Aligned_cols=49 Identities=10% Similarity=-0.021 Sum_probs=28.3
Q ss_pred HHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q psy11289 47 REQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNK 96 (159)
Q Consensus 47 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK 96 (159)
...-+..||++|++....+..---.++.|+..+.. ....++|++++++-
T Consensus 62 ~~~~i~~AD~iIi~tP~Y~~s~~~~LKn~lD~~~~-~~l~~K~~~~v~~~ 110 (174)
T TIGR03566 62 ILQAIESADLLVVGSPVYRGSYTGLFKHLFDLVDP-NALIGKPVLLAATG 110 (174)
T ss_pred HHHHHHHCCEEEEECCcCcCcCcHHHHHHHHhcCH-hHhCCCEEEEEEec
Confidence 34446789999999776553222223333333321 12357898888764
No 487
>TIGR03280 methan_mark_11 putative methanogenesis marker protein 11. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=43.60 E-value=1.4e+02 Score=22.42 Aligned_cols=81 Identities=19% Similarity=0.155 Sum_probs=46.8
Q ss_pred hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC----------cCCCCHHHHHHHHHHcCCcE
Q psy11289 52 RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDH----------QRQVSSMDAQNVARQLRIPY 121 (159)
Q Consensus 52 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~~~ 121 (159)
++.-++.+-+...+.+ .+.+.+....+.+....++-|.|++....+.++ .+.++.+++..+++..|+.+
T Consensus 186 rnn~aval~~~v~~~~-~~~l~~~a~~~l~~~s~s~~pGIav~~~~~~p~~L~~fg~~Ak~~vvt~eeA~~~a~~~gi~l 264 (292)
T TIGR03280 186 QNCVSVVLEFAVYPEY-KEKLAREFKKLLKEYTLSDETAMAVYDGLFPPKELKEYGNKAKREMVSIEEAERVAERNNIEI 264 (292)
T ss_pred cCceEEEEEEecCCcc-HHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHHhceeCHHHHHHHHHHCCcEE
Confidence 3444455555443322 344444334433333334468888877644322 35688899999999999888
Q ss_pred EEeCCCCCCCHHHH
Q psy11289 122 IECSAKVRINVDQA 135 (159)
Q Consensus 122 ~~~sa~~~~~i~~~ 135 (159)
++.-- |.|+--.
T Consensus 265 ~~~~g--grGIIGA 276 (292)
T TIGR03280 265 IEVTG--GRGIIGA 276 (292)
T ss_pred EEeCC--CCeeEeH
Confidence 87533 5665443
No 488
>PRK06242 flavodoxin; Provisional
Probab=42.94 E-value=91 Score=20.11 Aligned_cols=67 Identities=3% Similarity=-0.051 Sum_probs=39.7
Q ss_pred HhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEE
Q psy11289 50 YMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122 (159)
Q Consensus 50 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 122 (159)
-+.++|.+++........-...+..|+..+... .++++.++++--- ..... .......++..|+.++
T Consensus 40 ~~~~~d~ii~g~pvy~~~~~~~~~~fl~~~~~~---~~k~~~~f~t~g~-~~~~~--~~~l~~~l~~~g~~~~ 106 (150)
T PRK06242 40 DLSEYDLIGFGSGIYFGKFHKSLLKLIEKLPPV---SGKKAFIFSTSGL-PFLKY--HKALKKKLKEKGFEIV 106 (150)
T ss_pred cHhHCCEEEEeCchhcCCcCHHHHHHHHhhhhh---cCCeEEEEECCCC-CcchH--HHHHHHHHHHCCCEEE
Confidence 356789999987654433334455565554332 4678888887532 22111 4555666777787754
No 489
>PF12317 IFT46_B_C: Intraflagellar transport complex B protein 46 C terminal; InterPro: IPR022088 This entry represents proteins is found in eukaryotes. Proteins are typically between 298 and 416 amino acids in length. It is thought to be a flagellar protein of complex B and like all IFT proteins, it is required for transport of IFT particles into the flagella [].
Probab=42.87 E-value=38 Score=24.00 Aligned_cols=82 Identities=21% Similarity=0.282 Sum_probs=47.7
Q ss_pred cccccccccccc--ceEEEEEEECCe--eEEEEEEeCCCcccchHH-----HHHHhhc--CCEEEEEEECCChh-hHHHH
Q psy11289 5 SYFVTDYDPTIE--DSYTKQCVIDDI--PARLDILDTAGQEEFSAM-----REQYMRS--GEGFLLVFSVTDRN-SFEEI 72 (159)
Q Consensus 5 ~~f~~~~~pt~~--~~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~-----~~~~~~~--~~~ii~v~d~~~~~-s~~~~ 72 (159)
+-|.++|.|.+| +.|.+.-..+|. ..-+.+-|-|........ .+...+. ...-..|=.+.+.+ .-..+
T Consensus 39 kPFiPdyiPAVGdiDaFiKVpRPD~~~d~LGL~vLDEP~~~QSdp~vl~lqLr~~~~~~~~~~~~~v~sie~ae~n~k~I 118 (214)
T PF12317_consen 39 KPFIPDYIPAVGDIDAFIKVPRPDGKPDNLGLTVLDEPSANQSDPTVLDLQLRSISKQANGDKDVPVKSIENAEKNPKEI 118 (214)
T ss_pred cccCccccccccCcccceeccCCCCCccccCCEEecCCCcccCCCceEEEeeecccccccccccceecchhchhhCHHHH
Confidence 358999999999 557777666664 455666887764433210 1111111 12222333334432 35667
Q ss_pred HHHHHHHHhhcCCC
Q psy11289 73 YKFHRQILRVKDRD 86 (159)
Q Consensus 73 ~~~~~~i~~~~~~~ 86 (159)
.+|+..+.+.....
T Consensus 119 d~WI~~i~elHr~k 132 (214)
T PF12317_consen 119 DKWIESIEELHRSK 132 (214)
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999987543
No 490
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=42.66 E-value=43 Score=21.43 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=22.5
Q ss_pred CCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCC
Q psy11289 86 DEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKV 128 (159)
Q Consensus 86 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 128 (159)
.+.|++++...... +++..+.|+++++|++.++..+
T Consensus 80 ~~~P~iIvt~~~~~-------p~~l~e~a~~~~ipll~t~~~t 115 (127)
T PF02603_consen 80 YNPPCIIVTRGLEP-------PPELIELAEKYNIPLLRTPLST 115 (127)
T ss_dssp TT-S-EEEETTT----------HHHHHHHHHCT--EEEESS-H
T ss_pred CCCCEEEEECcCCC-------CHHHHHHHHHhCCcEEEcCCcH
Confidence 57898888755532 5688899999999999887653
No 491
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=41.29 E-value=1e+02 Score=20.20 Aligned_cols=71 Identities=4% Similarity=0.168 Sum_probs=39.0
Q ss_pred hhcCCEEEEEEECCCh------hh-HHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCC-------HHHHHHHHHH
Q psy11289 51 MRSGEGFLLVFSVTDR------NS-FEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVS-------SMDAQNVARQ 116 (159)
Q Consensus 51 ~~~~~~ii~v~d~~~~------~s-~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~-------~~~~~~~~~~ 116 (159)
...+|.+++.+..+|. +. ...+..++..+.+.. ++.+++++.. .......... .+..+++|++
T Consensus 46 ~~~pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~--~~~~vi~~~~-~p~~~~~~~~~~~~~~~n~~l~~~a~~ 122 (169)
T cd01828 46 ALQPKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHF--PNIKIVVQSI-LPVGELKSIPNEQIEELNRQLAQLAQQ 122 (169)
T ss_pred ccCCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHC--CCCeEEEEec-CCcCccCcCCHHHHHHHHHHHHHHHHH
Confidence 3467999999987773 22 244445555555542 5667776653 2221001111 1234567777
Q ss_pred cCCcEEEe
Q psy11289 117 LRIPYIEC 124 (159)
Q Consensus 117 ~~~~~~~~ 124 (159)
.+++++..
T Consensus 123 ~~~~~id~ 130 (169)
T cd01828 123 EGVTFLDL 130 (169)
T ss_pred CCCEEEec
Confidence 88877754
No 492
>TIGR03790 conserved hypothetical protein TIGR03790. Despite a broad and sporadic distribution (Cyanobacteria, Verrucomicrobia, Acidobacteria, beta and delta Proteobacteria, and Planctomycetes), this uncharacterized protein family occurs only among the roughly 8 percent of prokarotyic species that carry homologs of the integral membrane protein exosortase (see TIGR02602), a proposed protein-sorting system transpeptidase.
Probab=41.12 E-value=1.5e+02 Score=22.58 Aligned_cols=49 Identities=27% Similarity=0.260 Sum_probs=26.8
Q ss_pred EEEEEeCCCCCCcCCCCHHHHHHHHHHcCCc---EEEe--CCCCCCCHHHHHHHHHHHH
Q psy11289 90 MLMVGNKADLDHQRQVSSMDAQNVARQLRIP---YIEC--SAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 90 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~~~--sa~~~~~i~~~~~~l~~~~ 143 (159)
++||+|+.|- .+.+.++.++++.++| ++.+ +......-.+-++.|-.-+
T Consensus 3 v~Vv~N~~dp-----~Sv~ia~yYa~~R~IP~~nii~L~~p~~e~i~~~ef~~~I~~pl 56 (316)
T TIGR03790 3 VAVVVNGADP-----ESVQIARYYAEKRGIPEENLITLDLPPKETISREEFFQQIKEPL 56 (316)
T ss_pred EEEEEcCCCh-----hHHHHHHHHHHHcCCCHHHEEEEECCCccccccHHHHHHHHHHH
Confidence 5677777772 2356677777777776 4443 3333334444444444333
No 493
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=40.20 E-value=94 Score=19.59 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=26.9
Q ss_pred HHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 110 AQNVARQLRIPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 110 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
...+++..|+|++.++.....+..++.+.+-++
T Consensus 93 k~~~l~~agiplir~~~~~~~~~~~l~~~l~~~ 125 (126)
T PF10881_consen 93 KDRVLKKAGIPLIRISPKDSYSVEELRRDLREA 125 (126)
T ss_pred HHHHHHHCCCCEEEEeCCCCCCHHHHHHHHHHh
Confidence 455678889999999999999998888776543
No 494
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=40.01 E-value=28 Score=28.28 Aligned_cols=29 Identities=17% Similarity=0.115 Sum_probs=25.6
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 119 IPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 119 ~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
+|++..||.++.|+..+++.++..+-...
T Consensus 250 ~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~ 278 (527)
T TIGR00503 250 TPVFFGTALGNFGVDHFLDGLLQWAPKPE 278 (527)
T ss_pred eEEEEeecccCccHHHHHHHHHHHCCCCc
Confidence 57899999999999999999999886554
No 495
>PF09827 CRISPR_Cas2: CRISPR associated protein Cas2; InterPro: IPR019199 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages. ; PDB: 3EXC_X 2I0X_A 3OQ2_B 3UI3_A 1ZPW_X 2I8E_A 2IVY_A.
Probab=39.98 E-value=41 Score=19.26 Aligned_cols=25 Identities=12% Similarity=0.304 Sum_probs=17.2
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 56 GFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 56 ~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
-++++||++++.....+.+.+....
T Consensus 3 ~~lv~YDi~~~k~~~kv~k~L~~~g 27 (78)
T PF09827_consen 3 LYLVAYDISDNKRRNKVRKILKSYG 27 (78)
T ss_dssp EEEEEEEEHSHHHHHHHHHHHHHTT
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhC
Confidence 5789999988866666655544443
No 496
>PRK14725 pyruvate kinase; Provisional
Probab=39.80 E-value=2.3e+02 Score=23.78 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEeCC-C-CCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 69 FEEIYKFHRQILRVKDRDEFPMLMVGNKA-D-LDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 69 ~~~~~~~~~~i~~~~~~~~~p~ivv~nK~-D-~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
++.+...-++|...+...++|+|+ ++.+ + +.+.-..+.+|+-..+...|..++..| .|...-+....+.+.+.+.
T Consensus 517 ~e~lp~iQk~Ii~~c~~~~kPVI~-ATQmLESM~~~p~PTRAEvtDVAnAvgaD~VMLS--~G~yPveAV~~l~~I~~r~ 593 (608)
T PRK14725 517 FERLAEVQEEILWLCEAAHVPVIW-ATQVLESLAKKGLPSRAEITDAAMALRAECVMLN--KGPHIVEAVRVLDDILRRM 593 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEE-EcchHhhhccCCCCCchhHHHHHhhhcCCEEeec--CCCCHHHHHHHHHHHHHHH
Confidence 333333333444444445778776 4443 2 223344556777777776788899998 8888888887777666543
Q ss_pred c
Q psy11289 147 T 147 (159)
Q Consensus 147 ~ 147 (159)
.
T Consensus 594 e 594 (608)
T PRK14725 594 E 594 (608)
T ss_pred H
Confidence 3
No 497
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=38.66 E-value=1.5e+02 Score=21.33 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=32.1
Q ss_pred EEEEEEeCCCcccchHHH-HHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 30 ARLDILDTAGQEEFSAMR-EQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~-~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+.+.|.||+|......+. ......+|.+|++..+ ++.++..+..+++.+...
T Consensus 114 yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p-~~~si~~~~~~~~~i~~~ 166 (264)
T PRK13231 114 IDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSG-EYMSLYAANNIARGIKKL 166 (264)
T ss_pred CCEEEEecCCCceEccccccccccccceeEEEecC-chhHHHHHHHHHHHHHHc
Confidence 456679998754221111 1112578999998866 566777777776666544
No 498
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=38.51 E-value=62 Score=22.65 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=29.0
Q ss_pred HHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHH
Q psy11289 107 SMDAQNVARQLRIPYIECSAKVRINVDQAFHELVR 141 (159)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 141 (159)
..+-.+++++.+++++-+|+-..-=|..+|+.+..
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivg 112 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVG 112 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhcc
Confidence 56777889999999999999887778888887763
No 499
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=38.41 E-value=1e+02 Score=20.56 Aligned_cols=43 Identities=12% Similarity=0.124 Sum_probs=26.7
Q ss_pred hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q psy11289 52 RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADL 99 (159)
Q Consensus 52 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 99 (159)
..+|.+|+-+. .+-..+..++..+..... .+.+++|||-|...
T Consensus 68 ~~~D~vvly~P----KaK~e~~~lL~~l~~~L~-~g~~i~vVGEnk~G 110 (155)
T PF08468_consen 68 QDFDTVVLYWP----KAKAEAQYLLANLLSHLP-PGTEIFVVGENKGG 110 (155)
T ss_dssp TT-SEEEEE------SSHHHHHHHHHHHHTTS--TT-EEEEEEEGGGT
T ss_pred cCCCEEEEEcc----CcHHHHHHHHHHHHHhCC-CCCEEEEEecCccc
Confidence 46788888884 344555666666666543 57899999977654
No 500
>KOG2733|consensus
Probab=38.41 E-value=75 Score=24.73 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=17.2
Q ss_pred CCEEEEEEECCChhhHHHHHH
Q psy11289 54 GEGFLLVFSVTDRNSFEEIYK 74 (159)
Q Consensus 54 ~~~ii~v~d~~~~~s~~~~~~ 74 (159)
...+|++.|.+|++|++++.+
T Consensus 62 s~~~i~i~D~~n~~Sl~emak 82 (423)
T KOG2733|consen 62 SSSVILIADSANEASLDEMAK 82 (423)
T ss_pred ccceEEEecCCCHHHHHHHHh
Confidence 356699999999999988754
Done!