Query psy11289
Match_columns 159
No_of_seqs 113 out of 1436
Neff 10.1
Searched_HMMs 29240
Date Fri Aug 16 23:01:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11289.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11289hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.1E-35 3.7E-40 208.2 15.8 144 2-146 33-177 (216)
2 3t5g_A GTP-binding protein RHE 100.0 7E-30 2.4E-34 173.4 15.2 150 3-152 27-176 (181)
3 3kkq_A RAS-related protein M-R 100.0 4.4E-29 1.5E-33 169.7 18.8 143 3-145 39-182 (183)
4 2fn4_A P23, RAS-related protei 100.0 5.4E-29 1.8E-33 168.6 17.6 148 3-150 30-177 (181)
5 2bov_A RAla, RAS-related prote 100.0 1E-28 3.5E-33 170.7 19.3 144 4-147 36-179 (206)
6 1u8z_A RAS-related protein RAL 100.0 1.3E-28 4.3E-33 164.6 18.9 142 4-145 26-167 (168)
7 2hup_A RAS-related protein RAB 100.0 8.6E-29 2.9E-33 171.2 18.2 145 3-148 50-196 (201)
8 2fu5_C RAS-related protein RAB 100.0 3.1E-29 1.1E-33 170.4 14.5 147 3-150 29-176 (183)
9 3c5c_A RAS-like protein 12; GD 100.0 3.8E-29 1.3E-33 171.1 14.9 142 3-145 42-186 (187)
10 1c1y_A RAS-related protein RAP 100.0 9.4E-29 3.2E-33 165.4 16.5 142 3-144 24-166 (167)
11 2a9k_A RAS-related protein RAL 100.0 2.9E-28 9.7E-33 165.8 19.0 144 4-147 40-183 (187)
12 3q3j_B RHO-related GTP-binding 100.0 1.8E-29 6.3E-34 176.2 13.3 145 3-149 48-207 (214)
13 3ihw_A Centg3; RAS, centaurin, 100.0 2.2E-28 7.5E-33 167.0 18.0 140 3-148 41-183 (184)
14 1kao_A RAP2A; GTP-binding prot 100.0 2.1E-28 7.3E-33 163.4 17.4 143 3-145 24-166 (167)
15 2ew1_A RAS-related protein RAB 100.0 1.6E-28 5.6E-33 170.0 17.3 145 3-148 47-192 (201)
16 3reg_A RHO-like small GTPase; 100.0 1.1E-28 3.6E-33 169.5 16.1 145 3-149 44-192 (194)
17 3cbq_A GTP-binding protein REM 100.0 5.4E-28 1.9E-32 166.5 19.7 139 11-149 52-192 (195)
18 3tkl_A RAS-related protein RAB 100.0 4.8E-28 1.6E-32 166.1 19.2 148 3-151 37-185 (196)
19 2atv_A RERG, RAS-like estrogen 100.0 3.2E-28 1.1E-32 167.5 18.0 144 3-147 49-193 (196)
20 4dsu_A GTPase KRAS, isoform 2B 100.0 3.9E-28 1.3E-32 165.5 17.9 144 3-147 25-168 (189)
21 2j0v_A RAC-like GTP-binding pr 100.0 3.3E-29 1.1E-33 174.3 12.2 146 3-150 30-185 (212)
22 2q3h_A RAS homolog gene family 100.0 1.8E-28 6.3E-33 169.1 15.7 144 3-148 41-198 (201)
23 3q72_A GTP-binding protein RAD 100.0 4.2E-28 1.5E-32 162.2 17.0 138 9-146 28-165 (166)
24 2atx_A Small GTP binding prote 100.0 2.6E-28 8.8E-33 167.5 16.3 141 3-145 39-193 (194)
25 2a5j_A RAS-related protein RAB 100.0 4.1E-28 1.4E-32 166.3 17.1 145 3-148 42-187 (191)
26 3oes_A GTPase rhebl1; small GT 100.0 4.2E-29 1.4E-33 172.6 12.1 151 3-153 45-195 (201)
27 1z0f_A RAB14, member RAS oncog 100.0 1.1E-27 3.6E-32 161.9 18.7 142 3-145 36-178 (179)
28 2iwr_A Centaurin gamma 1; ANK 100.0 9.8E-28 3.3E-32 162.4 18.0 140 3-148 28-172 (178)
29 2bme_A RAB4A, RAS-related prot 100.0 1.2E-27 4.1E-32 162.9 17.4 146 3-149 31-177 (186)
30 2efe_B Small GTP-binding prote 100.0 1.5E-27 5.3E-32 161.6 17.8 143 4-147 34-177 (181)
31 2g3y_A GTP-binding protein GEM 100.0 1E-27 3.5E-32 167.2 17.0 143 5-147 62-205 (211)
32 3q85_A GTP-binding protein REM 100.0 1.4E-27 4.7E-32 160.2 16.9 141 6-146 26-168 (169)
33 3tw8_B RAS-related protein RAB 100.0 8.1E-28 2.8E-32 162.7 15.9 146 3-150 30-176 (181)
34 2nzj_A GTP-binding protein REM 100.0 2.2E-27 7.4E-32 159.9 17.9 142 5-147 27-171 (175)
35 2hxs_A RAB-26, RAS-related pro 100.0 8.2E-28 2.8E-32 162.5 15.8 145 3-147 27-175 (178)
36 3dz8_A RAS-related protein RAB 100.0 3.7E-28 1.3E-32 166.5 14.1 145 3-148 44-189 (191)
37 2j1l_A RHO-related GTP-binding 100.0 5.9E-28 2E-32 168.5 15.3 144 3-148 55-212 (214)
38 1zbd_A Rabphilin-3A; G protein 100.0 2.3E-27 8E-32 163.8 18.1 144 3-147 29-173 (203)
39 1z06_A RAS-related protein RAB 100.0 1.6E-27 5.4E-32 163.0 17.1 142 3-144 41-187 (189)
40 1mh1_A RAC1; GTP-binding, GTPa 100.0 5.8E-28 2E-32 164.2 14.7 143 3-147 26-182 (186)
41 3bc1_A RAS-related protein RAB 100.0 2.5E-27 8.4E-32 162.0 17.9 147 4-150 33-190 (195)
42 1r2q_A RAS-related protein RAB 100.0 1.8E-27 6E-32 159.5 16.8 140 3-143 27-167 (170)
43 2bcg_Y Protein YP2, GTP-bindin 100.0 1.8E-27 6.2E-32 164.8 17.4 144 3-147 29-173 (206)
44 1z08_A RAS-related protein RAB 100.0 6E-28 2.1E-32 162.0 14.3 141 4-145 28-169 (170)
45 2ce2_X GTPase HRAS; signaling 100.0 1.1E-26 3.7E-31 154.7 20.1 141 4-145 25-165 (166)
46 1ek0_A Protein (GTP-binding pr 100.0 1.7E-27 5.9E-32 159.5 16.3 140 3-143 24-167 (170)
47 2g6b_A RAS-related protein RAB 100.0 3.4E-27 1.2E-31 159.7 17.9 143 4-147 32-176 (180)
48 2il1_A RAB12; G-protein, GDP, 100.0 2.5E-27 8.6E-32 162.6 17.2 143 3-146 47-191 (192)
49 1m7b_A RND3/RHOE small GTP-bin 100.0 3.4E-28 1.2E-32 165.7 12.8 141 3-145 28-183 (184)
50 2gf9_A RAS-related protein RAB 100.0 2E-27 6.9E-32 162.5 16.4 144 3-147 43-187 (189)
51 2o52_A RAS-related protein RAB 100.0 1.5E-27 5E-32 164.8 15.8 147 3-150 46-193 (200)
52 1z2a_A RAS-related protein RAB 100.0 1.9E-27 6.4E-32 159.1 15.2 140 4-145 27-167 (168)
53 2p5s_A RAS and EF-hand domain 100.0 2.6E-27 8.8E-32 163.3 16.3 142 3-145 49-197 (199)
54 3con_A GTPase NRAS; structural 100.0 9.4E-27 3.2E-31 159.1 18.9 143 4-147 43-185 (190)
55 2f7s_A C25KG, RAS-related prot 100.0 1E-27 3.5E-32 167.2 14.3 147 3-149 46-203 (217)
56 2oil_A CATX-8, RAS-related pro 100.0 4.7E-27 1.6E-31 161.1 17.2 144 3-147 46-190 (193)
57 1x3s_A RAS-related protein RAB 100.0 7.7E-27 2.6E-31 159.9 18.2 144 3-147 36-180 (195)
58 1z0j_A RAB-22, RAS-related pro 100.0 5.6E-27 1.9E-31 157.1 17.1 141 3-144 27-168 (170)
59 3cpj_B GTP-binding protein YPT 100.0 1.1E-27 3.8E-32 168.0 14.3 146 3-149 34-180 (223)
60 1g16_A RAS-related protein SEC 100.0 3.1E-27 1.1E-31 158.4 15.5 142 4-147 25-167 (170)
61 2fg5_A RAB-22B, RAS-related pr 100.0 1.9E-27 6.5E-32 163.2 14.7 143 3-146 44-187 (192)
62 1gwn_A RHO-related GTP-binding 100.0 8.6E-28 3E-32 166.8 12.9 141 3-145 49-204 (205)
63 2gco_A H9, RHO-related GTP-bin 100.0 5.3E-27 1.8E-31 162.0 16.1 141 3-145 46-200 (201)
64 2yc2_C IFT27, small RAB-relate 100.0 1.3E-27 4.4E-32 165.2 13.0 142 6-147 46-194 (208)
65 1wms_A RAB-9, RAB9, RAS-relate 100.0 2.4E-26 8.4E-31 155.1 18.8 142 4-146 29-175 (177)
66 2erx_A GTP-binding protein DI- 100.0 5.8E-27 2E-31 157.2 15.5 142 4-145 25-167 (172)
67 2y8e_A RAB-protein 6, GH09086P 100.0 5.7E-27 1.9E-31 158.3 15.3 140 4-144 36-176 (179)
68 2fv8_A H6, RHO-related GTP-bin 100.0 7.2E-27 2.4E-31 162.1 16.0 143 3-147 46-202 (207)
69 3bwd_D RAC-like GTP-binding pr 99.9 1.6E-28 5.4E-33 166.6 7.0 141 3-145 29-181 (182)
70 3clv_A RAB5 protein, putative; 99.9 3.5E-26 1.2E-30 157.3 18.4 141 3-147 28-206 (208)
71 2cjw_A GTP-binding protein GEM 99.9 2.6E-26 8.9E-31 157.7 17.2 143 5-147 31-174 (192)
72 2gf0_A GTP-binding protein DI- 99.9 2.7E-26 9.3E-31 157.7 16.8 144 4-148 30-174 (199)
73 3cph_A RAS-related protein SEC 99.9 4E-26 1.4E-30 158.5 17.4 142 4-147 42-184 (213)
74 4gzl_A RAS-related C3 botulinu 99.9 3.3E-27 1.1E-31 163.5 11.6 139 3-143 51-203 (204)
75 3t1o_A Gliding protein MGLA; G 99.9 2.3E-27 7.8E-32 162.6 10.5 134 11-148 53-195 (198)
76 1ky3_A GTP-binding protein YPT 99.9 2.1E-26 7.2E-31 155.9 14.1 145 3-147 29-180 (182)
77 4djt_A GTP-binding nuclear pro 99.9 4.1E-26 1.4E-30 159.2 14.2 148 3-151 32-181 (218)
78 1vg8_A RAS-related protein RAB 99.9 7E-26 2.4E-30 156.6 14.4 144 3-147 29-177 (207)
79 3gj0_A GTP-binding nuclear pro 99.9 4.7E-26 1.6E-30 159.3 11.7 141 3-147 36-177 (221)
80 2wkq_A NPH1-1, RAS-related C3 99.9 1.4E-25 4.8E-30 165.3 14.7 142 3-146 176-331 (332)
81 3l0i_B RAS-related protein RAB 99.9 8.1E-28 2.8E-32 165.9 2.4 143 3-146 54-197 (199)
82 4bas_A ADP-ribosylation factor 99.9 3.9E-26 1.3E-30 156.9 9.1 142 3-149 38-193 (199)
83 3th5_A RAS-related C3 botulinu 99.9 1.9E-27 6.6E-32 164.5 0.0 139 3-143 51-203 (204)
84 1f6b_A SAR1; gtpases, N-termin 99.9 3.7E-25 1.3E-29 152.6 11.3 132 5-142 48-196 (198)
85 1r8s_A ADP-ribosylation factor 99.9 2.3E-25 7.8E-30 148.6 9.2 136 4-145 22-162 (164)
86 1m2o_B GTP-binding protein SAR 99.9 1.4E-24 5E-29 148.7 12.2 132 5-142 46-189 (190)
87 1cip_A Protein (guanine nucleo 99.9 2E-25 7E-30 165.9 7.5 143 4-148 159-347 (353)
88 1zj6_A ADP-ribosylation factor 99.9 3.5E-24 1.2E-28 146.1 13.0 139 4-148 38-181 (187)
89 1zd9_A ADP-ribosylation factor 99.9 2.2E-25 7.5E-30 152.4 6.6 138 3-145 43-185 (188)
90 2f9l_A RAB11B, member RAS onco 99.9 4E-23 1.4E-27 142.3 17.9 143 4-147 27-170 (199)
91 2b6h_A ADP-ribosylation factor 99.9 9.2E-25 3.2E-29 149.9 9.1 135 4-144 51-190 (192)
92 1fzq_A ADP-ribosylation factor 99.9 2.3E-24 8E-29 146.5 10.7 133 8-145 41-178 (181)
93 1upt_A ARL1, ADP-ribosylation 99.9 2.6E-24 9E-29 144.3 10.2 136 5-146 30-170 (171)
94 2zej_A Dardarin, leucine-rich 99.9 5.3E-25 1.8E-29 150.1 6.8 142 5-148 27-181 (184)
95 2xtz_A Guanine nucleotide-bind 99.9 5.7E-26 2E-30 168.9 2.0 146 3-148 142-348 (354)
96 2h57_A ADP-ribosylation factor 99.9 2.5E-23 8.5E-28 142.2 14.6 134 7-145 47-187 (190)
97 1ksh_A ARF-like protein 2; sma 99.9 3.6E-23 1.2E-27 140.8 13.9 134 8-146 43-181 (186)
98 2x77_A ADP-ribosylation factor 99.9 2E-24 6.8E-29 147.5 6.9 138 4-147 44-186 (189)
99 2h17_A ADP-ribosylation factor 99.9 1.2E-23 4.2E-28 142.8 10.6 133 4-142 43-180 (181)
100 3llu_A RAS-related GTP-binding 99.9 9.1E-24 3.1E-28 145.2 9.4 115 26-143 65-195 (196)
101 1azs_C GS-alpha; complex (lyas 99.9 2.8E-24 9.7E-29 161.7 6.4 142 4-147 183-387 (402)
102 1u0l_A Probable GTPase ENGC; p 99.9 5.2E-24 1.8E-28 155.7 7.7 129 2-141 37-169 (301)
103 1oix_A RAS-related protein RAB 99.9 2.9E-22 1E-26 137.3 16.0 139 4-143 51-190 (191)
104 3r7w_B Gtpase2, GTP-binding pr 99.9 2.6E-24 8.9E-29 157.6 4.8 131 10-147 30-176 (331)
105 1moz_A ARL1, ADP-ribosylation 99.9 6.4E-23 2.2E-27 139.0 10.9 138 4-147 40-182 (183)
106 3ohm_A Guanine nucleotide-bind 99.9 2.4E-23 8.4E-28 153.0 7.5 134 12-148 152-321 (327)
107 2fh5_B SR-beta, signal recogni 99.9 5.9E-23 2E-27 142.8 8.6 137 3-142 28-213 (214)
108 1zcb_A G alpha I/13; GTP-bindi 99.9 8.7E-24 3E-28 157.7 4.1 144 4-149 167-357 (362)
109 3c5h_A Glucocorticoid receptor 99.9 2.3E-24 8E-29 154.2 1.0 138 5-144 54-254 (255)
110 3o47_A ADP-ribosylation factor 99.9 3.9E-23 1.3E-27 152.8 6.0 137 4-146 187-328 (329)
111 4fid_A G protein alpha subunit 99.9 4.6E-23 1.6E-27 152.1 5.0 118 28-145 159-328 (340)
112 3r7w_A Gtpase1, GTP-binding pr 99.9 2.4E-21 8.2E-26 141.9 11.3 133 10-145 34-181 (307)
113 3lvq_E ARF-GAP with SH3 domain 99.9 3.6E-21 1.2E-25 149.2 10.9 140 5-153 345-492 (497)
114 2wji_A Ferrous iron transport 99.8 1.8E-20 6.2E-25 125.4 11.8 123 11-143 32-163 (165)
115 2cxx_A Probable GTP-binding pr 99.8 1.8E-20 6E-25 127.6 9.6 137 4-148 23-187 (190)
116 2qu8_A Putative nucleolar GTP- 99.8 2.4E-19 8.1E-24 125.9 15.5 128 17-148 65-208 (228)
117 3dpu_A RAB family protein; roc 99.8 9E-21 3.1E-25 148.2 8.3 140 3-147 62-210 (535)
118 2lkc_A Translation initiation 99.8 2.9E-20 1E-24 125.2 9.3 133 4-149 30-175 (178)
119 2wjg_A FEOB, ferrous iron tran 99.8 2.4E-19 8.1E-24 121.9 11.1 128 10-147 35-171 (188)
120 1svi_A GTP-binding protein YSX 99.8 2.2E-19 7.5E-24 122.8 10.2 133 4-144 45-194 (195)
121 2gj8_A MNME, tRNA modification 99.8 5E-20 1.7E-24 124.2 6.8 126 8-144 32-165 (172)
122 2dyk_A GTP-binding protein; GT 99.8 1.8E-19 6.1E-24 119.5 8.8 124 8-143 29-160 (161)
123 4dcu_A GTP-binding protein ENG 99.8 3.3E-19 1.1E-23 136.9 9.2 137 6-149 221-373 (456)
124 3iev_A GTP-binding protein ERA 99.8 5.2E-18 1.8E-22 124.3 15.0 131 9-145 39-182 (308)
125 3a1s_A Iron(II) transport prot 99.8 2.1E-18 7.2E-23 123.5 12.1 127 8-144 32-166 (258)
126 3iby_A Ferrous iron transport 99.8 5.3E-19 1.8E-23 126.4 8.3 126 7-142 27-164 (256)
127 2hjg_A GTP-binding protein ENG 99.8 6.2E-19 2.1E-23 134.7 8.3 133 8-147 203-351 (436)
128 3b1v_A Ferrous iron uptake tra 99.8 1.6E-18 5.3E-23 124.9 9.2 128 6-144 28-163 (272)
129 3pqc_A Probable GTP-binding pr 99.7 1.5E-17 5E-22 113.4 10.5 107 32-145 70-194 (195)
130 3gee_A MNME, tRNA modification 99.7 1.3E-17 4.6E-22 128.3 11.1 131 6-144 259-397 (476)
131 1nrj_B SR-beta, signal recogni 99.7 5.2E-19 1.8E-23 123.1 2.8 104 28-131 53-170 (218)
132 3i8s_A Ferrous iron transport 99.7 4.8E-18 1.6E-22 122.6 7.8 127 8-144 30-168 (274)
133 1xzp_A Probable tRNA modificat 99.7 1.4E-16 4.8E-21 122.8 14.6 128 6-145 269-405 (482)
134 3k53_A Ferrous iron transport 99.7 7.2E-17 2.4E-21 116.2 11.6 128 11-147 32-168 (271)
135 3cb4_D GTP-binding protein LEP 99.7 2.3E-16 7.8E-21 124.3 14.3 115 26-147 67-184 (599)
136 4dhe_A Probable GTP-binding pr 99.7 1.1E-16 3.7E-21 111.6 10.3 115 29-148 78-214 (223)
137 3qq5_A Small GTP-binding prote 99.7 2.4E-17 8.2E-22 125.2 7.3 128 9-146 63-197 (423)
138 1mky_A Probable GTP-binding pr 99.7 2E-16 6.8E-21 121.0 12.2 129 7-146 28-167 (439)
139 2ywe_A GTP-binding protein LEP 99.7 4E-16 1.4E-20 122.8 13.9 115 26-147 69-186 (600)
140 2e87_A Hypothetical protein PH 99.7 6.2E-16 2.1E-20 115.4 14.2 130 12-147 198-338 (357)
141 2yv5_A YJEQ protein; hydrolase 99.7 9.2E-17 3.1E-21 117.3 9.5 128 4-140 35-164 (302)
142 3sjy_A Translation initiation 99.7 3.7E-16 1.3E-20 118.3 12.2 114 30-146 75-193 (403)
143 1lnz_A SPO0B-associated GTP-bi 99.7 1.4E-16 4.9E-21 118.0 9.5 134 9-147 186-332 (342)
144 1wf3_A GTP-binding protein; GT 99.6 8.2E-16 2.8E-20 112.2 10.2 125 10-144 37-172 (301)
145 1s0u_A EIF-2-gamma, translatio 99.6 3E-15 1E-19 113.5 13.6 109 30-145 81-198 (408)
146 3geh_A MNME, tRNA modification 99.6 4E-16 1.4E-20 119.8 7.7 129 6-147 250-386 (462)
147 1mky_A Probable GTP-binding pr 99.6 1.1E-15 3.9E-20 116.8 9.5 134 7-147 207-357 (439)
148 2hjg_A GTP-binding protein ENG 99.6 7.9E-16 2.7E-20 117.6 6.7 126 8-145 31-165 (436)
149 1kk1_A EIF2gamma; initiation o 99.6 9.6E-15 3.3E-19 110.8 12.0 109 30-145 83-200 (410)
150 3l82_B F-box only protein 4; T 99.6 1E-15 3.6E-20 105.0 5.8 109 36-147 108-225 (227)
151 1wb1_A Translation elongation 99.6 1.5E-14 5.2E-19 111.7 12.3 113 23-145 68-189 (482)
152 2qag_A Septin-2, protein NEDD5 99.6 3.3E-16 1.1E-20 117.0 2.1 131 13-149 77-237 (361)
153 2qtf_A Protein HFLX, GTP-bindi 99.6 9.2E-14 3.2E-18 103.8 14.3 135 9-147 207-356 (364)
154 2elf_A Protein translation elo 99.6 1.8E-14 6.3E-19 107.8 10.2 109 30-145 60-180 (370)
155 3p26_A Elongation factor 1 alp 99.6 4.3E-14 1.5E-18 109.2 12.3 106 27-134 108-227 (483)
156 3tr5_A RF-3, peptide chain rel 99.6 5E-14 1.7E-18 109.8 12.6 74 21-101 75-148 (528)
157 2c78_A Elongation factor TU-A; 99.6 8.6E-15 2.9E-19 110.9 7.9 115 24-143 69-210 (405)
158 3j2k_7 ERF3, eukaryotic polype 99.6 4E-14 1.4E-18 108.2 11.4 112 20-137 87-217 (439)
159 1jny_A EF-1-alpha, elongation 99.5 2E-15 6.7E-20 115.4 4.0 109 28-137 82-205 (435)
160 1g7s_A Translation initiation 99.5 3.8E-14 1.3E-18 111.7 11.3 107 31-145 71-218 (594)
161 1d2e_A Elongation factor TU (E 99.5 2.1E-14 7.3E-19 108.4 8.5 113 27-144 63-194 (397)
162 1zun_B Sulfate adenylate trans 99.5 3.4E-14 1.2E-18 108.5 9.6 104 29-136 103-215 (434)
163 3t5d_A Septin-7; GTP-binding p 99.5 1E-14 3.5E-19 105.0 5.9 135 4-143 31-202 (274)
164 3l2o_B F-box only protein 4; s 99.5 3.4E-14 1.2E-18 101.9 7.9 108 36-146 193-309 (312)
165 1ega_A Protein (GTP-binding pr 99.5 4.4E-14 1.5E-18 103.1 7.7 126 11-144 39-174 (301)
166 2xtp_A GTPase IMAP family memb 99.5 2.1E-13 7.3E-18 97.3 10.7 135 7-146 48-209 (260)
167 3izy_P Translation initiation 99.5 5.5E-16 1.9E-20 120.6 -3.0 133 7-146 29-169 (537)
168 2ged_A SR-beta, signal recogni 99.5 1.7E-14 5.6E-19 98.3 4.7 78 28-105 89-174 (193)
169 3lxx_A GTPase IMAP family memb 99.5 1.2E-12 4.2E-17 92.3 13.7 127 17-147 67-216 (239)
170 1r5b_A Eukaryotic peptide chai 99.5 1.3E-14 4.3E-19 111.8 2.9 110 24-136 117-243 (467)
171 3avx_A Elongation factor TS, e 99.5 8.6E-14 2.9E-18 115.5 7.6 115 25-144 354-485 (1289)
172 2dy1_A Elongation factor G; tr 99.4 9.8E-13 3.3E-17 105.2 12.4 68 28-100 72-139 (665)
173 1f60_A Elongation factor EEF1A 99.4 1.1E-13 3.7E-18 106.3 6.6 103 29-135 84-202 (458)
174 4dcu_A GTP-binding protein ENG 99.4 1.9E-13 6.4E-18 105.0 7.8 124 10-145 53-185 (456)
175 3izq_1 HBS1P, elongation facto 99.4 6.7E-14 2.3E-18 110.8 4.4 106 30-135 245-362 (611)
176 1zo1_I IF2, translation initia 99.4 7.1E-15 2.4E-19 113.6 -3.0 109 24-142 47-164 (501)
177 2aka_B Dynamin-1; fusion prote 99.4 2.4E-13 8.3E-18 98.6 3.9 110 30-143 125-251 (299)
178 3lxw_A GTPase IMAP family memb 99.4 1.1E-11 3.9E-16 87.9 12.2 132 14-148 56-211 (247)
179 2h5e_A Peptide chain release f 99.4 8.9E-12 3.1E-16 97.2 12.1 67 30-101 82-148 (529)
180 1udx_A The GTP-binding protein 99.3 3.3E-11 1.1E-15 91.3 13.6 135 10-148 186-328 (416)
181 1dar_A EF-G, elongation factor 99.3 2.3E-11 8E-16 97.6 12.1 67 30-101 77-143 (691)
182 2rdo_7 EF-G, elongation factor 99.3 4.3E-11 1.5E-15 96.2 13.4 70 27-101 79-148 (704)
183 1pui_A ENGB, probable GTP-bind 99.3 2.1E-11 7.3E-16 83.9 9.6 128 8-145 52-199 (210)
184 3h2y_A GTPase family protein; 99.3 2.7E-11 9.2E-16 90.6 10.3 97 39-143 55-158 (368)
185 2j69_A Bacterial dynamin-like 99.3 1.3E-11 4.6E-16 99.0 8.8 113 31-147 175-327 (695)
186 2qnr_A Septin-2, protein NEDD5 99.3 2.3E-12 8E-17 94.0 3.4 120 23-148 69-217 (301)
187 3t34_A Dynamin-related protein 99.2 4.8E-12 1.6E-16 94.4 4.5 107 31-140 137-256 (360)
188 3def_A T7I23.11 protein; chlor 99.2 1.1E-10 3.9E-15 83.3 10.7 99 7-108 63-172 (262)
189 3mca_A HBS1, elongation factor 99.2 7.1E-14 2.4E-18 110.3 -7.3 96 30-133 255-371 (592)
190 2xex_A Elongation factor G; GT 99.2 6.9E-10 2.4E-14 89.1 14.7 72 23-101 70-141 (693)
191 1jwy_B Dynamin A GTPase domain 99.2 1.6E-10 5.6E-15 84.4 8.9 111 31-145 132-262 (315)
192 3ec1_A YQEH GTPase; atnos1, at 99.1 1.3E-10 4.5E-15 86.9 8.5 97 39-143 57-160 (369)
193 1yrb_A ATP(GTP)binding protein 99.1 2.1E-10 7.2E-15 81.6 7.9 109 30-144 109-256 (262)
194 3p32_A Probable GTPase RV1496/ 99.1 4.3E-11 1.5E-15 89.1 4.1 103 30-145 172-284 (355)
195 1wxq_A GTP-binding protein; st 99.0 7.7E-11 2.6E-15 88.9 2.2 46 87-137 214-262 (397)
196 1h65_A Chloroplast outer envel 99.0 4.2E-09 1.4E-13 75.5 10.7 97 9-108 68-175 (270)
197 2wsm_A Hydrogenase expression/ 99.0 4E-10 1.4E-14 78.1 4.9 106 30-147 109-216 (221)
198 3vqt_A RF-3, peptide chain rel 99.0 1.3E-08 4.6E-13 79.7 13.9 72 23-101 95-166 (548)
199 1puj_A YLQF, conserved hypothe 99.0 1.5E-09 5.3E-14 78.3 7.8 99 35-144 4-105 (282)
200 1n0u_A EF-2, elongation factor 99.0 2.2E-09 7.5E-14 87.9 9.0 70 26-100 94-163 (842)
201 2qag_C Septin-7; cell cycle, c 98.9 1.9E-10 6.7E-15 87.2 2.0 113 26-143 84-225 (418)
202 2hf9_A Probable hydrogenase ni 98.9 3.5E-12 1.2E-16 88.9 -7.1 58 88-145 165-224 (226)
203 1jal_A YCHF protein; nucleotid 98.9 2.6E-08 8.8E-13 74.2 12.5 42 86-127 198-239 (363)
204 2x2e_A Dynamin-1; nitration, h 98.9 1.5E-10 5.1E-15 86.1 -1.0 108 30-141 130-254 (353)
205 2p67_A LAO/AO transport system 98.8 6.6E-09 2.3E-13 76.9 7.2 103 30-144 149-260 (341)
206 2www_A Methylmalonic aciduria 98.8 4.6E-08 1.6E-12 72.7 10.6 101 31-144 168-278 (349)
207 3j25_A Tetracycline resistance 98.8 1.2E-08 4.3E-13 81.2 7.0 66 30-100 67-132 (638)
208 2dby_A GTP-binding protein; GD 98.8 1.8E-07 6.3E-12 69.8 12.4 49 87-135 201-252 (368)
209 4fn5_A EF-G 1, elongation fact 98.7 2.4E-07 8.3E-12 74.7 13.3 67 29-100 84-150 (709)
210 2qpt_A EH domain-containing pr 98.7 5E-08 1.7E-12 76.5 7.4 68 31-102 155-233 (550)
211 3cnl_A YLQF, putative uncharac 98.5 5.9E-08 2E-12 69.3 4.2 93 37-141 4-97 (262)
212 3zvr_A Dynamin-1; hydrolase, D 98.5 4.4E-08 1.5E-12 79.1 3.6 105 32-142 152-275 (772)
213 1t9h_A YLOQ, probable GTPase E 98.5 3.2E-08 1.1E-12 72.2 1.2 88 46-137 79-169 (307)
214 2qm8_A GTPase/ATPase; G protei 98.4 1.1E-06 3.9E-11 64.8 8.1 102 31-144 149-260 (337)
215 2rcn_A Probable GTPase ENGC; Y 98.2 3.7E-06 1.3E-10 62.5 7.2 83 51-138 128-212 (358)
216 4a9a_A Ribosome-interacting GT 98.2 4E-05 1.4E-09 57.3 12.8 111 6-120 97-223 (376)
217 1ni3_A YCHF GTPase, YCHF GTP-b 97.6 0.0024 8.1E-08 48.1 12.9 57 87-143 224-305 (392)
218 2ohf_A Protein OLA1, GTP-bindi 97.5 0.0001 3.4E-09 55.5 4.4 39 30-68 86-131 (396)
219 2j37_W Signal recognition part 97.1 0.00074 2.5E-08 52.4 5.8 101 30-142 184-310 (504)
220 3dm5_A SRP54, signal recogniti 96.1 0.055 1.9E-06 41.3 9.7 86 30-126 183-274 (443)
221 4dzz_A Plasmid partitioning pr 95.8 0.045 1.6E-06 36.6 7.4 86 30-122 76-162 (206)
222 1j8m_F SRP54, signal recogniti 95.2 0.19 6.4E-06 36.2 9.1 91 30-134 181-280 (297)
223 3end_A Light-independent proto 94.8 0.36 1.2E-05 34.5 9.8 112 30-150 157-290 (307)
224 3cwq_A Para family chromosome 94.4 0.64 2.2E-05 31.3 9.8 85 30-122 68-153 (209)
225 3kl4_A SRP54, signal recogniti 93.9 0.2 6.8E-06 38.1 7.1 86 30-126 180-273 (433)
226 3ea0_A ATPase, para family; al 93.5 1 3.4E-05 30.8 9.7 88 30-126 119-206 (245)
227 2ph1_A Nucleotide-binding prot 93.0 0.84 2.9E-05 31.8 8.7 90 29-123 128-224 (262)
228 2v3c_C SRP54, signal recogniti 92.9 1.7 5.7E-05 33.0 10.7 83 30-124 181-271 (432)
229 1wcv_1 SOJ, segregation protei 92.9 0.85 2.9E-05 31.7 8.6 68 29-99 111-181 (257)
230 3k9g_A PF-32 protein; ssgcid, 91.4 1.1 3.7E-05 31.2 7.7 64 30-98 145-208 (267)
231 1hyq_A MIND, cell division inh 91.3 2.6 8.8E-05 29.1 10.3 83 30-122 111-193 (263)
232 3ec1_A YQEH GTPase; atnos1, at 91.1 0.011 3.6E-07 44.1 -3.1 95 32-132 214-318 (369)
233 1g3q_A MIND ATPase, cell divis 90.3 3 0.0001 28.2 9.8 83 30-122 112-194 (237)
234 1cp2_A CP2, nitrogenase iron p 89.8 3.7 0.00013 28.4 10.3 88 30-122 116-205 (269)
235 3q9l_A Septum site-determining 89.4 0.71 2.4E-05 31.9 5.3 115 29-149 113-252 (260)
236 2afh_E Nitrogenase iron protei 87.8 5.5 0.00019 28.0 9.6 88 30-122 119-208 (289)
237 3h2y_A GTPase family protein; 87.6 0.0076 2.6E-07 44.9 -6.2 90 32-127 213-312 (368)
238 1tq4_A IIGP1, interferon-induc 85.7 9.8 0.00033 28.7 11.3 105 32-145 122-253 (413)
239 3kjh_A CO dehydrogenase/acetyl 85.1 6.8 0.00023 26.5 8.7 77 29-118 131-207 (254)
240 3pg5_A Uncharacterized protein 84.6 7.4 0.00025 28.5 8.7 43 29-74 153-195 (361)
241 2oze_A ORF delta'; para, walke 83.2 6.9 0.00024 27.5 7.8 83 30-118 155-241 (298)
242 2qag_B Septin-6, protein NEDD5 83.0 2.6 8.8E-05 32.0 5.6 42 86-127 175-218 (427)
243 3bfv_A CAPA1, CAPB2, membrane 80.8 6.7 0.00023 27.5 6.9 65 30-100 192-257 (271)
244 4a9a_A Ribosome-interacting GT 80.6 3.9 0.00013 30.5 5.8 53 86-145 248-300 (376)
245 2xj4_A MIPZ; replication, cell 79.4 3.9 0.00013 28.8 5.3 34 30-65 104-137 (286)
246 3e70_C DPA, signal recognition 77.6 7.7 0.00026 28.2 6.5 90 32-134 214-309 (328)
247 3ez9_A Para; DNA binding, wing 76.5 19 0.00066 26.6 8.6 67 30-98 248-321 (403)
248 2ffh_A Protein (FFH); SRP54, s 74.6 20 0.00069 27.1 8.3 85 30-125 181-271 (425)
249 3u7r_A NADPH-dependent FMN red 71.1 5.6 0.00019 26.5 4.1 73 47-120 61-136 (190)
250 2xxa_A Signal recognition part 69.4 34 0.0012 25.9 9.9 82 30-123 184-272 (433)
251 2ark_A Flavodoxin; FMN, struct 67.5 23 0.00077 23.1 7.6 61 31-97 36-98 (188)
252 3szr_A Interferon-induced GTP- 66.4 9 0.00031 30.4 5.0 65 32-100 149-227 (608)
253 2a5l_A Trp repressor binding p 66.4 24 0.00082 22.9 6.7 74 49-122 67-143 (200)
254 3cio_A ETK, tyrosine-protein k 64.6 24 0.00083 25.0 6.6 65 30-100 214-279 (299)
255 1bif_A 6-phosphofructo-2-kinas 63.0 9 0.00031 29.2 4.3 49 32-81 89-147 (469)
256 3la6_A Tyrosine-protein kinase 62.7 38 0.0013 23.9 8.1 66 30-100 202-267 (286)
257 2zki_A 199AA long hypothetical 60.7 21 0.00071 23.3 5.4 75 49-123 66-143 (199)
258 3fwy_A Light-independent proto 60.6 44 0.0015 24.0 10.1 84 31-123 165-249 (314)
259 1ydg_A Trp repressor binding p 58.8 16 0.00055 24.2 4.6 75 49-123 74-151 (211)
260 3sop_A Neuronal-specific septi 57.7 8.1 0.00028 27.1 3.0 64 54-123 112-178 (270)
261 1ls1_A Signal recognition part 57.5 48 0.0016 23.5 9.1 86 30-126 181-272 (295)
262 2px0_A Flagellar biosynthesis 57.4 40 0.0014 24.0 6.6 85 30-125 183-273 (296)
263 1ko7_A HPR kinase/phosphatase; 56.9 6.2 0.00021 28.7 2.3 51 86-143 79-129 (314)
264 1vma_A Cell division protein F 55.1 55 0.0019 23.4 9.7 83 32-126 189-284 (306)
265 4hs4_A Chromate reductase; tri 54.8 27 0.00091 23.2 5.1 74 47-121 67-142 (199)
266 1t0i_A YLR011WP; FMN binding p 53.5 39 0.0013 21.8 5.8 72 47-123 78-149 (191)
267 3fvw_A Putative NAD(P)H-depend 53.4 22 0.00074 23.4 4.5 72 47-120 61-141 (192)
268 3k1y_A Oxidoreductase; structu 53.1 26 0.00089 23.2 4.8 71 47-120 79-150 (191)
269 1rtt_A Conserved hypothetical 52.5 16 0.00054 23.9 3.7 72 49-121 68-141 (193)
270 3lcm_A SMU.1420, putative oxid 52.3 21 0.00073 23.5 4.3 50 48-97 68-129 (196)
271 3b6i_A Flavoprotein WRBA; flav 51.9 27 0.00094 22.6 4.8 74 49-123 64-140 (198)
272 1byi_A Dethiobiotin synthase; 51.9 48 0.0016 21.8 10.8 87 30-123 109-201 (224)
273 2yhs_A FTSY, cell division pro 50.5 87 0.003 24.3 8.3 82 32-125 378-472 (503)
274 3svl_A Protein YIEF; E. coli C 49.2 46 0.0016 21.9 5.5 74 48-122 67-142 (193)
275 2vzf_A NADH-dependent FMN redu 48.9 25 0.00085 23.1 4.2 71 49-122 65-136 (197)
276 3ez2_A Plasmid partition prote 47.9 73 0.0025 23.4 7.0 34 30-65 245-278 (398)
277 1sqs_A Conserved hypothetical 47.2 63 0.0022 21.8 7.3 72 49-122 75-149 (242)
278 1zu4_A FTSY; GTPase, signal re 46.7 78 0.0027 22.7 10.0 84 30-125 192-288 (320)
279 1d4a_A DT-diaphorase, quinone 44.9 33 0.0011 24.0 4.5 47 51-97 91-149 (273)
280 3ezx_A MMCP 1, monomethylamine 44.4 70 0.0024 21.5 6.4 61 34-94 123-184 (215)
281 2pd2_A Hypothetical protein ST 44.3 45 0.0016 19.3 5.8 63 60-125 4-68 (108)
282 3cf4_G Acetyl-COA decarboxylas 44.2 18 0.00061 23.4 2.8 35 86-124 34-68 (170)
283 3gfs_A FMN-dependent NADPH-azo 44.1 44 0.0015 21.3 4.8 74 48-123 58-131 (174)
284 3do6_A Formate--tetrahydrofola 43.7 74 0.0025 24.8 6.3 57 86-144 359-417 (543)
285 3ha2_A NADPH-quinone reductase 43.6 65 0.0022 20.9 7.3 64 32-96 31-101 (177)
286 1rli_A Trp repressor binding p 43.3 26 0.00088 22.4 3.5 74 49-122 67-151 (184)
287 2q62_A ARSH; alpha/beta, flavo 42.7 30 0.001 23.9 3.9 72 47-120 92-167 (247)
288 2zay_A Response regulator rece 42.4 53 0.0018 19.6 7.7 77 53-145 52-128 (147)
289 3pzx_A Formate--tetrahydrofola 42.3 14 0.00047 28.9 2.2 58 86-145 373-430 (557)
290 3hyn_A Putative signal transdu 42.2 61 0.0021 21.6 5.0 51 44-98 70-120 (189)
291 1s2d_A Purine trans deoxyribos 41.0 71 0.0024 20.6 5.3 40 49-94 77-116 (167)
292 3f2v_A General stress protein 40.8 31 0.0011 22.8 3.6 49 48-96 53-109 (192)
293 2fz5_A Flavodoxin; alpha/beta 40.3 33 0.0011 20.6 3.5 68 50-122 43-112 (137)
294 2ohf_A Protein OLA1, GTP-bindi 40.2 30 0.001 26.0 3.8 43 86-128 221-267 (396)
295 1zpw_X Hypothetical protein TT 38.1 47 0.0016 19.0 3.7 20 55-74 4-23 (90)
296 3tem_A Ribosyldihydronicotinam 37.4 49 0.0017 22.5 4.3 47 51-97 90-148 (228)
297 3gt7_A Sensor protein; structu 37.1 70 0.0024 19.4 7.4 77 53-145 51-127 (154)
298 2hpv_A FMN-dependent NADH-azor 37.0 86 0.0029 20.4 7.0 72 50-121 91-174 (208)
299 3exc_X Uncharacterized protein 36.4 56 0.0019 18.8 3.8 18 55-72 4-21 (91)
300 2amj_A Modulator of drug activ 35.5 95 0.0032 20.5 7.8 48 32-80 50-97 (204)
301 3qk7_A Transcriptional regulat 35.1 86 0.0029 21.5 5.5 55 33-98 44-99 (294)
302 4djd_C C/Fe-SP, corrinoid/iron 34.4 1.5E+02 0.0053 22.6 9.1 95 26-126 90-209 (446)
303 3gv0_A Transcriptional regulat 34.1 1.1E+02 0.0036 20.9 5.8 58 30-98 41-100 (288)
304 5nul_A Flavodoxin; electron tr 33.9 51 0.0018 19.9 3.7 67 50-121 42-110 (138)
305 3fkq_A NTRC-like two-domain pr 32.5 84 0.0029 22.9 5.2 50 29-81 259-308 (373)
306 2nx2_A Hypothetical protein YP 32.5 69 0.0024 21.0 4.3 15 50-64 127-141 (181)
307 1k68_A Phytochrome response re 32.4 76 0.0026 18.4 6.8 75 53-143 55-129 (140)
308 3jte_A Response regulator rece 32.1 80 0.0027 18.6 7.9 74 53-144 49-122 (143)
309 3d7n_A Flavodoxin, WRBA-like p 31.7 37 0.0013 22.1 2.9 72 49-120 50-124 (193)
310 3heb_A Response regulator rece 31.3 87 0.003 18.8 7.9 76 53-141 59-134 (152)
311 3kht_A Response regulator; PSI 31.2 84 0.0029 18.6 8.5 78 53-147 51-130 (144)
312 1t5b_A Acyl carrier protein ph 31.2 1.1E+02 0.0036 19.7 7.3 74 49-122 82-169 (201)
313 1pq4_A Periplasmic binding pro 30.4 1.4E+02 0.0049 21.0 8.5 67 66-145 220-286 (291)
314 4ici_A Putative flavoprotein; 29.2 98 0.0033 19.7 4.6 43 51-97 85-127 (171)
315 2xzm_U Ribosomal protein L7AE 28.8 1E+02 0.0035 18.8 5.0 17 109-125 58-74 (126)
316 3v7e_A Ribosome-associated pro 28.4 81 0.0028 17.5 4.0 19 108-126 43-61 (82)
317 2ivy_A Hypothetical protein SS 28.0 80 0.0027 18.5 3.6 10 57-66 5-14 (101)
318 2fzv_A Putative arsenical resi 27.4 65 0.0022 22.8 3.6 72 47-120 117-192 (279)
319 3hv2_A Response regulator/HD d 27.3 1E+02 0.0036 18.4 7.3 74 53-144 58-132 (153)
320 2woj_A ATPase GET3; tail-ancho 27.3 1.8E+02 0.0061 21.1 6.9 41 53-98 234-275 (354)
321 1f8y_A Nucleoside 2-deoxyribos 27.3 78 0.0027 20.2 3.7 42 49-96 74-115 (157)
322 3hdg_A Uncharacterized protein 26.4 1E+02 0.0035 17.9 4.6 75 53-145 51-125 (137)
323 2m1z_A LMO0427 protein; homolo 26.2 77 0.0026 18.9 3.3 36 27-64 33-68 (106)
324 1xky_A Dihydrodipicolinate syn 24.9 98 0.0034 22.0 4.3 59 52-115 106-164 (301)
325 1eiw_A Hypothetical protein MT 24.8 63 0.0021 19.4 2.7 39 51-94 36-74 (111)
326 2ehh_A DHDPS, dihydrodipicolin 24.8 1E+02 0.0035 21.8 4.3 70 52-126 94-164 (294)
327 3f6c_A Positive transcription 24.8 1.1E+02 0.0037 17.7 4.6 74 52-143 45-118 (134)
328 2yxg_A DHDPS, dihydrodipicolin 24.8 1E+02 0.0035 21.7 4.3 70 52-126 94-164 (289)
329 3l9w_A Glutathione-regulated p 24.5 1E+02 0.0036 23.0 4.5 49 49-97 288-344 (413)
330 3uc9_A Increased recombination 24.5 12 0.00041 25.9 -0.6 18 55-72 104-121 (233)
331 1ccw_A Protein (glutamate muta 24.4 1.3E+02 0.0044 18.4 8.7 82 52-143 53-134 (137)
332 1tif_A IF3-N, translation init 24.0 56 0.0019 18.4 2.2 27 103-129 27-53 (78)
333 3m5v_A DHDPS, dihydrodipicolin 23.8 1.1E+02 0.0037 21.7 4.3 70 52-126 102-172 (301)
334 3ehd_A Uncharacterized conserv 23.8 1.5E+02 0.0051 19.1 4.6 41 49-95 65-105 (162)
335 3si9_A DHDPS, dihydrodipicolin 23.7 1.1E+02 0.0037 22.0 4.3 70 52-126 116-186 (315)
336 1w3i_A EDA, 2-keto-3-deoxy glu 23.6 1.2E+02 0.004 21.5 4.4 38 52-92 90-128 (293)
337 4e7p_A Response regulator; DNA 23.4 1.3E+02 0.0043 18.0 5.7 46 86-143 93-138 (150)
338 3tak_A DHDPS, dihydrodipicolin 23.4 1.1E+02 0.0038 21.5 4.3 70 52-126 95-164 (291)
339 3eb2_A Putative dihydrodipicol 23.2 2E+02 0.0069 20.3 7.2 70 52-126 98-167 (300)
340 3qze_A DHDPS, dihydrodipicolin 23.2 1.1E+02 0.0038 21.9 4.2 59 52-115 117-175 (314)
341 1o5k_A DHDPS, dihydrodipicolin 23.1 1E+02 0.0035 21.9 4.1 70 52-126 106-176 (306)
342 2prs_A High-affinity zinc upta 23.0 2E+02 0.0067 20.1 6.3 68 66-145 206-279 (284)
343 3cpr_A Dihydrodipicolinate syn 23.0 1.1E+02 0.0039 21.7 4.3 38 52-92 110-147 (304)
344 2wvg_A PDC, pyruvate decarboxy 23.0 1.7E+02 0.0059 22.6 5.6 44 78-125 201-244 (568)
345 3rpe_A MDAB, modulator of drug 22.7 1.8E+02 0.0062 19.6 5.3 35 48-82 78-112 (218)
346 3eul_A Possible nitrate/nitrit 22.7 1.3E+02 0.0045 17.9 6.6 75 53-145 61-135 (152)
347 3cu5_A Two component transcrip 22.6 1E+02 0.0035 18.2 3.6 40 53-98 49-88 (141)
348 2wkj_A N-acetylneuraminate lya 22.6 1.1E+02 0.0038 21.7 4.1 60 52-115 105-164 (303)
349 2ojp_A DHDPS, dihydrodipicolin 22.5 1.1E+02 0.0037 21.6 4.1 59 52-115 95-153 (292)
350 3flu_A DHDPS, dihydrodipicolin 22.4 1.2E+02 0.0041 21.5 4.3 38 52-92 101-138 (297)
351 3s2y_A Chromate reductase; ura 28.1 18 0.00063 24.0 0.0 48 49-96 69-118 (199)
352 2v9d_A YAGE; dihydrodipicolini 22.3 1.2E+02 0.004 22.1 4.3 70 52-126 125-195 (343)
353 2rjn_A Response regulator rece 22.2 1.3E+02 0.0046 17.9 7.1 40 53-98 51-90 (154)
354 3u02_A Putative transcription- 21.8 2.1E+02 0.0072 20.0 8.2 86 51-140 52-151 (252)
355 3cx3_A Lipoprotein; zinc-bindi 21.7 2.1E+02 0.0072 19.9 6.1 68 66-145 209-281 (284)
356 3lq1_A 2-succinyl-5-enolpyruvy 21.6 1.8E+02 0.0062 22.6 5.5 41 78-124 216-256 (578)
357 3klb_A Putative flavoprotein; 21.5 1.3E+02 0.0045 18.8 4.0 44 51-98 76-119 (162)
358 2r8w_A AGR_C_1641P; APC7498, d 21.4 1E+02 0.0034 22.4 3.7 68 52-126 128-197 (332)
359 2rfg_A Dihydrodipicolinate syn 21.3 1.1E+02 0.0036 21.8 3.8 59 52-115 94-152 (297)
360 3l21_A DHDPS, dihydrodipicolin 21.3 1.1E+02 0.0039 21.7 4.0 69 52-125 109-177 (304)
361 3ghf_A Septum site-determining 20.9 1.5E+02 0.0051 17.9 7.3 38 86-127 46-83 (120)
362 1ytl_A Acetyl-COA decarboxylas 20.8 43 0.0015 21.9 1.6 33 86-124 35-67 (174)
363 3cnb_A DNA-binding response re 20.5 1.4E+02 0.0047 17.4 7.3 78 53-146 54-131 (143)
364 3na8_A Putative dihydrodipicol 20.4 1.1E+02 0.0037 22.0 3.7 70 52-126 118-188 (315)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.1e-35 Score=208.17 Aligned_cols=144 Identities=30% Similarity=0.472 Sum_probs=123.6
Q ss_pred cccccccccccccccce-EEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 2 KIESYFVTDYDPTIEDS-YTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 2 ~~~~~f~~~~~pt~~~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
++.+.|.++|.||++.. +.+.+.+++..++++||||+|+++|.++++.|+++++++++|||+++++||+.+..|+..+.
T Consensus 33 ~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~ 112 (216)
T 4dkx_A 33 FMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVR 112 (216)
T ss_dssp HHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred HHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHH
Confidence 46789999999999955 48888899999999999999999999999999999999999999999999999999999998
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
.... +++|++|||||+|+.+.+.++.+++.++|++++++++||||++|.||+++|+.|++.+...
T Consensus 113 ~~~~-~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 113 TERG-SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 177 (216)
T ss_dssp HHHT-TSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC---
T ss_pred HhcC-CCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence 7764 6799999999999999899999999999999999999999999999999999999887643
No 2
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.97 E-value=7e-30 Score=173.36 Aligned_cols=150 Identities=32% Similarity=0.554 Sum_probs=131.8
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+.+.|...+.||++..+...+.+++..+.+++||+||++++..++..+++++|++++|||++++++++.+..|+..+...
T Consensus 27 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~ 106 (181)
T 3t5g_A 27 VEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDM 106 (181)
T ss_dssp HHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 35678899999999888888899999999999999999999888899999999999999999999999999999999887
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccccCCC
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQCKN 152 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~ 152 (159)
....++|+++|+||+|+.+.+.++.+++..+++.++++++++||++|.|++++|+++++.+.+.......
T Consensus 107 ~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~ 176 (181)
T 3t5g_A 107 VGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGACSQ 176 (181)
T ss_dssp C----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC-----C
T ss_pred cCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhcCCccc
Confidence 6656899999999999988889999999999999999999999999999999999999999877655443
No 3
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.97 E-value=4.4e-29 Score=169.71 Aligned_cols=143 Identities=59% Similarity=0.954 Sum_probs=132.7
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+.+.|...+.||++..+...+.+++..+.+++||+||++++..++..+++++|++++|||++++++++.+..|+..+...
T Consensus 39 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 118 (183)
T 3kkq_A 39 FQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRV 118 (183)
T ss_dssp HHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred HhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 35678889999999888888899999999999999999999999999999999999999999999999999999999887
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCC-CCCCHHHHHHHHHHHHHh
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAK-VRINVDQAFHELVRIVLL 145 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~-~~~~i~~~~~~l~~~~~~ 145 (159)
....++|+++|+||+|+.+.+.++.+++..+++.++++++++||+ +|.|++++|+++.+.+.+
T Consensus 119 ~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 119 KDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp HTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred cCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 666789999999999998888899999999999999999999999 999999999999998865
No 4
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.97 E-value=5.4e-29 Score=168.55 Aligned_cols=148 Identities=64% Similarity=1.011 Sum_probs=133.5
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+.+.|..++.||++..+...+.+++..+.+++||+||++++..++..+++++|++++|||+++++++..+..|+..+.+.
T Consensus 30 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 109 (181)
T 2fn4_A 30 IQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRV 109 (181)
T ss_dssp HHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred HhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 35678889999999888888889999999999999999999999999999999999999999999999999999998776
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccccC
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQC 150 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~ 150 (159)
....++|+++|+||+|+.+.+.++.+++..++...+++++++||++|.|++++|+++.+.+.+.....
T Consensus 110 ~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~~ 177 (181)
T 2fn4_A 110 KDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQE 177 (181)
T ss_dssp HTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHTTC-
T ss_pred cCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHhhccC
Confidence 55568899999999999887888888999999999999999999999999999999999998766443
No 5
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.97 E-value=1e-28 Score=170.68 Aligned_cols=144 Identities=50% Similarity=0.816 Sum_probs=132.6
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
.+.|...+.||+++.+...+.+++..+.+.+||+||++++..++..+++++|++++|||+++++++..+..|+..+....
T Consensus 36 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 115 (206)
T 2bov_A 36 YDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK 115 (206)
T ss_dssp HSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT
T ss_pred hCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45688899999998888888889999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
...++|+++|+||+|+.+.+.++.+++..+++.++++++++||++|.|++++|+++++.+.+.+
T Consensus 116 ~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 179 (206)
T 2bov_A 116 EDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 179 (206)
T ss_dssp TCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHcc
Confidence 5568999999999999887888899999999999999999999999999999999999987754
No 6
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.97 E-value=1.3e-28 Score=164.62 Aligned_cols=142 Identities=51% Similarity=0.824 Sum_probs=127.8
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
.+.|...+.||++..+...+.+++..+.+.+||+||++++..++..+++++|++++|||++++++++.+..|+..+....
T Consensus 26 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 105 (168)
T 1u8z_A 26 YDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK 105 (168)
T ss_dssp HSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred hCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45678889999998888788889999999999999999999999999999999999999999999999999999998887
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
...++|+++|+||+|+.+.+.++.+++..+++..+++++++||++|.|++++|+++.+.+.+
T Consensus 106 ~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 106 EDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp CCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 65689999999999998877888899999999999999999999999999999999998764
No 7
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.97 E-value=8.6e-29 Score=171.18 Aligned_cols=145 Identities=31% Similarity=0.464 Sum_probs=122.1
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ ...+.+++..+.+++||++|++++..++..+++++|++|+|||++++++++.+..|+..+..
T Consensus 50 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~ 129 (201)
T 2hup_A 50 KTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRK 129 (201)
T ss_dssp HHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHH
T ss_pred hhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 35667788899998655 78888899989999999999999999999999999999999999999999999999999887
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
... .++|+++|+||+|+.+.+.++.+++.++++.+++ +++++||++|.|++++|+++++.+.+...
T Consensus 130 ~~~-~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~ 196 (201)
T 2hup_A 130 YAG-SNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHG 196 (201)
T ss_dssp HSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred hcC-CCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 653 5789999999999988788889999999999999 89999999999999999999999976543
No 8
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.96 E-value=3.1e-29 Score=170.44 Aligned_cols=147 Identities=31% Similarity=0.515 Sum_probs=112.9
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ ...+.+++..+.+++||+||++++..++..+++++|++++|||++++++++.+..|+..+..
T Consensus 29 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 108 (183)
T 2fu5_C 29 SEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE 108 (183)
T ss_dssp -------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 35667778889998665 67788899999999999999999998889999999999999999999999999999999887
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccccC
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQC 150 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~ 150 (159)
... .++|+++|+||+|+.+.+.++.+++..+++.++++++++||++|.|++++|+++.+.+.+...+.
T Consensus 109 ~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~~~ 176 (183)
T 2fu5_C 109 HAS-ADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKN 176 (183)
T ss_dssp HSC-TTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHHHH
T ss_pred hcC-CCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 643 57899999999999887888889999999999999999999999999999999999988765443
No 9
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.96 E-value=3.8e-29 Score=171.10 Aligned_cols=142 Identities=30% Similarity=0.518 Sum_probs=124.6
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+.+.|.+.+.||+++.+...+.+++..+.+++|||+|++++..+ ..+++++|++++|||++++++++.+..|+..+...
T Consensus 42 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~ 120 (187)
T 3c5c_A 42 LTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALH 120 (187)
T ss_dssp HHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 45678899999999888778888999999999999999998775 67899999999999999999999999999998876
Q ss_pred cC--CCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCC-CCCCCHHHHHHHHHHHHHh
Q psy11289 83 KD--RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSA-KVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 83 ~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa-~~~~~i~~~~~~l~~~~~~ 145 (159)
.. ..++|+++|+||+|+.+.+.++.+++..+++.++++++++|| ++|.|++++|+++++.+.+
T Consensus 121 ~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 121 AKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp HHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred hhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHhh
Confidence 42 247899999999999887889999999999999999999999 8999999999999998754
No 10
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.96 E-value=9.4e-29 Score=165.35 Aligned_cols=142 Identities=49% Similarity=0.833 Sum_probs=129.2
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+.+.|.+.+.||++..+...+.+++..+.+++||+||++++..++..+++++|++++|||++++++++.+..|+..+...
T Consensus 24 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 103 (167)
T 1c1y_A 24 VQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV 103 (167)
T ss_dssp HHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred HcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 35678888999999888878888988999999999999999999999999999999999999999999999999999887
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHc-CCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQL-RIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
....+.|+++|+||+|+.+.+.++.+++..+++.+ +++++++||++|.|++++|+++.+.+.
T Consensus 104 ~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 104 KDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp HCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred hCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 65568999999999999887888888999999988 789999999999999999999998763
No 11
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.96 E-value=2.9e-28 Score=165.76 Aligned_cols=144 Identities=50% Similarity=0.816 Sum_probs=132.5
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
.+.|...+.||++..+...+.+++..+.+.+||+||++++..++..+++++|++++|||+++++++..+..|+..+....
T Consensus 40 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 119 (187)
T 2a9k_A 40 YDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK 119 (187)
T ss_dssp HSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc
Confidence 45688889999998888888889999999999999999999999999999999999999999999999999999998887
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
...++|+++|+||+|+.+.+.++.+++..+++.++++++++||++|.|++++|+++.+.+.+.+
T Consensus 120 ~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 120 EDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 183 (187)
T ss_dssp CCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhh
Confidence 6568999999999999887788888999999999999999999999999999999999987654
No 12
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.96 E-value=1.8e-29 Score=176.22 Aligned_cols=145 Identities=21% Similarity=0.357 Sum_probs=127.8
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHH-HHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEE-IYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~-~~~~~~~i~~ 81 (159)
+.+.|...+.||+++.+...+.+++..+.+++||++|++++..++..+++++|++|+|||+++++++.. +..|+..+..
T Consensus 48 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~ 127 (214)
T 3q3j_B 48 AKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILD 127 (214)
T ss_dssp HHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHH
T ss_pred hcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHH
Confidence 467788999999998888888889999999999999999999999999999999999999999999999 6899999988
Q ss_pred hcCCCCCcEEEEEeCCCCCCc------------CCCCHHHHHHHHHHcCC-cEEEeCCCCCCC-HHHHHHHHHHHHHhcc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQ------------RQVSSMDAQNVARQLRI-PYIECSAKVRIN-VDQAFHELVRIVLLHT 147 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~-i~~~~~~l~~~~~~~~ 147 (159)
.. .++|+++|+||+|+.+. +.++.+++..+++.+++ ++++|||++|.| ++++|+++++.+....
T Consensus 128 ~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 128 YC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp HC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred hC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccC
Confidence 75 67899999999999753 67889999999999999 899999999998 9999999999988665
Q ss_pred cc
Q psy11289 148 KQ 149 (159)
Q Consensus 148 ~~ 149 (159)
..
T Consensus 206 ~~ 207 (214)
T 3q3j_B 206 SP 207 (214)
T ss_dssp --
T ss_pred cC
Confidence 44
No 13
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.96 E-value=2.2e-28 Score=167.04 Aligned_cols=140 Identities=24% Similarity=0.480 Sum_probs=123.4
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+.+.|...+.|| +..+.+.+.+++..+.+++|||+|++++. +++++|++++|||++++++++.+..|+..+...
T Consensus 41 ~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~ 114 (184)
T 3ihw_A 41 LTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSF 114 (184)
T ss_dssp HHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTT
T ss_pred hcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 467788888898 44567888999999999999999999875 788999999999999999999999999999887
Q ss_pred cCCCCCcEEEEEeCCCCC--CcCCCCHHHHHHHHHHcC-CcEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 83 KDRDEFPMLMVGNKADLD--HQRQVSSMDAQNVARQLR-IPYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
....++|+++|+||+|+. ..+.++.+++..+++.++ +++++|||++|.|++++|+++++.+.+.+.
T Consensus 115 ~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 115 RNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRK 183 (184)
T ss_dssp SCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHHhc
Confidence 544678999999999993 567788999999999997 899999999999999999999999887653
No 14
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.96 E-value=2.1e-28 Score=163.37 Aligned_cols=143 Identities=43% Similarity=0.787 Sum_probs=130.7
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+.+.|...+.||+++.+...+.+++..+.+++||+||++++..++..+++++|++++|||++++.+++.+..|+..+...
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~ 103 (167)
T 1kao_A 24 VTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRV 103 (167)
T ss_dssp HHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred HcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 35678888999999888888889999999999999999999999999999999999999999999999999999999887
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
....+.|+++|+||+|+.+.+.++.+++..+++.++++++++||++|.|++++|+++.+.+.+
T Consensus 104 ~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 104 KRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp TTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 655689999999999998778888889999999999999999999999999999999988754
No 15
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.6e-28 Score=169.98 Aligned_cols=145 Identities=29% Similarity=0.463 Sum_probs=130.4
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ ...+.+++..+.+++|||+|++++..++..+++++|++++|||++++++++.+..|+..+..
T Consensus 47 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~ 126 (201)
T 2ew1_A 47 TQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQ 126 (201)
T ss_dssp HHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred HhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 35677888899998555 77888999999999999999999999999999999999999999999999999999999887
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
... .+.|+++|+||+|+.+.+.++.+++..+++..+++++++||++|.|++++|+++++.+.+...
T Consensus 127 ~~~-~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~ 192 (201)
T 2ew1_A 127 YAS-NKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR 192 (201)
T ss_dssp HSC-TTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred hcC-CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 653 578999999999998778888889999999999999999999999999999999999886543
No 16
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.96 E-value=1.1e-28 Score=169.53 Aligned_cols=145 Identities=26% Similarity=0.431 Sum_probs=130.1
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHH-HHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEI-YKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~-~~~~~~i~~ 81 (159)
+.+.|.+.+.||++..+...+.+++..+.+++|||||++++..++..+++++|++++|||++++++++.+ ..|+..+..
T Consensus 44 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 123 (194)
T 3reg_A 44 SKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH 123 (194)
T ss_dssp HHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred hcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 4567888999999998888888999999999999999999999999999999999999999999999997 678888877
Q ss_pred hcCCCCCcEEEEEeCCCCCCc--CCCCHHHHHHHHHHcCCc-EEEeCCCCCCCHHHHHHHHHHHHHhcccc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQ--RQVSSMDAQNVARQLRIP-YIECSAKVRINVDQAFHELVRIVLLHTKQ 149 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 149 (159)
.. .++|+++|+||+|+.+. +.+..+++..+++.++++ ++++||++|.|++++|+++++.+.+.+..
T Consensus 124 ~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 192 (194)
T 3reg_A 124 YI--DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNKPV 192 (194)
T ss_dssp HC--TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCSCC-
T ss_pred hC--CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhcCCC
Confidence 64 67899999999999753 678889999999999998 99999999999999999999999876543
No 17
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.96 E-value=5.4e-28 Score=166.52 Aligned_cols=139 Identities=29% Similarity=0.497 Sum_probs=121.8
Q ss_pred cccccc-ceEEEEEEECCeeEEEEEEeCCCcccchH-HHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCC
Q psy11289 11 YDPTIE-DSYTKQCVIDDIPARLDILDTAGQEEFSA-MREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEF 88 (159)
Q Consensus 11 ~~pt~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 88 (159)
+.|+++ +.+...+.+++..+.+++||++|++++.. ++..+++++|++|+|||++++++|..+..|+..+.......++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 131 (195)
T 3cbq_A 52 HEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDL 131 (195)
T ss_dssp GTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCC
T ss_pred CCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 445555 55677888999999999999999998765 7888999999999999999999999999999998876544578
Q ss_pred cEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcccc
Q psy11289 89 PMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQ 149 (159)
Q Consensus 89 p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 149 (159)
|+++|+||+|+.+.+.++.+++..+++.++++++++||++|.|++++|+++++.+.+...+
T Consensus 132 piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~~~ 192 (195)
T 3cbq_A 132 PVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGR 192 (195)
T ss_dssp CEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHTTC--
T ss_pred CEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 9999999999988788889999999999999999999999999999999999998765543
No 18
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.96 E-value=4.8e-28 Score=166.13 Aligned_cols=148 Identities=30% Similarity=0.510 Sum_probs=131.7
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ ...+.+++..+.+++||+||++++..++..+++++|++++|||++++.+++.+..|+..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 116 (196)
T 3tkl_A 37 ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR 116 (196)
T ss_dssp HHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred HcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 35677788889998555 78888899999999999999999999999999999999999999999999999999999888
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccccCC
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQCK 151 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~ 151 (159)
... .+.|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|+++.+.+.+......
T Consensus 117 ~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~~~ 185 (196)
T 3tkl_A 117 YAS-ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGA 185 (196)
T ss_dssp HSC-TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC----
T ss_pred hcC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHhcccc
Confidence 754 578999999999998888899999999999999999999999999999999999999988776543
No 19
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=3.2e-28 Score=167.46 Aligned_cols=144 Identities=43% Similarity=0.705 Sum_probs=131.2
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+.+.|...+.||++..+...+.+++..+.+++||+||+++ ...+..+++++|++++|||++++++++.+..|+..+...
T Consensus 49 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~ 127 (196)
T 2atv_A 49 LTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEI 127 (196)
T ss_dssp HHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred HhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 3567888899999988888888899999999999999988 778899999999999999999999999999999999887
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCC-CHHHHHHHHHHHHHhcc
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRI-NVDQAFHELVRIVLLHT 147 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~-~i~~~~~~l~~~~~~~~ 147 (159)
....++|+++|+||+|+.+.+.++.+++..+++.++++++++||++|. |++++|+++++.+.+..
T Consensus 128 ~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 128 KKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp HTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred hCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhhc
Confidence 655689999999999998878888999999999999999999999999 99999999999987654
No 20
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.96 E-value=3.9e-28 Score=165.45 Aligned_cols=144 Identities=58% Similarity=0.896 Sum_probs=128.3
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+.+.|...+.||+++.+...+.+++..+.+++||+||++++..++..+++++|++++|||++++++++.+..|+..+...
T Consensus 25 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~ 104 (189)
T 4dsu_A 25 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104 (189)
T ss_dssp HHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 35678889999999888888899999999999999999999999999999999999999999999999999999999887
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
....+.|+++|+||+|+.+ +....+++..+++.++++++++||++|.|++++|+++.+.+.+..
T Consensus 105 ~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 168 (189)
T 4dsu_A 105 KDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK 168 (189)
T ss_dssp TTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhh
Confidence 7667899999999999974 566788899999999999999999999999999999999887554
No 21
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.96 E-value=3.3e-29 Score=174.28 Aligned_cols=146 Identities=31% Similarity=0.587 Sum_probs=125.6
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH-HHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY-KFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~~ 81 (159)
+.+.|..++.||+++.+...+.+++..+.+++||+||+++|..++..+++++|++++|||++++++++.+. .|+..+..
T Consensus 30 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~ 109 (212)
T 2j0v_A 30 TSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRR 109 (212)
T ss_dssp HHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred hcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 45678889999999888888888999999999999999999999999999999999999999999999997 89998887
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCC--------CCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHHHhccccC
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQ--------VSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRIVLLHTKQC 150 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~ 150 (159)
.. +++|+++|+||+|+.+.+. ++.+++..+++.+++ +++++||++|.|++++|+++++.+.+.....
T Consensus 110 ~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~ 185 (212)
T 2j0v_A 110 FA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 185 (212)
T ss_dssp HC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC----
T ss_pred hC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhhhhc
Confidence 64 5789999999999865443 478888999999996 8999999999999999999999998765443
No 22
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.96 E-value=1.8e-28 Score=169.10 Aligned_cols=144 Identities=30% Similarity=0.507 Sum_probs=122.3
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH-HHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY-KFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~~ 81 (159)
+.+.|...+.||+++.+...+.+++..+.+++||++|++++..++..+++++|++++|||+++++++..+. .|+..+..
T Consensus 41 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~ 120 (201)
T 2q3h_A 41 TTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRC 120 (201)
T ss_dssp HC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred HhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 35668889999999888888889999999999999999999988999999999999999999999999997 79988887
Q ss_pred hcCCCCCcEEEEEeCCCCCC------------cCCCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 82 VKDRDEFPMLMVGNKADLDH------------QRQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
.. .++|+++|+||+|+.+ .+.++.+++..+++.+++ ++++|||++|.|++++|+++++.+.+...
T Consensus 121 ~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 121 HC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp HC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred hC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 65 5789999999999965 356788889999999997 89999999999999999999999886653
No 23
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.96 E-value=4.2e-28 Score=162.23 Aligned_cols=138 Identities=30% Similarity=0.460 Sum_probs=104.7
Q ss_pred ccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCC
Q psy11289 9 TDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEF 88 (159)
Q Consensus 9 ~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 88 (159)
....|+.+..+...+.+++..+.+++||++|++++..++..+++++|++++|||++++++++.+..|+..+.......++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 107 (166)
T 3q72_A 28 GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDV 107 (166)
T ss_dssp --------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CC
T ss_pred cCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 35567777777778888999999999999999999999999999999999999999999999999999999886555689
Q ss_pred cEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 89 PMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 89 p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
|+++|+||+|+.+.+.++.+++..++...+++++++||++|.|++++|+++.+.+.++
T Consensus 108 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 108 PIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp CEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred CEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999988888999999999999999999999999999999999999988764
No 24
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2.6e-28 Score=167.51 Aligned_cols=141 Identities=26% Similarity=0.486 Sum_probs=126.9
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH-HHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY-KFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~~ 81 (159)
+.+.|.+++.||+++.+...+.+++..+.+++||+||++++..++..+++++|++++|||+++++++..+. .|+..+..
T Consensus 39 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 118 (194)
T 2atx_A 39 ANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKE 118 (194)
T ss_dssp HHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred hcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 35678889999999888888888998899999999999999999999999999999999999999999997 79988887
Q ss_pred hcCCCCCcEEEEEeCCCCCCc------------CCCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQ------------RQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
.. .++|+++|+||+|+.+. +.++.+++..+++.+++ +++++||++|.|++++|+++++.++.
T Consensus 119 ~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 119 YA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp HS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred hC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 64 57899999999999653 46888899999999997 89999999999999999999998764
No 25
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.96 E-value=4.1e-28 Score=166.26 Aligned_cols=145 Identities=28% Similarity=0.491 Sum_probs=125.6
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ ...+.+++..+.+++||+||++++..++..+++++|++++|||++++++++.+..|+..+..
T Consensus 42 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~ 121 (191)
T 2a5j_A 42 TDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ 121 (191)
T ss_dssp HHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred hcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 34567778889988665 67788899999999999999999998999999999999999999999999999999999887
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
... .+.|+++|+||+|+.+.+.++.+++..+++..+++++++||++|.|++++|+++++.+.++..
T Consensus 122 ~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 187 (191)
T 2a5j_A 122 HSS-SNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQ 187 (191)
T ss_dssp HSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred hcC-CCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 643 578999999999998778888889999999999999999999999999999999999987653
No 26
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.96 E-value=4.2e-29 Score=172.57 Aligned_cols=151 Identities=27% Similarity=0.502 Sum_probs=126.2
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+.+.|...+.||++..+...+.+++..+.+++||+||++++..++..+++++|++++|||++++++++.+..|+..+...
T Consensus 45 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 124 (201)
T 3oes_A 45 VEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEG 124 (201)
T ss_dssp HHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-
T ss_pred HhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 45678889999999888777788888899999999999999988999999999999999999999999999999999887
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccccCCCC
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQCKNS 153 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~ 153 (159)
....++|+++|+||+|+.+.+.++..++..+++.++++++++||++|.|++++|+++.+.+.+.......+
T Consensus 125 ~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~~~~~~ 195 (201)
T 3oes_A 125 HGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENSYGQE 195 (201)
T ss_dssp ----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC-------
T ss_pred cCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhhhhhccc
Confidence 65568899999999999888889999999999999999999999999999999999999998777654433
No 27
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.96 E-value=1.1e-27 Score=161.90 Aligned_cols=142 Identities=30% Similarity=0.503 Sum_probs=127.6
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ ...+.+++..+.+.+||+||++++...+..+++++|++++|||++++.+++.+..|+..+..
T Consensus 36 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 115 (179)
T 1z0f_A 36 TEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN 115 (179)
T ss_dssp HHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred HcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHH
Confidence 34667888899999665 77788899999999999999999999999999999999999999999999999999998887
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
... .+.|+++|+||+|+.+.+.++.+++.++++.++++++++||++|.|++++|+++++.+.+
T Consensus 116 ~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 116 LTN-PNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp HSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred hcC-CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 653 578999999999998778888889999999999999999999999999999999988754
No 28
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.96 E-value=9.8e-28 Score=162.36 Aligned_cols=140 Identities=24% Similarity=0.456 Sum_probs=120.5
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+.+.|.+ +.||+++.+.+.+.+++..+.+++||++|+++ ..+++++|++++|||++++++++.+..|+..+...
T Consensus 28 ~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~ 101 (178)
T 2iwr_A 28 LTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSL 101 (178)
T ss_dssp HHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHH
Confidence 3566766 88999988888889999999999999999987 46788999999999999999999999987766665
Q ss_pred cC--CCCCcEEEEEeCCCCC--CcCCCCHHHHHHHHHHc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 83 KD--RDEFPMLMVGNKADLD--HQRQVSSMDAQNVARQL-RIPYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 83 ~~--~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
.. ..++|+++|+||+|+. ..+.++.+++..+++.. +++++++||++|.|++++|+++++.+.+...
T Consensus 102 ~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 172 (178)
T 2iwr_A 102 RGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRK 172 (178)
T ss_dssp HCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHHHh
Confidence 43 2478999999999994 45678888999999887 6899999999999999999999999876553
No 29
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.96 E-value=1.2e-27 Score=162.85 Aligned_cols=146 Identities=29% Similarity=0.486 Sum_probs=130.5
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ ...+.+++..+.+++||+||++++...+..+++++|++++|||++++++++.+..|+..+..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 110 (186)
T 2bme_A 31 IEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARM 110 (186)
T ss_dssp HHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred HcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 34667788889998555 77788899989999999999999999999999999999999999999999999999988877
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcccc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQ 149 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 149 (159)
... .+.|+++|+||+|+.+.+.++..++..+++..+++++++||++|.|++++|+++.+.+.+....
T Consensus 111 ~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 177 (186)
T 2bme_A 111 LAS-QNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 177 (186)
T ss_dssp HSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHS
T ss_pred hcC-CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 653 5789999999999987788888899999999999999999999999999999999999876544
No 30
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.96 E-value=1.5e-27 Score=161.58 Aligned_cols=143 Identities=30% Similarity=0.482 Sum_probs=126.7
Q ss_pred cccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 4 ESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
.+.|...+.||++..+ ...+.+++..+.+++||+||++++...+..+++++|++++|||++++.+++.+..|+..+...
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 113 (181)
T 2efe_B 34 KDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQ 113 (181)
T ss_dssp HCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 4567777889998655 777888999999999999999999999999999999999999999999999999999998887
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.. ++.|+++|+||+|+.+.+.++.+++..+++..+++++++||++|.|++++|+++.+.+.+..
T Consensus 114 ~~-~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 114 GN-PNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQ 177 (181)
T ss_dssp SC-TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC---
T ss_pred cC-CCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 53 57899999999999877888889999999999999999999999999999999998775543
No 31
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1e-27 Score=167.19 Aligned_cols=143 Identities=31% Similarity=0.502 Sum_probs=119.7
Q ss_pred ccccccccccccceEEEEEEECCeeEEEEEEeCCCccc-chHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 5 SYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEE-FSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 5 ~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
..|.+.++|+..+.+.+.+.+++..+.+.+|||+|++. +..+...+++.++++++|||++++++|+.+..|+..+....
T Consensus 62 ~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~ 141 (211)
T 2g3y_A 62 DSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR 141 (211)
T ss_dssp CTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSG
T ss_pred CCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence 44566666544465688888999999999999999987 45566777889999999999999999999999988887643
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
...++|+++||||+|+.+.+.++.+++..++..+++++++|||++|.||+++|+++++.+....
T Consensus 142 ~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 142 QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR 205 (211)
T ss_dssp GGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 3357899999999999877888888888999999999999999999999999999999886543
No 32
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.96 E-value=1.4e-27 Score=160.18 Aligned_cols=141 Identities=28% Similarity=0.434 Sum_probs=113.3
Q ss_pred ccccccccccc-ceEEEEEEECCeeEEEEEEeCCCcccchH-HHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 6 YFVTDYDPTIE-DSYTKQCVIDDIPARLDILDTAGQEEFSA-MREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 6 ~f~~~~~pt~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
.+...+.++.+ +.+...+.+++..+.+.+||++|++++.. ++..+++++|++++|||++++++++.+..|+..+....
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 105 (169)
T 3q85_A 26 QGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGR 105 (169)
T ss_dssp ------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHS
T ss_pred cCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcc
Confidence 34444444444 55578888999999999999999998876 77788999999999999999999999999999998876
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
...++|+++|+||+|+.+.+.++.+++..+++.++++++++||++|.|++++|+++++.+..+
T Consensus 106 ~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 106 PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred cCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence 555899999999999988888999999999999999999999999999999999999988764
No 33
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.96 E-value=8.1e-28 Score=162.74 Aligned_cols=146 Identities=31% Similarity=0.475 Sum_probs=128.8
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ ...+.+++..+.+.+||+||++++..++..+++++|++++|||++++.++..+..|+..+..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 109 (181)
T 3tw8_B 30 ADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ 109 (181)
T ss_dssp CSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 34567778889988555 78888899999999999999999998999999999999999999999999999999999987
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccccC
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQC 150 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~ 150 (159)
.. .+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++.+.+.+...+.
T Consensus 110 ~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 110 NC--DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDN 176 (181)
T ss_dssp HC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred hC--CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 65 57899999999999888888889999999999999999999999999999999999988766443
No 34
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.96 E-value=2.2e-27 Score=159.92 Aligned_cols=142 Identities=30% Similarity=0.440 Sum_probs=113.5
Q ss_pred cccccccccccc-ceEEEEEEECCeeEEEEEEeCCCccc--chHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 5 SYFVTDYDPTIE-DSYTKQCVIDDIPARLDILDTAGQEE--FSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 5 ~~f~~~~~pt~~-~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+...+ ++++ +.+...+.+++..+.+++||++|+++ +..+...+++.+|++++|||++++++++.+..|+..+..
T Consensus 27 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~ 105 (175)
T 2nzj_A 27 KQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRR 105 (175)
T ss_dssp C-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred CCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 3444333 4555 44577888899999999999999988 566778889999999999999999999999999988887
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.....++|+++|+||+|+.+.+.++.+++..++..++++++++||++|.|++++|+++.+.+.+.+
T Consensus 106 ~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 171 (175)
T 2nzj_A 106 THQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRR 171 (175)
T ss_dssp CC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred hhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 644457899999999999887888888899999999999999999999999999999999987654
No 35
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.96 E-value=8.2e-28 Score=162.54 Aligned_cols=145 Identities=24% Similarity=0.367 Sum_probs=125.3
Q ss_pred ccccccccccccccc-eEEEEEEECC-eeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 3 IESYFVTDYDPTIED-SYTKQCVIDD-IPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~-~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
+.+.|.+.+.||++. .+...+.+++ ..+.+++||+||++++..++..+++++|++++|||++++++++.+..|+..+.
T Consensus 27 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~ 106 (178)
T 2hxs_A 27 AQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVK 106 (178)
T ss_dssp HGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred HhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 355677788999984 4577888876 67889999999999999999999999999999999999999999999998887
Q ss_pred hhcC-CCCCc-EEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 81 RVKD-RDEFP-MLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 81 ~~~~-~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.... ..+.| +++|+||+|+.+.+.++.+++..+++.++++++++||++|.|++++|+++.+.+.+..
T Consensus 107 ~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 107 KVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp HHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTTCC
T ss_pred HHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 7531 12345 7899999999887888888999999999999999999999999999999999886554
No 36
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=3.7e-28 Score=166.49 Aligned_cols=145 Identities=30% Similarity=0.501 Sum_probs=130.2
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ ...+..++..+.+++||++|++++..++..+++++|++++|||++++++++.+..|+..+..
T Consensus 44 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 123 (191)
T 3dz8_A 44 ADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKT 123 (191)
T ss_dssp HHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred hcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 34567788889998555 77788888888999999999999999999999999999999999999999999999999988
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
... .++|+++|+||+|+.+.+.+..+++..+++.++++++++||++|.|++++|+++++.+.+...
T Consensus 124 ~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 124 YSW-DNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189 (191)
T ss_dssp HSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred hcC-CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 653 578999999999998888888999999999999999999999999999999999999887654
No 37
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.96 E-value=5.9e-28 Score=168.47 Aligned_cols=144 Identities=30% Similarity=0.559 Sum_probs=108.0
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH-HHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY-KFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~~ 81 (159)
+.+.|...+.||+++.+...+.+++..+.+++|||||++++..++..+++++|++++|||++++.+++.+. .|+..+..
T Consensus 55 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 134 (214)
T 2j1l_A 55 ADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNH 134 (214)
T ss_dssp HC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred HcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHH
Confidence 35677888999999888888889999999999999999999999999999999999999999999999997 79888877
Q ss_pred hcCCCCCcEEEEEeCCCCCCc------------CCCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQ------------RQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
.. .++|+++|+||+|+.+. +.++.+++..+++.+++ +++++||++|.|++++|+++++.+.+...
T Consensus 135 ~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 135 FC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp HC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC--
T ss_pred hC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 64 57899999999999754 36778889999999997 89999999999999999999999986653
No 38
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.96 E-value=2.3e-27 Score=163.78 Aligned_cols=144 Identities=31% Similarity=0.530 Sum_probs=129.3
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ ...+..++..+.+++||+||++++..++..+++++|++|+|||++++++++.+..|+..+..
T Consensus 29 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~ 108 (203)
T 1zbd_A 29 ADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT 108 (203)
T ss_dssp HTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 35677788899998665 67778899999999999999999999999999999999999999999999999999999877
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.. ..+.|+++|+||+|+.+.+.++.+++..+++.++++++++||++|.|++++|+++.+.+.+..
T Consensus 109 ~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 173 (203)
T 1zbd_A 109 YS-WDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKM 173 (203)
T ss_dssp HS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHHH
T ss_pred hc-CCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 64 357899999999999887888888999999999999999999999999999999999887654
No 39
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.96 E-value=1.6e-27 Score=163.01 Aligned_cols=142 Identities=27% Similarity=0.394 Sum_probs=125.5
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccch-HHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFS-AMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
+.+.|...+.||++..+ ...+.+++..+.+++||+||++++. .++..+++++|++++|||++++.+++.+..|+..+.
T Consensus 41 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~ 120 (189)
T 1z06_A 41 CAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECK 120 (189)
T ss_dssp HHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred HcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 35677788899998655 7788889998999999999999998 889999999999999999999999999999999998
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCC---CCHHHHHHHHHHHHH
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVR---INVDQAFHELVRIVL 144 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~---~~i~~~~~~l~~~~~ 144 (159)
......+.|+++|+||+|+.+.+.++.+++..+++.++++++++||++| .|+.++|+++++.+.
T Consensus 121 ~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 121 QHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp HHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred HhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 8765568999999999999887888889999999999999999999999 999999999988764
No 40
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.96 E-value=5.8e-28 Score=164.21 Aligned_cols=143 Identities=28% Similarity=0.498 Sum_probs=127.6
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH-HHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY-KFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~~ 81 (159)
+.+.|.+.+.||+++.+...+.+++..+.+++||+||++++..++..+++++|++++|||++++.++..+. .|+..+..
T Consensus 26 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 105 (186)
T 1mh1_A 26 TTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 105 (186)
T ss_dssp HHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred HcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHH
Confidence 35678889999999888888889999999999999999999988899999999999999999999999997 79888877
Q ss_pred hcCCCCCcEEEEEeCCCCCCc------------CCCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQ------------RQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.. .+.|+++|+||+|+.+. +.++.+++..+++.+++ +++++||++|.|++++|+++.+.+.+..
T Consensus 106 ~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 106 HC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp HS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred hC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhccc
Confidence 64 47899999999998653 56788889999999997 8999999999999999999999886543
No 41
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.96 E-value=2.5e-27 Score=161.97 Aligned_cols=147 Identities=26% Similarity=0.467 Sum_probs=129.8
Q ss_pred cccccccccccccceE--EEEEEECCe---------eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHH
Q psy11289 4 ESYFVTDYDPTIEDSY--TKQCVIDDI---------PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEI 72 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~--~~~~~~~~~---------~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~ 72 (159)
.+.|.+.+.||++..+ ...+..++. .+.+++||+||++++...+..+++++|++++|||++++.++..+
T Consensus 33 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 112 (195)
T 3bc1_A 33 DGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV 112 (195)
T ss_dssp HSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTH
T ss_pred cCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHH
Confidence 4567788889998665 456666665 78899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccccC
Q psy11289 73 YKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQC 150 (159)
Q Consensus 73 ~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~ 150 (159)
..|+..+.......++|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|+++.+.+.+...+.
T Consensus 113 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~ 190 (195)
T 3bc1_A 113 RNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMERS 190 (195)
T ss_dssp HHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 999999988765567899999999999887788888999999999999999999999999999999999998766543
No 42
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.96 E-value=1.8e-27 Score=159.45 Aligned_cols=140 Identities=27% Similarity=0.502 Sum_probs=125.9
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|.+.+.||++..+ ...+.+++..+.+++||+||++++...+..+++++|++++|||++++.++..+..|+..+..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 106 (170)
T 1r2q_A 27 VKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR 106 (170)
T ss_dssp HHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 34677778889998665 67788899899999999999999999999999999999999999999999999999999887
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
... ++.|+++|+||+|+.+.+.++.+++..++...+++++++||++|.|++++|+++.+.+
T Consensus 107 ~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 107 QAS-PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp HSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred hcC-CCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 643 5789999999999987778888899999999999999999999999999999998765
No 43
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.96 E-value=1.8e-27 Score=164.78 Aligned_cols=144 Identities=32% Similarity=0.504 Sum_probs=129.6
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ ...+.+++..+.+++||+||++++..++..+++++|++|+|||++++.++..+..|+..+..
T Consensus 29 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~ 108 (206)
T 2bcg_Y 29 SDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDR 108 (206)
T ss_dssp HHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 34667788899999665 67788899999999999999999998899999999999999999999999999999999887
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++.+.+.+..
T Consensus 109 ~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 109 YAT-STVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESM 173 (206)
T ss_dssp HSC-TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred hcC-CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 653 57899999999999887888888999999999999999999999999999999999887654
No 44
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.96 E-value=6e-28 Score=161.96 Aligned_cols=141 Identities=30% Similarity=0.483 Sum_probs=120.3
Q ss_pred cccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 4 ESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
.+.|.+.+.||++..+ ...+.+++..+.+.+||+||++++..++..+++++|++++|||++++++++.+..|+..+...
T Consensus 28 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 107 (170)
T 1z08_A 28 ENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM 107 (170)
T ss_dssp HCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 4567778889999666 677888999999999999999999988999999999999999999999999999999988776
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
.. .+.|+++|+||+|+.+.+.++.+++..+++..+++++++||++|.|++++|+++.+.+.+
T Consensus 108 ~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 108 LG-NEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp HG-GGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred cC-CCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHhh
Confidence 53 478999999999998878888889999999999999999999999999999999998754
No 45
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.96 E-value=1.1e-26 Score=154.75 Aligned_cols=141 Identities=58% Similarity=0.883 Sum_probs=127.6
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
.+.|...+.||+++.+...+..++..+.+.+||+||++++...+..+++.+|++++|||++++.++..+..|+..+....
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~ 104 (166)
T 2ce2_X 25 QNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK 104 (166)
T ss_dssp HSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred hCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45677888999998888888889999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
...+.|+++|+||+|+.+ +....++..++++.++++++++||++|.|++++|+++.+.+.+
T Consensus 105 ~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 105 DSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp TCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 555799999999999876 5567888899999999999999999999999999999998754
No 46
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=1.7e-27 Score=159.48 Aligned_cols=140 Identities=26% Similarity=0.490 Sum_probs=125.2
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|.+.+.||++..+ ...+.+++..+.+++||+||++++...+..+++++|++++|||++++.++..+..|+..+..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 103 (170)
T 1ek0_A 24 VSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHE 103 (170)
T ss_dssp HHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHH
Confidence 34667788899999665 67788899999999999999999999999999999999999999999999999999999887
Q ss_pred hcCCCCCcEEEEEeCCCCCCc---CCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQ---RQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
... .+.|+++|+||+|+.+. +.+..+++..+++..+++++++||++|.|++++|+++.+.+
T Consensus 104 ~~~-~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 104 QAS-KDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp HSC-TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred hcC-CCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 653 57899999999999765 67888889999999999999999999999999999998765
No 47
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=3.4e-27 Score=159.74 Aligned_cols=143 Identities=29% Similarity=0.553 Sum_probs=118.5
Q ss_pred cccc-cccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 4 ESYF-VTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 4 ~~~f-~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
.+.| ...+.||++..+ ...+.+++..+.+++||+||++++..++..+++++|++++|||++++.+++.+..|+..+..
T Consensus 32 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~ 111 (180)
T 2g6b_A 32 DGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHE 111 (180)
T ss_dssp HSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred hCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 3445 357789998666 56678899999999999999999999999999999999999999999999999999999888
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
... .+.|+++|+||+|+.+.+.+..+++..+++.++++++++||++|.|++++|+++.+.+.+..
T Consensus 112 ~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 112 YAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRS 176 (180)
T ss_dssp HSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC--
T ss_pred hCC-CCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 754 57899999999999887888888999999999999999999999999999999999887543
No 48
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.5e-27 Score=162.61 Aligned_cols=143 Identities=30% Similarity=0.547 Sum_probs=120.7
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ ...+.+++..+.+++||++|++++..++..+++++|++|+|||++++.+++.+..|+..+..
T Consensus 47 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~ 126 (192)
T 2il1_A 47 TDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDK 126 (192)
T ss_dssp CC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred hcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 35567778889998554 77888899999999999999999999999999999999999999999999999999988877
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQL-RIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
... .+.|+++|+||+|+.+.+.++.+++..+++.+ +++++++||++|.|++++|+++.+.+.++
T Consensus 127 ~~~-~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 127 YAS-EDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191 (192)
T ss_dssp HSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred hcC-CCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 643 57899999999999887888888899999885 78999999999999999999999988653
No 49
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.96 E-value=3.4e-28 Score=165.75 Aligned_cols=141 Identities=27% Similarity=0.435 Sum_probs=125.4
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHH-HHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEI-YKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~-~~~~~~i~~ 81 (159)
+.+.|...+.||++..+...+.+++..+.+++||+||+++|..++..+++++|++++|||++++++++.+ ..|+..+..
T Consensus 28 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~ 107 (184)
T 1m7b_A 28 AKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE 107 (184)
T ss_dssp HHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred hcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 3567888899999988877888899899999999999999998899999999999999999999999998 689888877
Q ss_pred hcCCCCCcEEEEEeCCCCCCc------------CCCCHHHHHHHHHHcC-CcEEEeCCC-CCCCHHHHHHHHHHHHHh
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQ------------RQVSSMDAQNVARQLR-IPYIECSAK-VRINVDQAFHELVRIVLL 145 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~sa~-~~~~i~~~~~~l~~~~~~ 145 (159)
.. ++.|+++|+||+|+.+. +.++.+++..+++.++ +++++|||+ +|.|++++|+++++.+++
T Consensus 108 ~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 108 FC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp HC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred HC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 64 57899999999999742 5688889999999988 789999999 689999999999998864
No 50
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.96 E-value=2e-27 Score=162.49 Aligned_cols=144 Identities=31% Similarity=0.540 Sum_probs=128.5
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ ...+..++..+.+++||+||++++...+..+++++|++++|||++++.+++.+..|+..+..
T Consensus 43 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~ 122 (189)
T 2gf9_A 43 ADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKT 122 (189)
T ss_dssp HHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred HcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 35667788889998665 67778889899999999999999998899999999999999999999999999999999887
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.. ..+.|+++|+||+|+.+.+.++.+++..+++.++++++++||++|.|++++|+++.+.+.+..
T Consensus 123 ~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 187 (189)
T 2gf9_A 123 YS-WDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKM 187 (189)
T ss_dssp HS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred hc-CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 64 257899999999999887888888999999999999999999999999999999999887643
No 51
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.96 E-value=1.5e-27 Score=164.82 Aligned_cols=147 Identities=29% Similarity=0.487 Sum_probs=121.0
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ ...+.+++..+.+++||++|++++..++..+++++|++|+|||++++.+++.+..|+..+..
T Consensus 46 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 125 (200)
T 2o52_A 46 IENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDART 125 (200)
T ss_dssp HC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred HhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 35667778889998555 77788899989999999999999988899999999999999999999999999999998877
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccccC
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQC 150 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~ 150 (159)
... .++|+++|+||+|+.+.+.++..++..+++..+++++++||++|.|++++|+++++.+.+.....
T Consensus 126 ~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~ 193 (200)
T 2o52_A 126 LAS-PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSG 193 (200)
T ss_dssp HTC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHTT
T ss_pred hcC-CCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 653 57899999999999877888888999999999999999999999999999999999998766444
No 52
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.95 E-value=1.9e-27 Score=159.14 Aligned_cols=140 Identities=34% Similarity=0.551 Sum_probs=127.1
Q ss_pred cccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 4 ESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
.+.|...+.||++..+ ...+.+++..+.+.+||+||++++..++..+++++|++++|||++++++++.+..|+..+...
T Consensus 27 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 106 (168)
T 1z2a_A 27 KGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE 106 (168)
T ss_dssp HCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred cCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 4567788899998554 788888999999999999999999888999999999999999999999999999999998887
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
. .+.|+++|+||+|+.+.+.++.+++..+++.++++++++||++|.|++++|+++.+.+.+
T Consensus 107 ~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 107 V--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp H--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred C--CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 6 678999999999998777888889999999999999999999999999999999998764
No 53
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.95 E-value=2.6e-27 Score=163.34 Aligned_cols=142 Identities=30% Similarity=0.433 Sum_probs=116.2
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ ...+.+++..+.+++||+||++++..++..+++++|++|+|||++++.+++.+..|+..+..
T Consensus 49 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~ 128 (199)
T 2p5s_A 49 CKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIED 128 (199)
T ss_dssp HHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred HhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHH
Confidence 34567778889998555 67888899999999999999999999999999999999999999999999999999988877
Q ss_pred hcCCCCCcEEEEEeCCCCC------CcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 82 VKDRDEFPMLMVGNKADLD------HQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
... .++|+++|+||+|+. ..+.+..+++..+++..+++++++||++|.|++++|+++++.+.+
T Consensus 129 ~~~-~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 129 AAH-ETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp HC----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred hcC-CCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 643 478999999999996 456788888999999999999999999999999999999998754
No 54
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.95 E-value=9.4e-27 Score=159.11 Aligned_cols=143 Identities=55% Similarity=0.850 Sum_probs=119.1
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
.+.|...+.||+++.+...+.+++..+.+.+||+||++++..++..+++.+|++++|||++++.++..+..|+..+....
T Consensus 43 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 122 (190)
T 3con_A 43 QNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVK 122 (190)
T ss_dssp HSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHh
Confidence 45677888999998888888899999999999999999999999999999999999999999999999999999988876
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
...++|+++|+||+|+.+ +.+..+++.++++.++++++++||++|.|++++|+++.+.+.+.+
T Consensus 123 ~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 185 (190)
T 3con_A 123 DSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYR 185 (190)
T ss_dssp TCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred CCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 555789999999999876 567788899999999999999999999999999999999987654
No 55
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.95 E-value=1e-27 Score=167.22 Aligned_cols=147 Identities=30% Similarity=0.517 Sum_probs=127.9
Q ss_pred ccccccccccccccceE-EEEEEECCe----------eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHH
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDI----------PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEE 71 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~----------~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~ 71 (159)
+.+.|...+.||++..+ .+.+.+++. .+.++|||++|++++...+..+++++|++|+|||++++.+++.
T Consensus 46 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~ 125 (217)
T 2f7s_A 46 TDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLN 125 (217)
T ss_dssp HCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHH
T ss_pred hcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHH
Confidence 35667788889998665 667777765 7889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcccc
Q psy11289 72 IYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQ 149 (159)
Q Consensus 72 ~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 149 (159)
+..|+..+.......++|+++|+||+|+.+.+.++.+++..+++.++++++++||++|.|++++|+++.+.+.+....
T Consensus 126 ~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~ 203 (217)
T 2f7s_A 126 VRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQ 203 (217)
T ss_dssp HHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHhhc
Confidence 999988876654435789999999999988788888999999999999999999999999999999999998875433
No 56
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.95 E-value=4.7e-27 Score=161.06 Aligned_cols=144 Identities=26% Similarity=0.462 Sum_probs=128.6
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ ...+.+++..+.+.+||+||++++..++..+++++|++|+|||++++.++..+..|+..+..
T Consensus 46 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~ 125 (193)
T 2oil_A 46 TRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYD 125 (193)
T ss_dssp HHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHT
T ss_pred hcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 34567778889998665 67788899999999999999999999999999999999999999999999999999998877
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++.+.+.+..
T Consensus 126 ~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 126 HAE-ATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 190 (193)
T ss_dssp TSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred hcC-CCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 543 57899999999999877788888999999999999999999999999999999999887654
No 57
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=7.7e-27 Score=159.86 Aligned_cols=144 Identities=31% Similarity=0.502 Sum_probs=128.3
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ ...+.+++..+.+.+||+||++++..++..+++++|++++|||++++.++..+..|+..+..
T Consensus 36 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~ 115 (195)
T 1x3s_A 36 TDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELET 115 (195)
T ss_dssp HHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTT
T ss_pred HcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 35667788899998665 67788899999999999999999999999999999999999999999999999999999887
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.....++|+++|+||+|+. .+.+..+++..+++..+++++++||++|.|++++|+++.+.+.+..
T Consensus 116 ~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 116 YCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp CCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred hcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhhh
Confidence 6655678999999999994 3567788899999999999999999999999999999999987654
No 58
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.95 E-value=5.6e-27 Score=157.12 Aligned_cols=141 Identities=29% Similarity=0.478 Sum_probs=126.4
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|.+.+.||++..+ ...+.+++..+.+.+||+||++++...+..+++++|++++|||++++.+++.+..|+..+..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~ 106 (170)
T 1z0j_A 27 VEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQ 106 (170)
T ss_dssp HHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 34567788899999665 67788899889999999999999999999999999999999999999999999999999887
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
... +..|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|+++.+.+.
T Consensus 107 ~~~-~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 107 HGP-PSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp HSC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred hCC-CCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 643 67899999999999887888888999999999999999999999999999999988753
No 59
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.1e-27 Score=168.00 Aligned_cols=146 Identities=29% Similarity=0.477 Sum_probs=120.9
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ ...+.+++..+.+++||+||++++..++..+++++|++|+|||++++.+++.+..|+..+..
T Consensus 34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~ 113 (223)
T 3cpj_B 34 TKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRE 113 (223)
T ss_dssp HHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 35667778889998665 67788899989999999999999999999999999999999999999999999999999877
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcccc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQ 149 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 149 (159)
... .++|+++|+||+|+.+.+.++.+++..+++..+++++++||++|.|++++|+++.+.+.+....
T Consensus 114 ~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 180 (223)
T 3cpj_B 114 NAD-DNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSK 180 (223)
T ss_dssp HCC---CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTCC--
T ss_pred hCC-CCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 643 5789999999999987788888899999999999999999999999999999999998866543
No 60
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.95 E-value=3.1e-27 Score=158.36 Aligned_cols=142 Identities=33% Similarity=0.566 Sum_probs=119.6
Q ss_pred cccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 4 ESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
.+.|...+.||++..+ ...+.+++..+.+.+||+||++++...+..+++++|++++|||++++.+++.+..|+..+...
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 104 (170)
T 1g16_A 25 EDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEH 104 (170)
T ss_dssp HCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred hCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 4567778889998655 677788888899999999999999988999999999999999999999999999999998876
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.. .+.|+++|+||+|+ ..+.+..+++..+++.++++++++||++|.|++++|+++.+.+.++.
T Consensus 105 ~~-~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 167 (170)
T 1g16_A 105 AN-DEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167 (170)
T ss_dssp SC-TTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHTC
T ss_pred cC-CCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 53 57899999999999 44667788889999999999999999999999999999999887653
No 61
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.9e-27 Score=163.15 Aligned_cols=143 Identities=29% Similarity=0.448 Sum_probs=126.5
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ ...+.+++..+.+++||+||++++...+..+++++|++++|||++++++++.+..|+..+..
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~ 123 (192)
T 2fg5_A 44 VQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKE 123 (192)
T ss_dssp HHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 34567778899999665 66777788888999999999999999999999999999999999999999999999999887
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
... .++|+++|+||+|+.+.+.++.+++..+++.++++++++||++|.|++++|+++.+.+.+.
T Consensus 124 ~~~-~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 124 HGP-ENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPL 187 (192)
T ss_dssp HSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC--
T ss_pred hCC-CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence 652 5789999999999987778888999999999999999999999999999999999877543
No 62
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.95 E-value=8.6e-28 Score=166.78 Aligned_cols=141 Identities=28% Similarity=0.439 Sum_probs=125.3
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHH-HHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEI-YKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~-~~~~~~i~~ 81 (159)
+.+.|...+.||++..+...+.+++..+.+++|||+|+++|..++..+++++|++|+|||++++++++.+ ..|+..+..
T Consensus 49 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~ 128 (205)
T 1gwn_A 49 AKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE 128 (205)
T ss_dssp HHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred hcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 3567888899999988877788888899999999999999998899999999999999999999999998 689988877
Q ss_pred hcCCCCCcEEEEEeCCCCCC------------cCCCCHHHHHHHHHHcC-CcEEEeCCC-CCCCHHHHHHHHHHHHHh
Q psy11289 82 VKDRDEFPMLMVGNKADLDH------------QRQVSSMDAQNVARQLR-IPYIECSAK-VRINVDQAFHELVRIVLL 145 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~sa~-~~~~i~~~~~~l~~~~~~ 145 (159)
.. .+.|+++|+||+|+.+ .+.++.+++..+++.++ +++++|||+ +|.|++++|+.+++.++.
T Consensus 129 ~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 129 FC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp HC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred HC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 65 5789999999999964 25688889999999988 689999999 689999999999998875
No 63
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.95 E-value=5.3e-27 Score=162.04 Aligned_cols=141 Identities=29% Similarity=0.497 Sum_probs=125.0
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHH-HHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEI-YKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~-~~~~~~i~~ 81 (159)
+.+.|...+.||++..+...+.+++..+.+++||+||++++..++..+++++|++++|||+++++++..+ ..|+..+..
T Consensus 46 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 125 (201)
T 2gco_A 46 SKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 125 (201)
T ss_dssp HHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred HhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 3567788899999988777788899999999999999999998899999999999999999999999999 578888877
Q ss_pred hcCCCCCcEEEEEeCCCCCCc------------CCCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQ------------RQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
.. .+.|+++|+||+|+.+. +.++.+++..+++.+++ +++++||++|.|++++|+++.+.+.+
T Consensus 126 ~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 126 FC--PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp HS--TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred hC--CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 54 57899999999999764 56788889999999998 79999999999999999999988753
No 64
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.95 E-value=1.3e-27 Score=165.24 Aligned_cols=142 Identities=25% Similarity=0.315 Sum_probs=106.0
Q ss_pred ccccccccccc-ceEEEEEEECCe--eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 6 YFVTDYDPTIE-DSYTKQCVIDDI--PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 6 ~f~~~~~pt~~-~~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
.|.+.+.||++ +.+...+.+++. .+.+++||+||++++..++..+++++|++++|||++++.+++.+..|+..+...
T Consensus 46 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 125 (208)
T 2yc2_C 46 KFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSA 125 (208)
T ss_dssp ---------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 67888999998 445778888887 889999999999999999999999999999999999999999999999999887
Q ss_pred cC--CCCCcEEEEEeCCCCCC-cCCCCHHHHHHHHHHcCCcEEEeCCCC-CCCHHHHHHHHHHHHHhcc
Q psy11289 83 KD--RDEFPMLMVGNKADLDH-QRQVSSMDAQNVARQLRIPYIECSAKV-RINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 83 ~~--~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~-~~~i~~~~~~l~~~~~~~~ 147 (159)
.. ..++|+++|+||+|+.+ .+.++.+++..+++.++++++++||++ |.|++++|+++.+.+.+..
T Consensus 126 ~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 126 RPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNY 194 (208)
T ss_dssp CSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHHHH
T ss_pred hcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHHHH
Confidence 54 24789999999999987 778888999999999999999999999 9999999999999887654
No 65
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.95 E-value=2.4e-26 Score=155.12 Aligned_cols=142 Identities=37% Similarity=0.558 Sum_probs=121.6
Q ss_pred cccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 4 ESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
.+.|...+.||++..+ ...+.+++..+.+.+||+||++++...+..+++++|++++|||++++.+++.+..|+..+...
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~ 108 (177)
T 1wms_A 29 TNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYY 108 (177)
T ss_dssp HSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred cCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHH
Confidence 4567788899999665 788888999999999999999999999999999999999999999999999999999998776
Q ss_pred cCC---CCCcEEEEEeCCCCCCcCCCCHHHHHHHHH-HcCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 83 KDR---DEFPMLMVGNKADLDHQRQVSSMDAQNVAR-QLRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 83 ~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
... .+.|+++|+||+|+. .+.+..+++..+++ ..+++++++||++|.|++++|+++++.+.+.
T Consensus 109 ~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 109 ADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp HTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred ccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 532 578999999999997 46677888889988 5678999999999999999999999988753
No 66
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=5.8e-27 Score=157.18 Aligned_cols=142 Identities=35% Similarity=0.583 Sum_probs=125.5
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
.+.|...+.||++..+...+..++..+.+++||+||++++..++..+++++|++++|||++++.+++.+..|+..+.+..
T Consensus 25 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~ 104 (172)
T 2erx_A 25 KGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIK 104 (172)
T ss_dssp TCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHH
T ss_pred cCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHh
Confidence 45677788999998877778889998999999999999999999999999999999999999999999999988887764
Q ss_pred C-CCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 84 D-RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 84 ~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
. ..+.|+++|+||+|+.+.+.+...++..++...+++++++||++|.|++++|+++.+.+.+
T Consensus 105 ~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 105 GDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp C---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred CCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 2 2478999999999998878888888899999999999999999999999999999986643
No 67
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.95 E-value=5.7e-27 Score=158.30 Aligned_cols=140 Identities=31% Similarity=0.515 Sum_probs=126.0
Q ss_pred cccccccccccccce-EEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 4 ESYFVTDYDPTIEDS-YTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
.+.|...+.||++.. ....+.+++..+.+.+||+||++++...+..+++++|++++|||++++.++..+..|+..+...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 115 (179)
T 2y8e_A 36 YDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTE 115 (179)
T ss_dssp HSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred cCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 466778888999854 4788888999999999999999999999999999999999999999999999999999998876
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
.. .+.|+++|+||+|+.+.+.++.+++..+++..+++++++||++|.|++++|+++.+.+.
T Consensus 116 ~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 116 RG-SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp HT-TSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred cC-CCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 53 57899999999999887888888999999999999999999999999999999988653
No 68
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=7.2e-27 Score=162.08 Aligned_cols=143 Identities=29% Similarity=0.477 Sum_probs=120.0
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHH-HHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEI-YKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~-~~~~~~i~~ 81 (159)
+.+.|...+.||++..+...+.+++..+.+.+|||||++++..++..+++++|++++|||+++++++..+ ..|+..+..
T Consensus 46 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 125 (207)
T 2fv8_A 46 SKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKH 125 (207)
T ss_dssp HHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred hcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 3466778889999988877788899999999999999999998899999999999999999999999998 578888877
Q ss_pred hcCCCCCcEEEEEeCCCCCCc------------CCCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQ------------RQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.. +++|+++|+||+|+.+. +.++.+++..++...++ +++++||++|.|++++|+++.+.+.+.+
T Consensus 126 ~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 126 FC--PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp HS--TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSCC
T ss_pred hC--CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence 54 57899999999999654 56778889999999997 8999999999999999999999987654
No 69
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.95 E-value=1.6e-28 Score=166.60 Aligned_cols=141 Identities=30% Similarity=0.601 Sum_probs=107.5
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH-HHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY-KFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~~ 81 (159)
+.+.|...+.||+++.+...+.+++..+.+++||+||++++..++..+++++|++++|||++++++++.+. .|+..+..
T Consensus 29 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 108 (182)
T 3bwd_D 29 TSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKH 108 (182)
T ss_dssp HHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred hcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 35678889999999777666677888889999999999999999999999999999999999999999997 79888887
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCC----------CCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQ----------VSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
.. .+.|+++|+||+|+.+.+. ++.+++..+++.+++ +++++||++|.|++++|+++++.+.+
T Consensus 109 ~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 109 YA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp HC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred hC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 64 4789999999999865443 477888999999996 89999999999999999999988753
No 70
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.95 E-value=3.5e-26 Score=157.30 Aligned_cols=141 Identities=26% Similarity=0.430 Sum_probs=122.5
Q ss_pred ccccccccccccccceE-EEEEEECCee-------------------------------------EEEEEEeCCCcccch
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIP-------------------------------------ARLDILDTAGQEEFS 44 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~-------------------------------------~~~~l~D~~g~~~~~ 44 (159)
+.+.|.+.+.||++..+ ...+.+++.. +.+.+||+||++++.
T Consensus 28 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 107 (208)
T 3clv_A 28 TKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYA 107 (208)
T ss_dssp HHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CCCTTTCEEEEEEEECTTGGGCT
T ss_pred HhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccccCccceeEEEEEECCCcHHHH
Confidence 34567788999998665 6667777655 889999999999999
Q ss_pred HHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEe
Q psy11289 45 AMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIEC 124 (159)
Q Consensus 45 ~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (159)
..+..+++.+|++++|||++++.++..+..|+..+.... +.|+++|+||+| ...+.+..+++..+++..+++++++
T Consensus 108 ~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D-~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (208)
T 3clv_A 108 SIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQT 183 (208)
T ss_dssp TTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTT-CC-CCSCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCC-cccccCCHHHHHHHHHHcCCcEEEE
Confidence 999999999999999999999999999999999988764 389999999999 5556788889999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 125 SAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 125 sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
||++|.|++++|+++.+.+.++.
T Consensus 184 Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 184 SAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999887654
No 71
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.95 E-value=2.6e-26 Score=157.75 Aligned_cols=143 Identities=31% Similarity=0.509 Sum_probs=116.8
Q ss_pred ccccccccccccceEEEEEEECCeeEEEEEEeCCCccc-chHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 5 SYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEE-FSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 5 ~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
..|.+.++++..+.+.+.+.+++..+.+.+|||+|++. +..++..+++.+|++++|||+++++||+.+..|+..+....
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~ 110 (192)
T 2cjw_A 31 DSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR 110 (192)
T ss_dssp CCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT
T ss_pred CCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh
Confidence 34566666544465678888999999999999999876 45567788899999999999999999999999988887764
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
...++|+++|+||+|+.+.+.+..+++..++..+++++++|||++|.|++++|+++++.+....
T Consensus 111 ~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 111 QTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHhhc
Confidence 4457899999999999877788888888899999999999999999999999999999886443
No 72
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2.7e-26 Score=157.67 Aligned_cols=144 Identities=35% Similarity=0.591 Sum_probs=126.8
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
.+.|...+.||++..+...+..++..+.+.+|||||++++..++..+++++|++++|||++++.+++.+..|+..+....
T Consensus 30 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 109 (199)
T 2gf0_A 30 KGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIK 109 (199)
T ss_dssp HSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHH
T ss_pred cCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHh
Confidence 46677888999998877778889999999999999999999999999999999999999999999999998888777754
Q ss_pred C-CCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 84 D-RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 84 ~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
. ..+.|+++|+||+|+.+ +.+..+++..++..++++++++||++|.|++++|+++++.+.++..
T Consensus 110 ~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 174 (199)
T 2gf0_A 110 GSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNM 174 (199)
T ss_dssp SCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSSSCE
T ss_pred cCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhhhhc
Confidence 3 24789999999999975 5677888889999999999999999999999999999998876543
No 73
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=4e-26 Score=158.46 Aligned_cols=142 Identities=33% Similarity=0.564 Sum_probs=126.1
Q ss_pred cccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 4 ESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
.+.|...+.||++..+ ...+.+++..+.+.+||+||++++..++..+++++|++++|||++++.++..+..|+..+...
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~ 121 (213)
T 3cph_A 42 EDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEH 121 (213)
T ss_dssp HCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred hCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 4567778889998655 677888999899999999999999988999999999999999999999999999999998876
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.. .+.|+++|+||+|+ ..+.+..+++..+++.++++++++||++|.|++++|+++.+.+.+..
T Consensus 122 ~~-~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 184 (213)
T 3cph_A 122 AN-DEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184 (213)
T ss_dssp TT-TCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHHH
T ss_pred cC-CCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 53 47899999999999 44667788889999999999999999999999999999999887654
No 74
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.95 E-value=3.3e-27 Score=163.54 Aligned_cols=139 Identities=28% Similarity=0.526 Sum_probs=122.6
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH-HHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY-KFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~~ 81 (159)
+.+.|.+.+.||+++.+...+.+++..+.+++|||||++++..++..+++++|++++|||++++.+++.+. .|+..+..
T Consensus 51 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 130 (204)
T 4gzl_A 51 TTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 130 (204)
T ss_dssp HHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred HhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 45778889999999888888889999999999999999999999999999999999999999999999997 89888887
Q ss_pred hcCCCCCcEEEEEeCCCCCCcC------------CCCHHHHHHHHHHcCCc-EEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQR------------QVSSMDAQNVARQLRIP-YIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
.. .++|+++|+||+|+.+.. .++.+++..+++.+++. ++++||++|.|++++|+++++.+
T Consensus 131 ~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 131 HC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred hC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 65 678999999999986543 37788899999999964 99999999999999999998754
No 75
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.95 E-value=2.3e-27 Score=162.63 Aligned_cols=134 Identities=19% Similarity=0.253 Sum_probs=114.1
Q ss_pred ccccccceE-EEEE-EECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECC------ChhhHHHHHHHHHHHHhh
Q psy11289 11 YDPTIEDSY-TKQC-VIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVT------DRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 11 ~~pt~~~~~-~~~~-~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~------~~~s~~~~~~~~~~i~~~ 82 (159)
+.||++..+ ...+ .+++..+.+++|||||++++..++..+++++|++|+|||++ +.++++.+..|+..+..
T Consensus 53 ~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~- 131 (198)
T 3t1o_A 53 DERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL- 131 (198)
T ss_dssp SCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-
T ss_pred cccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-
Confidence 445776554 4444 56788899999999999999999999999999999999999 56788888888887743
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
...++|+++|+||+|+.+ .++.+++.++++..++ +++++||++|.|++++|+++++.+.++..
T Consensus 132 -~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 132 -TLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp -CTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred -ccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 236789999999999865 3778899999999999 99999999999999999999999987654
No 76
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.94 E-value=2.1e-26 Score=155.86 Aligned_cols=145 Identities=34% Similarity=0.564 Sum_probs=111.6
Q ss_pred ccccccccccccccce-EEEEEEEC-CeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 3 IESYFVTDYDPTIEDS-YTKQCVID-DIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~-~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
+.+.|...+.||++.. ....+.++ +..+.+++||+||++++...+..+++++|++++|||++++.+++.+..|+..+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 108 (182)
T 1ky3_A 29 VNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFL 108 (182)
T ss_dssp HHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred HhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHH
Confidence 3456778889999844 46777776 667889999999999999999999999999999999999999999999999888
Q ss_pred hhcC---CCCCcEEEEEeCCCCC-CcCCCCHHHHHHHHH-HcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 81 RVKD---RDEFPMLMVGNKADLD-HQRQVSSMDAQNVAR-QLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 81 ~~~~---~~~~p~ivv~nK~D~~-~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.... ..+.|+++|+||+|+. ..+.+..+++..+++ ..+++++++||++|.|++++|+++.+.+.+++
T Consensus 109 ~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 109 VHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp HHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 7653 2578999999999995 345677888888988 45689999999999999999999999987654
No 77
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.94 E-value=4.1e-26 Score=159.21 Aligned_cols=148 Identities=23% Similarity=0.372 Sum_probs=124.1
Q ss_pred ccccccccccccccceE-EEEEEE-CCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVI-DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
+.+.|...+.||++..+ ...... ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+..|+..+.
T Consensus 32 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 111 (218)
T 4djt_A 32 LDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQ 111 (218)
T ss_dssp TTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred hcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 35667788899998665 444444 3455889999999999999899999999999999999999999999999999988
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccccCC
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQCK 151 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~ 151 (159)
.... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++.+.+.+......
T Consensus 112 ~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~ 181 (218)
T 4djt_A 112 AVVG-NEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIF 181 (218)
T ss_dssp HHHC-SSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCTTCCB
T ss_pred HhcC-CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhccccccc
Confidence 8764 468999999999998877888888889999999999999999999999999999999987664443
No 78
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.94 E-value=7e-26 Score=156.59 Aligned_cols=144 Identities=36% Similarity=0.602 Sum_probs=124.5
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ ...+.+++..+.+.+||+||++++..++..+++++|++|+|||++++.++..+..|+..+..
T Consensus 29 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 108 (207)
T 1vg8_A 29 VNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLI 108 (207)
T ss_dssp HHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred HcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 34567788899998554 77788888888999999999999988888999999999999999999999999999998877
Q ss_pred hcCC---CCCcEEEEEeCCCCCCcCCCCHHHHHHHHH-HcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 82 VKDR---DEFPMLMVGNKADLDHQRQVSSMDAQNVAR-QLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 82 ~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.... .+.|+++|+||+|+. .+.+..+++..++. ..+++++++||++|.|++++|+++.+.+.+..
T Consensus 109 ~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 109 QASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177 (207)
T ss_dssp HHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred hcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 6532 468999999999997 45667788888887 66789999999999999999999999887654
No 79
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.94 E-value=4.7e-26 Score=159.33 Aligned_cols=141 Identities=25% Similarity=0.469 Sum_probs=124.1
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||.+..+ .....+++..+.+++|||+|++++..++..+++++|++++|||++++.++..+..|+..+..
T Consensus 36 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~ 115 (221)
T 3gj0_A 36 LTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR 115 (221)
T ss_dssp HHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred HcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 46678888999998554 77788899999999999999999999999999999999999999999999999999999988
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.. .++|+++|+||+|+.+.... .+...+++..+++++++||++|.|++++|+++.+.+....
T Consensus 116 ~~--~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 116 VC--ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp HS--TTCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred hC--CCCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 75 57899999999999764432 2566788888999999999999999999999999987654
No 80
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.94 E-value=1.4e-25 Score=165.26 Aligned_cols=142 Identities=27% Similarity=0.505 Sum_probs=127.0
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH-HHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY-KFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~~ 81 (159)
+.+.|...+.||+++.+...+.+++..+.+++||+||++++...+..+++++|++++|||++++.++..+. .|+..+..
T Consensus 176 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 255 (332)
T 2wkq_A 176 TTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRH 255 (332)
T ss_dssp HHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred HhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 35678889999999888888899999999999999999999999999999999999999999999999987 78888877
Q ss_pred hcCCCCCcEEEEEeCCCCCCc------------CCCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQ------------RQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
.. .++|+++|+||+|+.+. +.++.+++..+++..++ ++++|||++|.|++++|+++.+.+...
T Consensus 256 ~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 256 HC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp HC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred hC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhcC
Confidence 65 47899999999998653 57888899999999997 899999999999999999999988653
No 81
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.93 E-value=8.1e-28 Score=165.85 Aligned_cols=143 Identities=31% Similarity=0.538 Sum_probs=116.4
Q ss_pred ccccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|...+.||++..+ ...+.+++..+.+.+||++|++++..++..+++++|++++|||++++.+++.+..|+..+..
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 133 (199)
T 3l0i_B 54 ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR 133 (199)
T ss_dssp BCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHS
T ss_pred hcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 35667777888888555 78888899999999999999999988889999999999999999999999999999999877
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
... .++|+++|+||+|+.+.+.++.+++..++..++++++++||++|.|++++|+++.+.+.++
T Consensus 134 ~~~-~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 134 YAS-ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp CC--CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTTTT
T ss_pred hcc-CCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 643 4789999999999987777777788899999999999999999999999999998877543
No 82
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.93 E-value=3.9e-26 Score=156.92 Aligned_cols=142 Identities=13% Similarity=0.183 Sum_probs=108.1
Q ss_pred ccccccc-cccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 3 IESYFVT-DYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~-~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.|.. ++.||++..+ ..+ ++..+.+++|||+|++++..++..+++++|++|+|||++++++|..+..|+..+..
T Consensus 38 ~~~~~~~~~~~~t~~~~~-~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~ 114 (199)
T 4bas_A 38 KPAQSSSKHITATVGYNV-ETF--EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLK 114 (199)
T ss_dssp SCCC----CCCCCSSEEE-EEE--EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHT
T ss_pred hcCCCcccccccccceeE-EEE--EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHh
Confidence 4566777 7899998443 223 34456677799999999999999999999999999999999999999999988876
Q ss_pred hcCC-------CCCcEEEEEeCCCCCCcCCCCHHHHH-HH-----HHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 82 VKDR-------DEFPMLMVGNKADLDHQRQVSSMDAQ-NV-----ARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 82 ~~~~-------~~~p~ivv~nK~D~~~~~~~~~~~~~-~~-----~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
.... .++|+++|+||+|+.+... .++.. .+ ++..++++++|||++|.|++++|+++.+.+.+...
T Consensus 115 ~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 115 HEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp SHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred ChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence 5321 2789999999999976432 22221 11 13456789999999999999999999999987754
Q ss_pred c
Q psy11289 149 Q 149 (159)
Q Consensus 149 ~ 149 (159)
+
T Consensus 193 ~ 193 (199)
T 4bas_A 193 K 193 (199)
T ss_dssp -
T ss_pred c
Confidence 4
No 83
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.87 E-value=1.9e-27 Score=164.48 Aligned_cols=139 Identities=29% Similarity=0.539 Sum_probs=121.4
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH-HHHHHHHh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY-KFHRQILR 81 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~~ 81 (159)
+.+.|.+.+.||+++.+...+.+++..+.+++||+||++++...+..+++++|++++|||++++.++..+. .|+..+..
T Consensus 51 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~ 130 (204)
T 3th5_A 51 TTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 130 (204)
Confidence 45678888999999888777888898999999999999999999999999999999999999999999987 78887766
Q ss_pred hcCCCCCcEEEEEeCCCCCCcC------------CCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQR------------QVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
.. .++|+++|+||+|+.+.. .++.+++..+++.+++ +++++||++|.|++++|+++++.+
T Consensus 131 ~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 131 HC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 54 478999999999996543 5666777888888887 899999999999999999998765
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.92 E-value=3.7e-25 Score=152.58 Aligned_cols=132 Identities=15% Similarity=0.266 Sum_probs=101.7
Q ss_pred ccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcC
Q psy11289 5 SYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD 84 (159)
Q Consensus 5 ~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~ 84 (159)
+.| ..+.||++.. ...+.+++ +.+++|||||++++..++..+++++|++++|||+++++++..+..|+..+.+...
T Consensus 48 ~~~-~~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~ 123 (198)
T 1f6b_A 48 DRL-GQHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDET 123 (198)
T ss_dssp C-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG
T ss_pred CCC-CccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc
Confidence 344 3577888865 35566777 5677799999999999999999999999999999999999999999998877544
Q ss_pred CCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHH-----------------cCCcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 85 RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQ-----------------LRIPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 85 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
..++|+++|+||+|+.+ .++.++..+++.. .++++++|||++|.|++++|+++.+.
T Consensus 124 ~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 124 IANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp GTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999875 5667777776652 23579999999999999999999764
No 85
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.92 E-value=2.3e-25 Score=148.62 Aligned_cols=136 Identities=16% Similarity=0.206 Sum_probs=103.2
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
.+.|. .+.||++.. ...+..+ .+.+++||+||++++..++..+++++|++++|||+++++++..+..|+..+....
T Consensus 22 ~~~~~-~~~~t~~~~-~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 97 (164)
T 1r8s_A 22 LGEIV-TTIPTIGFN-VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED 97 (164)
T ss_dssp HHCSS-CCCCCSSCC-EEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG
T ss_pred cCCcC-cccCcCcee-EEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhch
Confidence 34554 367888833 3334433 4567779999999999999999999999999999999999999999998887754
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHHHHH-----HHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNV-----ARQLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
...+.|+++|+||+|+.+.. ..++.... +...+++++++||++|.|++++|+++.+.+.+
T Consensus 98 ~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 98 ELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp GGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred hhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence 44678999999999996532 22222221 11234579999999999999999999987754
No 86
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.92 E-value=1.4e-24 Score=148.69 Aligned_cols=132 Identities=17% Similarity=0.340 Sum_probs=107.8
Q ss_pred ccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcC
Q psy11289 5 SYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD 84 (159)
Q Consensus 5 ~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~ 84 (159)
+.| ..+.||++.. ...+.+++ +.+++|||||++++..++..+++++|++++|||++++++++.+..|+..+.+...
T Consensus 46 ~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 121 (190)
T 1m2o_B 46 DRL-ATLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAE 121 (190)
T ss_dssp SCC-CCCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG
T ss_pred CCC-CccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchh
Confidence 344 3577888864 45667777 5677799999999998899999999999999999999999999999998877544
Q ss_pred CCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHH------------cCCcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 85 RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQ------------LRIPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 85 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
..+.|+++|+||+|+.+ .++.++..+.+.. .++++++|||++|.|++++|+++.+.
T Consensus 122 ~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 122 LKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp GTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred hcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 46789999999999875 5566666655432 34679999999999999999999754
No 87
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.92 E-value=2e-25 Score=165.94 Aligned_cols=143 Identities=16% Similarity=0.190 Sum_probs=115.4
Q ss_pred cccccccccccccceE----------EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCC--------
Q psy11289 4 ESYFVTDYDPTIEDSY----------TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD-------- 65 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~----------~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~-------- 65 (159)
++.|.++|.||..+.+ ...+.++ .+.+++|||+|+++++++|..|+++++++|||||+++
T Consensus 159 ~ri~~~~Y~PT~~Dil~~~~~T~Gi~~~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed 236 (353)
T 1cip_A 159 DRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAED 236 (353)
T ss_dssp HHHTSTTCCCCHHHHHTCCCCCCSEEEEEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTE
T ss_pred HHHhcCCCCCCccccccccCceeceEEEEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECcccccccccc
Confidence 4567788888765421 2334444 4667889999999999999999999999999999999
Q ss_pred --hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcC---------------CCCHHHHHHHHH-----------Hc
Q psy11289 66 --RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQR---------------QVSSMDAQNVAR-----------QL 117 (159)
Q Consensus 66 --~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~---------------~~~~~~~~~~~~-----------~~ 117 (159)
.+++.+...|+..+.......++|+++++||+|+.+++ .++.+++..++. ..
T Consensus 237 ~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~ 316 (353)
T 1cip_A 237 EEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTK 316 (353)
T ss_dssp EEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTC
T ss_pred chhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCC
Confidence 56799999999998875444679999999999985322 467888888887 34
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 118 RIPYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 118 ~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
++.+++|||++|.||.++|+++...+.+...
T Consensus 317 ~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l 347 (353)
T 1cip_A 317 EIYTHFTCATDTKNVQFVFDAVTDVIIKNNL 347 (353)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred ceEEEEEECcCchhHHHHHHHHHHHHHHHHH
Confidence 5779999999999999999999999876553
No 88
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=3.5e-24 Score=146.10 Aligned_cols=139 Identities=19% Similarity=0.263 Sum_probs=104.8
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
.+.|. .+.||++.. ...+.+++ +.+++||++|++++..++..+++++|++++|||++++++++.+..|+..+....
T Consensus 38 ~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~ 113 (187)
T 1zj6_A 38 MNEVV-HTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE 113 (187)
T ss_dssp TTSCE-EEECCSCSS-CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSG
T ss_pred cCCCC-cCcCCCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhch
Confidence 35555 678888843 34455665 556779999999999999999999999999999999999999999999888764
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHH-----HcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNVAR-----QLRIPYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
...+.|+++|+||+|+.+. ...++...... ..+++++++||++|.|++++|+++++.+.....
T Consensus 114 ~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 114 DLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLE 181 (187)
T ss_dssp GGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC---
T ss_pred hhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHHhh
Confidence 3367899999999999652 33444444332 235689999999999999999999998755443
No 89
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.92 E-value=2.2e-25 Score=152.36 Aligned_cols=138 Identities=21% Similarity=0.275 Sum_probs=107.1
Q ss_pred ccccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+.+.|...+.||++..+.. +..+ .+.+++||+||++++..++..+++++|++++|||+++++++..+..|+..+...
T Consensus 43 ~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~ 119 (188)
T 1zd9_A 43 ASGQFNEDMIPTVGFNMRK-ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK 119 (188)
T ss_dssp HHSCCCCSCCCCCSEEEEE-EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC
T ss_pred HcCCCCCccCCCCceeEEE-EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhC
Confidence 3566777889999876542 3333 456777999999999999999999999999999999999999999999888765
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHH-----HHcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVA-----RQLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
....++|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++++|+++.+.+.+
T Consensus 120 ~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 120 PQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp GGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred cccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 433678999999999986532 222222211 1234579999999999999999999987644
No 90
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.92 E-value=4e-23 Score=142.33 Aligned_cols=143 Identities=27% Similarity=0.476 Sum_probs=123.4
Q ss_pred cccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 4 ESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
...|...+.||++..+ ...+.++|..+.+++||++|++++...+..++++++++++|||++++.++..+..|+..+...
T Consensus 27 ~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~ 106 (199)
T 2f9l_A 27 RNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH 106 (199)
T ss_dssp HSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred cCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 4456777889998655 778889999999999999999999888889999999999999999999999998998887665
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.. .+.|+++++||+|+.+.+.++.+++..++...++.++++||+++.|++++|+++.+.+.+..
T Consensus 107 ~~-~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~~ 170 (199)
T 2f9l_A 107 AD-SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIV 170 (199)
T ss_dssp SC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cC-CCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 32 46899999999999877788888899999999999999999999999999999999887654
No 91
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.91 E-value=9.2e-25 Score=149.89 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=98.8
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
.+.|. .+.||++.. ...+..++ +.+++||+||++++..++..+++++|++++|||+++++++..+..|+..+....
T Consensus 51 ~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~ 126 (192)
T 2b6h_A 51 LGEIV-TTIPTIGFN-VETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQED 126 (192)
T ss_dssp SSCCE-EEEEETTEE-EEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG
T ss_pred hCCcc-ccCCcCcee-EEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhccc
Confidence 44554 457788732 34445554 567779999999999999999999999999999999999999999998887754
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHHHHH-----HHHcCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNV-----ARQLRIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
...+.|+++|+||+|+.+.. ..++.... +...++++++|||++|.|++++|+++++.+.
T Consensus 127 ~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 127 ELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp GGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred ccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 44578999999999996532 22222111 1122456999999999999999999998764
No 92
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.91 E-value=2.3e-24 Score=146.54 Aligned_cols=133 Identities=20% Similarity=0.268 Sum_probs=103.3
Q ss_pred cccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC
Q psy11289 8 VTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDE 87 (159)
Q Consensus 8 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 87 (159)
...+.||+|.. ...+.+++ +.+++||+||++++...+..+++++|++++|||+++++++..+..|+..+.......+
T Consensus 41 ~~~~~~t~g~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 117 (181)
T 1fzq_A 41 ISHITPTQGFN-IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSC 117 (181)
T ss_dssp CEEEEEETTEE-EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTT
T ss_pred CCcccCcCCeE-EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcC
Confidence 35678888843 44556664 5567799999999999999999999999999999999999999999888766543467
Q ss_pred CcEEEEEeCCCCCCcCCCCHHHHHHHH-----HHcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 88 FPMLMVGNKADLDHQRQVSSMDAQNVA-----RQLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 88 ~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
.|+++|+||+|+.+... .++..+.. ...++++++|||++|.|++++|+++.+.+.+
T Consensus 118 ~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 118 VPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp CCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred CCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 89999999999975432 23322221 1224679999999999999999999987754
No 93
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.91 E-value=2.6e-24 Score=144.26 Aligned_cols=136 Identities=16% Similarity=0.208 Sum_probs=105.7
Q ss_pred ccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcC
Q psy11289 5 SYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD 84 (159)
Q Consensus 5 ~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~ 84 (159)
+.|. .+.||++.. ...+.+++ +.+++||+||++++...+..+++++|++++|||+++++++..+..|+..+.....
T Consensus 30 ~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~ 105 (171)
T 1upt_A 30 GEVV-TTIPTIGFN-VETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE 105 (171)
T ss_dssp SSCC-CCCCCSSEE-EEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGG
T ss_pred CCCC-CcCCcCccc-eEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh
Confidence 4443 467887743 44556664 4567799999999999999999999999999999999999999999888876543
Q ss_pred CCCCcEEEEEeCCCCCCcCCCCHHHHHH-----HHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 85 RDEFPMLMVGNKADLDHQRQVSSMDAQN-----VARQLRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 85 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
..+.|+++|+||+|+.+... .++... .+...+++++++||++|.|++++|+++.+.+.++
T Consensus 106 ~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 106 LRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp GTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred hCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhhc
Confidence 46789999999999975432 222221 1223456799999999999999999999988654
No 94
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.91 E-value=5.3e-25 Score=150.06 Aligned_cols=142 Identities=16% Similarity=0.207 Sum_probs=102.3
Q ss_pred ccccccccccccceE-EEEEEE---CCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCCh-hhHHHHHHHHHHH
Q psy11289 5 SYFVTDYDPTIEDSY-TKQCVI---DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR-NSFEEIYKFHRQI 79 (159)
Q Consensus 5 ~~f~~~~~pt~~~~~-~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~-~s~~~~~~~~~~i 79 (159)
+.|.+.+.||++..+ ...+.+ ++..+.+++||++|+++|..+++.++++++++++|||++++ .+++.+..|+..+
T Consensus 27 ~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~ 106 (184)
T 2zej_A 27 KSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNI 106 (184)
T ss_dssp ----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHH
T ss_pred CccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHH
Confidence 357778899998655 444443 34677889999999999998999999999999999999997 5899999999988
Q ss_pred HhhcCCCCCcEEEEEeCCCCCCcCCCC---HHHHHHHHHHcCCc----EEEeCCCCCC-CHHHHHHHHHHHHHhccc
Q psy11289 80 LRVKDRDEFPMLMVGNKADLDHQRQVS---SMDAQNVARQLRIP----YIECSAKVRI-NVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 80 ~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~sa~~~~-~i~~~~~~l~~~~~~~~~ 148 (159)
.... .+.|+++||||+|+.+.+.++ .+.+..+++.++++ ++++||++|. +++++++.+.+.+.+.+.
T Consensus 107 ~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~~ 181 (184)
T 2zej_A 107 KARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFKI 181 (184)
T ss_dssp HHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC--
T ss_pred HhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhcccc
Confidence 7754 578999999999987644332 23345666667887 9999999997 999999999988866543
No 95
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.91 E-value=5.7e-26 Score=168.89 Aligned_cols=146 Identities=14% Similarity=0.119 Sum_probs=113.5
Q ss_pred ccccccccccccccceEE----------EEEEECC----eeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECC----
Q psy11289 3 IESYFVTDYDPTIEDSYT----------KQCVIDD----IPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVT---- 64 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~----------~~~~~~~----~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~---- 64 (159)
+++.|.++|.||+++.+. ..+.+++ +.+++++|||+|+++++++|..|+++++++|+|||++
T Consensus 142 ~~ri~~~~Y~PT~~D~~~~r~~T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq 221 (354)
T 2xtz_A 142 LKRLSDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQ 221 (354)
T ss_dssp HHHHHSTTCCCCHHHHHHCCCCCCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTC
T ss_pred HHHHhcCCCCCCchheeeecccccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECccccc
Confidence 456688999999986542 1223455 6789999999999999999999999999999999998
Q ss_pred ------ChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCC--C-------------------CHHHHHHHHHH-
Q psy11289 65 ------DRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQ--V-------------------SSMDAQNVARQ- 116 (159)
Q Consensus 65 ------~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~--~-------------------~~~~~~~~~~~- 116 (159)
+.+++++...|+..+.......++|+++++||+|+.+++. + +.+++..++..
T Consensus 222 ~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~ 301 (354)
T 2xtz_A 222 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKK 301 (354)
T ss_dssp BCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHH
Confidence 7889999999999988754446799999999999854321 1 24566666443
Q ss_pred ---------------cCCcEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 117 ---------------LRIPYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 117 ---------------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
..+.+++|||+++.||.++|+++.+.+.+...
T Consensus 302 f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~~~l 348 (354)
T 2xtz_A 302 FEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNL 348 (354)
T ss_dssp HHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHHHHH
Confidence 12346899999999999999999998876543
No 96
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.91 E-value=2.5e-23 Score=142.21 Aligned_cols=134 Identities=18% Similarity=0.238 Sum_probs=108.4
Q ss_pred ccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCC-
Q psy11289 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDR- 85 (159)
Q Consensus 7 f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~- 85 (159)
|...+.||++. ....+.+++ +.+.+||++|++++...+..+++++|++++|||+++++++..+..|+..+......
T Consensus 47 ~~~~~~~t~~~-~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 123 (190)
T 2h57_A 47 QSQNILPTIGF-SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIK 123 (190)
T ss_dssp CCSSCCCCSSE-EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTT
T ss_pred CCCCcCCccce-eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhc
Confidence 56778888873 355566665 45677999999999999999999999999999999999999999999988876543
Q ss_pred -CCCcEEEEEeCCCCCCcCCCCHHHHHHHHH-----HcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 86 -DEFPMLMVGNKADLDHQRQVSSMDAQNVAR-----QLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 86 -~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
.++|+++|+||+|+.+ ..+.++..+++. ..+++++++||++|.|++++|+++.+.+.+
T Consensus 124 ~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 124 HRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred cCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 5789999999999964 334555555553 235789999999999999999999987643
No 97
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.91 E-value=3.6e-23 Score=140.79 Aligned_cols=134 Identities=20% Similarity=0.249 Sum_probs=106.9
Q ss_pred cccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC
Q psy11289 8 VTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDE 87 (159)
Q Consensus 8 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 87 (159)
...+.||++.. ...+.+++ +.+++|||||++++...+..+++++|++++|||++++++++.+..|+..+.......+
T Consensus 43 ~~~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 119 (186)
T 1ksh_A 43 VDTISPTLGFN-IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAG 119 (186)
T ss_dssp CSSCCCCSSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT
T ss_pred CCcccccCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCC
Confidence 56788888844 44555565 4567799999999998999999999999999999999999999999988877544467
Q ss_pred CcEEEEEeCCCCCCcCCCCHHHHHHHHH-----HcCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 88 FPMLMVGNKADLDHQRQVSSMDAQNVAR-----QLRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 88 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
.|+++|+||+|+.+.. ..++..+... ..+++++++||++|.|++++|+++.+.+.++
T Consensus 120 ~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 120 ATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp CEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred CcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 8999999999997543 2333332221 2356799999999999999999999988765
No 98
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.90 E-value=2e-24 Score=147.47 Aligned_cols=138 Identities=15% Similarity=0.160 Sum_probs=106.3
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
.+.|. .+.||++.. ...+..++ +.+++|||||++++...+..+++++|++++|||+++++++..+..|+..+....
T Consensus 44 ~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~ 119 (189)
T 2x77_A 44 LGDVV-TTVPTVGVN-LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDED 119 (189)
T ss_dssp CSCCE-EECSSTTCC-EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCS
T ss_pred cCCCC-CcCCCCceE-EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhh
Confidence 34454 367888743 34455564 456779999999998888899999999999999999999999999988887765
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHHHHH-----HHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNV-----ARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
...+.|+++|+||+|+.+... .++.... +...+++++++||++|.|++++|+++.+.+.+.+
T Consensus 120 ~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 120 ELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQG 186 (189)
T ss_dssp TTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHTC
T ss_pred hcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhcc
Confidence 446889999999999965432 2222221 1223467999999999999999999999887654
No 99
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.90 E-value=1.2e-23 Score=142.76 Aligned_cols=133 Identities=19% Similarity=0.256 Sum_probs=104.5
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
.+.| ..+.||++..+ ..+.+++ +.+++||++|++++..++..+++++|++++|||+++++++..+..|+..+....
T Consensus 43 ~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~ 118 (181)
T 2h17_A 43 MNEV-VHTSPTIGSNV-EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE 118 (181)
T ss_dssp TTSC-EEEECCSSSSC-EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCG
T ss_pred cCCC-CccCCcCceee-EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCh
Confidence 3445 66788888543 4455666 556779999999999999999999999999999999999999999998887754
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHHHHHH-----HHcCCcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNVA-----RQLRIPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
...++|+++|+||+|+.+. ...++..+.. ...+++++++||++|.|++++|+++++.
T Consensus 119 ~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 119 DLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp GGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred hhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 3367899999999998653 3344443332 1234679999999999999999999764
No 100
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.90 E-value=9.1e-24 Score=145.23 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=97.0
Q ss_pred CCeeEEEEEEeCCCcccchHHH---HHHhhcCCEEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 26 DDIPARLDILDTAGQEEFSAMR---EQYMRSGEGFLLVFSVTDR--NSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 26 ~~~~~~~~l~D~~g~~~~~~~~---~~~~~~~~~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
++..+.+++||++|+++|.... ..+++++|++|+|||++++ +++..+..|+..+.... .++|+++|+||+|+.
T Consensus 65 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~piilv~nK~Dl~ 142 (196)
T 3llu_A 65 NSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN--PDMNFEVFIHKVDGL 142 (196)
T ss_dssp CTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC--TTCEEEEEEECGGGS
T ss_pred CCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC--CCCcEEEEEeccccC
Confidence 3677889999999999987766 8999999999999999997 77888888888775543 678999999999975
Q ss_pred C-------cCCCCHHHHHHHHH----HcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 101 H-------QRQVSSMDAQNVAR----QLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 101 ~-------~~~~~~~~~~~~~~----~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
+ .+.+...++..+++ .+++++++|||++ .|++++|+.+++.+
T Consensus 143 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 143 SDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred chhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 4 34555666777888 6788999999999 99999999999865
No 101
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.90 E-value=2.8e-24 Score=161.66 Aligned_cols=142 Identities=16% Similarity=0.179 Sum_probs=112.2
Q ss_pred cccccccccccccceE----------EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCC--------
Q psy11289 4 ESYFVTDYDPTIEDSY----------TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD-------- 65 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~----------~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~-------- 65 (159)
++.+.++|.||+++.+ ...+.+++ +++++|||+|+++++++|..|+++++++|+|||+++
T Consensus 183 ~ri~~~~Y~PT~~Dil~~r~~TiGi~~~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed 260 (402)
T 1azs_C 183 DVIKQDDYVPSDQDLLRCRVLTSGIFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIRED 260 (402)
T ss_dssp HHHTCTTCCCCHHHHHHCCCCCCSEEEEEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTT
T ss_pred HHhhccccCCccccccccccceeeeEEEEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccc
Confidence 4556788999887543 12344554 678889999999999999999999999999999999
Q ss_pred --hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCC---C---------------------------CHHHHHHH
Q psy11289 66 --RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQ---V---------------------------SSMDAQNV 113 (159)
Q Consensus 66 --~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~---~---------------------------~~~~~~~~ 113 (159)
.++|+++..|+..+.......++|+++++||+|+.+.+. + +.+++..+
T Consensus 261 ~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~f 340 (402)
T 1azs_C 261 NQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 340 (402)
T ss_dssp SCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHH
Confidence 899999999999988765456899999999999854321 1 13556555
Q ss_pred H-----HH--------cCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 114 A-----RQ--------LRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 114 ~-----~~--------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
+ +. .++.++++||+++.||.++|+++...+.+..
T Consensus 341 i~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~~~ 387 (402)
T 1azs_C 341 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH 387 (402)
T ss_dssp HHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHHHH
Confidence 3 22 2456789999999999999999998887654
No 102
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.90 E-value=5.2e-24 Score=155.66 Aligned_cols=129 Identities=18% Similarity=0.156 Sum_probs=107.2
Q ss_pred ccccccc-ccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChh-hHHHHHHHHHHH
Q psy11289 2 KIESYFV-TDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRN-SFEEIYKFHRQI 79 (159)
Q Consensus 2 ~~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i 79 (159)
|+.+.|. ++|.||+|+.+...+..++ ++++||+ +++|.++++.+++++|++|+|||+++++ ++..+.+|+..+
T Consensus 37 ~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~ 111 (301)
T 1u0l_A 37 KLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLA 111 (301)
T ss_dssp EECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHH
T ss_pred EEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHH
Confidence 4678898 8999999988764433333 5677999 8999999999999999999999999997 788899999877
Q ss_pred HhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcC--CcEEEeCCCCCCCHHHHHHHHHH
Q psy11289 80 LRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLR--IPYIECSAKVRINVDQAFHELVR 141 (159)
Q Consensus 80 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~~l~~ 141 (159)
.. .++|+++|+||+|+.+.+.+ ++...+++.++ +++++|||++|.|++++|..+..
T Consensus 112 ~~----~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 112 EK----NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HH----TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HH----CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 54 47899999999999754332 45677777777 89999999999999999987753
No 103
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.90 E-value=2.9e-22 Score=137.32 Aligned_cols=139 Identities=28% Similarity=0.488 Sum_probs=122.9
Q ss_pred cccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 4 ESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
...|...+.||++..+ ...+.++|..+.+++||++|++++...+..++++++++++|||.++..+++.+..|+..+...
T Consensus 51 ~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~ 130 (191)
T 1oix_A 51 RNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH 130 (191)
T ss_dssp HSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred cCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 4556778889999665 788899999999999999999999888899999999999999999999999988898877664
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
.. .+.|+++++||+|+.+.+.+..+++..++...++.++++||+++.|++++|+.+.+.+
T Consensus 131 ~~-~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 131 AD-SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp SC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cC-CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 32 4689999999999987777888899999999999999999999999999999998865
No 104
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.89 E-value=2.6e-24 Score=157.62 Aligned_cols=131 Identities=14% Similarity=0.202 Sum_probs=101.4
Q ss_pred cccccccceEEEEEEECCeeEEEEEEeCCCcccchH---HHHHHhhcCCEEEEEEECCCh--hhHHHHHHHHHHHHhhcC
Q psy11289 10 DYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSA---MREQYMRSGEGFLLVFSVTDR--NSFEEIYKFHRQILRVKD 84 (159)
Q Consensus 10 ~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~~~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~ 84 (159)
.+.||+|..+.. + +..+++++|||+|+++|.. .++.|+++++++|+|||++++ +++..+..|+..+....
T Consensus 30 ~~~~Tig~~~~~---v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~- 104 (331)
T 3r7w_B 30 YLESTSNPSLEH---F-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN- 104 (331)
T ss_dssp TCCCCCSCCCEE---E-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHC-
T ss_pred eecCeeeeeeEE---E-ccEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcC-
Confidence 367899866642 2 3458899999999999964 478999999999999999998 34444444555554443
Q ss_pred CCCCcEEEEEeCCCCCCc-------CCCCHHHHHHHHHH----cCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 85 RDEFPMLMVGNKADLDHQ-------RQVSSMDAQNVARQ----LRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 85 ~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
+++|++++|||+|+..+ +.++.+++.++|+. ++++++++||++ .||.++|..+++.+.+..
T Consensus 105 -~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~~~ 176 (331)
T 3r7w_B 105 -PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIPEL 176 (331)
T ss_dssp -TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSSTTH
T ss_pred -CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHhhH
Confidence 67999999999999753 35667777788875 678999999998 589999999997766443
No 105
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.89 E-value=6.4e-23 Score=139.04 Aligned_cols=138 Identities=15% Similarity=0.205 Sum_probs=104.5
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
.+.| ..+.||++.. ...+.+++ +.+++||+||++++...+..+++++|++++|||++++++++.+..|+..+....
T Consensus 40 ~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~ 115 (183)
T 1moz_A 40 IGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEE 115 (183)
T ss_dssp CSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSS
T ss_pred cCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcCh
Confidence 3445 5678888844 34556665 556779999999998889999999999999999999999999999998887765
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHH-----cCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQ-----LRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
...+.|+++|+||+|+.+. ...++....... .+++++++||++|.|++++|+++.+.+.+++
T Consensus 116 ~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~q 182 (183)
T 1moz_A 116 ELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ 182 (183)
T ss_dssp TTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred hhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhcc
Confidence 4468899999999998653 233443333221 2357999999999999999999999887653
No 106
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.89 E-value=2.4e-23 Score=152.97 Aligned_cols=134 Identities=16% Similarity=0.130 Sum_probs=107.0
Q ss_pred cccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECC----------ChhhHHHHHHHHHHHHh
Q psy11289 12 DPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVT----------DRNSFEEIYKFHRQILR 81 (159)
Q Consensus 12 ~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~s~~~~~~~~~~i~~ 81 (159)
.||+|.. ...+.+++ +++++||++|+++++++|..|+++++++|+|||++ +.+++.+...|+..+..
T Consensus 152 ~~TiGi~-~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~ 228 (327)
T 3ohm_A 152 VPTTGII-EYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT 228 (327)
T ss_dssp CCCCSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT
T ss_pred CceeeEE-EEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhh
Confidence 3445522 33344444 67788999999999999999999999999999665 67788888889888877
Q ss_pred hcCCCCCcEEEEEeCCCCCCcC----------------CCCHHHHHHHHH----------HcCCcEEEeCCCCCCCHHHH
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQR----------------QVSSMDAQNVAR----------QLRIPYIECSAKVRINVDQA 135 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~sa~~~~~i~~~ 135 (159)
.....++|+++++||+|+.+++ ..+.+++..+.. ..++.++++||+++.||..+
T Consensus 229 ~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~v 308 (327)
T 3ohm_A 229 YPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFV 308 (327)
T ss_dssp SGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHH
T ss_pred hhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHH
Confidence 6555689999999999986433 467888888743 34577899999999999999
Q ss_pred HHHHHHHHHhccc
Q psy11289 136 FHELVRIVLLHTK 148 (159)
Q Consensus 136 ~~~l~~~~~~~~~ 148 (159)
|+.+...+.+...
T Consensus 309 F~~v~~~Il~~~l 321 (327)
T 3ohm_A 309 FAAVKDTILQLNL 321 (327)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhH
Confidence 9999999987654
No 107
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.88 E-value=5.9e-23 Score=142.75 Aligned_cols=137 Identities=18% Similarity=0.313 Sum_probs=96.2
Q ss_pred ccccccccccccccceEEEEEEECCe-eEEEEEEeCCCcccchH-HHHHHhhcCCEEEEEEECCChh-hHHHHHHHHHHH
Q psy11289 3 IESYFVTDYDPTIEDSYTKQCVIDDI-PARLDILDTAGQEEFSA-MREQYMRSGEGFLLVFSVTDRN-SFEEIYKFHRQI 79 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~-~~~~~~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i 79 (159)
+.+.|.+.++|+..+... +.+++. .+.+++|||||++++.. ++..+++++|++++|||+++.. ++..+..|+..+
T Consensus 28 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~ 105 (214)
T 2fh5_B 28 LTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQV 105 (214)
T ss_dssp HHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHH
T ss_pred hCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHH
Confidence 456688888766544433 566654 57788899999999987 8899999999999999999964 566666555444
Q ss_pred Hhh--cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHH-----------------------------------H-Hc--CC
Q psy11289 80 LRV--KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVA-----------------------------------R-QL--RI 119 (159)
Q Consensus 80 ~~~--~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----------------------------------~-~~--~~ 119 (159)
... ....++|+++|+||+|+.+..... .....+. . .+ ++
T Consensus 106 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (214)
T 2fh5_B 106 LIDSMALKNSPSLLIACNKQDIAMAKSAK-LIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKV 184 (214)
T ss_dssp HHHHHTSTTCCEEEEEEECTTSTTCCCHH-HHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCE
T ss_pred HhhhhhcccCCCEEEEEECCCCCCcccHH-HHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcE
Confidence 332 122468999999999997544321 1111111 1 11 56
Q ss_pred cEEEeCCCCC------CCHHHHHHHHHHH
Q psy11289 120 PYIECSAKVR------INVDQAFHELVRI 142 (159)
Q Consensus 120 ~~~~~sa~~~------~~i~~~~~~l~~~ 142 (159)
++++|||++| .|++++|+++.+.
T Consensus 185 ~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 185 EFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp EEEECBCC-------CCBCHHHHHHHHHH
T ss_pred EEEEeeccCCCccccccChHHHHHHHHHh
Confidence 7999999999 9999999999875
No 108
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.88 E-value=8.7e-24 Score=157.65 Aligned_cols=144 Identities=18% Similarity=0.207 Sum_probs=107.5
Q ss_pred cccccccccccccceE----------EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCC--------
Q psy11289 4 ESYFVTDYDPTIEDSY----------TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD-------- 65 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~----------~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~-------- 65 (159)
++-+.++|.||.++.+ ...+.+++ +.+++|||+|+++++++|..++++++++|||||+++
T Consensus 167 ~ri~~~~Y~PT~~Dil~~r~~T~Gi~~~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed 244 (362)
T 1zcb_A 167 DKLGVPDYIPSQQDILLARRPTKGIHEYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMED 244 (362)
T ss_dssp HHHTSTTCCCCHHHHHHCCCCCSSEEEEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTE
T ss_pred HHHhcCCCCCChhhhhhccCCccceEEEEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECcccccccccc
Confidence 4556778888865432 22344443 667889999999999999999999999999999999
Q ss_pred --hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcC----------------CCCHHHHHHHHH-----------H
Q psy11289 66 --RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQR----------------QVSSMDAQNVAR-----------Q 116 (159)
Q Consensus 66 --~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~----------------~~~~~~~~~~~~-----------~ 116 (159)
.+++.+...|+..+.......++|+|+++||+|+.+++ .++.+++..++. .
T Consensus 245 ~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~ 324 (362)
T 1zcb_A 245 RQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQ 324 (362)
T ss_dssp EEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC-
T ss_pred ccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCC
Confidence 78999999999998875444679999999999985322 267778877762 3
Q ss_pred cCCcEEEeCCCCCCCHHHHHHHHHHHHHhcccc
Q psy11289 117 LRIPYIECSAKVRINVDQAFHELVRIVLLHTKQ 149 (159)
Q Consensus 117 ~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 149 (159)
.++.+++|||++|.||.++|+++...+.+...+
T Consensus 325 ~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l~ 357 (362)
T 1zcb_A 325 RPLYHHFTTAINTENIRLVFRDVKDTILHDNLK 357 (362)
T ss_dssp -CCEEEECCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEEecCCchhHHHHHHHHHHHHHHHHHH
Confidence 357799999999999999999999998876543
No 109
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.88 E-value=2.3e-24 Score=154.16 Aligned_cols=138 Identities=22% Similarity=0.373 Sum_probs=102.6
Q ss_pred ccccccccccc-cceE-EEE--------------EEECCeeEEEEEEe-----------------------CCCcccchH
Q psy11289 5 SYFVTDYDPTI-EDSY-TKQ--------------CVIDDIPARLDILD-----------------------TAGQEEFSA 45 (159)
Q Consensus 5 ~~f~~~~~pt~-~~~~-~~~--------------~~~~~~~~~~~l~D-----------------------~~g~~~~~~ 45 (159)
+.|...+.||+ +..+ .+. ..+++..+.++||| ++|+++|.+
T Consensus 54 ~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~ 133 (255)
T 3c5h_A 54 DEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLAS 133 (255)
T ss_dssp TTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEEC
T ss_pred CccccccCCcccccccceeEeecccccccccccccccCCcEEEEEEEEccccccccccccccccccccccccchhhhhhh
Confidence 56777788886 4322 222 12567888999999 667777777
Q ss_pred HHHHHhh---------------------cCCEEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCc
Q psy11289 46 MREQYMR---------------------SGEGFLLVFSVTDR--NSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQ 102 (159)
Q Consensus 46 ~~~~~~~---------------------~~~~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~ 102 (159)
++..+++ ++|++|+|||++++ ++++.+..|+..+.......++|+++|+||+|+.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~ 213 (255)
T 3c5h_A 134 AEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE 213 (255)
T ss_dssp TTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH
T ss_pred hhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc
Confidence 7777776 79999999999998 999999999999877632257899999999999765
Q ss_pred CCCCHHHHHHHHHH-cCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 103 RQVSSMDAQNVARQ-LRIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 103 ~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
+.+ +++..+++. .+++++++||++|.|++++|+++++.+.
T Consensus 214 ~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 214 RYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp HHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 444 567777776 4899999999999999999999998763
No 110
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.88 E-value=3.9e-23 Score=152.75 Aligned_cols=137 Identities=16% Similarity=0.216 Sum_probs=98.6
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK 83 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 83 (159)
.+.|.+.+ ||++..+ ..+..++ +.++||||||++++..++..+++++|++|+|||+++++++..+..|+..+....
T Consensus 187 ~~~~~~~~-pT~~~~~-~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~ 262 (329)
T 3o47_A 187 LGEIVTTI-PTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED 262 (329)
T ss_dssp SSCCEEEE-EETTEEE-EEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCG
T ss_pred CCCCCCcc-cccceEE-EEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhh
Confidence 44555444 6777543 2233344 567779999999999999999999999999999999999999998888877655
Q ss_pred CCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHH-----HcCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 84 DRDEFPMLMVGNKADLDHQRQVSSMDAQNVAR-----QLRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 84 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
...++|+++|+||+|+.+... .++...... ..+++++++||++|.|++++|++|++.+.++
T Consensus 263 ~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 263 ELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp GGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred ccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHhc
Confidence 445889999999999875432 222222111 1235699999999999999999999987543
No 111
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.87 E-value=4.6e-23 Score=152.05 Aligned_cols=118 Identities=14% Similarity=0.156 Sum_probs=98.5
Q ss_pred eeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECC----------ChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy11289 28 IPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVT----------DRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKA 97 (159)
Q Consensus 28 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 97 (159)
+.+++++||++|+++++++|..|+++++++|+|||++ +.+++.+...|+..+.......++|+++++||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 4567888999999999999999999999999999998 788999999999998876555689999999999
Q ss_pred CCCCc---------------CCCCHHHHHHHHHH-c--------------------------CCcEEEeCCCCCCCHHHH
Q psy11289 98 DLDHQ---------------RQVSSMDAQNVARQ-L--------------------------RIPYIECSAKVRINVDQA 135 (159)
Q Consensus 98 D~~~~---------------~~~~~~~~~~~~~~-~--------------------------~~~~~~~sa~~~~~i~~~ 135 (159)
|+.++ ...+.+++..++.. + ++.++++||+++.||..+
T Consensus 239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v 318 (340)
T 4fid_A 239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV 318 (340)
T ss_dssp HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence 98431 11246666555432 2 366899999999999999
Q ss_pred HHHHHHHHHh
Q psy11289 136 FHELVRIVLL 145 (159)
Q Consensus 136 ~~~l~~~~~~ 145 (159)
|+.+...+++
T Consensus 319 F~~v~~~Il~ 328 (340)
T 4fid_A 319 FMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999987
No 112
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.86 E-value=2.4e-21 Score=141.93 Aligned_cols=133 Identities=14% Similarity=0.246 Sum_probs=104.8
Q ss_pred cccccccceEEEEEEECCeeEEEEEEeCCCcccc-----hHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcC
Q psy11289 10 DYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEF-----SAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD 84 (159)
Q Consensus 10 ~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~ 84 (159)
.+.||++..+. .+.+++ .+.+++||+||++++ ...+..+++++|++|+|||++++++++.+..|...+.....
T Consensus 34 ~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~ 111 (307)
T 3r7w_A 34 RLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRK 111 (307)
T ss_dssp GCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHH
T ss_pred CcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHH
Confidence 45677775553 344544 577888999999988 67888999999999999999999999998777554443221
Q ss_pred -CCCCcEEEEEeCCCCCC--cCC----CCHHHHHHHHHHcC---CcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 85 -RDEFPMLMVGNKADLDH--QRQ----VSSMDAQNVARQLR---IPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 85 -~~~~p~ivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
.+++|+++|+||+|+.+ .+. +..+++..+++.+| ++++++||++ .|+.++|..++..+..
T Consensus 112 ~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 112 YSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred hCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHHcC
Confidence 25789999999999976 343 55677888999987 6899999999 8999999998876543
No 113
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.85 E-value=3.6e-21 Score=149.16 Aligned_cols=140 Identities=15% Similarity=0.229 Sum_probs=103.2
Q ss_pred ccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcC
Q psy11289 5 SYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD 84 (159)
Q Consensus 5 ~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~ 84 (159)
+.|. .+.||++..+. .+..++ +.+++|||+|++++..++..+++++|++|+|||+++++++..+..|+..+.+...
T Consensus 345 ~~~~-~~~~T~~~~~~-~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~ 420 (497)
T 3lvq_E 345 GQSV-TTIPTVGFNVE-TVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE 420 (497)
T ss_dssp SSCC-CCCCCSSEEEE-EEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGG
T ss_pred CCCC-CcCCccceeEE-EEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhh
Confidence 3444 34578775543 233344 5677799999999999999999999999999999999999999999988877654
Q ss_pred CCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHc--------CCcEEEeCCCCCCCHHHHHHHHHHHHHhccccCCCC
Q psy11289 85 RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQL--------RIPYIECSAKVRINVDQAFHELVRIVLLHTKQCKNS 153 (159)
Q Consensus 85 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--------~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~ 153 (159)
..++|+++|+||+|+.+.. ..++ +...+ ++++++|||++|.|++++|++|.+.+.+..+...++
T Consensus 421 ~~~~p~ilv~NK~Dl~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~~~~~~~~ 492 (497)
T 3lvq_E 421 MRDAIILIFANKQDLPDAM--KPHE---IQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKLAAALEH 492 (497)
T ss_dssp GTTCEEEEEEECCSSSSCC--CHHH---HHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC---------
T ss_pred cCCCcEEEEEECCCCCcCC--CHHH---HHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcc
Confidence 4689999999999986532 2332 22333 345999999999999999999999887666555443
No 114
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.85 E-value=1.8e-20 Score=125.42 Aligned_cols=123 Identities=13% Similarity=0.203 Sum_probs=91.7
Q ss_pred cccccc-ceEEEEEEECCeeEEEEEEeCCCcccch------HHHHHHhh--cCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 11 YDPTIE-DSYTKQCVIDDIPARLDILDTAGQEEFS------AMREQYMR--SGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 11 ~~pt~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~--~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.|++. +.....+.+++. .+++|||||++++. .+...+++ +++++++|+|+++.++ ...|+..+.+
T Consensus 32 ~~~~~t~~~~~~~~~~~~~--~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~~ 106 (165)
T 2wji_A 32 NWPGVTVEKKEGEFEYNGE--KFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALER---NLYLTLQLME 106 (165)
T ss_dssp -----CCCCCEEEEEETTE--EEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHH---HHHHHHHHHH
T ss_pred CCCCcceeeeEEEEEECCc--EEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhH---hHHHHHHHHh
Confidence 334443 444566667765 46779999998774 45566765 8999999999998654 3457666654
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
.+.|+++|+||+|+...+.++. ++..+++.++++++++||++|.|++++|+++.+.+
T Consensus 107 ----~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 107 ----MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp ----TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred ----cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3689999999999865555543 46788888999999999999999999999998765
No 115
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.83 E-value=1.8e-20 Score=127.58 Aligned_cols=137 Identities=15% Similarity=0.227 Sum_probs=101.4
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCC-----------cccchHHHHHHhhc-CCEEEEEEECCChhhHHH
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAG-----------QEEFSAMREQYMRS-GEGFLLVFSVTDRNSFEE 71 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~~~~~~~~~-~~~ii~v~d~~~~~s~~~ 71 (159)
.+.|...+.|++.... ..+..+ .+.+||||| ++++...+..++++ +++++++|++.|+.++..
T Consensus 23 ~~~~~~~~~~~~t~~~-~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~ 97 (190)
T 2cxx_A 23 GKKVRRGKRPGVTRKI-IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPE 97 (190)
T ss_dssp SCCCSSSSSTTCTTSC-EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHH
T ss_pred CcCCccCCCCCcccee-EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhh
Confidence 4556666777655332 222333 467799999 67788888888887 888888888888888887
Q ss_pred H-HHHHHH--------HHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCc-------EEEeCCCCCCCHHHH
Q psy11289 72 I-YKFHRQ--------ILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIP-------YIECSAKVRINVDQA 135 (159)
Q Consensus 72 ~-~~~~~~--------i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-------~~~~sa~~~~~i~~~ 135 (159)
+ ..|... +.......++|+++|+||+|+.+.. .++...+++.++++ ++++||++|.|++++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 174 (190)
T 2cxx_A 98 IIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERL 174 (190)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHH
T ss_pred HHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHH
Confidence 7 566542 2222222578999999999987644 56778888888874 799999999999999
Q ss_pred HHHHHHHHHhccc
Q psy11289 136 FHELVRIVLLHTK 148 (159)
Q Consensus 136 ~~~l~~~~~~~~~ 148 (159)
|+++.+.+.+.+.
T Consensus 175 ~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 175 KNRIFEVIRERQG 187 (190)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHhcchhhc
Confidence 9999999876654
No 116
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.83 E-value=2.4e-19 Score=125.91 Aligned_cols=128 Identities=14% Similarity=0.143 Sum_probs=92.2
Q ss_pred ceEEEEEEECCeeEEEEEEeCCCc------ccc---hHHHHHHhhcCCEEEEEEECCChhhHH--HHHHHHHHHHhhcCC
Q psy11289 17 DSYTKQCVIDDIPARLDILDTAGQ------EEF---SAMREQYMRSGEGFLLVFSVTDRNSFE--EIYKFHRQILRVKDR 85 (159)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~D~~g~------~~~---~~~~~~~~~~~~~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~ 85 (159)
+.....+..++ ..+.+|||||+ ++. ...+..++..+|++|+|||++++.++. ....|+..+....
T Consensus 65 ~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-- 140 (228)
T 2qu8_A 65 NLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-- 140 (228)
T ss_dssp CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--
T ss_pred eeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh--
Confidence 33344444455 45667999999 442 122345578899999999999988864 2335666655432
Q ss_pred CCCcEEEEEeCCCCCCcCCCCHH---HHHHHHHHcC--CcEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 86 DEFPMLMVGNKADLDHQRQVSSM---DAQNVARQLR--IPYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 86 ~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
.+.|+++|+||+|+.+.+.+... ....++...+ ++++++||++|.|++++|+++++.+.+.+.
T Consensus 141 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~ 208 (228)
T 2qu8_A 141 SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQA 208 (228)
T ss_dssp -CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHHH
Confidence 47899999999999877777654 4556677777 889999999999999999999998876553
No 117
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.83 E-value=9e-21 Score=148.20 Aligned_cols=140 Identities=16% Similarity=0.147 Sum_probs=102.5
Q ss_pred ccccccccccccccceEEEE-------EEE--CCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHH
Q psy11289 3 IESYFVTDYDPTIEDSYTKQ-------CVI--DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY 73 (159)
Q Consensus 3 ~~~~f~~~~~pt~~~~~~~~-------~~~--~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~ 73 (159)
+.+.|.+.+.||++..+... +.+ ++..+.+.+||+||++.+..++..+++++|++|+|||+++. +.+.
T Consensus 62 ~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~ 138 (535)
T 3dpu_A 62 IGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKH 138 (535)
T ss_dssp HC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHH
T ss_pred hcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHH
Confidence 34567788899999776332 222 34467788899999999999999999999999999999875 4556
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 74 KFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 74 ~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.|+..+.... .+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++++++.+.+.+..
T Consensus 139 ~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 139 YWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp HHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTCTT
T ss_pred HHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhccc
Confidence 7888887775 46899999999999888888888888899899999999999999999999999999886543
No 118
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.83 E-value=2.9e-20 Score=125.24 Aligned_cols=133 Identities=19% Similarity=0.252 Sum_probs=97.5
Q ss_pred cccccccccccccceE-EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCC---hhhHHHHHHHHHHH
Q psy11289 4 ESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD---RNSFEEIYKFHRQI 79 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i 79 (159)
.+.|...+.|++...+ ...+.+++..+ .+|||||++++..++..+++.+|++++|||+++ +.+++.+ ..+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l----~~~ 103 (178)
T 2lkc_A 30 HSKVTEQEAGGITQHIGAYQVTVNDKKI--TFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAI----NHA 103 (178)
T ss_dssp TTCSSCSSCCSSSTTCCCCEEEETTEEE--EESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHH----HHH
T ss_pred CCccccCCCCceeEeeeEEEEEeCCceE--EEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH----HHH
Confidence 4566667777776443 56677788765 569999999998888888999999999999998 4444433 222
Q ss_pred HhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHc-------C--CcEEEeCCCCCCCHHHHHHHHHHHHHhcccc
Q psy11289 80 LRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQL-------R--IPYIECSAKVRINVDQAFHELVRIVLLHTKQ 149 (159)
Q Consensus 80 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 149 (159)
.. .++|+++|+||+|+.+. ..++........ + ++++++||++|.|++++|+++++.+...+.+
T Consensus 104 ~~----~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~ 175 (178)
T 2lkc_A 104 KA----ANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEELK 175 (178)
T ss_dssp GG----GSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTT
T ss_pred Hh----CCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhhccc
Confidence 21 46899999999998653 233333333222 2 4799999999999999999999988766544
No 119
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.81 E-value=2.4e-19 Score=121.94 Aligned_cols=128 Identities=13% Similarity=0.212 Sum_probs=97.7
Q ss_pred ccccccc-ceEEEEEEECCeeEEEEEEeCCCcccch------HHHHHHhh--cCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 10 DYDPTIE-DSYTKQCVIDDIPARLDILDTAGQEEFS------AMREQYMR--SGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 10 ~~~pt~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~--~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
.+.|++. +.....+..++. .+++|||||++++. .++..++. .++++++|+|.++ ++....|+..+.
T Consensus 35 ~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~ 109 (188)
T 2wjg_A 35 GNWPGVTVEKKEGEFEYNGE--KFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLM 109 (188)
T ss_dssp EECTTSCCEEEEEEEEETTE--EEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHH
T ss_pred cCCCCeeccceEEEEEeCCc--EEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHH
Confidence 3344444 444666777764 46679999998874 45667765 4999999999876 455567777665
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
. .+.|+++|+||+|+...+.+. .+...+++.++++++++||++|.|++++|+++.+.+.+..
T Consensus 110 ~----~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 110 E----MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp T----TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred h----cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence 4 468999999999987655554 3567888889999999999999999999999999886654
No 120
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.80 E-value=2.2e-19 Score=122.77 Aligned_cols=133 Identities=14% Similarity=0.222 Sum_probs=85.3
Q ss_pred cccccccccccccceE-EEEEEECCeeEEEEEEeCCC----------cccchHHHHHHhhcC---CEEEEEEECCChhhH
Q psy11289 4 ESYFVTDYDPTIEDSY-TKQCVIDDIPARLDILDTAG----------QEEFSAMREQYMRSG---EGFLLVFSVTDRNSF 69 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~~~~~~~~---~~ii~v~d~~~~~s~ 69 (159)
.+.|...+.++.+... ......++ .+.+||||| ++.+..++..+++.+ |++++|+|++++.++
T Consensus 45 ~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 121 (195)
T 1svi_A 45 NRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSN 121 (195)
T ss_dssp TC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH
T ss_pred CCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCH
Confidence 3445566667666333 33334444 366799999 778888888888877 999999999998777
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCH--HHHHH-HHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 70 EEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSS--MDAQN-VARQLRIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 70 ~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
.... ++..+.. .+.|+++|+||+|+.+.+.+.. ++..+ ++...+++++++||++|.|++++|+++.+.+.
T Consensus 122 ~~~~-~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 122 DDVQ-MYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp HHHH-HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHH-HHHHHHH----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 6643 1222222 5689999999999976554422 22222 22223578999999999999999999998763
No 121
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.80 E-value=5e-20 Score=124.21 Aligned_cols=126 Identities=25% Similarity=0.288 Sum_probs=93.5
Q ss_pred cccccccccceEEEEEEECCeeEEEEEEeCCCcccchHH--------HHHHhhcCCEEEEEEECCChhhHHHHHHHHHHH
Q psy11289 8 VTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAM--------REQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQI 79 (159)
Q Consensus 8 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i 79 (159)
...+++|+.+.+...+.+++.. +++|||||++++... ...+++++|++++|||++++.++.. ..|+..+
T Consensus 32 ~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~ 108 (172)
T 2gj8_A 32 VTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEF 108 (172)
T ss_dssp CCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHH
T ss_pred eeCCCCceeceeeEEEEECCeE--EEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHH
Confidence 4556666667777888888876 566999999753211 1245789999999999999888763 5777777
Q ss_pred HhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 80 LRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 80 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
.+... .++|+++|+||+|+.+... .++...+++++++||++|.|++++|+++.+.+.
T Consensus 109 ~~~~~-~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 109 IARLP-AKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp HHHSC-TTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred HHhcc-cCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 66542 4789999999999854211 122234678999999999999999999988764
No 122
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.80 E-value=1.8e-19 Score=119.45 Aligned_cols=124 Identities=15% Similarity=0.118 Sum_probs=85.7
Q ss_pred cccccccccceEEEEEEECCeeEEEEEEeCCCccc-------chHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 8 VTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEE-------FSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 8 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
...+++++.+.....+..++.. +.+||+||+.. +...+..+++.+|++++|+|++++.+... .|+....
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~ 104 (161)
T 2dyk_A 29 VADVPGVTRDLKEGVVETDRGR--FLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYL 104 (161)
T ss_dssp ---------CCEEEEEEETTEE--EEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHH
T ss_pred ccCCCCceecceEEEEEeCCce--EEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHH
Confidence 3445555556666777777775 56699999987 34566778899999999999998644322 2233332
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
.. .+.|+++|+||+|+.+.. ++..+++ .+++ +++++||++|.|++++|+++++.+
T Consensus 105 ~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 105 RR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp HH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred Hh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 22 467999999999987542 2334555 6787 799999999999999999998764
No 123
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.79 E-value=3.3e-19 Score=136.95 Aligned_cols=137 Identities=16% Similarity=0.181 Sum_probs=100.9
Q ss_pred cccccccccccceEEEEEEECCeeEEEEEEeCCC----------cccchHHHHH-HhhcCCEEEEEEECCChhhHHHHHH
Q psy11289 6 YFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAG----------QEEFSAMREQ-YMRSGEGFLLVFSVTDRNSFEEIYK 74 (159)
Q Consensus 6 ~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~~~-~~~~~~~ii~v~d~~~~~s~~~~~~ 74 (159)
.+...+++|+.+.+...+..++.. ++|||||| +++|..+... +++.+|++++|+|+++..+... ..
T Consensus 221 ~~~~~~~gtt~~~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~-~~ 297 (456)
T 4dcu_A 221 VIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQD-KR 297 (456)
T ss_dssp EEECC------CTTSEEEEETTEE--EEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHH-HH
T ss_pred cccCCCCCeEEEEEEEEEEECCce--EEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHH-HH
Confidence 356677777777767777888875 55699999 6777776554 7899999999999988544322 34
Q ss_pred HHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHc-----CCcEEEeCCCCCCCHHHHHHHHHHHHHhcccc
Q psy11289 75 FHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQL-----RIPYIECSAKVRINVDQAFHELVRIVLLHTKQ 149 (159)
Q Consensus 75 ~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 149 (159)
|...+.. .++|+++|+||+|+.+.+..+.++..+.++.. +++++++||++|.|++++|+++.+.+......
T Consensus 298 ~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~ 373 (456)
T 4dcu_A 298 IAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLR 373 (456)
T ss_dssp HHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred HHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhccc
Confidence 4444444 56899999999999877777777777776654 58899999999999999999999887655433
No 124
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.79 E-value=5.2e-18 Score=124.28 Aligned_cols=131 Identities=15% Similarity=0.093 Sum_probs=102.3
Q ss_pred ccccccccceEEEEEEEC-CeeEEEEEEeCCCcccch----------HHHHHHhhcCCEEEEEEECCChhhHHHHHHHHH
Q psy11289 9 TDYDPTIEDSYTKQCVID-DIPARLDILDTAGQEEFS----------AMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHR 77 (159)
Q Consensus 9 ~~~~pt~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~----------~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~ 77 (159)
...++|+..........+ +.+ +.||||||+.++. ..+..+++++|++++|+|++++.+..+...|+.
T Consensus 39 s~~~~tT~~~~~~~~~~~~~~~--i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~ 116 (308)
T 3iev_A 39 SPKAGTTRMRVLGVKNIPNEAQ--IIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQN 116 (308)
T ss_dssp CSSSCCCCSCEEEEEEETTTEE--EEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH
T ss_pred CCCCCceeeEEEEEEecCCCCe--EEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHH
Confidence 445555555555555555 555 5669999996543 566778899999999999999988888777777
Q ss_pred HHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcC--CcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 78 QILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLR--IPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 78 ~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
.+.. .+.|+++|+||+|+........+....+++.++ .+++++||++|.|++++|+++.+.+.+
T Consensus 117 ~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 117 FIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp HTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred HHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCcc
Confidence 7655 468999999999997444455667777888876 789999999999999999999988754
No 125
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.78 E-value=2.1e-18 Score=123.45 Aligned_cols=127 Identities=13% Similarity=0.190 Sum_probs=95.3
Q ss_pred cccccccccceEEEEEEECCeeEEEEEEeCCCcccchH------HHHHHh--hcCCEEEEEEECCChhhHHHHHHHHHHH
Q psy11289 8 VTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSA------MREQYM--RSGEGFLLVFSVTDRNSFEEIYKFHRQI 79 (159)
Q Consensus 8 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~--~~~~~ii~v~d~~~~~s~~~~~~~~~~i 79 (159)
.+++++++-+.....+..++. .+.+||+||+..+.+ +...++ .++|++++|+|+++.++.. .|..++
T Consensus 32 ~~~~pg~tv~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~---~~~~~l 106 (258)
T 3a1s_A 32 VANWPGVTVEKKEGVFTYKGY--TINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSL---YLLLEI 106 (258)
T ss_dssp EEECTTSCCEEEEEEEEETTE--EEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHH---HHHHHH
T ss_pred ccCCCCceEEEEEEEEEECCe--EEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHH---HHHHHH
Confidence 344554444444555555554 566699999987753 345665 5899999999999976543 355555
Q ss_pred HhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 80 LRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 80 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
.. .++|+++|+||+|+.+.+.+.. +...+++.+|++++++||++|.|++++|+++.+.+.
T Consensus 107 ~~----~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 107 LE----MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp HT----TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred Hh----cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 44 4689999999999876555553 467889999999999999999999999999998764
No 126
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.78 E-value=5.3e-19 Score=126.42 Aligned_cols=126 Identities=15% Similarity=0.165 Sum_probs=96.1
Q ss_pred ccccccccccceEEEEEEECCeeEEEEEEeCCCcccchH----------HHHHHh--hcCCEEEEEEECCChhhHHHHHH
Q psy11289 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSA----------MREQYM--RSGEGFLLVFSVTDRNSFEEIYK 74 (159)
Q Consensus 7 f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~~~~~~--~~~~~ii~v~d~~~~~s~~~~~~ 74 (159)
.++++++++.+.....+..++.. +.+|||||...+.+ +...++ +++|++++|+|+++.++...+..
T Consensus 27 ~v~~~pg~Tv~~~~~~~~~~~~~--~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~ 104 (256)
T 3iby_A 27 RVGNWPGVTVEKKTGEFLLGEHL--IEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTS 104 (256)
T ss_dssp EEEECTTSSSEEEEEEEEETTEE--EEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHH
T ss_pred CccCCCCceEEEEEEEEEECCeE--EEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHH
Confidence 34556555556667777888875 55699999987653 456677 89999999999999776655443
Q ss_pred HHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 75 FHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 75 ~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
|+ .. .++|+++|+||+|+.+.+.+.. ....+++.+|++++++||++|.|++++|+++.+.
T Consensus 105 ~l---~~----~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 105 QL---FE----LGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp HH---TT----SCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred HH---HH----cCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 32 22 4689999999999865554433 3456888899999999999999999999999876
No 127
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.77 E-value=6.2e-19 Score=134.73 Aligned_cols=133 Identities=17% Similarity=0.198 Sum_probs=95.2
Q ss_pred cccccccccceEEEEEEECCeeEEEEEEeCCCc----------ccchHHHH-HHhhcCCEEEEEEECCChhhHHHHHHHH
Q psy11289 8 VTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQ----------EEFSAMRE-QYMRSGEGFLLVFSVTDRNSFEEIYKFH 76 (159)
Q Consensus 8 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~~~-~~~~~~~~ii~v~d~~~~~s~~~~~~~~ 76 (159)
..++++|+.+.+...+..++.. ++||||||+ ++|..+.. .+++.+|++++|+|++++.++++. .|+
T Consensus 203 ~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~ 279 (436)
T 2hjg_A 203 VSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIA 279 (436)
T ss_dssp EC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHH
T ss_pred ecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHH
Confidence 5666777777777777888876 456999998 56655544 478899999999999998888775 566
Q ss_pred HHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHH-HHHHH----cCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 77 RQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQ-NVARQ----LRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 77 ~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~~~~----~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
..+.. .++|+++|+||+|+.+.+..+.++.. .+.+. .+++++++||++|.|++++|+.+.+.+....
T Consensus 280 ~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 280 GYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp HHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred HHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence 66544 56899999999999876665444432 23333 3688999999999999999999998876544
No 128
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.77 E-value=1.6e-18 Score=124.95 Aligned_cols=128 Identities=16% Similarity=0.252 Sum_probs=96.5
Q ss_pred cccccccccccceEEEEEEECCeeEEEEEEeCCCcccch------HHHHHHhh--cCCEEEEEEECCChhhHHHHHHHHH
Q psy11289 6 YFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFS------AMREQYMR--SGEGFLLVFSVTDRNSFEEIYKFHR 77 (159)
Q Consensus 6 ~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~--~~~~ii~v~d~~~~~s~~~~~~~~~ 77 (159)
.+++++++++-+.... .++. ...+++|||||++++. .++..++. ++|++++|+|+++.++. ..|..
T Consensus 28 ~~v~~~pg~tv~~~~~--~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~ 101 (272)
T 3b1v_A 28 QRVGNWPGVTVERKSG--LVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERN---LYLTT 101 (272)
T ss_dssp CCCCSSSCCCCSCEEE--ECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHH
T ss_pred CcccCCCCCcEEEEEE--EEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHH
Confidence 3566776554443332 3344 4567779999998875 46677776 69999999999987654 34555
Q ss_pred HHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 78 QILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 78 ~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
++.+ .++|+++|+||+|+.+.+.+. .+...+++.+|++++++||++|.|++++|+++.+.+.
T Consensus 102 ~l~~----~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 102 QLIE----TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp HHHH----TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred HHHh----cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence 5554 468999999999987655554 3567888899999999999999999999999988653
No 129
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.74 E-value=1.5e-17 Score=113.41 Aligned_cols=107 Identities=11% Similarity=0.126 Sum_probs=80.2
Q ss_pred EEEEeCCC----------cccchHHHHHHhhcC---CEEEEEEECCChhhH--HHHHHHHHHHHhhcCCCCCcEEEEEeC
Q psy11289 32 LDILDTAG----------QEEFSAMREQYMRSG---EGFLLVFSVTDRNSF--EEIYKFHRQILRVKDRDEFPMLMVGNK 96 (159)
Q Consensus 32 ~~l~D~~g----------~~~~~~~~~~~~~~~---~~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK 96 (159)
+.+||||| ++.+..++..+++.+ |++++|+|++++.+. ..+..|+.. .+.|+++|+||
T Consensus 70 ~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK 142 (195)
T 3pqc_A 70 YYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------LNIPFTIVLTK 142 (195)
T ss_dssp EEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEEC
T ss_pred EEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------cCCCEEEEEEC
Confidence 45699999 677788888888776 999999999876433 333344432 36899999999
Q ss_pred CCCCCcCC--CCHHHHHHHHHHcC-CcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 97 ADLDHQRQ--VSSMDAQNVARQLR-IPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 97 ~D~~~~~~--~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
+|+.+... ...++...++...+ ++++++||++|.|++++|+++.+.+.+
T Consensus 143 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 143 MDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp GGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred hhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 99865332 22344556666544 789999999999999999999988743
No 130
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.74 E-value=1.3e-17 Score=128.35 Aligned_cols=131 Identities=18% Similarity=0.141 Sum_probs=78.2
Q ss_pred cccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHH--------HhhcCCEEEEEEECCChhhHHHHHHHHH
Q psy11289 6 YFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQ--------YMRSGEGFLLVFSVTDRNSFEEIYKFHR 77 (159)
Q Consensus 6 ~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~--------~~~~~~~ii~v~d~~~~~s~~~~~~~~~ 77 (159)
.++.++++|+.+.+...+.++|.+ +.+|||||+.++...++. +++++|++++|+|++++.++..+..+..
T Consensus 259 a~vs~~~gtT~d~~~~~i~~~g~~--l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~ 336 (476)
T 3gee_A 259 AIVSHMPGTTRDYIEECFIHDKTM--FRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRE 336 (476)
T ss_dssp --------------CEEEEETTEE--EEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHH
T ss_pred cccCCCCCceEEEEEEEEEECCeE--EEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHH
Confidence 356777778777777788888876 555999999876654433 5789999999999999888754333322
Q ss_pred HHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 78 QILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 78 ~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
.+ ... .++|+++|+||+|+...... ....+++....+++++||++|.|++++++++.+.+.
T Consensus 337 ~l-~~l--~~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 337 LK-AAH--PAAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp HH-HHC--TTSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred HH-Hhc--CCCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 22 222 36899999999999765433 223444442478999999999999999999999886
No 131
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=5.2e-19 Score=123.09 Aligned_cols=104 Identities=18% Similarity=0.313 Sum_probs=78.6
Q ss_pred eeEEEEEEeCCCcccchHHHHHHhhc----CCEEEEEEECC-ChhhHHHHHHHHHHHHhhcC---CCCCcEEEEEeCCCC
Q psy11289 28 IPARLDILDTAGQEEFSAMREQYMRS----GEGFLLVFSVT-DRNSFEEIYKFHRQILRVKD---RDEFPMLMVGNKADL 99 (159)
Q Consensus 28 ~~~~~~l~D~~g~~~~~~~~~~~~~~----~~~ii~v~d~~-~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~D~ 99 (159)
..+.+++||+||++++...+..+++. +|++++|||++ +++++..+..|+..+..... ..++|+++|+||+|+
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 132 (218)
T 1nrj_B 53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 132 (218)
T ss_dssp GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence 34557779999999999989999887 89999999999 88999999999888876532 257899999999999
Q ss_pred CCcCCCC------HHHHHHHHHHcCCcEEEeCCCCCCC
Q psy11289 100 DHQRQVS------SMDAQNVARQLRIPYIECSAKVRIN 131 (159)
Q Consensus 100 ~~~~~~~------~~~~~~~~~~~~~~~~~~sa~~~~~ 131 (159)
...+.+. .++...++...+++++++||++|.+
T Consensus 133 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 133 FTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 8766544 3456677777778899999998764
No 132
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.74 E-value=4.8e-18 Score=122.55 Aligned_cols=127 Identities=12% Similarity=0.165 Sum_probs=93.0
Q ss_pred cccccccccceEEEEEEECCeeEEEEEEeCCCcccch----------HHHHHHh--hcCCEEEEEEECCChhhHHHHHHH
Q psy11289 8 VTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFS----------AMREQYM--RSGEGFLLVFSVTDRNSFEEIYKF 75 (159)
Q Consensus 8 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----------~~~~~~~--~~~~~ii~v~d~~~~~s~~~~~~~ 75 (159)
+.++++++.+.....+..++..+ .+|||||+..+. .....++ +++|++++|+|+++.++...+..+
T Consensus 30 v~~~~g~t~~~~~~~~~~~~~~~--~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~ 107 (274)
T 3i8s_A 30 VGNWAGVTVERKEGQFSTTDHQV--TLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQ 107 (274)
T ss_dssp EEECTTSSSEEEEEEEECSSCEE--EEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHH
T ss_pred cCCCCCeeEEEEEEEEEeCCCce--EEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHH
Confidence 34455555555567777777665 559999998765 2233443 699999999999997665544443
Q ss_pred HHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 76 HRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 76 ~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
+.+ .++|+++|+||+|+.+.+.+.. ....+++.+|++++++||++|.|++++++++.+.+.
T Consensus 108 ---l~~----~~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 108 ---LLE----LGIPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp ---HHH----HTCCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred ---HHh----cCCCEEEEEECccchhhhhHHH-HHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 333 2679999999999865444322 346788889999999999999999999999987654
No 133
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.72 E-value=1.4e-16 Score=122.78 Aligned_cols=128 Identities=21% Similarity=0.171 Sum_probs=97.4
Q ss_pred cccccccccccceEEEEEEECCeeEEEEEEeCCCcc-cch--------HHHHHHhhcCCEEEEEEECCChhhHHHHHHHH
Q psy11289 6 YFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQE-EFS--------AMREQYMRSGEGFLLVFSVTDRNSFEEIYKFH 76 (159)
Q Consensus 6 ~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~-~~~--------~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~ 76 (159)
.++.++++|+.+.....+.+++.++ .+|||+|.. .+. .....+++.+|++|+|+|++++.++++.. ++
T Consensus 269 a~vs~~~gTT~d~~~~~i~~~g~~~--~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il 345 (482)
T 1xzp_A 269 AIVTDIPGTTRDVISEEIVIRGILF--RIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-IL 345 (482)
T ss_dssp CCCCCSSCCSSCSCCEEEEETTEEE--EEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HH
T ss_pred CccCCCCCeeeeeEEEEEecCCeEE--EEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HH
Confidence 4577888888888778888888775 559999997 543 23456789999999999999988876643 22
Q ss_pred HHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 77 RQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 77 ~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
.. . .++|+++|+||+|+.+. ++.++...++. .+++++++||++|.|++++++++.+.+..
T Consensus 346 ~~----l--~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 346 ER----I--KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp HH----H--TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred HH----h--cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 22 2 36799999999999653 44444444432 34789999999999999999999997663
No 134
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.72 E-value=7.2e-17 Score=116.17 Aligned_cols=128 Identities=13% Similarity=0.165 Sum_probs=95.3
Q ss_pred cccccc-ceEEEEEEECCeeEEEEEEeCCCcccchH------HHHHHh--hcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 11 YDPTIE-DSYTKQCVIDDIPARLDILDTAGQEEFSA------MREQYM--RSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 11 ~~pt~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~--~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
..|++. +.....+..++.. +.+||+||+..+.. .+..++ .++|++++|+|+++.+. ...|..++..
T Consensus 32 ~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~---~~~~~~~~~~ 106 (271)
T 3k53_A 32 NWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMR---NLFLTLELFE 106 (271)
T ss_dssp ECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHH---HHHHHHHHHH
T ss_pred CCCCeEEEeeEEEEEECCce--EEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchh---hHHHHHHHHh
Confidence 334444 4446667777776 55699999987755 566666 68999999999998643 3344445544
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
. ...|+++|+||+|+.+.+.+.. ....+++.+|++++++||++|.|++++|+.+...+....
T Consensus 107 ~---~~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 107 M---EVKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp T---TCCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHTCC
T ss_pred c---CCCCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhccc
Confidence 2 2389999999999865444443 267788899999999999999999999999999876543
No 135
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.71 E-value=2.3e-16 Score=124.30 Aligned_cols=115 Identities=23% Similarity=0.308 Sum_probs=94.3
Q ss_pred CCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCC
Q psy11289 26 DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQV 105 (159)
Q Consensus 26 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 105 (159)
++..+.++||||||+.+|...+..+++.+|++|+|+|+++..+.+....|.... . .++|+++++||+|+.+.+
T Consensus 67 ~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~-- 139 (599)
T 3cb4_D 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAAD-- 139 (599)
T ss_dssp TSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC--
T ss_pred CCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCccccc--
Confidence 566788999999999999999999999999999999999987777766665443 2 467999999999997543
Q ss_pred CHHHHHHHHHHcCCc---EEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 106 SSMDAQNVARQLRIP---YIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 106 ~~~~~~~~~~~~~~~---~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
..+...++++.+++. ++++||++|.|++++++++.+.+....
T Consensus 140 ~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~ 184 (599)
T 3cb4_D 140 PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE 184 (599)
T ss_dssp HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence 233456677777764 999999999999999999998876544
No 136
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.70 E-value=1.1e-16 Score=111.61 Aligned_cols=115 Identities=12% Similarity=0.109 Sum_probs=77.6
Q ss_pred eEEEEEEeCCC----------cccchHHHHHHhhc---CCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEe
Q psy11289 29 PARLDILDTAG----------QEEFSAMREQYMRS---GEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGN 95 (159)
Q Consensus 29 ~~~~~l~D~~g----------~~~~~~~~~~~~~~---~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~n 95 (159)
...+.|||||| ++.+..+...+++. +|++++|+|++++.+... ..|+..+.. .++|+++|+|
T Consensus 78 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~----~~~p~i~v~n 152 (223)
T 4dhe_A 78 EPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP----TGKPIHSLLT 152 (223)
T ss_dssp SCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG----GCCCEEEEEE
T ss_pred CCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh----cCCCEEEEEe
Confidence 34566799999 45556677777776 788999999988544222 234444433 4679999999
Q ss_pred CCCCCCcCCCC--HHHHHHHHHH-------cCCcEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 96 KADLDHQRQVS--SMDAQNVARQ-------LRIPYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 96 K~D~~~~~~~~--~~~~~~~~~~-------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
|+|+....... .+...+.... .+++++++||++|.|++++|+++.+.+.....
T Consensus 153 K~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~ 214 (223)
T 4dhe_A 153 KCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAAA 214 (223)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred ccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccCC
Confidence 99987533321 1111222222 45679999999999999999999998865543
No 137
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.70 E-value=2.4e-17 Score=125.15 Aligned_cols=128 Identities=16% Similarity=0.145 Sum_probs=92.8
Q ss_pred ccccccccceEEEEEEECCeeEEEEEEeCCCcccchHH-------HHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 9 TDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAM-------REQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 9 ~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
+.+.+|+.+...+.+..++.. .+.+|||||++++..+ +..+++++|++|+|+|++..+. ...|+..+.+
T Consensus 63 ~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~~---~~~~l~~l~~ 138 (423)
T 3qq5_A 63 SDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPY---EDDVVNLFKE 138 (423)
T ss_dssp -------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCHH---HHHHHHHHHH
T ss_pred CCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChHH---HHHHHHHHHh
Confidence 445555556556677776542 5667999999876543 4567889999999999943333 3456666655
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
.++|+++|+||+|+...+.. +....+++.++++++++||++|.|++++|+++.+.+.+.
T Consensus 139 ----~~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 139 ----MEIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp ----TTCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred ----cCCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 36899999999999765554 566677777889999999999999999999999988544
No 138
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.70 E-value=2e-16 Score=120.96 Aligned_cols=129 Identities=18% Similarity=0.214 Sum_probs=87.0
Q ss_pred ccccccccccceEEEEEEECCeeEEEEEEeCCCccc---------chHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHH
Q psy11289 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEE---------FSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHR 77 (159)
Q Consensus 7 f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~ 77 (159)
+++++++++.+.....+.+++..+ ++|||||.+. +...+..+++++|++++|+|++++.+..+ .++.
T Consensus 28 ~v~~~~g~T~d~~~~~~~~~~~~~--~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~ 103 (439)
T 1mky_A 28 IVEDEEGVTRDPVQDTVEWYGKTF--KLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED--ESLA 103 (439)
T ss_dssp ----------CCSEEEEEETTEEE--EEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHH
T ss_pred eecCCCCCccceeeEEEEECCeEE--EEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHH
Confidence 466777777777788888898875 5599999764 34567788999999999999988654432 2222
Q ss_pred HHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHH-HHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 78 QILRVKDRDEFPMLMVGNKADLDHQRQVSSMDA-QNVARQLRI-PYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 78 ~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
.+.+. .++|+++|+||+|+.+. . ..+. .+++ .+|+ +++++||++|.|+.++++++...+.+.
T Consensus 104 ~~l~~---~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 104 DFLRK---STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp HHHHH---HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHHH---cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhcccc
Confidence 22222 36799999999997532 1 1222 3443 5677 699999999999999999999988643
No 139
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.69 E-value=4e-16 Score=122.80 Aligned_cols=115 Identities=21% Similarity=0.309 Sum_probs=94.0
Q ss_pred CCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCC
Q psy11289 26 DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQV 105 (159)
Q Consensus 26 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 105 (159)
++..+.++||||||+.+|...+..+++.+|++|+|+|+++..+.+....|.... . .++|+++++||+|+....
T Consensus 69 dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-- 141 (600)
T 2ywe_A 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-- 141 (600)
T ss_dssp TSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC--
T ss_pred CCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC--
Confidence 566788999999999999998999999999999999999988877777665443 2 468999999999987533
Q ss_pred CHHHHHHHHHHcCCc---EEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 106 SSMDAQNVARQLRIP---YIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 106 ~~~~~~~~~~~~~~~---~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
..+...++++.+++. ++++||++|.|++++++++++.+....
T Consensus 142 ~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 142 VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence 233445666777764 999999999999999999998876544
No 140
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.69 E-value=6.2e-16 Score=115.36 Aligned_cols=130 Identities=17% Similarity=0.183 Sum_probs=95.1
Q ss_pred cccccceEEEEEEECCeeEEEEEEeCCCcccch---------HHHHHHhhcCCEEEEEEECCChh--hHHHHHHHHHHHH
Q psy11289 12 DPTIEDSYTKQCVIDDIPARLDILDTAGQEEFS---------AMREQYMRSGEGFLLVFSVTDRN--SFEEIYKFHRQIL 80 (159)
Q Consensus 12 ~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~~~~~~ii~v~d~~~~~--s~~~~~~~~~~i~ 80 (159)
+.++.......+..++. .+.+|||||..... .....+...+|++++|+|++++. ++.....|+..+.
T Consensus 198 ~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~ 275 (357)
T 2e87_A 198 PFTTRGINVGQFEDGYF--RYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVH 275 (357)
T ss_dssp TTCSSCEEEEEEEETTE--EEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHH
T ss_pred CCeeeceeEEEEEecCc--eEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHH
Confidence 33333333333444443 46779999985431 12223445799999999999887 7788888988887
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
... .+.|+++|+||+|+.+... .++...++...+++++++||++|.|++++++++.+.+....
T Consensus 276 ~~~--~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~~ 338 (357)
T 2e87_A 276 GEF--KDLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPLA 338 (357)
T ss_dssp HHT--TTSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred Hhc--CCCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHHHH
Confidence 764 2789999999999875433 24456677778899999999999999999999999886543
No 141
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.69 E-value=9.2e-17 Score=117.33 Aligned_cols=128 Identities=13% Similarity=-0.007 Sum_probs=94.5
Q ss_pred cccccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChh-hHHHHHHHHHHHHhh
Q psy11289 4 ESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRN-SFEEIYKFHRQILRV 82 (159)
Q Consensus 4 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~ 82 (159)
.+.|...+.|++||.+......++.-+. .+ .++++..+.+.+++++|++++|+|+++|+ ++..+.+|+..+..
T Consensus 35 ~~~~~~~~~~~vGD~V~~~~~~~~~g~I---~~--i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~- 108 (302)
T 2yv5_A 35 RGKVLKKTKIYAGDYVWGEVVDPNTFAI---EE--VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY- 108 (302)
T ss_dssp CSSSTTSSCCCBTCEEEEEEEETTEEEE---EE--ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-
T ss_pred cCCcccCCCCcCceEEEEEEccCCeEEE---Ee--eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-
Confidence 3445444448888776544443333222 22 25677777778999999999999999986 89888999886654
Q ss_pred cCCCCCcEEEEEeCCCCCCcCCCC-HHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHH
Q psy11289 83 KDRDEFPMLMVGNKADLDHQRQVS-SMDAQNVARQLRIPYIECSAKVRINVDQAFHELV 140 (159)
Q Consensus 83 ~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 140 (159)
.++|+++|+||+|+.+...++ .++...+++..|++++++||++|.|++++++.+.
T Consensus 109 ---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 109 ---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp ---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred ---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 578999999999997543222 3445666777899999999999999999988764
No 142
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.68 E-value=3.7e-16 Score=118.29 Aligned_cols=114 Identities=17% Similarity=0.217 Sum_probs=87.3
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCC--H
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVS--S 107 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~--~ 107 (159)
..+.+|||||+++|...+..++..+|++++|+|++++.++.....|+..+... ...|+++++||+|+.+..... .
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~ 151 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQY 151 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHH
Confidence 57888999999999999999999999999999999987777777777655443 235899999999987533211 1
Q ss_pred HHHHHHHHHc---CCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 108 MDAQNVARQL---RIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 108 ~~~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
++..++.... +++++++||++|.|++++++.+.+.+...
T Consensus 152 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 152 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 1222222222 57899999999999999999999876543
No 143
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.68 E-value=1.4e-16 Score=117.99 Aligned_cols=134 Identities=18% Similarity=0.240 Sum_probs=98.3
Q ss_pred ccccccccceEEEEEEECCeeEEEEEEeCCCccc----chHHHHHHhh---cCCEEEEEEECCC---hhhHHHHHHHHHH
Q psy11289 9 TDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEE----FSAMREQYMR---SGEGFLLVFSVTD---RNSFEEIYKFHRQ 78 (159)
Q Consensus 9 ~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~~~---~~~~ii~v~d~~~---~~s~~~~~~~~~~ 78 (159)
.+|+.|+-......+.+++. ..+.+|||||... +..+...+++ .++++|+|+|+++ +++++.+..|+..
T Consensus 186 ~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~e 264 (342)
T 1lnz_A 186 ADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQE 264 (342)
T ss_dssp SSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHH
T ss_pred ccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHH
Confidence 44554444333334555541 2466799999643 3335555544 5999999999998 7889999999998
Q ss_pred HHhhcC-CCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcC--CcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 79 ILRVKD-RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLR--IPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 79 i~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
+..+.. ..++|+++|+||+|+...+ +....+++.++ ++++++||+++.|++++++++.+.+.+..
T Consensus 265 L~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 265 LSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTP 332 (342)
T ss_dssp HHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCC
T ss_pred HHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhhCc
Confidence 887642 2578999999999986422 34566777776 78999999999999999999999886543
No 144
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.65 E-value=8.2e-16 Score=112.25 Aligned_cols=125 Identities=16% Similarity=0.154 Sum_probs=86.4
Q ss_pred cccccccceEEEEEEECCeeEEEEEEeCCCccc--------chHHHHHHhhcCCEEEEEEECCChhhHHHHHHHH-HHHH
Q psy11289 10 DYDPTIEDSYTKQCVIDDIPARLDILDTAGQEE--------FSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFH-RQIL 80 (159)
Q Consensus 10 ~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~-~~i~ 80 (159)
..++|+.......+..++ ..+.||||||..+ +......+++++|++++|+|++++.+.. ..|+ ..+.
T Consensus 37 ~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~ 112 (301)
T 1wf3_A 37 PRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALK 112 (301)
T ss_dssp SSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHG
T ss_pred CCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHH
Confidence 445566555544444444 4566799999876 4456677889999999999999875443 3444 3444
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHc-C-CcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQL-R-IPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~-~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
+.. .+.|+++|+||+|+..... .....++.+ + .+++++||++|.|++++++.+.+.+.
T Consensus 113 ~~~--~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 113 PLV--GKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp GGT--TTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred hhc--CCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhcc
Confidence 432 4789999999999865322 022333333 3 46899999999999999999987653
No 145
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.65 E-value=3e-15 Score=113.47 Aligned_cols=109 Identities=19% Similarity=0.249 Sum_probs=76.7
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCC----hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCC-
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD----RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQ- 104 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~- 104 (159)
..+.||||||+++|...+...+..+|++|+|+|+++ +.+.+++..| .. . ...|+++++||+|+.+...
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~-l--~~~~iivv~NK~Dl~~~~~~ 153 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EI-L--GIDKIIIVQNKIDLVDEKQA 153 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HH-T--TCCCEEEEEECTTSSCTTTT
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HH-c--CCCeEEEEEEccCCCCHHHH
Confidence 678889999999988777677778899999999995 4555554422 12 1 2348999999999976443
Q ss_pred -CCHHHHHHHHHHc---CCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 105 -VSSMDAQNVARQL---RIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 105 -~~~~~~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
...++..++++.. +++++++||++|.|++++++++...+..
T Consensus 154 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 154 EENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp TTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 2345566666553 5789999999999999999999986653
No 146
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.64 E-value=4e-16 Score=119.77 Aligned_cols=129 Identities=23% Similarity=0.281 Sum_probs=85.6
Q ss_pred cccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHH--------HhhcCCEEEEEEECCChhhHHHHHHHHH
Q psy11289 6 YFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQ--------YMRSGEGFLLVFSVTDRNSFEEIYKFHR 77 (159)
Q Consensus 6 ~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~--------~~~~~~~ii~v~d~~~~~s~~~~~~~~~ 77 (159)
.++.++++|+.+.....+.++|.++ .+|||+|...+...++. +++.+|++++|+|++++.+... ..|+.
T Consensus 250 a~v~~~~gtT~d~~~~~i~~~g~~v--~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~ 326 (462)
T 3geh_A 250 AIVTDLPGTTRDVVESQLVVGGIPV--QVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYE 326 (462)
T ss_dssp SCCSCCTTCCHHHHHHEEEETTEEE--EECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHH
T ss_pred ccccCCCCeeEEEEEEEEEECCEEE--EEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHH
Confidence 3466677777676666777888775 55999998765544333 4688999999999999776654 34444
Q ss_pred HHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 78 QILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 78 ~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.+ ...|+++|+||+|+.....+. ....++ .+.+++++||++|.|++++++++.+.+....
T Consensus 327 ~l------~~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 327 QV------KHRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp HH------TTSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred hc------cCCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 44 336999999999997654433 111111 3568999999999999999999999886554
No 147
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.63 E-value=1.1e-15 Score=116.78 Aligned_cols=134 Identities=19% Similarity=0.140 Sum_probs=88.0
Q ss_pred ccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHH------------HHHHhhcCCEEEEEEECCChhhHHHHHH
Q psy11289 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAM------------REQYMRSGEGFLLVFSVTDRNSFEEIYK 74 (159)
Q Consensus 7 f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------------~~~~~~~~~~ii~v~d~~~~~s~~~~~~ 74 (159)
++.++++|+.+.....+.++|..+ .+|||+|..++... ...+++.+|++++++|+++..+..+. .
T Consensus 207 ~v~~~~gtT~d~~~~~i~~~g~~~--~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~ 283 (439)
T 1mky_A 207 LVSPIPGTTRDPVDDEVFIDGRKY--VFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-R 283 (439)
T ss_dssp EECCCC------CCEEEEETTEEE--EESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-H
T ss_pred ccCCCCCCcCCceEEEEEECCEEE--EEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-H
Confidence 356677777766677788898865 55999998543321 13467889999999999987666542 2
Q ss_pred HHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHH-HHHHH----cCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 75 FHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQ-NVARQ----LRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 75 ~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~~~~----~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
+...+.. .++|+++|+||+|+.+.+..+.++.. .+++. .+++++++||++|.|++++|+.+.+.+....
T Consensus 284 i~~~l~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 357 (439)
T 1mky_A 284 MAGLMER----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYT 357 (439)
T ss_dssp HHHHHHH----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH----cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 2222222 56899999999999765544443332 23333 2578999999999999999999998776544
No 148
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.61 E-value=7.9e-16 Score=117.56 Aligned_cols=126 Identities=14% Similarity=0.166 Sum_probs=78.6
Q ss_pred cccccccccceEEEEEEECCeeEEEEEEeCCCcc--------cchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHH
Q psy11289 8 VTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQE--------EFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQI 79 (159)
Q Consensus 8 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i 79 (159)
+.++++++.+.....+.+++.. +++|||||++ ++...+..+++++|++|+|+|++++.+..+ .|+..+
T Consensus 31 v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~ 106 (436)
T 2hjg_A 31 VEDTPGVTRDRIYSSAEWLNYD--FNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKI 106 (436)
T ss_dssp ----------CEEEECTTCSSC--CEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHH
T ss_pred ecCCCCCccceEEEEEEECCce--EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHH
Confidence 3445555555555555556655 5569999986 566778888999999999999998766543 333343
Q ss_pred HhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 80 LRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 80 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
.+ ..++|+++|+||+|+.+... +..++. .+|+ +++++||++|.|+.++++++.+.+.+
T Consensus 107 l~---~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 107 LY---RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp HT---TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGGG
T ss_pred HH---HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcCc
Confidence 33 25789999999999864321 111222 4565 68999999999999999999988754
No 149
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.60 E-value=9.6e-15 Score=110.77 Aligned_cols=109 Identities=16% Similarity=0.219 Sum_probs=80.6
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCC----hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCC-
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD----RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQ- 104 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~- 104 (159)
..+.||||||+++|.......+..+|++|+|+|+++ +.+.+++..| ... ...|+++++||+|+.+...
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~---~~~~iivviNK~Dl~~~~~~ 155 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QII---GQKNIIIAQNKIELVDKEKA 155 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHH---TCCCEEEEEECGGGSCHHHH
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHc---CCCcEEEEEECccCCCHHHH
Confidence 678889999999998777777888999999999995 4555554422 221 2358999999999875332
Q ss_pred -CCHHHHHHHHHH---cCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 105 -VSSMDAQNVARQ---LRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 105 -~~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
...++...+++. .+++++++||++|.|++++++++...+..
T Consensus 156 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 156 LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 112334445443 35789999999999999999999886653
No 150
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.60 E-value=1e-15 Score=104.99 Aligned_cols=109 Identities=7% Similarity=0.018 Sum_probs=71.1
Q ss_pred eCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHH---HHHhhc-CCCCCcEEEEEeCC-CCCCcCCCCHHHH
Q psy11289 36 DTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHR---QILRVK-DRDEFPMLMVGNKA-DLDHQRQVSSMDA 110 (159)
Q Consensus 36 D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~---~i~~~~-~~~~~p~ivv~nK~-D~~~~~~~~~~~~ 110 (159)
+.+|+++.+++|+.|++++|++|||+|.+|.+.++ +..-+. .++... ...++|++|++||. |++ ..++..+.
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI 184 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYL 184 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHH
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHH
Confidence 45689999999999999999999999999986544 333332 233322 13578999999995 764 45566554
Q ss_pred HHHHHH----cCCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 111 QNVARQ----LRIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 111 ~~~~~~----~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.+...- ..+.+..|||.+|+|+.+.++|+++.+..++
T Consensus 185 ~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 185 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred HHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 433211 1245899999999999999999998775443
No 151
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.59 E-value=1.5e-14 Score=111.67 Aligned_cols=113 Identities=15% Similarity=0.209 Sum_probs=84.9
Q ss_pred EEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q psy11289 23 CVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD---RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADL 99 (159)
Q Consensus 23 ~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 99 (159)
+..++. .+.+|||||+++|...+...+..+|++|+|+|+++ +.+.+.+. .+ .. .++|.++++||+|+
T Consensus 68 ~~~~~~--~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~-~~---~~ip~IvviNK~Dl 137 (482)
T 1wb1_A 68 FKLENY--RITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML----IL-DH---FNIPIIVVITKSDN 137 (482)
T ss_dssp EEETTE--EEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH----HH-HH---TTCCBCEEEECTTS
T ss_pred EEECCE--EEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHH----HH-HH---cCCCEEEEEECCCc
Confidence 344554 45669999999998888889999999999999988 55555543 22 22 35788999999998
Q ss_pred CCcCCC--CHHHHHHHHHHc----CCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 100 DHQRQV--SSMDAQNVARQL----RIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 100 ~~~~~~--~~~~~~~~~~~~----~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
.+.... ..++...+++.. +++++++||++|.|++++++++.+.+..
T Consensus 138 ~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 138 AGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNN 189 (482)
T ss_dssp SCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhcC
Confidence 753211 123444555555 5789999999999999999999998753
No 152
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.58 E-value=3.3e-16 Score=117.01 Aligned_cols=131 Identities=16% Similarity=0.231 Sum_probs=73.6
Q ss_pred ccccceE-EEEEEECCeeEEEEEEeCCCc-------ccchHHHH-------HHhhcCCEE-----------EEEEECCC-
Q psy11289 13 PTIEDSY-TKQCVIDDIPARLDILDTAGQ-------EEFSAMRE-------QYMRSGEGF-----------LLVFSVTD- 65 (159)
Q Consensus 13 pt~~~~~-~~~~~~~~~~~~~~l~D~~g~-------~~~~~~~~-------~~~~~~~~i-----------i~v~d~~~- 65 (159)
||++..+ ...+..++..+.+.+|||+|+ +++..++. .|+++++++ +++|++++
T Consensus 77 ~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~ 156 (361)
T 2qag_A 77 RTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF 156 (361)
T ss_dssp -CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS
T ss_pred CceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC
Confidence 5655333 444555677788999999999 77766666 777665544 35666654
Q ss_pred hhhHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCH--HHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 66 RNSFEEIY-KFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSS--MDAQNVARQLRIPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 66 ~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
..++..+. .|+..+ . .++|+|+|+||+|+...+.+.. +++..+++.++++++++||++|.| ++.|.++...
T Consensus 157 ~~~l~~~d~~~~~~l----~-~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~ 230 (361)
T 2qag_A 157 GHGLKPLDVAFMKAI----H-NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRL 230 (361)
T ss_dssp SSSCCHHHHHHHHHT----C-S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHH
T ss_pred CCCcchhHHHHHHHh----c-cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHH
Confidence 44555544 343332 2 5789999999999976554433 456667777889999999999999 9999999998
Q ss_pred HHhcccc
Q psy11289 143 VLLHTKQ 149 (159)
Q Consensus 143 ~~~~~~~ 149 (159)
+.+..+.
T Consensus 231 i~~~ip~ 237 (361)
T 2qag_A 231 LKASIPF 237 (361)
T ss_dssp HHHTCSC
T ss_pred HHhcCCC
Confidence 8776543
No 153
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.57 E-value=9.2e-14 Score=103.80 Aligned_cols=135 Identities=16% Similarity=0.109 Sum_probs=88.7
Q ss_pred ccccccccceEEEEEEECCeeEEEEEEeCCCccc---------chHHHHHHhhcCCEEEEEEECCChh--hHHHHHHHHH
Q psy11289 9 TDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEE---------FSAMREQYMRSGEGFLLVFSVTDRN--SFEEIYKFHR 77 (159)
Q Consensus 9 ~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~~~~~~ii~v~d~~~~~--s~~~~~~~~~ 77 (159)
.+++.++-+.....+.++|.. +.+|||+|..+ |.+.++ .+..+|++++|+|++++. +...+..|..
T Consensus 207 ~~~~~~T~d~~~~~i~~~g~~--v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~ 283 (364)
T 2qtf_A 207 DTKLFTTMSPKRYAIPINNRK--IMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFE 283 (364)
T ss_dssp -------CCSCEEEEEETTEE--EEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred cCCcccccCCEEEEEEECCEE--EEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHH
Confidence 344445545556778888865 46699999722 333332 468899999999999887 5666656655
Q ss_pred HHHhhcCCCCCcEEEEEeCCCCCCcCCCC-HHHHHHHHHHc---CCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 78 QILRVKDRDEFPMLMVGNKADLDHQRQVS-SMDAQNVARQL---RIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 78 ~i~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
.+... ...+.|+++|+||+|+....... .+.+..++..+ +.+++++||++|.|++++++.+.+.+....
T Consensus 284 ~L~~l-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 284 ILREI-GVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp HHHHH-TCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred HHHHh-CcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccC
Confidence 44443 33578999999999986432100 11233344555 246899999999999999999998776544
No 154
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.56 E-value=1.8e-14 Score=107.83 Aligned_cols=109 Identities=6% Similarity=-0.034 Sum_probs=80.0
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEEe-CCCCCCcCCCCH
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM-LMVGN-KADLDHQRQVSS 107 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~n-K~D~~~~~~~~~ 107 (159)
.++.+|||||+++|.......++.+|++|+|+| ++ ..+....+|+..+.. .++|. ++++| |+|+ +.+.+..
T Consensus 60 ~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~ 132 (370)
T 2elf_A 60 RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDE 132 (370)
T ss_dssp SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHH
T ss_pred eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHH
Confidence 347779999999998878888899999999999 43 344455555555443 35676 88888 9998 4332221
Q ss_pred --HHHHHHHHHcC---CcEEE--eCCCC---CCCHHHHHHHHHHHHHh
Q psy11289 108 --MDAQNVARQLR---IPYIE--CSAKV---RINVDQAFHELVRIVLL 145 (159)
Q Consensus 108 --~~~~~~~~~~~---~~~~~--~sa~~---~~~i~~~~~~l~~~~~~ 145 (159)
++...+++..+ +++++ +||++ +.|++++++.+.+.+..
T Consensus 133 ~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 133 LKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp HHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 34445554443 68999 99999 99999999999987654
No 155
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.56 E-value=4.3e-14 Score=109.24 Aligned_cols=106 Identities=14% Similarity=0.069 Sum_probs=70.6
Q ss_pred CeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHH-----HHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q psy11289 27 DIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEE-----IYKFHRQILRVKDRDEFPMLMVGNKADLDH 101 (159)
Q Consensus 27 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~-----~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 101 (159)
.....+.||||||+++|...+..+++.+|++|+|+|++++.++.. ...+...+.... ...|+++|+||+|+.+
T Consensus 108 ~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 108 THRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVD 185 (483)
T ss_dssp CSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGT
T ss_pred cCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCccc
Confidence 334567779999999999999999999999999999999754322 112222222222 2347999999999976
Q ss_pred cCCCCHHHH----HHHHHHcC-----CcEEEeCCCCCCCHHH
Q psy11289 102 QRQVSSMDA----QNVARQLR-----IPYIECSAKVRINVDQ 134 (159)
Q Consensus 102 ~~~~~~~~~----~~~~~~~~-----~~~~~~sa~~~~~i~~ 134 (159)
.+....++. ..+.+.++ ++++++||++|.|+.+
T Consensus 186 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 186 WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred chHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 333323333 33333443 5799999999999875
No 156
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.56 E-value=5e-14 Score=109.76 Aligned_cols=74 Identities=20% Similarity=0.237 Sum_probs=57.8
Q ss_pred EEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 21 KQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 21 ~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
..+..++ +.++||||||+.+|...+..+++.+|++|+|+|+++..+.....-| ..+.. .++|+++++||+|+.
T Consensus 75 ~~~~~~~--~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~----~~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 75 MQFPYKD--YLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL----RHTPIMTFINKMDRD 147 (528)
T ss_dssp EEEEETT--EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT----TTCCEEEEEECTTSC
T ss_pred EEEEeCC--EEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEeCCCCc
Confidence 3344455 4566799999999999999999999999999999997777665544 33322 468999999999985
Q ss_pred C
Q psy11289 101 H 101 (159)
Q Consensus 101 ~ 101 (159)
.
T Consensus 148 ~ 148 (528)
T 3tr5_A 148 T 148 (528)
T ss_dssp C
T ss_pred c
Confidence 4
No 157
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.55 E-value=8.6e-15 Score=110.87 Aligned_cols=115 Identities=15% Similarity=0.208 Sum_probs=82.0
Q ss_pred EECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCc
Q psy11289 24 VIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFP-MLMVGNKADLDHQ 102 (159)
Q Consensus 24 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~ 102 (159)
.++.....+.||||||+++|...+..+++.+|++|+|+|+++.... ...+|+..+.. .++| +++++||+|+.+.
T Consensus 69 ~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~----~~ip~iivviNK~Dl~~~ 143 (405)
T 2c78_A 69 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFMNKVDMVDD 143 (405)
T ss_dssp EEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCCC
T ss_pred EeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEECccccCc
Confidence 3333344567799999999988888899999999999999886543 33455554443 3577 8899999998742
Q ss_pred CC-C--CHHHHHHHHHHcC-----CcEEEeCCCCCCC------------------HHHHHHHHHHHH
Q psy11289 103 RQ-V--SSMDAQNVARQLR-----IPYIECSAKVRIN------------------VDQAFHELVRIV 143 (159)
Q Consensus 103 ~~-~--~~~~~~~~~~~~~-----~~~~~~sa~~~~~------------------i~~~~~~l~~~~ 143 (159)
.. . ..++...+++.++ ++++++||++|.| +.++++.+...+
T Consensus 144 ~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 144 PELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 11 1 1234556666665 6799999999987 666666666544
No 158
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.55 E-value=4e-14 Score=108.20 Aligned_cols=112 Identities=15% Similarity=0.172 Sum_probs=75.6
Q ss_pred EEEEEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhh---HH---HHHHHHHHHHhhcCCCCCc-EEE
Q psy11289 20 TKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNS---FE---EIYKFHRQILRVKDRDEFP-MLM 92 (159)
Q Consensus 20 ~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-~iv 92 (159)
...+..++. .+.||||||+++|...+...++.+|++|+|+|+++... |. ...+.+..+.. .++| +++
T Consensus 87 ~~~~~~~~~--~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIv 160 (439)
T 3j2k_7 87 RAYFETEKK--HFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIV 160 (439)
T ss_pred EEEEecCCe--EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEE
Confidence 334444555 56669999999999988899999999999999998532 11 11111122211 3566 999
Q ss_pred EEeCCCCCCcC------CCCHHHHHHHHHHcC------CcEEEeCCCCCCCHHHHHH
Q psy11289 93 VGNKADLDHQR------QVSSMDAQNVARQLR------IPYIECSAKVRINVDQAFH 137 (159)
Q Consensus 93 v~nK~D~~~~~------~~~~~~~~~~~~~~~------~~~~~~sa~~~~~i~~~~~ 137 (159)
++||+|+.... ....++...+++.+| ++++++||++|.|+.++.+
T Consensus 161 viNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 161 LINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred EeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 99999985321 011233445555555 4699999999999999765
No 159
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.55 E-value=2e-15 Score=115.36 Aligned_cols=109 Identities=15% Similarity=0.142 Sum_probs=78.2
Q ss_pred eeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc---CCCC-CcEEEEEeCCCCCCcC
Q psy11289 28 IPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK---DRDE-FPMLMVGNKADLDHQR 103 (159)
Q Consensus 28 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~-~p~ivv~nK~D~~~~~ 103 (159)
...++.||||||+++|...+..+++.+|++|+|+|+++ .+|+.+..|..+..+.. ...+ .|+++++||+|+.+..
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 34557779999999999889999999999999999998 67775443322222211 1123 3689999999986521
Q ss_pred ------CCCHHHHHHHHHHcC-----CcEEEeCCCCCCCHHHHHH
Q psy11289 104 ------QVSSMDAQNVARQLR-----IPYIECSAKVRINVDQAFH 137 (159)
Q Consensus 104 ------~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~~ 137 (159)
....++...+++.++ ++++++||++|.|+.++++
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 111345666777766 6799999999999986554
No 160
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.55 E-value=3.8e-14 Score=111.72 Aligned_cols=107 Identities=18% Similarity=0.221 Sum_probs=78.9
Q ss_pred EEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCC-
Q psy11289 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD---RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVS- 106 (159)
Q Consensus 31 ~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~- 106 (159)
.++||||||+++|..++..+++.+|++|+|+|+++ +.+++.+.. +.. .++|+++++||+|+.......
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~----~~vPiIVViNKiDl~~~~~~~~ 142 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM----YRTPFVVAANKIDRIHGWRVHE 142 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH----TTCCEEEEEECGGGSTTCCCCT
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH----cCCeEEEEeccccccccccccc
Confidence 47889999999998888888899999999999999 777765532 222 568999999999986422110
Q ss_pred ------------HH----------HHHHHHHHcC---------------CcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 107 ------------SM----------DAQNVARQLR---------------IPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 107 ------------~~----------~~~~~~~~~~---------------~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
.. +......+.+ ++++++||++|.|++++++++...+..
T Consensus 143 ~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 143 GRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp TCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 00 1111112222 379999999999999999999987753
No 161
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.53 E-value=2.1e-14 Score=108.45 Aligned_cols=113 Identities=13% Similarity=0.132 Sum_probs=80.8
Q ss_pred CeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCcCC-
Q psy11289 27 DIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFP-MLMVGNKADLDHQRQ- 104 (159)
Q Consensus 27 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~- 104 (159)
.....+.||||||+++|...+..+++.+|++|+|+|+++....+... ++..+.. .++| +++++||+|+.+...
T Consensus 63 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e-~l~~~~~----~~vp~iivviNK~Dl~~~~~~ 137 (397)
T 1d2e_A 63 TAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTRE-HLLLARQ----IGVEHVVVYVNKADAVQDSEM 137 (397)
T ss_dssp CSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHH-HHHHHHH----TTCCCEEEEEECGGGCSCHHH
T ss_pred cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCeEEEEEECcccCCCHHH
Confidence 33445677999999999888888899999999999999854333222 2233322 3578 789999999874211
Q ss_pred --CCHHHHHHHHHHcC-----CcEEEeCCCCCCC----------HHHHHHHHHHHHH
Q psy11289 105 --VSSMDAQNVARQLR-----IPYIECSAKVRIN----------VDQAFHELVRIVL 144 (159)
Q Consensus 105 --~~~~~~~~~~~~~~-----~~~~~~sa~~~~~----------i~~~~~~l~~~~~ 144 (159)
...++..++++.++ ++++++||++|.| +.++++.+.+.+.
T Consensus 138 ~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 138 VELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 11235566777766 5899999999764 8888888877654
No 162
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.53 E-value=3.4e-14 Score=108.48 Aligned_cols=104 Identities=14% Similarity=0.100 Sum_probs=74.9
Q ss_pred eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCC--C-
Q psy11289 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQ--V- 105 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~--~- 105 (159)
..++.||||||+++|...+..+++.+|++|+|+|+++.... ....++..+... .-.|+++|+||+|+.+... +
T Consensus 103 ~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~~ 178 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL---GIKHIVVAINKMDLNGFDERVFE 178 (434)
T ss_dssp SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHHH
T ss_pred CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHHHH
Confidence 34577799999999988888899999999999999986432 223343333221 2236899999999865221 1
Q ss_pred -CHHHHHHHHHHcC-----CcEEEeCCCCCCCHHHHH
Q psy11289 106 -SSMDAQNVARQLR-----IPYIECSAKVRINVDQAF 136 (159)
Q Consensus 106 -~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~ 136 (159)
..++...+++.++ ++++++||++|.|+.+++
T Consensus 179 ~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 179 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred HHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 1234556677777 679999999999998853
No 163
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.52 E-value=1e-14 Score=105.03 Aligned_cols=135 Identities=12% Similarity=0.149 Sum_probs=71.6
Q ss_pred cccccccc-------cccccceE-EEEEEECCeeEEEEEEeCCCc-------ccchHHH-------HHHhhc--------
Q psy11289 4 ESYFVTDY-------DPTIEDSY-TKQCVIDDIPARLDILDTAGQ-------EEFSAMR-------EQYMRS-------- 53 (159)
Q Consensus 4 ~~~f~~~~-------~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~-------~~~~~~~-------~~~~~~-------- 53 (159)
.+.|..++ .||++..+ ...+..+|..+.+.+|||||. +.+..+. ..|++.
T Consensus 31 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~ 110 (274)
T 3t5d_A 31 TDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQ 110 (274)
T ss_dssp SCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCS
T ss_pred CCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhccccccc
Confidence 34555555 67777443 555556777788999999998 2344444 555554
Q ss_pred -----CCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCC--HHHHHHHHHHcCCcEEEeCC
Q psy11289 54 -----GEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVS--SMDAQNVARQLRIPYIECSA 126 (159)
Q Consensus 54 -----~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~sa 126 (159)
+|+++++++.+...-...-..++..+.. ++|+++|+||+|+.....+. .+...+.....+++++++||
T Consensus 111 ~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa 185 (274)
T 3t5d_A 111 MPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPE 185 (274)
T ss_dssp CCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-----TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC--
T ss_pred ccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-----cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCC
Confidence 7899999977652211111233333322 68999999999986432221 12234445567899999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy11289 127 KVRINVDQAFHELVRIV 143 (159)
Q Consensus 127 ~~~~~i~~~~~~l~~~~ 143 (159)
.++.|+.++++++.+.+
T Consensus 186 ~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 186 TDDEEENKLVKKIKDRL 202 (274)
T ss_dssp ---------CHHHHHTC
T ss_pred CCChhHHHHHHHHhcCC
Confidence 99999999999988754
No 164
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.52 E-value=3.4e-14 Score=101.87 Aligned_cols=108 Identities=7% Similarity=0.015 Sum_probs=75.2
Q ss_pred eCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHH---HHHhhc-CCCCCcEEEEEeC-CCCCCcCCCCHHHH
Q psy11289 36 DTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHR---QILRVK-DRDEFPMLMVGNK-ADLDHQRQVSSMDA 110 (159)
Q Consensus 36 D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~---~i~~~~-~~~~~p~ivv~nK-~D~~~~~~~~~~~~ 110 (159)
|.+||++.+++|+.|++++|++|||+|.+|.+.++ ...-+. .+.... ...+.|++|++|| .|++ ..++..+.
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp--~Ams~~EI 269 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYL 269 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS--CBCCHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc--CCCCHHHH
Confidence 35799999999999999999999999999987654 332222 333222 1367899999996 6875 45555544
Q ss_pred HHHHHH----cCCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 111 QNVARQ----LRIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 111 ~~~~~~----~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
.+...- ..+.+..|||.+|+|+.+.++|+++.+..+
T Consensus 270 ~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 270 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred HHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 332211 124489999999999999999999887543
No 165
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.50 E-value=4.4e-14 Score=103.09 Aligned_cols=126 Identities=17% Similarity=0.119 Sum_probs=82.8
Q ss_pred ccccccceEEEEEEECCeeEEEEEEeCCCcc-cchH-H-------HHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 11 YDPTIEDSYTKQCVIDDIPARLDILDTAGQE-EFSA-M-------REQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 11 ~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~-~~~~-~-------~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
.++|+.......+..++. .+.+|||||+. +... + ...+++.+|++++|+|+++ +.....|+.....
T Consensus 39 ~~~tTr~~~~gi~~~~~~--~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~ 113 (301)
T 1ega_A 39 KAQTTRHRIVGIHTEGAY--QAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLR 113 (301)
T ss_dssp CSSCCSSCEEEEEEETTE--EEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHH
T ss_pred CCCcceeeEEEEEEECCe--eEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH
Confidence 344555444444455554 45669999997 3321 1 2344678999999999977 2233334433332
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
..+.|+++++||+|+...+....+....+++.+++ .++++||++|.|++++++.+...+.
T Consensus 114 ---~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 114 ---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp ---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred ---hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 14689999999999865222112344555556676 5999999999999999999987653
No 166
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.50 E-value=2.1e-13 Score=97.26 Aligned_cols=135 Identities=10% Similarity=0.050 Sum_probs=85.4
Q ss_pred cccccccc--ccceEEEEEEECCeeEEEEEEeCCCcccch-----------HHHHHHhhcCCEEEEEEECCChhhH-HHH
Q psy11289 7 FVTDYDPT--IEDSYTKQCVIDDIPARLDILDTAGQEEFS-----------AMREQYMRSGEGFLLVFSVTDRNSF-EEI 72 (159)
Q Consensus 7 f~~~~~pt--~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-----------~~~~~~~~~~~~ii~v~d~~~~~s~-~~~ 72 (159)
|...+.|+ +.......+..++.. +.||||||+..+. .....+++++|++++|+|+++.... ..+
T Consensus 48 ~~~~~~~~~~t~~~~~~~~~~~~~~--i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~ 125 (260)
T 2xtp_A 48 FESKLGSQTLTKTCSKSQGSWGNRE--IVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQA 125 (260)
T ss_dssp SCCCTTSCCCCCSCEEEEEEETTEE--EEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHH
T ss_pred cccCCCCCceeeeeEEEEEEeCCCE--EEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHH
Confidence 55555554 334455666777766 4559999987642 1223467889999999999863322 223
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEe-CCCCCCcCCCCH-------HHHHHHHHHcCCc---E--EEeCCCCCCCHHHHHHHH
Q psy11289 73 YKFHRQILRVKDRDEFPMLMVGN-KADLDHQRQVSS-------MDAQNVARQLRIP---Y--IECSAKVRINVDQAFHEL 139 (159)
Q Consensus 73 ~~~~~~i~~~~~~~~~p~ivv~n-K~D~~~~~~~~~-------~~~~~~~~~~~~~---~--~~~sa~~~~~i~~~~~~l 139 (159)
..|+..+.... ...|+++++| |+|+.+. .+.. .+...++...+.. + +++||++|.|++++|+++
T Consensus 126 ~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i 202 (260)
T 2xtp_A 126 AQRVKEIFGED--AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCI 202 (260)
T ss_dssp HHHHHHHHCGG--GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCch--hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHH
Confidence 34443332211 1456666666 9998743 2211 2344466666543 2 789999999999999999
Q ss_pred HHHHHhc
Q psy11289 140 VRIVLLH 146 (159)
Q Consensus 140 ~~~~~~~ 146 (159)
...+...
T Consensus 203 ~~~~~~~ 209 (260)
T 2xtp_A 203 EDLLMEK 209 (260)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 9988653
No 167
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.49 E-value=5.5e-16 Score=120.62 Aligned_cols=133 Identities=15% Similarity=0.155 Sum_probs=88.2
Q ss_pred ccccccccccceE-EEEEEE-CCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcC
Q psy11289 7 FVTDYDPTIEDSY-TKQCVI-DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD 84 (159)
Q Consensus 7 f~~~~~pt~~~~~-~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~ 84 (159)
+...+.|++...+ ...+.. ++.. +.||||||+++|..++..+++.+|++++|+|+++....+....| ..+..
T Consensus 29 ~~~~~~~giT~~i~~~~v~~~~g~~--i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l-~~~~~--- 102 (537)
T 3izy_P 29 VAAMEAGGITQHIGAFLVSLPSGEK--ITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESI-QHAKD--- 102 (537)
T ss_dssp HHHSSSCCBCCCTTSCCBCSSCSSC--CBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHH-HHHHT---
T ss_pred cccccCCceeEEEeEEEEEeCCCCE--EEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHH-HHHHH---
Confidence 3344455554332 333333 3444 55699999999999888999999999999999986554443322 22222
Q ss_pred CCCCcEEEEEeCCCCCCcCCCC-HHHHHHH---HHHc--CCcEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy11289 85 RDEFPMLMVGNKADLDHQRQVS-SMDAQNV---ARQL--RIPYIECSAKVRINVDQAFHELVRIVLLH 146 (159)
Q Consensus 85 ~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 146 (159)
.++|+++++||+|+.+..... ..+...+ +..+ .++++++||++|.|++++++++..++...
T Consensus 103 -~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~ 169 (537)
T 3izy_P 103 -AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEML 169 (537)
T ss_dssp -TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTC
T ss_pred -cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhhcc
Confidence 568999999999986432211 1111111 1112 25799999999999999999999877543
No 168
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.7e-14 Score=98.29 Aligned_cols=78 Identities=18% Similarity=0.353 Sum_probs=63.8
Q ss_pred eeEEEEEEeCCCcccchHHHHHHhhc----CCEEEEEEECC-ChhhHHHHHHHHHHHHhhcC---CCCCcEEEEEeCCCC
Q psy11289 28 IPARLDILDTAGQEEFSAMREQYMRS----GEGFLLVFSVT-DRNSFEEIYKFHRQILRVKD---RDEFPMLMVGNKADL 99 (159)
Q Consensus 28 ~~~~~~l~D~~g~~~~~~~~~~~~~~----~~~ii~v~d~~-~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~D~ 99 (159)
..+.+.+|||||++.+...+..++++ +|++++|||++ +++++..+..|+..+..... ..+.|+++|+||+|+
T Consensus 89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 168 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 168 (193)
T ss_dssp CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHh
Confidence 34556779999999988778888766 89999999999 89999999999888776532 257899999999999
Q ss_pred CCcCCC
Q psy11289 100 DHQRQV 105 (159)
Q Consensus 100 ~~~~~~ 105 (159)
.+...+
T Consensus 169 ~~~~~~ 174 (193)
T 2ged_A 169 FTARPP 174 (193)
T ss_dssp TTCCCH
T ss_pred cCCCCH
Confidence 765543
No 169
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.48 E-value=1.2e-12 Score=92.25 Aligned_cols=127 Identities=17% Similarity=0.122 Sum_probs=82.0
Q ss_pred ceEEEEEEECCeeEEEEEEeCCCcc-----------cchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcC-
Q psy11289 17 DSYTKQCVIDDIPARLDILDTAGQE-----------EFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD- 84 (159)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~D~~g~~-----------~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~- 84 (159)
......+.+++..+ .||||||.. .+......+++++|++|+|+|+++..... ..|+..+.....
T Consensus 67 ~~~~~~~~~~~~~i--~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~--~~~l~~~~~~~~~ 142 (239)
T 3lxx_A 67 KCEKRSSSWKETEL--VVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEE--HKATEKILKMFGE 142 (239)
T ss_dssp SCEEEEEEETTEEE--EEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHH--HHHHHHHHHHHHH
T ss_pred eEEEEEEEeCCceE--EEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHH--HHHHHHHHHHhhh
Confidence 44466677788765 559999953 33444455567889999999997644321 223333322111
Q ss_pred CCCCcEEEEEeCCCCCCcCCCC------HHHHHHHHHHcCCcEEEeCCCCC-----CCHHHHHHHHHHHHHhcc
Q psy11289 85 RDEFPMLMVGNKADLDHQRQVS------SMDAQNVARQLRIPYIECSAKVR-----INVDQAFHELVRIVLLHT 147 (159)
Q Consensus 85 ~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~~~~~sa~~~-----~~i~~~~~~l~~~~~~~~ 147 (159)
....|+++|+||+|+.+...+. .+....+++..+..++.++...+ .++.++|+.+...+.+..
T Consensus 143 ~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~ 216 (239)
T 3lxx_A 143 RARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENK 216 (239)
T ss_dssp HHGGGEEEEEECGGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 1245999999999986554443 23567788888988888887754 689999998888776543
No 170
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.47 E-value=1.3e-14 Score=111.76 Aligned_cols=110 Identities=17% Similarity=0.189 Sum_probs=65.5
Q ss_pred EECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCC
Q psy11289 24 VIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR---NSFEEIYKFHRQILRVKDRDEFP-MLMVGNKADL 99 (159)
Q Consensus 24 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~ 99 (159)
..++. ++.||||||+++|...+...++.+|++|+|+|+++. .+|+....|...+.... ..++| +++++||+|+
T Consensus 117 ~~~~~--~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~~~vp~iivviNK~Dl 193 (467)
T 1r5b_A 117 ETEHR--RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQGINHLVVVINKMDE 193 (467)
T ss_dssp ECSSE--EEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HTTCSSEEEEEECTTS
T ss_pred ecCCe--EEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-HcCCCEEEEEEECccC
Confidence 33444 566799999999988888889999999999999985 33432222222222111 14567 9999999998
Q ss_pred CCcC------CCCHHHHHHHHHHc-C------CcEEEeCCCCCCCHHHHH
Q psy11289 100 DHQR------QVSSMDAQNVARQL-R------IPYIECSAKVRINVDQAF 136 (159)
Q Consensus 100 ~~~~------~~~~~~~~~~~~~~-~------~~~~~~sa~~~~~i~~~~ 136 (159)
.... ....++...+++.+ | ++++++||++|.|+.+++
T Consensus 194 ~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 194 PSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 5421 01123456666666 4 569999999999998765
No 171
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.46 E-value=8.6e-14 Score=115.47 Aligned_cols=115 Identities=16% Similarity=0.143 Sum_probs=82.5
Q ss_pred ECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCcC
Q psy11289 25 IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFP-MLMVGNKADLDHQR 103 (159)
Q Consensus 25 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~ 103 (159)
++.....+.||||||+++|...+..+++.+|++|+|+|+++....+ ..+++..+.. .++| +|+++||+|+.+..
T Consensus 354 f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~----lgIP~IIVVINKiDLv~d~ 428 (1289)
T 3avx_A 354 YDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQ----VGVPYIIVFLNKCDMVDDE 428 (1289)
T ss_dssp EECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHH----HTCSCEEEEEECCTTCCCH
T ss_pred EcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHH----cCCCeEEEEEeecccccch
Confidence 3344456778999999999888888899999999999999864322 2334444333 3567 78999999987522
Q ss_pred CC---CHHHHHHHHHHcC-----CcEEEeCCCCC--------CCHHHHHHHHHHHHH
Q psy11289 104 QV---SSMDAQNVARQLR-----IPYIECSAKVR--------INVDQAFHELVRIVL 144 (159)
Q Consensus 104 ~~---~~~~~~~~~~~~~-----~~~~~~sa~~~--------~~i~~~~~~l~~~~~ 144 (159)
.. ..++...+++.++ ++++++||++| .|+.++++.+...+.
T Consensus 429 e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 429 ELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred hhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 11 1245566777766 68999999999 458888888776553
No 172
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.45 E-value=9.8e-13 Score=105.15 Aligned_cols=68 Identities=18% Similarity=0.172 Sum_probs=53.6
Q ss_pred eeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 28 IPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 28 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
..+.++||||||+.+|...+..+++.+|++++|+|+++.-.... ..++..+.. .++|+++++||+|+.
T Consensus 72 ~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 72 RGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp TTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred CCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH----ccCCEEEEecCCchh
Confidence 35667889999999999889999999999999999987544332 244444433 468999999999986
No 173
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.45 E-value=1.1e-13 Score=106.35 Aligned_cols=103 Identities=12% Similarity=0.141 Sum_probs=72.5
Q ss_pred eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChh---hHH---HHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCC
Q psy11289 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRN---SFE---EIYKFHRQILRVKDRDEFP-MLMVGNKADLDH 101 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~ 101 (159)
...+.||||||+++|...+..+++.+|++|+|+|+++.. +|+ ...+.+..... .++| +++++||+|+.+
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGT
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEcccccc
Confidence 345777999999999988889999999999999999753 331 22222222222 3455 899999999863
Q ss_pred cCC----CCHHHHHHHHHHcC-----CcEEEeCCCCCCCHHHH
Q psy11289 102 QRQ----VSSMDAQNVARQLR-----IPYIECSAKVRINVDQA 135 (159)
Q Consensus 102 ~~~----~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~ 135 (159)
... ...++...+++.++ ++++++||++|.|+.++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 111 11234556666666 68999999999998754
No 174
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.45 E-value=1.9e-13 Score=105.01 Aligned_cols=124 Identities=13% Similarity=0.121 Sum_probs=76.4
Q ss_pred cccccccceEEEEEEECCeeEEEEEEeCCC--------cccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 10 DYDPTIEDSYTKQCVIDDIPARLDILDTAG--------QEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 10 ~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g--------~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
++++++.+.....+..++. .+++||||| ++++...+..+++++|++|+|+|..+..+.. ..|+..+.+
T Consensus 53 ~~~g~t~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~--d~~l~~~l~ 128 (456)
T 4dcu_A 53 DTPGVTRDRIYSSAEWLNY--DFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA--DEEVAKILY 128 (456)
T ss_dssp --------CEEEECTTCSS--CCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH--HHHHHHHHT
T ss_pred CCCCcceeEEEEEEEECCc--eEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH--HHHHHHHHH
Confidence 3344444443333333444 456699999 7777788889999999999999987743322 233333333
Q ss_pred hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCC-cEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 82 VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRI-PYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 82 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
. .++|+++|+||+|+.+.. ....++. .+++ ..+++||++|.|+.++++.+...+..
T Consensus 129 ~---~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 129 R---TKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp T---CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred H---cCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeecccccchHHHHHHHHhhccc
Confidence 2 578999999999975421 1111111 2343 47899999999999999999886643
No 175
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.43 E-value=6.7e-14 Score=110.78 Aligned_cols=106 Identities=14% Similarity=0.116 Sum_probs=69.8
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChh---hHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCC
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRN---SFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVS 106 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~ 106 (159)
..+.||||||+++|...+..+++.+|++|+|+|+++.. ++.....+...+.........|+|+|+||+|+.+.....
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~ 324 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 324 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHH
Confidence 45677999999999988888899999999999998742 110011111111111111224599999999987532222
Q ss_pred H----HHHHHHHHHcC-----CcEEEeCCCCCCCHHHH
Q psy11289 107 S----MDAQNVARQLR-----IPYIECSAKVRINVDQA 135 (159)
Q Consensus 107 ~----~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~ 135 (159)
. ++...++..+| ++++++||++|.|+.++
T Consensus 325 ~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 325 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 2 23334444444 57999999999999876
No 176
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.40 E-value=7.1e-15 Score=113.57 Aligned_cols=109 Identities=19% Similarity=0.306 Sum_probs=76.9
Q ss_pred EECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 24 VIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD---RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 24 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
..++.. +.||||||++.|..++...++.+|++++|+|+++ +.+.+.+. .... .++|+++++||+|+.
T Consensus 47 ~~~~~~--i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~----~~~~----~~vPiIVviNKiDl~ 116 (501)
T 1zo1_I 47 ETENGM--ITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQ----HAKA----AQVPVVVAVNKIDKP 116 (501)
T ss_dssp CTTSSC--CCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHH----HHHH----TTCCEEEEEECSSSS
T ss_pred EECCEE--EEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHH----HHHh----cCceEEEEEEecccc
Confidence 345554 5569999999998888888899999999999988 45554432 2222 468999999999986
Q ss_pred Cc--CCCCHH--HHHHHHHHcC--CcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 101 HQ--RQVSSM--DAQNVARQLR--IPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 101 ~~--~~~~~~--~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
+. ..+..+ +...++..++ ++++++||++|.|++++|+++...
T Consensus 117 ~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 117 EADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp TTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred ccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 42 111110 0001122233 689999999999999999998754
No 177
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.37 E-value=2.4e-13 Score=98.63 Aligned_cols=110 Identities=15% Similarity=0.065 Sum_probs=74.1
Q ss_pred EEEEEEeCCCcc-------------cchHHHHHHhhcCCEEE-EEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEe
Q psy11289 30 ARLDILDTAGQE-------------EFSAMREQYMRSGEGFL-LVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGN 95 (159)
Q Consensus 30 ~~~~l~D~~g~~-------------~~~~~~~~~~~~~~~ii-~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~n 95 (159)
..+.||||||.. .+..++..+++.++.++ +|+|+++..+......|+..+. ..+.|+++|+|
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~----~~~~~~i~V~N 200 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVIT 200 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC----TTCSSEEEEEE
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC----CCCCeEEEEEE
Confidence 456779999964 34567788888888777 7999987654444333444332 25689999999
Q ss_pred CCCCCCcCCCCHHHHHHHHHH--cC-CcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 96 KADLDHQRQVSSMDAQNVARQ--LR-IPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 96 K~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
|+|+.+......+........ .+ .+++++||++|.|++++++++....
T Consensus 201 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 201 KLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp CGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred ccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 999976444223222110001 12 3578999999999999999988743
No 178
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.37 E-value=1.1e-11 Score=87.88 Aligned_cols=132 Identities=13% Similarity=0.111 Sum_probs=83.4
Q ss_pred cccceEEEEEEECCeeEEEEEEeCCCc--------ccchHHHHHHh----hcCCEEEEEEECCChhhH-HHHHHHHHHHH
Q psy11289 14 TIEDSYTKQCVIDDIPARLDILDTAGQ--------EEFSAMREQYM----RSGEGFLLVFSVTDRNSF-EEIYKFHRQIL 80 (159)
Q Consensus 14 t~~~~~~~~~~~~~~~~~~~l~D~~g~--------~~~~~~~~~~~----~~~~~ii~v~d~~~~~s~-~~~~~~~~~i~ 80 (159)
++..........++..+ .||||||. +.+......++ +++|++|+|+|+++.... ..+..|+..+.
T Consensus 56 ~T~~~~~~~~~~~~~~i--~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~ 133 (247)
T 3lxw_A 56 VTRACTTGSRRWDKCHV--EVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMF 133 (247)
T ss_dssp -CCSCEEEEEEETTEEE--EEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHH
T ss_pred ccccEEEEEEEECCcEE--EEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 33344455566677765 45999997 33333333333 899999999999863222 22223333332
Q ss_pred hhcCCCCCcEEEEEeCCCCCCcCCC------CHHHHHHHHHHcCCcEEEeCCCC-----CCCHHHHHHHHHHHHHhccc
Q psy11289 81 RVKDRDEFPMLMVGNKADLDHQRQV------SSMDAQNVARQLRIPYIECSAKV-----RINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 81 ~~~~~~~~p~ivv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~~~~sa~~-----~~~i~~~~~~l~~~~~~~~~ 148 (159)
... ..+.|+++++||.|+.+.... ..+....+.+..|..++.+++.. +.|+.++++.+.+.+.+..+
T Consensus 134 ~~~-~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~ 211 (247)
T 3lxw_A 134 GED-VLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKG 211 (247)
T ss_dssp CGG-GGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred Chh-hhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCC
Confidence 211 126799999999998653210 11345677777888888777665 57999999999888876543
No 179
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.36 E-value=8.9e-12 Score=97.19 Aligned_cols=67 Identities=25% Similarity=0.369 Sum_probs=51.5
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDH 101 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 101 (159)
+.++||||||+.+|...+..+++.+|++|+|+|+++...... ..+.......++|+++++||+|+..
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-----~~~~~~~~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 82 CLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-----RKLMEVTRLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-----HHHHHHHTTTTCCEEEEEECTTSCC
T ss_pred eEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-----HHHHHHHHHcCCCEEEEEcCcCCcc
Confidence 456779999999999888899999999999999988643221 2222333335789999999999854
No 180
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.33 E-value=3.3e-11 Score=91.33 Aligned_cols=135 Identities=13% Similarity=0.106 Sum_probs=90.7
Q ss_pred cccccccceEEEEEEECCeeEEEEEEeCCCcccc----hHHHH---HHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 10 DYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEF----SAMRE---QYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 10 ~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~~~---~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
+++.|+-......+..++ ...+.+||++|.... ..+.. ...+.++.++.++|++ ..++.++..|.+++..+
T Consensus 186 ~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~l 263 (416)
T 1udx_A 186 PYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAY 263 (416)
T ss_dssp CCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHH
T ss_pred CcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHH
Confidence 344443333233445554 234566999998432 11212 2245799999999998 66677777777776665
Q ss_pred cC-CCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 83 KD-RDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 83 ~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
.. ....|.++++||+|+... ...+.....++..+++++.+||+++.|++++++++.+.+.+...
T Consensus 264 a~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 264 DPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp CHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred hHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhccc
Confidence 31 135799999999998653 12333444555567899999999999999999999999876553
No 181
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.31 E-value=2.3e-11 Score=97.60 Aligned_cols=67 Identities=24% Similarity=0.371 Sum_probs=55.7
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDH 101 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 101 (159)
+.++||||||+.+|...+..+++.+|++|+|+|+++..+......|.. +.. .++|+++++||+|+..
T Consensus 77 ~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 77 HRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTG 143 (691)
T ss_dssp EEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTT
T ss_pred eEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCccc
Confidence 556779999999999999999999999999999999877776665543 333 4689999999999854
No 182
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.30 E-value=4.3e-11 Score=96.20 Aligned_cols=70 Identities=26% Similarity=0.340 Sum_probs=55.6
Q ss_pred CeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q psy11289 27 DIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDH 101 (159)
Q Consensus 27 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 101 (159)
+..+.++||||||+.+|...+..+++.+|++|+|+|+++.........| ..... .++|+++++||+|+..
T Consensus 79 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 79 YEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK----YKVPRIAFVNKMDRMG 148 (704)
T ss_pred CCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH----cCCCEEEEEeCCCccc
Confidence 3457888999999999998899999999999999999987655544434 23322 4689999999999853
No 183
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.29 E-value=2.1e-11 Score=83.86 Aligned_cols=128 Identities=12% Similarity=0.106 Sum_probs=76.1
Q ss_pred cccccccccceE-EEEEEECCeeEEEEEEeCCCccc----------chHHHHHHh---hcCCEEEEEEECCChhhHHH--
Q psy11289 8 VTDYDPTIEDSY-TKQCVIDDIPARLDILDTAGQEE----------FSAMREQYM---RSGEGFLLVFSVTDRNSFEE-- 71 (159)
Q Consensus 8 ~~~~~pt~~~~~-~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~~---~~~~~ii~v~d~~~~~s~~~-- 71 (159)
...+.|+.|... ...+.+++ .+.+||+||... +......++ +.++++++++|++++.+...
T Consensus 52 ~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~ 128 (210)
T 1pui_A 52 LARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQ 128 (210)
T ss_dssp -----------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH
T ss_pred cccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHH
Confidence 344467777443 34444444 355699999842 333344444 47899999999998755432
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCC--CCHHHHHHHHHHcC--CcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 72 IYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQ--VSSMDAQNVARQLR--IPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 72 ~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
+..|+. . .+.|+++++||+|+..... ...+.+..++...+ +.++++||+++.|++++++.+.+.+.+
T Consensus 129 ~~~~~~----~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 129 MIEWAV----D---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp HHHHHH----H---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHHHHH----H---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 223321 1 4679999999999754221 11234445555554 468899999999999999999887643
No 184
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.28 E-value=2.7e-11 Score=90.63 Aligned_cols=97 Identities=20% Similarity=0.192 Sum_probs=75.1
Q ss_pred CcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHH----HH
Q psy11289 39 GQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQN----VA 114 (159)
Q Consensus 39 g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~ 114 (159)
..++|.++++.+.+.++++++|+|++++. ..|...+.++. .++|+++|+||+|+.+.. ...+...+ ++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHH
Confidence 45788999999999999999999999864 45666666654 478999999999996533 33333333 36
Q ss_pred HHcCC---cEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 115 RQLRI---PYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 115 ~~~~~---~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
+..|+ +++.+||++|.|++++++.+.+..
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 66787 699999999999999999987643
No 185
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.27 E-value=1.3e-11 Score=99.04 Aligned_cols=113 Identities=12% Similarity=0.150 Sum_probs=80.1
Q ss_pred EEEEEeCCCccc---chHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCH
Q psy11289 31 RLDILDTAGQEE---FSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSS 107 (159)
Q Consensus 31 ~~~l~D~~g~~~---~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 107 (159)
.+.||||||... ....+..+++++|++|+|+|++++.+..+...|...+.. .+.|+++|+||+|+.....++.
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~----~~~~iiiVlNK~Dl~~~~~~~~ 250 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG----RGLTVFFLVNAWDQVRESLIDP 250 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT----SCCCEEEEEECGGGGGGGCSST
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh----hCCCEEEEEECcccccccccCh
Confidence 467799999765 345667888999999999999998887776655433322 3678999999999865432221
Q ss_pred H----------HHHH-----HHHHc--------CCcEEEeCCC--------------CCCCHHHHHHHHHHHHHhcc
Q psy11289 108 M----------DAQN-----VARQL--------RIPYIECSAK--------------VRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 108 ~----------~~~~-----~~~~~--------~~~~~~~sa~--------------~~~~i~~~~~~l~~~~~~~~ 147 (159)
+ .... +.... +.+++++||+ +|.|++++++.+.+.+....
T Consensus 251 ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~~~ 327 (695)
T 2j69_A 251 DDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTRER 327 (695)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHHhH
Confidence 1 1111 11111 2469999999 99999999999998776543
No 186
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.25 E-value=2.3e-12 Score=93.96 Aligned_cols=120 Identities=14% Similarity=0.182 Sum_probs=68.2
Q ss_pred EEECCeeEEEEEEeCCCc-------ccchHHHH-------HHhhcC-------------CEEEEEEECCChhhHHHHHHH
Q psy11289 23 CVIDDIPARLDILDTAGQ-------EEFSAMRE-------QYMRSG-------------EGFLLVFSVTDRNSFEEIYKF 75 (159)
Q Consensus 23 ~~~~~~~~~~~l~D~~g~-------~~~~~~~~-------~~~~~~-------------~~ii~v~d~~~~~s~~~~~~~ 75 (159)
+..++....+.+||++|. +++..+.. .+++.. ++++++.+++. .+++.+.
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~-- 145 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD-- 145 (301)
T ss_dssp EC---CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--
T ss_pred ecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--
Confidence 333566678899999998 66666555 555443 33555554432 1233332
Q ss_pred HHHHHhhcCCCCCcEEEEEeCCCCCCcCCC--CHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHhccc
Q psy11289 76 HRQILRVKDRDEFPMLMVGNKADLDHQRQV--SSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLLHTK 148 (159)
Q Consensus 76 ~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 148 (159)
...+.... ...|+++|+||.|+...+.+ ..+++.++++.++++++++||++| |++++|.++.+.+.+..+
T Consensus 146 ~~~l~~l~--~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p 217 (301)
T 2qnr_A 146 VAFMKAIH--NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP 217 (301)
T ss_dssp HHHHHHHT--TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred HHHHHHHH--hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence 12222322 45799999999998754433 245677888899999999999999 999999999998876554
No 187
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.24 E-value=4.8e-12 Score=94.40 Aligned_cols=107 Identities=14% Similarity=0.195 Sum_probs=76.2
Q ss_pred EEEEEeCCCcccc-------------hHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy11289 31 RLDILDTAGQEEF-------------SAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKA 97 (159)
Q Consensus 31 ~~~l~D~~g~~~~-------------~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 97 (159)
.+.+|||||..++ ..+...|++++|++|+|+|..+.+... ..|+..+... ...+.|+++|+||+
T Consensus 137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~-~~~~~~~i~V~nK~ 213 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREV-DPSGDRTFGVLTKI 213 (360)
T ss_dssp SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHS-CTTCTTEEEEEECG
T ss_pred CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHh-cccCCCEEEEEeCC
Confidence 4667999999876 667888999999999999876543221 2233333332 23567999999999
Q ss_pred CCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHH
Q psy11289 98 DLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELV 140 (159)
Q Consensus 98 D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 140 (159)
|+.+......+....++..++.+|+++|++++.++++.+....
T Consensus 214 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 214 DLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp GGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred ccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence 9976555555555555556678899999999988877655443
No 188
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.22 E-value=1.1e-10 Score=83.32 Aligned_cols=99 Identities=15% Similarity=0.141 Sum_probs=65.5
Q ss_pred ccccccccccceEEEEEEECCeeEEEEEEeCCCcccchHHHHHHhh---------cCCEEEEEEECCChhhHHHH-HHHH
Q psy11289 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMR---------SGEGFLLVFSVTDRNSFEEI-YKFH 76 (159)
Q Consensus 7 f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~---------~~~~ii~v~d~~~~~s~~~~-~~~~ 76 (159)
+...+.+++.......+..++.. +.||||||++++....+.+++ ++|++++|++++... +... ..|+
T Consensus 63 ~~~~~~~~t~~~~~~~~~~~~~~--l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~ 139 (262)
T 3def_A 63 RVSPFQAEGLRPVMVSRTMGGFT--INIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVV 139 (262)
T ss_dssp CCCSSCC-CCCCEEEEEEETTEE--EEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHH
T ss_pred ccCCCCCcceeeEEEEEEECCee--EEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHH
Confidence 45666676666666666777775 556999999877544444433 889999999997754 3333 3666
Q ss_pred HHHHhhcCCC-CCcEEEEEeCCCCCCcCCCCHH
Q psy11289 77 RQILRVKDRD-EFPMLMVGNKADLDHQRQVSSM 108 (159)
Q Consensus 77 ~~i~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~ 108 (159)
..+....... ..|+++|+||+|+...+....+
T Consensus 140 ~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e 172 (262)
T 3def_A 140 IAITQTFGKEIWCKTLLVLTHAQFSPPDELSYE 172 (262)
T ss_dssp HHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHH
T ss_pred HHHHHHhchhhhcCEEEEEeCcccCCCCCccHH
Confidence 6666654311 2499999999998654444443
No 189
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.20 E-value=7.1e-14 Score=110.32 Aligned_cols=96 Identities=18% Similarity=0.149 Sum_probs=57.3
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCCh----------hhHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCC
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR----------NSFEEIYKFHRQILRVKDRDEFP-MLMVGNKAD 98 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D 98 (159)
..+.||||||+++|...+...++.+|++|+|+|++++ .+.+.+ .+... .++| +|+|+||+|
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l-----~~~~~---lgip~iIvviNKiD 326 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA-----YLLRA---LGISEIVVSVNKLD 326 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH-----HHHHH---SSCCCEEEEEECGG
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH-----HHHHH---cCCCeEEEEEeccc
Confidence 4566799999999987777788899999999999863 233322 12222 3455 899999999
Q ss_pred CCCcCCCC----HHHHHHHH-HHcCC-----cEEEeCCCCCCCHH
Q psy11289 99 LDHQRQVS----SMDAQNVA-RQLRI-----PYIECSAKVRINVD 133 (159)
Q Consensus 99 ~~~~~~~~----~~~~~~~~-~~~~~-----~~~~~sa~~~~~i~ 133 (159)
+.+...-. .++...+. +.+|+ +++++||++|.|+.
T Consensus 327 l~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 327 LMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp GGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 86421111 12233334 44454 69999999999998
No 190
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.18 E-value=6.9e-10 Score=89.15 Aligned_cols=72 Identities=21% Similarity=0.263 Sum_probs=57.3
Q ss_pred EEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q psy11289 23 CVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDH 101 (159)
Q Consensus 23 ~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 101 (159)
+..++ +.++||||||+.+|...+..+++.+|++|+|+|+++..+......|. .+.. .++|+++++||+|+..
T Consensus 70 ~~~~~--~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~----~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 70 AAWEG--HRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT----YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp EEETT--EEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCCEEEEEECTTSTT
T ss_pred EEECC--eeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH----cCCCEEEEEECCCccc
Confidence 44454 45677999999999988999999999999999999987776655553 3333 4689999999999854
No 191
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.15 E-value=1.6e-10 Score=84.35 Aligned_cols=111 Identities=11% Similarity=0.183 Sum_probs=69.7
Q ss_pred EEEEEeCCCccc-------------chHHHHHHhhcCCEEEEEEECCChhhH-HHHHHHHHHHHhhcCCCCCcEEEEEeC
Q psy11289 31 RLDILDTAGQEE-------------FSAMREQYMRSGEGFLLVFSVTDRNSF-EEIYKFHRQILRVKDRDEFPMLMVGNK 96 (159)
Q Consensus 31 ~~~l~D~~g~~~-------------~~~~~~~~~~~~~~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~p~ivv~nK 96 (159)
.+.||||||..+ +......+++++|++++|+|.++.... .....+...+ ...+.|+++|+||
T Consensus 132 ~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~----~~~~~~~i~v~NK 207 (315)
T 1jwy_B 132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV----DPEGKRTIGVITK 207 (315)
T ss_dssp SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH----CSSCSSEEEEEEC
T ss_pred CcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh----CCCCCcEEEEEcC
Confidence 466799999854 455677888999999999998443211 1111222222 2256899999999
Q ss_pred CCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCC------CCCHHHHHHHHHHHHHh
Q psy11289 97 ADLDHQRQVSSMDAQNVARQLRIPYIECSAKV------RINVDQAFHELVRIVLL 145 (159)
Q Consensus 97 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~------~~~i~~~~~~l~~~~~~ 145 (159)
+|+.+......+........++..++++|+.+ +.|+.++++.+...+..
T Consensus 208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 99875443222222211111235677777664 68999999998877654
No 192
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.15 E-value=1.3e-10 Score=86.94 Aligned_cols=97 Identities=24% Similarity=0.289 Sum_probs=73.3
Q ss_pred CcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHH----HH
Q psy11289 39 GQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQN----VA 114 (159)
Q Consensus 39 g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~ 114 (159)
.+++|.+..+.+++.++++++|+|++++++ .|...+.++. .+.|+++|+||+|+.+.. ...+...+ ++
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l--~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~ 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA--ADNPILLVGNKADLLPRS-VKYPKLLRWMRRMA 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC--TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh--CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHH
Confidence 578899999999999999999999999764 3444455543 478999999999996532 22333333 35
Q ss_pred HHcCC---cEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 115 RQLRI---PYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 115 ~~~~~---~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
+..|+ +++.+||++|.|++++++.+.+..
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 66676 689999999999999999987654
No 193
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.11 E-value=2.1e-10 Score=81.58 Aligned_cols=109 Identities=17% Similarity=0.057 Sum_probs=67.6
Q ss_pred EEEEEEeCCCcccchHHHH------HHhhcCCEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 30 ARLDILDTAGQEEFSAMRE------QYMRSGEGFLLVFSVTDR---NSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~------~~~~~~~~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
+.+.||||||......... ..+.. +++++++|.... ..+.....+...... ..+.|+++|+||+|+.
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL---RLGATTIPALNKVDLL 184 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH---HHTSCEEEEECCGGGC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc---ccCCCeEEEEeccccc
Confidence 4567799999976543211 23455 888888887543 333222221111111 1357999999999986
Q ss_pred CcCCCCHHHHHH----------------------------HHHHcC--CcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 101 HQRQVSSMDAQN----------------------------VARQLR--IPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 101 ~~~~~~~~~~~~----------------------------~~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
....+ ++... ++++++ ++++++||++|.|++++++++.+.+.
T Consensus 185 ~~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 185 SEEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp CHHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 43221 11111 123333 47999999999999999999988764
No 194
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.10 E-value=4.3e-11 Score=89.12 Aligned_cols=103 Identities=18% Similarity=0.245 Sum_probs=70.1
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHH
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMD 109 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 109 (159)
+.+.||||+|.... .......+|++++|+|....+.+..+.. ...+.|.++|+||+|+....... ..
T Consensus 172 ~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~~---------~~~~~p~ivVlNK~Dl~~~~~~~-~~ 238 (355)
T 3p32_A 172 FDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIKK---------GVLELADIVVVNKADGEHHKEAR-LA 238 (355)
T ss_dssp CCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCCT---------TSGGGCSEEEEECCCGGGHHHHH-HH
T ss_pred CCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHHH---------hHhhcCCEEEEECCCCcChhHHH-HH
Confidence 45667999996432 2344589999999999877655433221 11346999999999986432211 11
Q ss_pred HHHHHHH---c-------CCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 110 AQNVARQ---L-------RIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 110 ~~~~~~~---~-------~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
...+... . +.+++++||++|.|++++++++.+.+..
T Consensus 239 ~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 239 ARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 1222222 1 5789999999999999999999987754
No 195
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.01 E-value=7.7e-11 Score=88.94 Aligned_cols=46 Identities=24% Similarity=0.309 Sum_probs=32.6
Q ss_pred CCcEEEEEeCCCCCCcCCCCHHHHHHHHH---HcCCcEEEeCCCCCCCHHHHHH
Q psy11289 87 EFPMLMVGNKADLDHQRQVSSMDAQNVAR---QLRIPYIECSAKVRINVDQAFH 137 (159)
Q Consensus 87 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~sa~~~~~i~~~~~ 137 (159)
.+|+++|+||.|+.. .+....+.+ ..+.+++++||+.+.++.++++
T Consensus 214 ~kP~i~v~NK~D~~~-----~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 214 NKPMVIAANKADAAS-----DEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HSCEEEEEECGGGSC-----HHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred CCCEEEEEeCccccc-----hHHHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence 489999999999752 222333333 3377899999999988876543
No 196
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.00 E-value=4.2e-09 Score=75.46 Aligned_cols=97 Identities=10% Similarity=0.053 Sum_probs=59.7
Q ss_pred ccccccccceEEEEEEECCeeEEEEEEeCCCcccchHH-------HHHH--hhcCCEEEEEEECCChhhHHHH-HHHHHH
Q psy11289 9 TDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAM-------REQY--MRSGEGFLLVFSVTDRNSFEEI-YKFHRQ 78 (159)
Q Consensus 9 ~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~~~--~~~~~~ii~v~d~~~~~s~~~~-~~~~~~ 78 (159)
..+++++.......+..++.. +.+|||||+.++... ...+ .+++|++++|+|++.. ++... ..|+..
T Consensus 68 ~~~~~~t~~~~~~~~~~~~~~--l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~ 144 (270)
T 1h65_A 68 SPFQSEGPRPVMVSRSRAGFT--LNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKA 144 (270)
T ss_dssp CSSSCCCSSCEEEEEEETTEE--EEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHH
T ss_pred cCCCCcceeeEEEEEeeCCeE--EEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHH
Confidence 444555544444444555544 566999999776421 1122 2379999999998753 34332 367777
Q ss_pred HHhhcCC-CCCcEEEEEeCCCCCCcCCCCHH
Q psy11289 79 ILRVKDR-DEFPMLMVGNKADLDHQRQVSSM 108 (159)
Q Consensus 79 i~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~ 108 (159)
+...... ...|+++|+||+|+...+..+.+
T Consensus 145 l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~ 175 (270)
T 1h65_A 145 ITDSFGKGIWNKAIVALTHAQFSPPDGLPYD 175 (270)
T ss_dssp HHHHHCGGGGGGEEEEEECCSCCCGGGCCHH
T ss_pred HHHHhCcccccCEEEEEECcccCCcCCCCHH
Confidence 6655321 12699999999999765544443
No 197
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.99 E-value=4e-10 Score=78.12 Aligned_cols=106 Identities=18% Similarity=0.165 Sum_probs=70.3
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHH
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMD 109 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 109 (159)
+.+.+|||+|+..... .+...++.+++|+|+++.... ...+.. . .+.|.++|+||+|+.+......++
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~~---~----~~~~~iiv~NK~Dl~~~~~~~~~~ 176 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHPE---I----FRVADLIVINKVALAEAVGADVEK 176 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCHH---H----HHTCSEEEEECGGGHHHHTCCHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhhh---h----hhcCCEEEEecccCCcchhhHHHH
Confidence 4566799999521111 111357899999999875421 111111 1 246889999999986543345666
Q ss_pred HHHHHHHc--CCcEEEeCCCCCCCHHHHHHHHHHHHHhcc
Q psy11289 110 AQNVARQL--RIPYIECSAKVRINVDQAFHELVRIVLLHT 147 (159)
Q Consensus 110 ~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 147 (159)
....++.. +++++++||++|.|++++++++.+.+....
T Consensus 177 ~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 177 MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred HHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 66666655 478999999999999999999998875543
No 198
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.99 E-value=1.3e-08 Score=79.68 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=55.5
Q ss_pred EEECCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q psy11289 23 CVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDH 101 (159)
Q Consensus 23 ~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 101 (159)
+.+++ ++++|.||||+.+|.......++-+|++|+|+|+.+.-.-+...-| ....+ .++|.++++||+|...
T Consensus 95 ~~~~~--~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~----~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 95 FPYRD--RVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM----RATPVMTFVNKMDREA 166 (548)
T ss_dssp EEETT--EEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTSCC
T ss_pred EEECC--EEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH----hCCceEEEEecccchh
Confidence 34455 4567799999999999899999999999999999886544443444 33333 5789999999999743
No 199
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.98 E-value=1.5e-09 Score=78.33 Aligned_cols=99 Identities=12% Similarity=-0.010 Sum_probs=69.5
Q ss_pred EeCCCcc-cchHHHHHHhhcCCEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHH
Q psy11289 35 LDTAGQE-EFSAMREQYMRSGEGFLLVFSVTDRNSFE--EIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQ 111 (159)
Q Consensus 35 ~D~~g~~-~~~~~~~~~~~~~~~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 111 (159)
-..||+. +........++.+|+++.|+|+.+|.+.. .+.+|+ .++|.++|+||+|+.+... .+...
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l---------~~kp~ilVlNK~DL~~~~~--~~~~~ 72 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL---------KNKPRIMLLNKADKADAAV--TQQWK 72 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC---------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH---------CCCCEEEEEECcccCCHHH--HHHHH
Confidence 4578875 33445667788999999999999987764 333332 4689999999999975211 12223
Q ss_pred HHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 112 NVARQLRIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 112 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
.+.+..|++++.+||+++.|+.++++.+.+.+.
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 444456889999999999999999998877665
No 200
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.96 E-value=2.2e-09 Score=87.92 Aligned_cols=70 Identities=20% Similarity=0.304 Sum_probs=59.2
Q ss_pred CCeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 26 DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 26 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
++..+.++||||||+.+|...+..+++.+|++|+|+|+++..+++....|... .. .++|+++++||+|+.
T Consensus 94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQA-LG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHH-HH----TTCEEEEEEECHHHH
T ss_pred cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH-HH----cCCCeEEEEECCCcc
Confidence 45578899999999999999999999999999999999998888776655432 22 468999999999985
No 201
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.94 E-value=1.9e-10 Score=87.18 Aligned_cols=113 Identities=12% Similarity=0.160 Sum_probs=54.9
Q ss_pred CCeeEEEEEEeCCCcccch-------HHH-------HH-----------HhhcCCEEEEEEECCCh-hhHHHHH-HHHHH
Q psy11289 26 DDIPARLDILDTAGQEEFS-------AMR-------EQ-----------YMRSGEGFLLVFSVTDR-NSFEEIY-KFHRQ 78 (159)
Q Consensus 26 ~~~~~~~~l~D~~g~~~~~-------~~~-------~~-----------~~~~~~~ii~v~d~~~~-~s~~~~~-~~~~~ 78 (159)
++....+.+||++|...+. .+. .. ++.++++.+++|..+.. .++..+. .|+..
T Consensus 84 ~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~ 163 (418)
T 2qag_C 84 GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKR 163 (418)
T ss_dssp ---CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHH
T ss_pred CCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHH
Confidence 4555678889999986541 111 11 23445544445544432 3444443 46555
Q ss_pred HHhhcCCCCCcEEEEEeCCCCCCcCCCCH--HHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 79 ILRVKDRDEFPMLMVGNKADLDHQRQVSS--MDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 79 i~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
+. .++|+|+|+||+|+...+.+.. +.+...+...+++++++|++++.++.++|..+...+
T Consensus 164 L~-----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 164 LH-----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HT-----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred Hh-----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 42 3689999999999876555543 566777888899999999999999999888776543
No 202
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.94 E-value=3.5e-12 Score=88.91 Aligned_cols=58 Identities=21% Similarity=0.134 Sum_probs=47.4
Q ss_pred CcEEEEEeCCCCCCcCCCCHHHHHHHHHHc--CCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 88 FPMLMVGNKADLDHQRQVSSMDAQNVARQL--RIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 88 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
.|.++|+||+|+.+......++...+++.+ +++++++||++|.|++++|+++.+.+..
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 467999999998654445567777777765 5789999999999999999999987754
No 203
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.92 E-value=2.6e-08 Score=74.18 Aligned_cols=42 Identities=10% Similarity=0.060 Sum_probs=30.7
Q ss_pred CCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCC
Q psy11289 86 DEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAK 127 (159)
Q Consensus 86 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 127 (159)
..+|+++++|+.|..-....-.+..+.++...+.+++++||+
T Consensus 198 t~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~ 239 (363)
T 1jal_A 198 TLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA 239 (363)
T ss_dssp TTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred cCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence 358999999999854212223456677888889999999965
No 204
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.87 E-value=1.5e-10 Score=86.12 Aligned_cols=108 Identities=17% Similarity=0.142 Sum_probs=65.0
Q ss_pred EEEEEEeCCCcc-------------cchHHHHHHhhcCCEEEE-EEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEe
Q psy11289 30 ARLDILDTAGQE-------------EFSAMREQYMRSGEGFLL-VFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGN 95 (159)
Q Consensus 30 ~~~~l~D~~g~~-------------~~~~~~~~~~~~~~~ii~-v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~n 95 (159)
..+.||||||.. .+..+...|+++++.+++ +.|.+....-.....++..+ ...+.|+++|+|
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~----~~~~~~~i~V~N 205 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEV----DPQGQRTIGVIT 205 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHH----CTTCTTEEEEEE
T ss_pred CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHh----CcCCCceEEEec
Confidence 346779999963 345677788877665555 45554422211222233222 235789999999
Q ss_pred CCCCCCcCCCCHHHHHH--HHHHcC-CcEEEeCCCCCCCHHHHHHHHHH
Q psy11289 96 KADLDHQRQVSSMDAQN--VARQLR-IPYIECSAKVRINVDQAFHELVR 141 (159)
Q Consensus 96 K~D~~~~~~~~~~~~~~--~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~ 141 (159)
|+|+.+......+.... +....+ .+++++||+++.|++++++++..
T Consensus 206 K~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 206 KLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp CGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred cccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 99987543311211110 000123 24678999999999999998876
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.85 E-value=6.6e-09 Score=76.93 Aligned_cols=103 Identities=20% Similarity=0.262 Sum_probs=63.9
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCH--
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSS-- 107 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~-- 107 (159)
+.+.||||||...... ...+.+|++++|+|+++.+.+..+.. .. .+.|.++|+||+|+.+...+..
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~~~~ 216 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVAIAR 216 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHHHHH
Confidence 3466799999865432 34689999999999976543221111 00 1458899999999864221111
Q ss_pred HHHHHHHHHc-------CCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 108 MDAQNVARQL-------RIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 108 ~~~~~~~~~~-------~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
++.......+ ..+++++||++|.|++++++.+.+.+.
T Consensus 217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1111111122 346899999999999999999998764
No 206
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.80 E-value=4.6e-08 Score=72.66 Aligned_cols=101 Identities=14% Similarity=0.127 Sum_probs=61.1
Q ss_pred EEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHH
Q psy11289 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDA 110 (159)
Q Consensus 31 ~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 110 (159)
.+.|+||+|.... .......+|.+++|+|++++.....+.. .+ ...|.++|+||+|+.+.... ....
T Consensus 168 ~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~-~~~~ 234 (349)
T 2www_A 168 DIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPA-RRIQ 234 (349)
T ss_dssp SEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred CEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhH-HHHH
Confidence 3566999997432 2344678999999999987644322211 11 24588999999998532111 0112
Q ss_pred HHHHHH----------cCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 111 QNVARQ----------LRIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 111 ~~~~~~----------~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
..+... .+.+++.+||++|.|++++++++.+.+.
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 222221 1356899999999999999999988763
No 207
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.77 E-value=1.2e-08 Score=81.24 Aligned_cols=66 Identities=23% Similarity=0.348 Sum_probs=50.9
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
.+++|.||||+.+|......-++-+|++|+|+|+.+.-.-+...-| ....+ .++|.+++.||+|..
T Consensus 67 ~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~----~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 67 TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRK----MGIPTIFFINKIDQN 132 (638)
T ss_dssp CBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHH----HTCSCEECCEECCSS
T ss_pred EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHH----cCCCeEEEEeccccc
Confidence 4567799999999999999999999999999999875333332223 33333 457889999999974
No 208
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.75 E-value=1.8e-07 Score=69.84 Aligned_cols=49 Identities=16% Similarity=0.168 Sum_probs=34.6
Q ss_pred CCcEEEEEeCCCCC--Cc-CCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHH
Q psy11289 87 EFPMLMVGNKADLD--HQ-RQVSSMDAQNVARQLRIPYIECSAKVRINVDQA 135 (159)
Q Consensus 87 ~~p~ivv~nK~D~~--~~-~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 135 (159)
.+|+++++||.|.. +. +....+..+.+++..+.+++++||+.+.++.++
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL 252 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAEL 252 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTS
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHh
Confidence 47999999999742 21 123356677888888999999999874444433
No 209
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.73 E-value=2.4e-07 Score=74.69 Aligned_cols=67 Identities=25% Similarity=0.341 Sum_probs=53.5
Q ss_pred eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
.+.++|.||||+.+|.......++-+|++|+|+|+...-..+...-| .+..+ .++|.+++.||+|..
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~-~~a~~----~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVW-RQANK----YGVPRIVYVNKMDRQ 150 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH----HTCCEEEEEECSSST
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHH-HHHHH----cCCCeEEEEcccccc
Confidence 57889999999999999999999999999999999875444433333 33333 467999999999974
No 210
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.67 E-value=5e-08 Score=76.50 Aligned_cols=68 Identities=22% Similarity=0.258 Sum_probs=52.6
Q ss_pred EEEEEeCCCccc-----------chHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q psy11289 31 RLDILDTAGQEE-----------FSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADL 99 (159)
Q Consensus 31 ~~~l~D~~g~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 99 (159)
.+.||||||... |...+..++..+|++|+|+|+++.........|+..+.. .+.|+++|+||+|+
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~pvilVlNK~Dl 230 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HEDKIRVVLNKADM 230 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGGGEEEEEECGGG
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCCCEEEEEECCCc
Confidence 467899999875 556777889999999999999886555555566655432 46799999999998
Q ss_pred CCc
Q psy11289 100 DHQ 102 (159)
Q Consensus 100 ~~~ 102 (159)
...
T Consensus 231 ~~~ 233 (550)
T 2qpt_A 231 VET 233 (550)
T ss_dssp SCH
T ss_pred cCH
Confidence 753
No 211
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.54 E-value=5.9e-08 Score=69.32 Aligned_cols=93 Identities=9% Similarity=-0.059 Sum_probs=62.1
Q ss_pred CCCcccc-hHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHH
Q psy11289 37 TAGQEEF-SAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVAR 115 (159)
Q Consensus 37 ~~g~~~~-~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 115 (159)
.||+... .......++++|+++.|+|+.+|.+..... +. +. ++|.++|.||+|+.+... .+....+.+
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-----l~-ll---~k~~iivlNK~DL~~~~~--~~~~~~~~~ 72 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-----VD-FS---RKETIILLNKVDIADEKT--TKKWVEFFK 72 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-----SC-CT---TSEEEEEEECGGGSCHHH--HHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-----HH-hc---CCCcEEEEECccCCCHHH--HHHHHHHHH
Confidence 4666533 335667788999999999999987764311 11 11 689999999999975311 122234455
Q ss_pred HcCCcEEEeCCCCCCCHHHHHHHHHH
Q psy11289 116 QLRIPYIECSAKVRINVDQAFHELVR 141 (159)
Q Consensus 116 ~~~~~~~~~sa~~~~~i~~~~~~l~~ 141 (159)
..|+++ .+||+++.|++++++.+..
T Consensus 73 ~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 73 KQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 568888 9999999999998877643
No 212
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.53 E-value=4.4e-08 Score=79.12 Aligned_cols=105 Identities=15% Similarity=0.077 Sum_probs=67.9
Q ss_pred EEEEeCCCccc-------------chHHHHHHh-hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy11289 32 LDILDTAGQEE-------------FSAMREQYM-RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKA 97 (159)
Q Consensus 32 ~~l~D~~g~~~-------------~~~~~~~~~-~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 97 (159)
+.|+||||..+ ...+...|+ ..+|++++|.|++++.+-.+...++..+. ..+.|+++|.||+
T Consensus 152 L~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~----~~g~pvIlVlNKi 227 (772)
T 3zvr_A 152 LTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVITKL 227 (772)
T ss_dssp EEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC----TTCSSEEEEEECT
T ss_pred eEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH----hcCCCEEEEEeCc
Confidence 45599999654 223445555 47899999999987533323222233332 2568999999999
Q ss_pred CCCCcCCCCHHHHHHHHHH----cC-CcEEEeCCCCCCCHHHHHHHHHHH
Q psy11289 98 DLDHQRQVSSMDAQNVARQ----LR-IPYIECSAKVRINVDQAFHELVRI 142 (159)
Q Consensus 98 D~~~~~~~~~~~~~~~~~~----~~-~~~~~~sa~~~~~i~~~~~~l~~~ 142 (159)
|+.+.......... .+. ++ .+++.+||++|.|++++++.+...
T Consensus 228 Dlv~~~~~~~~il~--~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 228 DLMDEGTDARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp TSSCTTCCSHHHHT--TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred ccCCcchhhHHHHH--HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 98765443322111 111 12 246789999999999999998863
No 213
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.46 E-value=3.2e-08 Score=72.19 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=59.1
Q ss_pred HHHHHhhcCCEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCC--CHHHHHHHHHHcCCcEE
Q psy11289 46 MREQYMRSGEGFLLVFSVTDRNS-FEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQV--SSMDAQNVARQLRIPYI 122 (159)
Q Consensus 46 ~~~~~~~~~~~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~ 122 (159)
+.+..+.++|.+++|+|+.+|.. ...+.+++.... ..++|+++|.||+|+.+.... ..+......+..|.+++
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~----~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence 33446889999999999997654 444444443322 257899999999999753210 01223344445689999
Q ss_pred EeCCCCCCCHHHHHH
Q psy11289 123 ECSAKVRINVDQAFH 137 (159)
Q Consensus 123 ~~sa~~~~~i~~~~~ 137 (159)
.+||.++.|++++++
T Consensus 155 ~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 155 LTSSKDQDSLADIIP 169 (307)
T ss_dssp ECCHHHHTTCTTTGG
T ss_pred EEecCCCCCHHHHHh
Confidence 999998888776543
No 214
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.40 E-value=1.1e-06 Score=64.84 Aligned_cols=102 Identities=18% Similarity=0.149 Sum_probs=62.1
Q ss_pred EEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHH
Q psy11289 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDA 110 (159)
Q Consensus 31 ~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 110 (159)
.+.|+||+|...... .....+|.+++++|....+..+.+... + ...|.+++.||+|+......+....
T Consensus 149 ~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~---i------~~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 149 DVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKG---I------FELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp CEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTT---H------HHHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHH---H------hccccEEEEEchhccCchhHHHHHH
Confidence 355599999864322 335789999999998754432211111 1 1235577789999643222222222
Q ss_pred HHHHHHc----------CCcEEEeCCCCCCCHHHHHHHHHHHHH
Q psy11289 111 QNVARQL----------RIPYIECSAKVRINVDQAFHELVRIVL 144 (159)
Q Consensus 111 ~~~~~~~----------~~~~~~~sa~~~~~i~~~~~~l~~~~~ 144 (159)
..+.... +.+++.+||+++.|++++++.+.+...
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3333321 346899999999999999999988654
No 215
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.21 E-value=3.7e-06 Score=62.51 Aligned_cols=83 Identities=13% Similarity=0.117 Sum_probs=55.3
Q ss_pred hhcCCEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCC-HHHHHHHHHHcCCcEEEeCCCC
Q psy11289 51 MRSGEGFLLVFSVTDRN-SFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVS-SMDAQNVARQLRIPYIECSAKV 128 (159)
Q Consensus 51 ~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~sa~~ 128 (159)
..++|.+++|.+.. |. +...+.+++..... .++|+++|.||+|+.+..... .+.........|++++.+||.+
T Consensus 128 ~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 128 AANIDQIVIVSAIL-PELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EECCCEEEEEEEST-TTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 57899999987654 54 34445555543322 467889999999997532100 1112233345689999999999
Q ss_pred CCCHHHHHHH
Q psy11289 129 RINVDQAFHE 138 (159)
Q Consensus 129 ~~~i~~~~~~ 138 (159)
+.|++++...
T Consensus 203 ~~gl~~L~~~ 212 (358)
T 2rcn_A 203 QDGLKPLEEA 212 (358)
T ss_dssp TBTHHHHHHH
T ss_pred CcCHHHHHHh
Confidence 9999987654
No 216
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.21 E-value=4e-05 Score=57.34 Aligned_cols=111 Identities=13% Similarity=0.052 Sum_probs=72.2
Q ss_pred cccccccccccceEEEEEEECCeeEEEEEEeCCCcccchH----H---HHHHhhcCCEEEEEEECCChhh-HHHHHHHHH
Q psy11289 6 YFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSA----M---REQYMRSGEGFLLVFSVTDRNS-FEEIYKFHR 77 (159)
Q Consensus 6 ~f~~~~~pt~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~---~~~~~~~~~~ii~v~d~~~~~s-~~~~~~~~~ 77 (159)
....+|+.|+-+.....+.+++.++ +|.||||..+-.+ + .-..++.+|++++|+|+++|.. .+.+..-+.
T Consensus 97 ~~v~~~pftT~~~~~g~~~~~~~~i--~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~ 174 (376)
T 4a9a_A 97 SEAAEYEFTTLVTVPGVIRYKGAKI--QMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELE 174 (376)
T ss_dssp CCGGGTCSSCCCEEEEEEEETTEEE--EEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHH
T ss_pred CcccCCCCceeeeeeEEEEeCCcEE--EEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHHHHHHH
Confidence 4567888998888888888888875 5599999854322 1 2234678999999999998743 222222222
Q ss_pred HHHhhcCCCCCcEEEEEeCCCCCC--------cCCCCHHHHHHHHHHcCCc
Q psy11289 78 QILRVKDRDEFPMLMVGNKADLDH--------QRQVSSMDAQNVARQLRIP 120 (159)
Q Consensus 78 ~i~~~~~~~~~p~ivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~ 120 (159)
.+.. .....|.+++.||.|... ....+.++...+...+.+.
T Consensus 175 ~~~~--~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt 223 (376)
T 4a9a_A 175 GVGI--RLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRIN 223 (376)
T ss_dssp HTTE--EETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCC
T ss_pred HhhH--hhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhccc
Confidence 2111 124578889999999632 2345667777776666543
No 217
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.58 E-value=0.0024 Score=48.08 Aligned_cols=57 Identities=11% Similarity=0.044 Sum_probs=40.4
Q ss_pred CCcEEEEEeCCCCC--CcCCCCHHHHHHHHHHcC--CcEEEeCCCC---------------------CCCHHHHHHHHHH
Q psy11289 87 EFPMLMVGNKADLD--HQRQVSSMDAQNVARQLR--IPYIECSAKV---------------------RINVDQAFHELVR 141 (159)
Q Consensus 87 ~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~--~~~~~~sa~~---------------------~~~i~~~~~~l~~ 141 (159)
..|++.++|+.|.. ....--.+...+++...+ .+++.+||.. +.|++.+.+...+
T Consensus 224 ~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~~~~~ 303 (392)
T 1ni3_A 224 AKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYN 303 (392)
T ss_dssp GSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred cCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 48999999999832 111222556777877765 7899999875 5778888877765
Q ss_pred HH
Q psy11289 142 IV 143 (159)
Q Consensus 142 ~~ 143 (159)
.+
T Consensus 304 ~L 305 (392)
T 1ni3_A 304 AL 305 (392)
T ss_dssp HT
T ss_pred Hh
Confidence 44
No 218
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.49 E-value=0.0001 Score=55.51 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=23.9
Q ss_pred EEEEEEeCCCcccchH-------HHHHHhhcCCEEEEEEECCChhh
Q psy11289 30 ARLDILDTAGQEEFSA-------MREQYMRSGEGFLLVFSVTDRNS 68 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~-------~~~~~~~~~~~ii~v~d~~~~~s 68 (159)
..+++|||||..++.+ .+..+++++|++++|+|+++.++
T Consensus 86 ~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp CEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred cccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 3588899999987654 45667899999999999986443
No 219
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.13 E-value=0.00074 Score=52.42 Aligned_cols=101 Identities=12% Similarity=0.154 Sum_probs=61.4
Q ss_pred EEEEEEeCCCcccch-HHHHH---H--hhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEEeCCCCCCc
Q psy11289 30 ARLDILDTAGQEEFS-AMREQ---Y--MRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM-LMVGNKADLDHQ 102 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~-~~~~~---~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~D~~~~ 102 (159)
+.+.|+||||..... .++.. . ...+|.+++|+|+......... ...+.. ..|+ ++|.||.|....
T Consensus 184 ~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~~~-----~~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 184 FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAFKD-----KVDVASVIVTKLDGHAK 255 (504)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHHHH-----HHCCCCEEEECTTSCCC
T ss_pred CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHHHh-----hcCceEEEEeCCccccc
Confidence 346669999986432 12211 1 2278999999999875432111 122222 1464 789999997532
Q ss_pred CCCCHHHHHHHHHHcCCcE------------------EEeCCCCCCC-HHHHHHHHHHH
Q psy11289 103 RQVSSMDAQNVARQLRIPY------------------IECSAKVRIN-VDQAFHELVRI 142 (159)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~------------------~~~sa~~~~~-i~~~~~~l~~~ 142 (159)
.. .........++|+ +.+|+..|.| +.++++++.+.
T Consensus 256 ~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 256 GG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred hH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 21 1233444556554 2368889988 99988888765
No 220
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.10 E-value=0.055 Score=41.32 Aligned_cols=86 Identities=15% Similarity=0.030 Sum_probs=51.2
Q ss_pred EEEEEEeCCCcccchH-HHH-----HHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcC
Q psy11289 30 ARLDILDTAGQEEFSA-MRE-----QYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQR 103 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~-~~~-----~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 103 (159)
+.+.|+||+|...... +.. .....+|.+++|.|++........ ...+... -.+..+|.||.|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~~----~~i~gVIlTKlD~~~~- 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKEA----TPIGSIIVTKLDGSAK- 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHS----CTTEEEEEECCSSCSS-
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHhh----CCCeEEEEECCCCccc-
Confidence 4456799999754321 111 112367999999999865433222 2233321 1356788999997532
Q ss_pred CCCHHHHHHHHHHcCCcEEEeCC
Q psy11289 104 QVSSMDAQNVARQLRIPYIECSA 126 (159)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~sa 126 (159)
...+..+....++|+..++.
T Consensus 255 ---gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 255 ---GGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp ---HHHHHHHHHTTCCCEEEEEC
T ss_pred ---ccHHHHHHHHHCCCEEEEEc
Confidence 23345566678899877765
No 221
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.80 E-value=0.045 Score=36.62 Aligned_cols=86 Identities=7% Similarity=-0.002 Sum_probs=54.9
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCcCCCCHH
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD-RDEFPMLMVGNKADLDHQRQVSSM 108 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~ 108 (159)
+.+.++|+|+.. .......+..+|.++++...+... ..+...+..+.+... ..+.++.+|.|+.|... .. ..
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~--~~-~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA--TM-LN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE--EE-EH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc--hH-HH
Confidence 445679999875 334556667799999999876544 566666666655432 23467789999998432 11 23
Q ss_pred HHHHHHHHcCCcEE
Q psy11289 109 DAQNVARQLRIPYI 122 (159)
Q Consensus 109 ~~~~~~~~~~~~~~ 122 (159)
+..++.++++.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 45555566665544
No 222
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.16 E-value=0.19 Score=36.24 Aligned_cols=91 Identities=15% Similarity=0.084 Sum_probs=54.4
Q ss_pred EEEEEEeCCCccc--chH-HHH-----HHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCC
Q psy11289 30 ARLDILDTAGQEE--FSA-MRE-----QYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFP-MLMVGNKADLD 100 (159)
Q Consensus 30 ~~~~l~D~~g~~~--~~~-~~~-----~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~ 100 (159)
+.+.+.||||... ... +.. .....+|.+++|.|+..... .......+.. ..| ..+|.||.|..
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKMDGT 252 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECGGGC
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCCCCC
Confidence 3456699999876 322 221 12447899999999875322 2111222222 245 67889999964
Q ss_pred CcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHH
Q psy11289 101 HQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQ 134 (159)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 134 (159)
. .......++...++|+..++ +|.++++
T Consensus 253 ~----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 253 A----KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp T----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred c----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 2 13345567778889987766 4555543
No 223
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.77 E-value=0.36 Score=34.54 Aligned_cols=112 Identities=8% Similarity=0.101 Sum_probs=68.8
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCCCCcCCCCHH
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPML-MVGNKADLDHQRQVSSM 108 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~~~~~~~~~ 108 (159)
+.+.|+|+|+...... ....+..+|.+|++... +..++..+...+..+.......+.+++ +|.|+.+.. .
T Consensus 157 yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-------~ 227 (307)
T 3end_A 157 TDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-------D 227 (307)
T ss_dssp CSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------H
T ss_pred CCEEEEeCCCccchHH-HHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-------H
Confidence 4566799987543221 22445789999999865 566777777777776654333456655 889999831 3
Q ss_pred HHHHHHHHcCCcEEEeC---------CCCC------------CCHHHHHHHHHHHHHhccccC
Q psy11289 109 DAQNVARQLRIPYIECS---------AKVR------------INVDQAFHELVRIVLLHTKQC 150 (159)
Q Consensus 109 ~~~~~~~~~~~~~~~~s---------a~~~------------~~i~~~~~~l~~~~~~~~~~~ 150 (159)
...++++.++.+++..= ...| ......+..+...+.......
T Consensus 228 ~~~~~~~~~g~~v~~~Ip~~~~v~~a~~~g~~v~~~~p~~~~s~~~~~~~~la~~l~~~~~~~ 290 (307)
T 3end_A 228 EVDRFCKETNFRRLAHMPDLDAIRRSRLKKKTLFEMDEDQDVLAARAEYIRLAESLWRGLDPI 290 (307)
T ss_dssp HHHHHHHHHTCCEEEEECCCHHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHcCCCceeeCCccHHHHHHHHcCCCeEeeCCccccHHHHHHHHHHHHHHHhcCCCC
Confidence 45667777787755420 0011 124566777777777655443
No 224
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.36 E-value=0.64 Score=31.35 Aligned_cols=85 Identities=8% Similarity=0.055 Sum_probs=54.2
Q ss_pred EEEEEEeCCCc-ccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHH
Q psy11289 30 ARLDILDTAGQ-EEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSM 108 (159)
Q Consensus 30 ~~~~l~D~~g~-~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 108 (159)
+.+.+.|+|+. ... .....+..+|.+|++... +..++..+...++.+.+.. +.++.+|.|+.+.... .. ..
T Consensus 68 yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~-~~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~~-~~-~~ 139 (209)
T 3cwq_A 68 YQNIVIDTQARPEDE--DLEALADGCDLLVIPSTP-DALALDALMLTIETLQKLG---NNRFRILLTIIPPYPS-KD-GD 139 (209)
T ss_dssp CSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECS-SHHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTTS-CH-HH
T ss_pred CCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecC-CchhHHHHHHHHHHHHhcc---CCCEEEEEEecCCccc-hH-HH
Confidence 44566999987 432 344566789999999876 4566777776666665532 4568899999985320 11 34
Q ss_pred HHHHHHHHcCCcEE
Q psy11289 109 DAQNVARQLRIPYI 122 (159)
Q Consensus 109 ~~~~~~~~~~~~~~ 122 (159)
+..+..+++|.+++
T Consensus 140 ~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 140 EARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHHTTCCBC
T ss_pred HHHHHHHHcCCchh
Confidence 44555555665544
No 225
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.93 E-value=0.2 Score=38.14 Aligned_cols=86 Identities=12% Similarity=0.041 Sum_probs=51.2
Q ss_pred EEEEEEeCCCccc--ch-HHH---HHH--hhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q psy11289 30 ARLDILDTAGQEE--FS-AMR---EQY--MRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDH 101 (159)
Q Consensus 30 ~~~~l~D~~g~~~--~~-~~~---~~~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 101 (159)
+.+.|.||+|... .. .+. ... .-.++.+++|.|+......... ...+.+.. .+..+|.||.|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~---a~~f~~~~----~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL---ASRFHQAS----PIGSVIITKMDGTA 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH---HHHHHHHC----SSEEEEEECGGGCS
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH---HHHHhccc----CCcEEEEecccccc
Confidence 3455799999644 11 111 111 2256999999999865433222 23333321 25678999999642
Q ss_pred cCCCCHHHHHHHHHHcCCcEEEeCC
Q psy11289 102 QRQVSSMDAQNVARQLRIPYIECSA 126 (159)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~sa 126 (159)
....+.......++|+..++.
T Consensus 253 ----~~G~als~~~~~g~Pi~fig~ 273 (433)
T 3kl4_A 253 ----KGGGALSAVVATGATIKFIGT 273 (433)
T ss_dssp ----CHHHHHHHHHHHTCEEEEEEC
T ss_pred ----cchHHHHHHHHHCCCEEEEEC
Confidence 233455666678999877775
No 226
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=93.49 E-value=1 Score=30.79 Aligned_cols=88 Identities=10% Similarity=0.106 Sum_probs=57.9
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHH
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMD 109 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 109 (159)
+.+.++|+|+... ......+..+|.++++... +..+...+..+++.+.+... ....+-+|.|+.+... ....
T Consensus 119 yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~-~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~N~~~~~~--~~~~-- 190 (245)
T 3ea0_A 119 YDYIIVDFGASID--HVGVWVLEHLDELCIVTTP-SLQSLRRAGQLLKLCKEFEK-PISRIEIILNRADTNS--RITS-- 190 (245)
T ss_dssp CSEEEEEEESSCC--TTHHHHGGGCSEEEEEECS-SHHHHHHHHHHHHHHHTCSS-CCSCEEEEEESTTSCT--TSCH--
T ss_pred CCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhCC-CccceEEEEecCCCCC--CCCH--
Confidence 4566799997643 2345567789999999876 46777777777777755431 2345778899998532 2333
Q ss_pred HHHHHHHcCCcEEEeCC
Q psy11289 110 AQNVARQLRIPYIECSA 126 (159)
Q Consensus 110 ~~~~~~~~~~~~~~~sa 126 (159)
..+.+.++.+++.+-.
T Consensus 191 -~~~~~~~~~~v~~~ip 206 (245)
T 3ea0_A 191 -DEIEKVIGRPISKRIP 206 (245)
T ss_dssp -HHHHHHHTSCEEEEEC
T ss_pred -HHHHHHhCCCeEEECC
Confidence 3455567887765533
No 227
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=92.97 E-value=0.84 Score=31.83 Aligned_cols=90 Identities=10% Similarity=0.056 Sum_probs=52.2
Q ss_pred eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCCCC-----c
Q psy11289 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPML-MVGNKADLDH-----Q 102 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~~-----~ 102 (159)
.+.+.|+|+|+..............+|.+|++...+ ..+...+...+..+.+ .+.+++ +|.|+.|... .
T Consensus 128 ~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~ 202 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQ-ELTAVIVEKAINMAEE----TNTSVLGLVENMSYFVCPNCGHK 202 (262)
T ss_dssp SCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSS-SCCHHHHHHHHHHHHT----TTCCEEEEEETTCCEECTTTCCE
T ss_pred CCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCc-cchHHHHHHHHHHHHh----CCCCEEEEEECCCccCCcccccc
Confidence 355667999986532222222223689999998765 3455566665555543 345666 8899987421 1
Q ss_pred CCC-CHHHHHHHHHHcCCcEEE
Q psy11289 103 RQV-SSMDAQNVARQLRIPYIE 123 (159)
Q Consensus 103 ~~~-~~~~~~~~~~~~~~~~~~ 123 (159)
..+ .......+++.++.+++.
T Consensus 203 ~~~~~~~~~~~~~~~~g~~~~~ 224 (262)
T 2ph1_A 203 SYIFGEGKGESLAKKYNIGFFT 224 (262)
T ss_dssp ECTTCCCCHHHHHHHTTCSEEE
T ss_pred cccccccHHHHHHHHcCCCeEE
Confidence 111 112245667778888665
No 228
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.92 E-value=1.7 Score=33.04 Aligned_cols=83 Identities=18% Similarity=0.120 Sum_probs=47.9
Q ss_pred EEEEEEeCCCcccchH-HHHH---H--hhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCC-c-EEEEEeCCCCCC
Q psy11289 30 ARLDILDTAGQEEFSA-MREQ---Y--MRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEF-P-MLMVGNKADLDH 101 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~-~~~~---~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-p-~ivv~nK~D~~~ 101 (159)
+.+.|+||+|...... +... . +..+|.+++|.|+...... .... .... ... | ..+|.||.|...
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~---~~~~---~~~~--~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQA---GIQA---KAFK--EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGH---HHHH---HHHH--TTSCSCEEEEEECSSSCS
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHH---HHHH---HHHh--hcccCCeEEEEeCCCCcc
Confidence 3456699999865422 1111 1 1268999999998765321 1111 2222 234 5 788999999743
Q ss_pred cCCCCHHHHHHHHHHcCCcEEEe
Q psy11289 102 QRQVSSMDAQNVARQLRIPYIEC 124 (159)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~ 124 (159)
.. .....+....+.|+..+
T Consensus 253 ~~----g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 253 KG----GGALSAVAETKAPIKFI 271 (432)
T ss_dssp TT----HHHHHHHHHSSCCEEEE
T ss_pred ch----HHHHHHHHHHCCCEEEe
Confidence 21 23345666778776555
No 229
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=92.90 E-value=0.85 Score=31.68 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=41.6
Q ss_pred eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCCcEE-EEEeCCCC
Q psy11289 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK--DRDEFPML-MVGNKADL 99 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~p~i-vv~nK~D~ 99 (159)
.+.+.|+|+|+.... .....+..+|.+|++...+. .++..+..+++.+.... ...+.+++ +|.|+.+.
T Consensus 111 ~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~ 181 (257)
T 1wcv_1 111 GYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDG 181 (257)
T ss_dssp TCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCT
T ss_pred CCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECC
Confidence 345667999976432 23445567999999998754 44554444444443321 12456664 88999884
No 230
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=91.40 E-value=1.1 Score=31.25 Aligned_cols=64 Identities=8% Similarity=0.150 Sum_probs=44.5
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKAD 98 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 98 (159)
+.+.|+|+|+... ......+..+|.+|++...+ ..+...+...+..+.... .+.++.+|.|+.+
T Consensus 145 yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 145 YDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKLN--LFLPIFLIITRFK 208 (267)
T ss_dssp CSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTTT--CCCCEEEEEEEEC
T ss_pred CCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHHh--ccCCEEEEEeccc
Confidence 4456799997642 33455666799999999874 556666666666665543 3567788999984
No 231
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=91.28 E-value=2.6 Score=29.12 Aligned_cols=83 Identities=17% Similarity=0.113 Sum_probs=52.2
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHH
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMD 109 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 109 (159)
+.+.|+|+|+... ......+..+|.+|++... +..+...+...+..+.+. ...+.-+|.|+.+..... ..
T Consensus 111 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~-~~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~~~----~~ 180 (263)
T 1hyq_A 111 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNP-EISSITDGLKTKIVAERL---GTKVLGVVVNRITTLGIE----MA 180 (263)
T ss_dssp CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECS-SHHHHHHHHHHHHHHHHH---TCEEEEEEEEEECTTTHH----HH
T ss_pred CCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCC-ChhHHHHHHHHHHHHHhc---CCCeeEEEEccCCccccc----ch
Confidence 4466799997643 3345566789999999875 455666776666666554 123455789998853211 33
Q ss_pred HHHHHHHcCCcEE
Q psy11289 110 AQNVARQLRIPYI 122 (159)
Q Consensus 110 ~~~~~~~~~~~~~ 122 (159)
...+.+.++.+++
T Consensus 181 ~~~~~~~~~~~~~ 193 (263)
T 1hyq_A 181 KNEIEAILEAKVI 193 (263)
T ss_dssp HHHHHHHTTSCEE
T ss_pred HHHHHHHhCCCeE
Confidence 4555666776643
No 232
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=91.10 E-value=0.011 Score=44.12 Aligned_cols=95 Identities=11% Similarity=-0.004 Sum_probs=54.7
Q ss_pred EEEEeCCCcccchH--------HHHHHh--hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q psy11289 32 LDILDTAGQEEFSA--------MREQYM--RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDH 101 (159)
Q Consensus 32 ~~l~D~~g~~~~~~--------~~~~~~--~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 101 (159)
+.++||||.....+ ....++ +..+.++++.+....--+..+.+ + ......+.|++++.||.|..+
T Consensus 214 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l-~~l~~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 214 ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR----L-DYIKGGRRSFVCYMANELTVH 288 (369)
T ss_dssp CEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE----E-EEEESSSEEEEEEECTTSCEE
T ss_pred eEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE----E-EEccCCCceEEEEecCCcccc
Confidence 46699999753321 122222 67899999998743211111110 1 111224679999999999865
Q ss_pred cCCCCHHHHHHHHHHcCCcEEEeCCCCCCCH
Q psy11289 102 QRQVSSMDAQNVARQLRIPYIECSAKVRINV 132 (159)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 132 (159)
...... ....+.+.+|..+...++.+..++
T Consensus 289 ~~~~~~-~~~~~~~~~g~~l~p~~~~~~~~~ 318 (369)
T 3ec1_A 289 RTKLEK-ADSLYANQLGELLSPPSKRYAAEF 318 (369)
T ss_dssp EEEGGG-HHHHHHHHBTTTBCSSCGGGTTTC
T ss_pred cccHHH-HHHHHHHhcCCccCCCCchhhhhc
Confidence 444422 334566677877766666654443
No 233
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=90.30 E-value=3 Score=28.21 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=51.7
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHH
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMD 109 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 109 (159)
+.+.++|+|+... ......+..+|.++++... +..+...+...+..+.+. .....-+|.|+.+..... ...
T Consensus 112 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~-~~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~~~-~~~-- 182 (237)
T 1g3q_A 112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNP-EISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSDRD-IPP-- 182 (237)
T ss_dssp CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECS-CHHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCTTC-CCH--
T ss_pred CCEEEEECCCCcC--HHHHHHHHHCCeEEEEecC-CcccHHHHHHHHHHHHhC---CCceEEEEEecCCcccch-hHH--
Confidence 4566799997643 3345667889999999876 456677776666666553 123456788999854322 222
Q ss_pred HHHHHHHcCCcEE
Q psy11289 110 AQNVARQLRIPYI 122 (159)
Q Consensus 110 ~~~~~~~~~~~~~ 122 (159)
..+.+.++.+++
T Consensus 183 -~~~~~~~~~~~~ 194 (237)
T 1g3q_A 183 -EAAEDVMEVPLL 194 (237)
T ss_dssp -HHHHHHHCSCEE
T ss_pred -HHHHHHhCccce
Confidence 344455676643
No 234
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.76 E-value=3.7 Score=28.43 Aligned_cols=88 Identities=10% Similarity=0.053 Sum_probs=53.5
Q ss_pred EEEEEEeCCCcccchHH-HHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEEeCCCCCCcCCCCH
Q psy11289 30 ARLDILDTAGQEEFSAM-REQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM-LMVGNKADLDHQRQVSS 107 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~-~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~D~~~~~~~~~ 107 (159)
+.+.|+|++|......+ .......+|.++++... +..++..+..++..+.......+.++ -+|.|+.+.. ...
T Consensus 116 yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~~ 190 (269)
T 1cp2_A 116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA----NEY 190 (269)
T ss_dssp CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS----CCH
T ss_pred CCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecC-chhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc----hhH
Confidence 45667999986432221 12223468999998876 45667777666666665543234554 5788998632 234
Q ss_pred HHHHHHHHHcCCcEE
Q psy11289 108 MDAQNVARQLRIPYI 122 (159)
Q Consensus 108 ~~~~~~~~~~~~~~~ 122 (159)
+....+.+.++.+++
T Consensus 191 ~~~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 191 ELLDAFAKELGSQLI 205 (269)
T ss_dssp HHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHcCCccc
Confidence 455666677777654
No 235
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=89.44 E-value=0.71 Score=31.88 Aligned_cols=115 Identities=10% Similarity=0.111 Sum_probs=66.0
Q ss_pred eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcC-----CCCCcEEEEEeCCCCCC--
Q psy11289 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD-----RDEFPMLMVGNKADLDH-- 101 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~~~p~ivv~nK~D~~~-- 101 (159)
.+.+.++|+|+... ......+..+|.++++... +..++..+..++..+..... ......-+|.|+.+...
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~ 189 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNP-EVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVS 189 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECS-SHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecC-ChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCccccc
Confidence 45567799997543 3455667789999999986 46677777666665544321 01246778899988421
Q ss_pred -cCCCCHHHHHHHHHHcCCcEEEe---CC--------------CCCCCHHHHHHHHHHHHHhcccc
Q psy11289 102 -QRQVSSMDAQNVARQLRIPYIEC---SA--------------KVRINVDQAFHELVRIVLLHTKQ 149 (159)
Q Consensus 102 -~~~~~~~~~~~~~~~~~~~~~~~---sa--------------~~~~~i~~~~~~l~~~~~~~~~~ 149 (159)
....+. ..+.+.++.+++.. +. .........+..+.+.+..+...
T Consensus 190 ~~~~~~~---~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~s~~~~~~~~la~~l~~~~~~ 252 (260)
T 3q9l_A 190 RGDMLSM---EDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDINADAGKAYADTVERLLGEERP 252 (260)
T ss_dssp TTSSCCH---HHHHHHHCSEEEEEEECCHHHHHHHHHTCCGGGCTTCHHHHHHHHHHHHHTTCCCC
T ss_pred cccccCH---HHHHHHhCCceEEecCCChhHHHHHHcCCCeEECCCCHHHHHHHHHHHHHhcCCCc
Confidence 112222 23444556554311 00 11234556677777777665543
No 236
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=87.79 E-value=5.5 Score=27.97 Aligned_cols=88 Identities=11% Similarity=0.108 Sum_probs=51.4
Q ss_pred EEEEEEeCCCcccchHH-HHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEEeCCCCCCcCCCCH
Q psy11289 30 ARLDILDTAGQEEFSAM-REQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM-LMVGNKADLDHQRQVSS 107 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~-~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~D~~~~~~~~~ 107 (159)
+.+.|+|++|......+ .......+|.++++... +..++..+..++..+.......+.++ -+|.|+.+.. ...
T Consensus 119 yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~~ 193 (289)
T 2afh_E 119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD----RED 193 (289)
T ss_dssp CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT----THH
T ss_pred CCEEEEeCCCccccchhhhhhhhhhCCEEEEEecC-CHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch----hHH
Confidence 45667999985432221 12223578999998875 45666666666665555432234553 4778988632 123
Q ss_pred HHHHHHHHHcCCcEE
Q psy11289 108 MDAQNVARQLRIPYI 122 (159)
Q Consensus 108 ~~~~~~~~~~~~~~~ 122 (159)
+....+.+.++.+++
T Consensus 194 ~~~~~l~~~~g~~~l 208 (289)
T 2afh_E 194 ELIIALANKLGTQMI 208 (289)
T ss_dssp HHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHcCcccc
Confidence 344556667777654
No 237
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=87.60 E-value=0.0076 Score=44.89 Aligned_cols=90 Identities=6% Similarity=-0.037 Sum_probs=49.5
Q ss_pred EEEEeCCCcccchH--------HHHHH--hhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q psy11289 32 LDILDTAGQEEFSA--------MREQY--MRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDH 101 (159)
Q Consensus 32 ~~l~D~~g~~~~~~--------~~~~~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 101 (159)
+.++||||...... ....+ .+..+.++++++....--+..+.+ + ......+.|++++.||.|..+
T Consensus 213 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~-d~l~~~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 213 SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR----F-DYVSGGRRAFTCHFSNRLTIH 287 (368)
T ss_dssp CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE----E-EEEESSSEEEEEEECTTSCEE
T ss_pred eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE----E-EEecCCCceEEEEecCccccc
Confidence 56699999854321 11122 256788888888733211111110 1 111224689999999999865
Q ss_pred cCCCCHHHHHHHHHHcCCcEEEeCCC
Q psy11289 102 QRQVSSMDAQNVARQLRIPYIECSAK 127 (159)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~sa~ 127 (159)
.... ......+.+.+|..+.+.++.
T Consensus 288 ~~~~-~~~~~~~~~~~g~~l~p~~~~ 312 (368)
T 3h2y_A 288 RTKL-EKADELYKNHAGDLLSPPTPE 312 (368)
T ss_dssp EEEH-HHHHHHHHHHBTTTBCSSCHH
T ss_pred cccH-HHHHHHHHHHhCCccCCCchh
Confidence 4433 223345556677665555543
No 238
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=85.66 E-value=9.8 Score=28.70 Aligned_cols=105 Identities=17% Similarity=0.185 Sum_probs=58.2
Q ss_pred EEEEeCCCcccchHHHHHH-----hhcCCEEEEEEECCC--hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC----
Q psy11289 32 LDILDTAGQEEFSAMREQY-----MRSGEGFLLVFSVTD--RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD---- 100 (159)
Q Consensus 32 ~~l~D~~g~~~~~~~~~~~-----~~~~~~ii~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~---- 100 (159)
+.+||++|..........+ +.+.+.+++ ++... .... .+.+ .+.. .+.|+++|.||.|+.
T Consensus 122 ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv-~la~---aL~~----~~~p~~lV~tkpdlllLDE 192 (413)
T 1tq4_A 122 VVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFKKNDI-DIAK---AISM----MKKEFYFVRTKVDSDITNE 192 (413)
T ss_dssp EEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHH-HHHH---HHHH----TTCEEEEEECCHHHHHHHH
T ss_pred eeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCccHHHH-HHHH---HHHh----cCCCeEEEEecCcccccCc
Confidence 5569999864221111222 334466665 77763 2222 1222 2222 357999999999862
Q ss_pred ---CcCCCCHHHH----HHHH----HHcC---CcEEEeCC--CCCCCHHHHHHHHHHHHHh
Q psy11289 101 ---HQRQVSSMDA----QNVA----RQLR---IPYIECSA--KVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 101 ---~~~~~~~~~~----~~~~----~~~~---~~~~~~sa--~~~~~i~~~~~~l~~~~~~ 145 (159)
.-+....++. .+++ .+.| -.++.+|+ .++.|++++.+.+...+.+
T Consensus 193 PtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 193 ADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp HTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 1122233333 2332 1223 25788999 6777899999999876643
No 239
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=85.15 E-value=6.8 Score=26.46 Aligned_cols=77 Identities=12% Similarity=0.073 Sum_probs=48.2
Q ss_pred eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHH
Q psy11289 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSM 108 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 108 (159)
.+.+.|+|+|+.... .....+..+|.++++... +..++..+......+.... -..+.+|.|+.+. ..
T Consensus 131 ~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~~~~~~---~~~~~~v~N~~~~-------~~ 197 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEP-NLNSIKTGLNIEKLAGDLG---IKKVRYVINKVRN-------IK 197 (254)
T ss_dssp CCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECS-SHHHHHHHHHHHHHHHHHT---CSCEEEEEEEECC-------HH
T ss_pred CCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCC-CHHHHHHHHHHHHHHHHcC---CccEEEEEeCCCC-------hh
Confidence 345667999875432 334556789999999987 4566666666555443332 1357788999883 23
Q ss_pred HHHHHHHHcC
Q psy11289 109 DAQNVARQLR 118 (159)
Q Consensus 109 ~~~~~~~~~~ 118 (159)
....+.+.++
T Consensus 198 ~~~~~~~~~~ 207 (254)
T 3kjh_A 198 EEKLIKKHLP 207 (254)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHHhc
Confidence 3445555555
No 240
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=84.62 E-value=7.4 Score=28.55 Aligned_cols=43 Identities=9% Similarity=0.075 Sum_probs=28.3
Q ss_pred eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHH
Q psy11289 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYK 74 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~ 74 (159)
.+.+.|+|+|..- .......+..+|.+|++...+ ..++..+..
T Consensus 153 ~yD~VIID~pP~l--~~~~~~aL~~aD~viip~~~~-~~s~~~~~~ 195 (361)
T 3pg5_A 153 RYDVIFFDVGPSL--GPFNRTVLLGCDAFVTPTATD-LFSFHAFGN 195 (361)
T ss_dssp CCSEEEEECCSCC--SHHHHHHHTTCSEEEEEECCS-HHHHHHHHH
T ss_pred CCCEEEEECCCCc--CHHHHHHHHHCCEEEEEecCC-hHHHHHHHH
Confidence 4556779999653 334555667799999999764 555444443
No 241
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=83.15 E-value=6.9 Score=27.52 Aligned_cols=83 Identities=13% Similarity=0.189 Sum_probs=45.9
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh---hcCCCCCcEE-EEEeCCCCCCcCCC
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR---VKDRDEFPML-MVGNKADLDHQRQV 105 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~---~~~~~~~p~i-vv~nK~D~~~~~~~ 105 (159)
+.+.|+|+|+.... .....+..+|.+|++...+ ..+...+...+..+.+ ... .+.+++ +|.|+.|... ..
T Consensus 155 yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~-~~~~~~gvv~n~~~~~~--~~ 228 (298)
T 2oze_A 155 YDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAE-EESTNNIQNYISYLIDLQEQFN-PGLDMIGFVPYLVDTDS--AT 228 (298)
T ss_dssp CSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGG-GCCHHHHHHHHHHHHHHHHHHC-TTCEEEEEEEEESCTTC--HH
T ss_pred CCEEEEECCCCccH--HHHHHHHHCCeEEEEecCc-HHHHHHHHHHHHHHHHHHHHhC-CCCeEEEEEEEEECCCc--HH
Confidence 45667999976543 2233444699999998764 3344444444433333 221 356644 7899998532 11
Q ss_pred CHHHHHHHHHHcC
Q psy11289 106 SSMDAQNVARQLR 118 (159)
Q Consensus 106 ~~~~~~~~~~~~~ 118 (159)
..+...++.+.++
T Consensus 229 ~~~~~~~~~~~~~ 241 (298)
T 2oze_A 229 IKSNLEELYKQHK 241 (298)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 1233444555554
No 242
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=82.97 E-value=2.6 Score=32.03 Aligned_cols=42 Identities=7% Similarity=0.095 Sum_probs=23.2
Q ss_pred CCCcEEEEEeCCCCCCcCCCCH--HHHHHHHHHcCCcEEEeCCC
Q psy11289 86 DEFPMLMVGNKADLDHQRQVSS--MDAQNVARQLRIPYIECSAK 127 (159)
Q Consensus 86 ~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~sa~ 127 (159)
.++|+|+|.||+|.....++.. +....-....|++++.+|..
T Consensus 175 ~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 175 SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 5789999999999754322110 11111122346777777753
No 243
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=80.79 E-value=6.7 Score=27.53 Aligned_cols=65 Identities=18% Similarity=0.195 Sum_probs=39.7
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCCC
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPML-MVGNKADLD 100 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~ 100 (159)
+.+.|+|+|+...... .......+|++++|..... .+...+...+..+.+ .+.+++ +|.|+.|..
T Consensus 192 yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~----~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSEN-NNKDEVKKGKELIEA----TGAKLLGVVLNRMPKD 257 (271)
T ss_dssp CSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTS-CCHHHHHHHHHHHHT----TTCEEEEEEEEEECC-
T ss_pred CCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCC-CcHHHHHHHHHHHHh----CCCCEEEEEEeCCcCC
Confidence 4466799997643221 2344567899999998753 344455444444443 345655 789999853
No 244
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=80.59 E-value=3.9 Score=30.50 Aligned_cols=53 Identities=19% Similarity=0.108 Sum_probs=38.5
Q ss_pred CCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 86 DEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 86 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
...|++++.||.|... .++...+.+ .-.++++|+..+.|++.+.+.+.+.+--
T Consensus 248 ~~~p~i~v~nKid~~~-----~eele~l~~--~~~~~~is~~~e~gLd~Li~~~y~~L~L 300 (376)
T 4a9a_A 248 RYMPAIYVLNKIDSLS-----IEELELLYR--IPNAVPISSGQDWNLDELLQVMWDRLNL 300 (376)
T ss_dssp EEECEEEEEECGGGSC-----HHHHHHHTT--STTEEECCTTTCTTHHHHHHHHHHHHCC
T ss_pred hccceEEEEecccccC-----HHHHHHHhc--ccchhhhhhhhcccchhHHHHHHHHcCC
Confidence 4579999999999643 343333222 1248999999999999999988887643
No 245
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=79.36 E-value=3.9 Score=28.81 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=25.3
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCC
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~ 65 (159)
+.+.|+|+|+.. .......+..+|.+|++...+.
T Consensus 104 yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~ 137 (286)
T 2xj4_A 104 CDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSF 137 (286)
T ss_dssp CSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSH
T ss_pred CCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc
Confidence 446679999875 3445667788999999998753
No 246
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=77.64 E-value=7.7 Score=28.23 Aligned_cols=90 Identities=19% Similarity=0.192 Sum_probs=51.1
Q ss_pred EEEEeCCCcccchH-HHHH---H--hhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCC
Q psy11289 32 LDILDTAGQEEFSA-MREQ---Y--MRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQV 105 (159)
Q Consensus 32 ~~l~D~~g~~~~~~-~~~~---~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 105 (159)
+.+.|++|...... +... . .-..|-.+++.|..... ++......+.+.. + ..+++.||.|....
T Consensus 214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~-it~iilTKlD~~a~--- 283 (328)
T 3e70_C 214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---K-IDGIILTKLDADAR--- 283 (328)
T ss_dssp EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---C-CCEEEEECGGGCSC---
T ss_pred hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---C-CCEEEEeCcCCccc---
Confidence 34589999754321 1111 1 12478899999976543 2223333343322 1 34677899995321
Q ss_pred CHHHHHHHHHHcCCcEEEeCCCCCCCHHH
Q psy11289 106 SSMDAQNVARQLRIPYIECSAKVRINVDQ 134 (159)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 134 (159)
.-.+...+...+.|+..++ +|.++++
T Consensus 284 -~G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 284 -GGAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp -CHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred -hhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 2335567777899987777 5555543
No 247
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=76.47 E-value=19 Score=26.63 Aligned_cols=67 Identities=7% Similarity=0.014 Sum_probs=36.2
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChh------hHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCC
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRN------SFEEIYKFHRQILRVKDRDEFP-MLMVGNKAD 98 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~------s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D 98 (159)
+.+.|+|+|..-. ......+..+|.+|++...+..+ .+..+.+.+..+.+......+. ++.+.|+.+
T Consensus 248 yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~ 321 (403)
T 3ez9_A 248 YDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMT 321 (403)
T ss_dssp CSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC--
T ss_pred CCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccC
Confidence 4566799997653 33445566899999999875432 1223333444444432112222 455778876
No 248
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=74.65 E-value=20 Score=27.10 Aligned_cols=85 Identities=19% Similarity=0.128 Sum_probs=46.4
Q ss_pred EEEEEEeCCCcccchH-HHHH-----HhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcC
Q psy11289 30 ARLDILDTAGQEEFSA-MREQ-----YMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQR 103 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~-~~~~-----~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 103 (159)
+.+.|.||||...... +... ..-.++.+++|.|..... ++......+... .+ ..-+|.||.|....
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~~---l~-i~GVIlTKlD~~~~- 252 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEK---VG-VTGLVLTKLDGDAR- 252 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH---TC-CCEEEEESGGGCSS-
T ss_pred CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHhc---CC-ceEEEEeCcCCccc-
Confidence 3456699999754321 1211 122589999999986432 222222223221 11 24567899986421
Q ss_pred CCCHHHHHHHHHHcCCcEEEeC
Q psy11289 104 QVSSMDAQNVARQLRIPYIECS 125 (159)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~s 125 (159)
...+...+...|.|+..+.
T Consensus 253 ---~g~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 253 ---GGAALSARHVTGKPIYFAG 271 (425)
T ss_dssp ---CHHHHHHHHHHCCCEEEEE
T ss_pred ---HHHHHHHHHHHCCCEEEEe
Confidence 1234556667788866554
No 249
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=71.09 E-value=5.6 Score=26.49 Aligned_cols=73 Identities=5% Similarity=0.074 Sum_probs=42.5
Q ss_pred HHHHhhcCCEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCc
Q psy11289 47 REQYMRSGEGFLLVFSVTD---RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIP 120 (159)
Q Consensus 47 ~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 120 (159)
+...+..+|++|++-...+ +..+.++-+|+..........++|+.+++.-.-... ........+.....+|..
T Consensus 61 l~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~G-g~~a~~~Lr~vl~~lg~~ 136 (190)
T 3u7r_A 61 LKDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIG-AALAQARLKNDLLHVGTV 136 (190)
T ss_dssp HHHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTT-THHHHHHHHHHHHTTTCE
T ss_pred HHHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhh-HHHHHHHHHHHHHHcCCE
Confidence 4456789999999965544 566777777764322222346789998875432211 111133445555666643
No 250
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=69.36 E-value=34 Score=25.85 Aligned_cols=82 Identities=18% Similarity=0.120 Sum_probs=44.9
Q ss_pred EEEEEEeCCCcccch-HHHHH-----HhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCc
Q psy11289 30 ARLDILDTAGQEEFS-AMREQ-----YMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFP-MLMVGNKADLDHQ 102 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~-~~~~~-----~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~ 102 (159)
+.+.|.||||..... .+... ....++.+++|.|+........ ....+.. ..+ .-+|.||.|....
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~---~~~~f~~-----~l~i~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAAN---TAKAFNE-----ALPLTGVVLTKVDGDAR 255 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHH---HHHHHHH-----HSCCCCEEEECTTSSSC
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHH---HHHHHhc-----cCCCeEEEEecCCCCcc
Confidence 345669999975442 22221 1346899999999875432221 1222222 223 2368999996432
Q ss_pred CCCCHHHHHHHHHHcCCcEEE
Q psy11289 103 RQVSSMDAQNVARQLRIPYIE 123 (159)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~ 123 (159)
. ..+..+....+.|+..
T Consensus 256 ~----g~~l~i~~~~~~Pi~~ 272 (433)
T 2xxa_A 256 G----GAALSIRHITGKPIKF 272 (433)
T ss_dssp C----THHHHHHHHHCCCEEE
T ss_pred H----HHHHHHHHHHCCCeEE
Confidence 2 2334566666776433
No 251
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=67.53 E-value=23 Score=23.05 Aligned_cols=61 Identities=7% Similarity=0.009 Sum_probs=38.3
Q ss_pred EEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh--cCCCCCcEEEEEeCC
Q psy11289 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV--KDRDEFPMLMVGNKA 97 (159)
Q Consensus 31 ~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~p~ivv~nK~ 97 (159)
.+.+.|..... ...+..+|++++........--..+..|+..+... ....++|+.++++--
T Consensus 36 ~v~~~~l~~~~------~~~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t~g 98 (188)
T 2ark_A 36 EVRLKHVDEAT------KEDVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSSG 98 (188)
T ss_dssp EEEEEETTTCC------HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEES
T ss_pred eEEEEEhhhCC------HHHHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEECC
Confidence 34557765433 23456789999999887644444566677665431 223578888888743
No 252
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=66.37 E-value=9 Score=30.39 Aligned_cols=65 Identities=18% Similarity=0.309 Sum_probs=33.3
Q ss_pred EEEEeCCCccc-------------chHHHHHHhhcCCEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy11289 32 LDILDTAGQEE-------------FSAMREQYMRSGEGFLLVFSVTDRN-SFEEIYKFHRQILRVKDRDEFPMLMVGNKA 97 (159)
Q Consensus 32 ~~l~D~~g~~~-------------~~~~~~~~~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 97 (159)
+.+.|.||..+ ...+...++.+..++++++...+.+ .-..+.++...+ ...+.+.|+|.||.
T Consensus 149 LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v----~~~g~rtI~VlTK~ 224 (608)
T 3szr_A 149 LTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEV----DPEGDRTIGILTKP 224 (608)
T ss_dssp EEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHH----CSSCCSEEEEEECG
T ss_pred eeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHH----hhcCCceEEEecch
Confidence 55699996322 1234455555554454444443322 111222223332 22467899999999
Q ss_pred CCC
Q psy11289 98 DLD 100 (159)
Q Consensus 98 D~~ 100 (159)
|+.
T Consensus 225 Dlv 227 (608)
T 3szr_A 225 DLV 227 (608)
T ss_dssp GGS
T ss_pred hhc
Confidence 975
No 253
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=66.35 E-value=24 Score=22.93 Aligned_cols=74 Identities=9% Similarity=0.024 Sum_probs=40.3
Q ss_pred HHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh---cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEE
Q psy11289 49 QYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV---KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122 (159)
Q Consensus 49 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 122 (159)
.-+..+|++|+........--..++.|+..+... ....++|+.++++--.......-.......+...+|+.++
T Consensus 67 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~ 143 (200)
T 2a5l_A 67 EDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVL 143 (200)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 4467899999999876633223344454444321 1235678888776543211111123345556666776543
No 254
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=64.64 E-value=24 Score=25.04 Aligned_cols=65 Identities=20% Similarity=0.018 Sum_probs=37.4
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEEeCCCCC
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM-LMVGNKADLD 100 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~D~~ 100 (159)
+.+.|+|+|+...... .......+|.+|+|..... .+...+...+..+.+. +.++ -+|.|+.|..
T Consensus 214 yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~-~~~~~~~~~~~~l~~~----~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGL-NTAKEVSLSMQRLEQA----GVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTT-SCTTHHHHHHHHHHHT----TCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCC-ChHHHHHHHHHHHHhC----CCCeEEEEEeCCccC
Confidence 3466799997654321 2334567899999987643 2333444444444442 2332 3677998854
No 255
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=63.01 E-value=9 Score=29.18 Aligned_cols=49 Identities=12% Similarity=0.175 Sum_probs=32.8
Q ss_pred EEEEeCCCccc--chHHH--------HHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 32 LDILDTAGQEE--FSAMR--------EQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 32 ~~l~D~~g~~~--~~~~~--------~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
..+||..|.+. ....+ ..++....+.++|+|.++. +......|+..+.+
T Consensus 89 ~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 89 FEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ 147 (469)
T ss_dssp GGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence 35699998843 33333 5566667898999999987 45555666665544
No 256
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=62.66 E-value=38 Score=23.91 Aligned_cols=66 Identities=14% Similarity=-0.053 Sum_probs=39.6
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD 100 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 100 (159)
+.+.|+|+|....... .......+|++|+|..... .+...+...++.+.+.. ....-+|.|+.|..
T Consensus 202 yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~-~~~~~~~~~~~~l~~~g---~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 202 YDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAV-NTLKEVETSLSRFEQNG---IPVKGVILNSIFRR 267 (286)
T ss_dssp CSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTT-SBHHHHHHHHHHHHHTT---CCCCEEEEEEECCC
T ss_pred CCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCC-CcHHHHHHHHHHHHhCC---CCEEEEEEcCcccc
Confidence 3466799997654321 3445567999999998754 33444444444444422 12344778998854
No 257
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=60.75 E-value=21 Score=23.29 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=42.5
Q ss_pred HHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh---cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEE
Q psy11289 49 QYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV---KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIE 123 (159)
Q Consensus 49 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (159)
..+..+|++|+....-...--..++.|+..+... ....++|+.++++--...............++...|+.++.
T Consensus 66 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~ 143 (199)
T 2zki_A 66 DDMRWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVP 143 (199)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECC
T ss_pred HHHHhCCEEEEECCccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeC
Confidence 3466899999998876643333344555554221 12356788877764332111222344566677777866543
No 258
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=60.56 E-value=44 Score=23.98 Aligned_cols=84 Identities=10% Similarity=0.154 Sum_probs=49.9
Q ss_pred EEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCCCCcCCCCHHH
Q psy11289 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPML-MVGNKADLDHQRQVSSMD 109 (159)
Q Consensus 31 ~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~~~~~~~~~~ 109 (159)
.+.++|+++....... ...+..||.+|++... +..++..+.+.+..+.......+.++. +|.|+.+.. .+
T Consensus 165 D~v~iD~~~~~~~~~~-~~al~aAd~viIvt~~-e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~-------~~ 235 (314)
T 3fwy_A 165 DVVIFDVLGDVVCGGF-AAPLQHADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-------DE 235 (314)
T ss_dssp SEEEEEECCSSCCGGG-GGGGGTCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------HH
T ss_pred ceEeeccCCcchhhhh-HhHHhhCCeEEEEeCC-cHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCch-------hH
Confidence 3455787755332221 1224568999888765 466777777777666655433344443 566766532 35
Q ss_pred HHHHHHHcCCcEEE
Q psy11289 110 AQNVARQLRIPYIE 123 (159)
Q Consensus 110 ~~~~~~~~~~~~~~ 123 (159)
..+++++++.+++.
T Consensus 236 v~~~a~~~~~~~lg 249 (314)
T 3fwy_A 236 VDRFCKETNFRRLA 249 (314)
T ss_dssp HHHHHHHHTCCEEE
T ss_pred HHHHHHHhCCeEEE
Confidence 56778888877543
No 259
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=58.79 E-value=16 Score=24.16 Aligned_cols=75 Identities=4% Similarity=-0.027 Sum_probs=41.3
Q ss_pred HHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh---cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEE
Q psy11289 49 QYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV---KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIE 123 (159)
Q Consensus 49 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (159)
..+..+|++|+....-...--..++.|+..+... ....++|+.++++--...............++...|+.++.
T Consensus 74 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~ 151 (211)
T 1ydg_A 74 ADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTP 151 (211)
T ss_dssp HHHHHCSEEEEEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECC
T ss_pred HHHHHCCEEEEEcCccccCccHHHHHHHHHhccccccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeC
Confidence 3466899999998776533223345555554321 12356787777664322111222234556667777766544
No 260
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=57.73 E-value=8.1 Score=27.15 Aligned_cols=64 Identities=16% Similarity=0.078 Sum_probs=33.7
Q ss_pred CCEEEEEEECC-ChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCC--HHHHHHHHHHcCCcEEE
Q psy11289 54 GEGFLLVFSVT-DRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVS--SMDAQNVARQLRIPYIE 123 (159)
Q Consensus 54 ~~~ii~v~d~~-~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~ 123 (159)
+++++++.|.. .+-+-.+ ...+..+.+ . +++++|.+|.|.....++. .+.........+++++.
T Consensus 112 al~~lllldep~~gL~~lD-~~~l~~L~~----~-~~vI~Vi~K~D~lt~~e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 112 VHCCLYFISPTGHSLRPLD-LEFMKHLSK----V-VNIIPVIAKADTMTLEEKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp CCEEEEEECCCSSSCCHHH-HHHHHHHHT----T-SEEEEEETTGGGSCHHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred eeeeeEEEecCCCcCCHHH-HHHHHHHHh----c-CcEEEEEeccccCCHHHHHHHHHHHHHHHHHcCccccC
Confidence 58888888854 2211111 122233322 3 7999999999975432211 11222334455776654
No 261
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=57.55 E-value=48 Score=23.46 Aligned_cols=86 Identities=19% Similarity=0.142 Sum_probs=46.7
Q ss_pred EEEEEEeCCCcccchH-HHHHH-----hhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcC
Q psy11289 30 ARLDILDTAGQEEFSA-MREQY-----MRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQR 103 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~-~~~~~-----~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 103 (159)
+.+.|.|+||...... ..... .-.++.+++|.|.... .+.......+... .+ ..-+|.||.|....
T Consensus 181 ~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~---~~~~~~~~~~~~~---~~-i~givlnk~d~~~~- 252 (295)
T 1ls1_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDEK---VG-VTGLVLTKLDGDAR- 252 (295)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---HHHHHHHHHHHHH---TC-CCEEEEECGGGCSS-
T ss_pred CCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc---HHHHHHHHHHhhc---CC-CCEEEEECCCCCcc-
Confidence 3456699997743321 11111 1247899999997642 1211112222221 11 23467899996432
Q ss_pred CCCHHHHHHHHHHcCCcEEEeCC
Q psy11289 104 QVSSMDAQNVARQLRIPYIECSA 126 (159)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~sa 126 (159)
...+...+...++|+..++.
T Consensus 253 ---~g~~~~~~~~~~~pi~~i~~ 272 (295)
T 1ls1_A 253 ---GGAALSARHVTGKPIYFAGV 272 (295)
T ss_dssp ---CHHHHHHHHHHCCCEEEEC-
T ss_pred ---HHHHHHHHHHHCcCEEEEeC
Confidence 23456677788999777664
No 262
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=57.35 E-value=40 Score=23.95 Aligned_cols=85 Identities=16% Similarity=0.100 Sum_probs=46.7
Q ss_pred EEEEEEeCCCcccchH-HHH---HHhh--cCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcC
Q psy11289 30 ARLDILDTAGQEEFSA-MRE---QYMR--SGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQR 103 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~-~~~---~~~~--~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 103 (159)
..+-|.||+|...... ... ..+. ..+.+++|+|.+.. ...+..+...+.. .+ ..-+|.||.|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~----l~-~~giVltk~D~~~~- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS----VP-VNQYIFTKIDETTS- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS----SC-CCEEEEECTTTCSC-
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc----CC-CCEEEEeCCCcccc-
Confidence 3456699999875432 121 2222 35788899987643 2333333222211 12 23355699996532
Q ss_pred CCCHHHHHHHHHHcCCcEEEeC
Q psy11289 104 QVSSMDAQNVARQLRIPYIECS 125 (159)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~s 125 (159)
...+...+...++|+..++
T Consensus 255 ---~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 ---LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp ---CHHHHHHHHTCSCCCSEEC
T ss_pred ---hhHHHHHHHHHCcCEEEEE
Confidence 2355667778888865544
No 263
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=56.93 E-value=6.2 Score=28.65 Aligned_cols=51 Identities=12% Similarity=0.080 Sum_probs=37.9
Q ss_pred CCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 86 DEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 86 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
...|+|+ .+|-|.+ +++..+.|++.+++++.++..+...+..+..++..++
T Consensus 79 ~~~P~II-ltrg~~~------peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~ 129 (314)
T 1ko7_A 79 PETPAII-VTRDLEP------PEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHEL 129 (314)
T ss_dssp TTCCCEE-ECTTCCC------CHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHT
T ss_pred CCCCEEE-EeCCCCC------CHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhh
Confidence 3566665 5566543 3567889999999999999998888888877766653
No 264
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=55.11 E-value=55 Score=23.41 Aligned_cols=83 Identities=22% Similarity=0.199 Sum_probs=46.4
Q ss_pred EEEEeCCCcccchH-HHH------HHh-----hcCCEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy11289 32 LDILDTAGQEEFSA-MRE------QYM-----RSGEGFLLVFSVTDR-NSFEEIYKFHRQILRVKDRDEFPMLMVGNKAD 98 (159)
Q Consensus 32 ~~l~D~~g~~~~~~-~~~------~~~-----~~~~~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 98 (159)
+.+.|+||...... +.. ..+ ..++.+++|.|.... +.+..+ ..+.+. .++ .-+|.||.|
T Consensus 189 vvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a----~~~~~~---~~i-~gvVlTk~D 260 (306)
T 1vma_A 189 VVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQA----KIFKEA---VNV-TGIILTKLD 260 (306)
T ss_dssp EEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHH----HHHHHH---SCC-CEEEEECGG
T ss_pred EEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHH----HHHHhc---CCC-CEEEEeCCC
Confidence 55699999743322 111 111 237889999998643 222222 223222 122 345679999
Q ss_pred CCCcCCCCHHHHHHHHHHcCCcEEEeCC
Q psy11289 99 LDHQRQVSSMDAQNVARQLRIPYIECSA 126 (159)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa 126 (159)
..... -.+...+...++|+..++.
T Consensus 261 ~~~~g----G~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 261 GTAKG----GITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GCSCT----THHHHHHHHHCCCEEEEEC
T ss_pred Cccch----HHHHHHHHHHCCCEEEEeC
Confidence 64322 2366778888999777654
No 265
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=54.77 E-value=27 Score=23.21 Aligned_cols=74 Identities=9% Similarity=0.002 Sum_probs=41.5
Q ss_pred HHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh--cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcE
Q psy11289 47 REQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV--KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPY 121 (159)
Q Consensus 47 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 121 (159)
+...+..+|++|++....+..---.++.|+..+... ....++|+.++++---... ........+.....+|+..
T Consensus 67 ~~~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~tsgg~~g-~~~a~~~Lr~il~~lg~~~ 142 (199)
T 4hs4_A 67 MAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIG-GARAQNHLRQSLVFLDAYV 142 (199)
T ss_dssp HHHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEECSSSSC-SHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHhCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeCCCCcc-cHHHHHHHHHHHHHcCCEE
Confidence 344478899999998776643322334445444431 1236789998887532111 1112344566666777543
No 266
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=53.51 E-value=39 Score=21.79 Aligned_cols=72 Identities=11% Similarity=0.085 Sum_probs=41.2
Q ss_pred HHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEE
Q psy11289 47 REQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIE 123 (159)
Q Consensus 47 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (159)
....+..+|++|++...-...---.++.|+..+.. ...++|+.++.+ -.... .-.....+.++...|+..+.
T Consensus 78 ~~~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~--~l~gK~~~~~~~-G~~~~--~~~~~~l~~~l~~~G~~~~~ 149 (191)
T 1t0i_A 78 WSRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYH--EWHGKPALVVSY-GGHGG--SKCNDQLQEVLHGLKMNVIG 149 (191)
T ss_dssp HHHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCST--TTTTCEEEEEEE-ETTTT--HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhCCEEEEEeceECCCCCHHHHHHHHHHHh--hcCCCEEEEEEe-CCcch--hhHHHHHHHHHHHCCCEEcc
Confidence 34456789999999988764333345556655543 235678777754 22111 11233445666677876443
No 267
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=53.37 E-value=22 Score=23.38 Aligned_cols=72 Identities=7% Similarity=0.028 Sum_probs=43.6
Q ss_pred HHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh---------cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHc
Q psy11289 47 REQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV---------KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQL 117 (159)
Q Consensus 47 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~---------~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~ 117 (159)
....+..+|++|++...-+..---.++.|+..+... ....++|+.++++--.... ... ....+.+...+
T Consensus 61 ~~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~g~-~~~-~~~l~~~l~~~ 138 (192)
T 3fvw_A 61 AREEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGASP-EEV-FEDYRSLLPFI 138 (192)
T ss_dssp HHHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC----CC-SHHHHHHHHHT
T ss_pred HHHHHHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCcch-hHH-HHHHHHHHHHc
Confidence 445578899999998776643333455666666542 1245788888876543211 122 34566777778
Q ss_pred CCc
Q psy11289 118 RIP 120 (159)
Q Consensus 118 ~~~ 120 (159)
|+.
T Consensus 139 G~~ 141 (192)
T 3fvw_A 139 RMH 141 (192)
T ss_dssp TCE
T ss_pred CCe
Confidence 865
No 268
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=53.10 E-value=26 Score=23.18 Aligned_cols=71 Identities=7% Similarity=0.071 Sum_probs=40.4
Q ss_pred HHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHH-HHHHHHHcCCc
Q psy11289 47 REQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMD-AQNVARQLRIP 120 (159)
Q Consensus 47 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~ 120 (159)
+...+..||++|++...-+..---.++.|+..+.. ....++|+.++++- .... .....+. .+.+...+|+.
T Consensus 79 ~~~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~-~~l~gK~~~~v~t~-G~~~-~~~~~~~~L~~il~~lg~~ 150 (191)
T 3k1y_A 79 ITSALSASDGLVVATPVFKASYTGLFKMFFDILDT-DALTGMPTIIAATA-GSAR-HSLVLDYALRPLLSYMRAV 150 (191)
T ss_dssp HHHHHHHCSEEEEEEECBTTBSCHHHHHHHHHSCT-TTTTTCEEEEEEEE-SSST-TTTHHHHTHHHHHHHTTCE
T ss_pred HHHHHHHCCEEEEEcCccCCcCcHHHHHHHHHhhh-hhcCCCEEEEEEeC-CCcc-hhhHHHHHHHHHHHHCCCE
Confidence 34456789999999888764333344455555432 23467898888873 2111 1111122 45666677754
No 269
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=52.55 E-value=16 Score=23.88 Aligned_cols=72 Identities=10% Similarity=0.026 Sum_probs=41.0
Q ss_pred HHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh--cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcE
Q psy11289 49 QYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV--KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPY 121 (159)
Q Consensus 49 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 121 (159)
..+..+|++|++...-...---.++.|+..+... ....++|+.++++--.-.. ........+.++...|+.+
T Consensus 68 ~~l~~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~gg~~g-~~~~~~~l~~~l~~~g~~~ 141 (193)
T 1rtt_A 68 EQIRAADALLFATPEYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGASAGRFG-TARAQYHLRQTLVFLDVHP 141 (193)
T ss_dssp HHHHHCSEEEEECCEETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEECSSTTT-THHHHHHHHHHHHHHTCEE
T ss_pred HHHHhCCEEEEEccccccCcCHHHHHHHHHhccccCcccCCCeEEEEEeCCCCCc-cHHHHHHHHHHHHHcCCEE
Confidence 3467899999997765543233455666666442 1235789888887632111 1112344556666667543
No 270
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=52.29 E-value=21 Score=23.52 Aligned_cols=50 Identities=4% Similarity=0.084 Sum_probs=33.3
Q ss_pred HHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh------------cCCCCCcEEEEEeCC
Q psy11289 48 EQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV------------KDRDEFPMLMVGNKA 97 (159)
Q Consensus 48 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~------------~~~~~~p~ivv~nK~ 97 (159)
...+..||++|+++..-.-.-=-.++.|+..+... ....+++++++.+--
T Consensus 68 ~~~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g 129 (196)
T 3lcm_A 68 RDLVTWADHLIFIFPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHN 129 (196)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECS
T ss_pred HHHHHhCCEEEEECchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCC
Confidence 34467899999999887644444566777777432 123567888777653
No 271
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=51.94 E-value=27 Score=22.59 Aligned_cols=74 Identities=5% Similarity=-0.081 Sum_probs=39.6
Q ss_pred HHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh---cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEE
Q psy11289 49 QYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV---KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIE 123 (159)
Q Consensus 49 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (159)
..+..+|++|+........--..++.|+..+... ....++|+.++++--.. ............++..+|+.++.
T Consensus 64 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~ 140 (198)
T 3b6i_A 64 QELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVP 140 (198)
T ss_dssp GGGGGCSEEEEEEEEETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECC
T ss_pred HHHHHCCEEEEEeChhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEEC
Confidence 3467899999998776533223344444443321 12356788877765432 11111223444556666765544
No 272
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=51.85 E-value=48 Score=21.80 Aligned_cols=87 Identities=13% Similarity=0.111 Sum_probs=47.2
Q ss_pred EEEEEEeCCCcccch----HHHHHHhhcC-CEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCCCCcC
Q psy11289 30 ARLDILDTAGQEEFS----AMREQYMRSG-EGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPML-MVGNKADLDHQR 103 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~----~~~~~~~~~~-~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~~~~ 103 (159)
+.+-|.|+||.-... .......... +.+++|... ...+..++...++.+.+ .+.+++ +|.|+.|.. .
T Consensus 109 yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~-~~~~~~~~~~~i~~l~~----~~~~i~gvvlN~~~~~--~ 181 (224)
T 1byi_A 109 ADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGV-KLGCINHAMLTAQVIQH----AGLTLAGWVANDVTPP--G 181 (224)
T ss_dssp CSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEEC-STTHHHHHHHHHHHHHH----TTCCEEEEEEECCSSC--C
T ss_pred CCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecC-CCCcHHHHHHHHHHHHH----CCCcEEEEEEeCCCCc--h
Confidence 445669999653210 1122233322 347777766 34566666665555542 445644 788999843 2
Q ss_pred CCCHHHHHHHHHHcCCcEEE
Q psy11289 104 QVSSMDAQNVARQLRIPYIE 123 (159)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~ 123 (159)
....+....+.+.++.+++.
T Consensus 182 ~~~~~~~~~l~~~~~~~vl~ 201 (224)
T 1byi_A 182 KRHAEYMTTLTRMIPAPLLG 201 (224)
T ss_dssp TTHHHHHHHHHHHSSSCEEE
T ss_pred hhHHHHHHHHHHHcCCCEEE
Confidence 22233344555667877654
No 273
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=50.51 E-value=87 Score=24.34 Aligned_cols=82 Identities=18% Similarity=0.171 Sum_probs=45.3
Q ss_pred EEEEeCCCcccchH-HHH---HH---hh-----cCCEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy11289 32 LDILDTAGQEEFSA-MRE---QY---MR-----SGEGFLLVFSVTDRN-SFEEIYKFHRQILRVKDRDEFPMLMVGNKAD 98 (159)
Q Consensus 32 ~~l~D~~g~~~~~~-~~~---~~---~~-----~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 98 (159)
+.|.||+|...... +.. .. .+ ..+-++++.|.+... .+.. ...+.... ++ ..+|.||.|
T Consensus 378 vVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~----ak~f~~~~---~i-tgvIlTKLD 449 (503)
T 2yhs_A 378 VLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ----AKLFHEAV---GL-TGITLTKLD 449 (503)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHH----HHHHHHHT---CC-SEEEEECGG
T ss_pred EEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHH----HHHHHhhc---CC-CEEEEEcCC
Confidence 55699999854322 111 11 11 256789999977542 2322 23333322 22 346799999
Q ss_pred CCCcCCCCHHHHHHHHHHcCCcEEEeC
Q psy11289 99 LDHQRQVSSMDAQNVARQLRIPYIECS 125 (159)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~s 125 (159)
.... --.+..++..+++++..+.
T Consensus 450 ~tak----gG~~lsi~~~~~~PI~fig 472 (503)
T 2yhs_A 450 GTAK----GGVIFSVADQFGIPIRYIG 472 (503)
T ss_dssp GCSC----CTHHHHHHHHHCCCEEEEE
T ss_pred Cccc----ccHHHHHHHHHCCCEEEEe
Confidence 5321 2245567777888876643
No 274
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=49.20 E-value=46 Score=21.87 Aligned_cols=74 Identities=9% Similarity=0.082 Sum_probs=41.1
Q ss_pred HHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh--cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEE
Q psy11289 48 EQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV--KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122 (159)
Q Consensus 48 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 122 (159)
...+..||++|++....+..---.++.|+..+... ....++|+.++++---... ........+.+...+|+.++
T Consensus 67 ~~~i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~s~g~~g-g~~a~~~Lr~~l~~lg~~v~ 142 (193)
T 3svl_A 67 AEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSSMGVIG-GARCQYHLRQILVFLDAMVM 142 (193)
T ss_dssp HHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEECSSTTT-THHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHCCEEEEEecccCCCCCHHHHHHHHHHhhcCccccCCCeEEEEEeCCCCcc-hHHHHHHHHHHHHHCCCEEc
Confidence 34467899999998776643322333444444331 2236789988886432111 11123455666667776543
No 275
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=48.95 E-value=25 Score=23.08 Aligned_cols=71 Identities=6% Similarity=0.031 Sum_probs=39.9
Q ss_pred HHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHH-HHHHHHHHcCCcEE
Q psy11289 49 QYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSM-DAQNVARQLRIPYI 122 (159)
Q Consensus 49 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~ 122 (159)
..+..+|++|++.......--..++.|+..+.. ....++|+.++++ ....... .... ..+.++..+|+.++
T Consensus 65 ~~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~-~~~~gK~~~~~~t-gg~~~~~-~a~~~~l~~~l~~~g~~~v 136 (197)
T 2vzf_A 65 DATCNADGLIVATPIYKASYTGLLKAFLDILPQ-FALAGKAALPLAT-GGSPAHV-LALDYGLRPVLHSMGVRHV 136 (197)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHTTSCT-TTTTTCEEEEEEE-ESSGGGG-GHHHHTHHHHHHTTTCSEE
T ss_pred HHHHHCCEEEEEeCccCCCCCHHHHHHHHhccc-cccCCCEEEEEEE-CCCcchh-hHHHHHHHHHHHHcCCEec
Confidence 346789999999887664322333444444322 1235789998887 3322111 1122 35666777776643
No 276
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=47.88 E-value=73 Score=23.37 Aligned_cols=34 Identities=6% Similarity=0.068 Sum_probs=23.7
Q ss_pred EEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCC
Q psy11289 30 ARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~ 65 (159)
+.+.|+|+|..-.. .....+..+|.+|++...+.
T Consensus 245 yD~ViiD~pp~~~~--~~~~~l~~aD~vliv~~p~~ 278 (398)
T 3ez2_A 245 YDFILVDSGPHLDA--FLKNALASANILFTPLPPAT 278 (398)
T ss_dssp CSEEEEEECSCCSH--HHHHHHHHCSEEEEEECCSH
T ss_pred CCEEEEeCCCCccH--HHHHHHHHCCEEEEEecCch
Confidence 44667999976532 34455668999999998754
No 277
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=47.23 E-value=63 Score=21.84 Aligned_cols=72 Identities=7% Similarity=-0.066 Sum_probs=42.7
Q ss_pred HHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc---CCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEE
Q psy11289 49 QYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK---DRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122 (159)
Q Consensus 49 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 122 (159)
.-+..||++|+....-...---.++.|+..+.... ...++|++++++--.. . ..........++...|+.++
T Consensus 75 ~~l~~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~-g-~~~~~~~l~~~l~~~G~~~v 149 (242)
T 1sqs_A 75 KELLESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESN-G-SDNVSEYLRDIFSYMGGQIL 149 (242)
T ss_dssp HHHHHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSC-C-SCCHHHHHHHHHHHTTCEEE
T ss_pred HHHHHCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCCCC-c-hhhHHHHHHHHHHHCCCeee
Confidence 34678999999998876443334556666653221 2356788877664221 1 11234456677777887643
No 278
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=46.73 E-value=78 Score=22.72 Aligned_cols=84 Identities=18% Similarity=0.141 Sum_probs=46.4
Q ss_pred EEEEEEeCCCcccchH-HHHH------Hh-----hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEeC
Q psy11289 30 ARLDILDTAGQEEFSA-MREQ------YM-----RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFP-MLMVGNK 96 (159)
Q Consensus 30 ~~~~l~D~~g~~~~~~-~~~~------~~-----~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK 96 (159)
+.+.|+||||...... +... .+ ..+|.+++|.+.... .+.+. .+.... ...+ .-+|.||
T Consensus 192 yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~----~~~~~~--~~~~i~GvVltk 263 (320)
T 1zu4_A 192 YDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVI----QAEEFS--KVADVSGIILTK 263 (320)
T ss_dssp CSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHH----HHHHHT--TTSCCCEEEEEC
T ss_pred CCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHH----HHHHHh--hcCCCcEEEEeC
Confidence 4456699999865421 1111 11 237899999998742 22222 222222 1222 3367899
Q ss_pred CCCCCcCCCCHHHHHHHHHHcCCcEEEeC
Q psy11289 97 ADLDHQRQVSSMDAQNVARQLRIPYIECS 125 (159)
Q Consensus 97 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 125 (159)
.|..... ..+.......++|+..+.
T Consensus 264 ~d~~~~~----g~~~~~~~~~~~Pi~~i~ 288 (320)
T 1zu4_A 264 MDSTSKG----GIGLAIKELLNIPIKMIG 288 (320)
T ss_dssp GGGCSCT----THHHHHHHHHCCCEEEEE
T ss_pred CCCCCch----hHHHHHHHHHCcCEEEEe
Confidence 9964322 245566777898865554
No 279
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=44.91 E-value=33 Score=23.98 Aligned_cols=47 Identities=2% Similarity=-0.032 Sum_probs=32.1
Q ss_pred hhcCCEEEEEEECCChhhHHHHHHHHHHHHhh------------cCCCCCcEEEEEeCC
Q psy11289 51 MRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV------------KDRDEFPMLMVGNKA 97 (159)
Q Consensus 51 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~------------~~~~~~p~ivv~nK~ 97 (159)
+..||++|+.+.+-.-.-=-.++.|+..+... ....+++++++.+--
T Consensus 91 l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~G 149 (273)
T 1d4a_A 91 LEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTG 149 (273)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECS
T ss_pred HHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCC
Confidence 67899999999887644334467788877542 123567888777643
No 280
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=44.35 E-value=70 Score=21.51 Aligned_cols=61 Identities=23% Similarity=0.150 Sum_probs=39.5
Q ss_pred EEeCCCcccchHHHHHH-hhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEE
Q psy11289 34 ILDTAGQEEFSAMREQY-MRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVG 94 (159)
Q Consensus 34 l~D~~g~~~~~~~~~~~-~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~ 94 (159)
+.|.+-.-....+.... -.++|++.+.++.....+...+.+++..+.+.....++|+++-|
T Consensus 123 Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG 184 (215)
T 3ezx_A 123 IVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFGG 184 (215)
T ss_dssp EEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEES
T ss_pred EEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEEEEEC
Confidence 36665443333333333 34789888888888888888888888888776422356766544
No 281
>2pd2_A Hypothetical protein ST0148; structural genomics, NPPSFA, national project on protein STR and functional analyses; 2.06A {Sulfolobus tokodaii}
Probab=44.31 E-value=45 Score=19.33 Aligned_cols=63 Identities=8% Similarity=0.056 Sum_probs=32.7
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeC--CCCCCcCCCCHHHHHHHHHHcCCcEEEeC
Q psy11289 60 VFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNK--ADLDHQRQVSSMDAQNVARQLRIPYIECS 125 (159)
Q Consensus 60 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK--~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 125 (159)
+|++++++.+..+.+....+.+.. ++..+.++.+- ........ +..+..+.+.+.|+.++-|.
T Consensus 4 v~~v~d~~~~~~al~~~~n~~~~~--~~~~v~vv~~g~gv~~~~~~~-~~~~~i~~l~~~gV~~~~C~ 68 (108)
T 2pd2_A 4 VVQIKDFDKVPQALRSVINLYNDI--KDAEIEVVLHQSAIKALLKDS-DTRSIIEDLIKKNILIVGCE 68 (108)
T ss_dssp EEEECCGGGHHHHHHHHHHHHHHS--TTCEEEEEECGGGGGGGBTTC-TTHHHHHHHHHTTCEEEEEH
T ss_pred EEEeCChHHHHHHHHHHHHHHhhC--CCCeEEEEEcChHHHHHHcCc-hHHHHHHHHHHCcCEEEecH
Confidence 455557887776666666665542 34455555432 11111111 23344444455788777764
No 282
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=44.21 E-value=18 Score=23.37 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=26.0
Q ss_pred CCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEe
Q psy11289 86 DEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIEC 124 (159)
Q Consensus 86 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (159)
...|+|++|......+ ..++..++++..++|++.+
T Consensus 34 AkrPvil~G~g~~~~~----a~~~l~~lae~~~iPV~~t 68 (170)
T 3cf4_G 34 AKRPLLMVGTLALDPE----LLDRVVKISKAANIPIAAT 68 (170)
T ss_dssp CSSEEEEECSTTCCHH----HHHHHHHHHHHHTCCEEEC
T ss_pred CCCCEEEECCCccchh----HHHHHHHHHHHhCCCEEEC
Confidence 5679999997765321 2457789999999998765
No 283
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=44.15 E-value=44 Score=21.27 Aligned_cols=74 Identities=9% Similarity=0.015 Sum_probs=41.2
Q ss_pred HHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEE
Q psy11289 48 EQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIE 123 (159)
Q Consensus 48 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (159)
...+..+|++|++...-+..---.++.|+..+... ...++|+.++++--.... ..-.....+.....+|+.++.
T Consensus 58 ~~~i~~aD~ii~~tP~y~~~~p~~lk~~lD~l~~~-~~~gK~~~~~~~sgg~~g-~~~a~~~l~~~l~~~g~~~v~ 131 (174)
T 3gfs_A 58 KQRVTKADAIVLLSPEYHSGMSGALKNALDFLSSE-QFKYKPVALLAVAGGGDG-GINALNNMRTVMRGVYANVIP 131 (174)
T ss_dssp HHHHHHCSSEEEEEECSSSSCCHHHHHHHHTCCHH-HHTTCEEEEEEECCSTTC-SHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHCCEEEEEcCCcCCCCCHHHHHHHHHhCHh-hhCCCcEEEEEECCCChh-HHHHHHHHHHHHHHcCCEEec
Confidence 34467899999999887643333334444333221 125688888876432211 111234556677777876443
No 284
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=43.72 E-value=74 Score=24.80 Aligned_cols=57 Identities=9% Similarity=0.032 Sum_probs=38.8
Q ss_pred CCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCC--CCCCCHHHHHHHHHHHHH
Q psy11289 86 DEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSA--KVRINVDQAFHELVRIVL 144 (159)
Q Consensus 86 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa--~~~~~i~~~~~~l~~~~~ 144 (159)
-+.|++|..|+.....+. ..+..+++|++.|+.+..+.. +=|.|-.++-+.+++.+.
T Consensus 359 fGvpvVVaiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~s~~wa~GG~G~~~LA~~Vv~~~e 417 (543)
T 3do6_A 359 FNLPVVVALNRFSTDTEK--EIAYVVKECEKLGVRVAVSEVFKKGSEGGVELAKAVAEAAK 417 (543)
T ss_dssp TTCCEEEEEECCTTCCHH--HHHHHHHHHHTTTCEEEEECHHHHGGGGSHHHHHHHHHHCC
T ss_pred cCCCeEEEEeCCCCCCHH--HHHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHhc
Confidence 478999999998643222 235567889999997655443 346777777777776653
No 285
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=43.55 E-value=65 Score=20.93 Aligned_cols=64 Identities=5% Similarity=0.038 Sum_probs=38.5
Q ss_pred EEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh-------cCCCCCcEEEEEeC
Q psy11289 32 LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV-------KDRDEFPMLMVGNK 96 (159)
Q Consensus 32 ~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~-------~~~~~~p~ivv~nK 96 (159)
+.+.|......... ....+..||++|+.+.+-.-.-=-.++.|+..+... ....+++++++.+-
T Consensus 31 v~v~dL~~~~D~~~-~~~~l~~aD~iV~~~P~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~ 101 (177)
T 3ha2_A 31 VTWHPLVADFNVEQ-EQSLLLQNDRIILEFPLYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVST 101 (177)
T ss_dssp EEEEECCTTCCHHH-HHHHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEE
T ss_pred EEEEECCCcccHHH-HHHHHHhCCEEEEECChhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeC
Confidence 34467665333322 334567899999999886644334456677776432 12356777776654
No 286
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=43.29 E-value=26 Score=22.41 Aligned_cols=74 Identities=3% Similarity=-0.063 Sum_probs=39.9
Q ss_pred HHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc----------CCCCCcEEEEEeCCCCCC-cCCCCHHHHHHHHHHc
Q psy11289 49 QYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK----------DRDEFPMLMVGNKADLDH-QRQVSSMDAQNVARQL 117 (159)
Q Consensus 49 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~----------~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~ 117 (159)
..+..+|++|+.+..-...---.++.|+..+.... ...+++++++++--.... .........+.++...
T Consensus 67 ~~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~~ 146 (184)
T 1rli_A 67 ERILQCHILIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFM 146 (184)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHhCCEEEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHHc
Confidence 44678999999998876433334455555543211 114578888776322100 0011123445566677
Q ss_pred CCcEE
Q psy11289 118 RIPYI 122 (159)
Q Consensus 118 ~~~~~ 122 (159)
|+.++
T Consensus 147 G~~~~ 151 (184)
T 1rli_A 147 GMSFK 151 (184)
T ss_dssp TCEEE
T ss_pred CCccc
Confidence 87644
No 287
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=42.67 E-value=30 Score=23.95 Aligned_cols=72 Identities=8% Similarity=-0.057 Sum_probs=41.4
Q ss_pred HHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh----cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCc
Q psy11289 47 REQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV----KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIP 120 (159)
Q Consensus 47 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 120 (159)
+...+..||++|++....+..---.++.|+..+... ....++|+.++++--.. . ........+.+...+|+.
T Consensus 92 l~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~-g-g~~a~~~Lr~~l~~lg~~ 167 (247)
T 2q62_A 92 LRELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGS-Q-SFNAVNQMRILGRWMRMI 167 (247)
T ss_dssp HHHHHHHCSEEEEEEECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSS-C-CCHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHCCEEEEEeCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCc-c-HHHHHHHHHHHHHHCCCE
Confidence 344567899999999887643333444455444322 12357898888874221 1 112234556666677754
No 288
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=42.40 E-value=53 Score=19.57 Aligned_cols=77 Identities=6% Similarity=0.098 Sum_probs=39.7
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCH
Q psy11289 53 SGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINV 132 (159)
Q Consensus 53 ~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 132 (159)
..|++|+=++..+.+.++- +..+.+......+|+|++....+ ... ...+...|+.-+-.-.. +.
T Consensus 52 ~~dlii~d~~l~~~~g~~~----~~~l~~~~~~~~~pii~ls~~~~--------~~~-~~~~~~~g~~~~l~kp~---~~ 115 (147)
T 2zay_A 52 HPHLIITEANMPKISGMDL----FNSLKKNPQTASIPVIALSGRAT--------AKE-EAQLLDMGFIDFIAKPV---NA 115 (147)
T ss_dssp CCSEEEEESCCSSSCHHHH----HHHHHTSTTTTTSCEEEEESSCC--------HHH-HHHHHHHTCSEEEESSC---CH
T ss_pred CCCEEEEcCCCCCCCHHHH----HHHHHcCcccCCCCEEEEeCCCC--------HHH-HHHHHhCCCCEEEeCCC---CH
Confidence 4677777555444444433 33444422235789888876654 222 23344567664444333 45
Q ss_pred HHHHHHHHHHHHh
Q psy11289 133 DQAFHELVRIVLL 145 (159)
Q Consensus 133 ~~~~~~l~~~~~~ 145 (159)
.++...+...+..
T Consensus 116 ~~L~~~i~~~~~~ 128 (147)
T 2zay_A 116 IRLSARIKRVLKL 128 (147)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5665555554433
No 289
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=42.26 E-value=14 Score=28.87 Aligned_cols=58 Identities=9% Similarity=-0.111 Sum_probs=39.9
Q ss_pred CCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 86 DEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 86 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
-+.|++|..|+.....+. ..+..+++|++.|+.+..+=++=|.|-.++-+.+++.+.+
T Consensus 373 fGvpvVVaiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~wa~GG~G~~~LA~~Vv~~~~~ 430 (557)
T 3pzx_A 373 FGVPAVVAINAFPTDTEA--ELNLLYELCAKAGAEVALSWAKGGEGGLELARKVLQTLES 430 (557)
T ss_dssp TTCCEEEEEECCTTCCHH--HHHHHHHHCCSSEEEEECHHHHGGGGGHHHHHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCCCHH--HHHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHHhc
Confidence 578999999998643211 1344566777778766555455577888888888887754
No 290
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=42.19 E-value=61 Score=21.60 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=31.7
Q ss_pred hHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy11289 44 SAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKAD 98 (159)
Q Consensus 44 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 98 (159)
......-++++..+|++..-.-..+ .-..| +|....+..++|+|+|-...+
T Consensus 70 KrrLReRI~~Sk~vIllIs~~T~~s--~~v~w--EIe~Ai~~~~~PII~Vy~~~~ 120 (189)
T 3hyn_A 70 KPRLHTRLDNSKNIILFLSSITANS--RALRE--EMNYGIGTKGLPVIVIYPDYD 120 (189)
T ss_dssp HHHHHHHHHTEEEEEEECCTTCCCC--HHHHH--HHHHHTTTTCCCEEEEETTCC
T ss_pred HHHHHHHHHhcCcEEEEEecCcccc--chhHH--HHHHHHHhcCCcEEEEECCcc
Confidence 3344555778888888886654433 13344 566655347899998865533
No 291
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=40.96 E-value=71 Score=20.64 Aligned_cols=40 Identities=5% Similarity=0.032 Sum_probs=25.2
Q ss_pred HHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEE
Q psy11289 49 QYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVG 94 (159)
Q Consensus 49 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~ 94 (159)
..++.||++|.++|..++++--... +-. .+. .++|++++-
T Consensus 77 ~~i~~aD~vVA~ldg~~~D~GTa~E--iGy--A~a--lgKPVv~l~ 116 (167)
T 1s2d_A 77 TGISNATCGVFLYDMDQLDDGSAFX--IGF--MRA--MHKPVILVP 116 (167)
T ss_dssp HHHHHCSEEEEEEESSSCCHHHHHH--HHH--HHH--TTCCEEEEE
T ss_pred HHHHhCCEEEEECCCCCCCCCceee--hhh--Hhh--CCCeEEEEE
Confidence 3368999999999977665543322 011 111 578998874
No 292
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=40.76 E-value=31 Score=22.83 Aligned_cols=49 Identities=8% Similarity=0.106 Sum_probs=32.4
Q ss_pred HHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh--------cCCCCCcEEEEEeC
Q psy11289 48 EQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV--------KDRDEFPMLMVGNK 96 (159)
Q Consensus 48 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~--------~~~~~~p~ivv~nK 96 (159)
...+..||++|+.+.+-.-.-=-.++.|+..+... ....+++++++.+-
T Consensus 53 ~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~ 109 (192)
T 3f2v_A 53 QKLIETHDSLVWQFPIYWFNCPPLLKQWLDEVLTYGWAYGSKGKALKGRKIALAVSL 109 (192)
T ss_dssp HHHHHTSSSEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEE
T ss_pred HHHHHhCCEEEEEcChhhcCCCHHHHHHHHHHhhcCccccCCCCCCCCCEEEEEEeC
Confidence 34567899999999887644334566788887542 12346777776654
No 293
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=40.34 E-value=33 Score=20.59 Aligned_cols=68 Identities=10% Similarity=-0.004 Sum_probs=38.8
Q ss_pred HhhcCCEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEE
Q psy11289 50 YMRSGEGFLLVFSVTDRNSFEE--IYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122 (159)
Q Consensus 50 ~~~~~~~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 122 (159)
.+..+|+++++.......-... +..++..+.. ...++++.++++--.. ..-............|..++
T Consensus 43 ~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~--~l~~k~~~~~~t~g~~---~~~~~~~l~~~l~~~g~~~~ 112 (137)
T 2fz5_A 43 DVASKDVILLGCPAMGSEELEDSVVEPFFTDLAP--KLKGKKVGLFGSYGWG---SGEWMDAWKQRTEDTGATVI 112 (137)
T ss_dssp HHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGG--GCSSCEEEEEEEESSC---CSHHHHHHHHHHHHTTCEEE
T ss_pred HHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhh--hcCCCEEEEEEecCCC---CchHHHHHHHHHHHCCCEEc
Confidence 3567899999987653221112 4555555543 2357888888874221 11124455666667787644
No 294
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=40.22 E-value=30 Score=25.96 Aligned_cols=43 Identities=12% Similarity=0.092 Sum_probs=26.5
Q ss_pred CCCcEEEEEeCCC--CCCcCCCCHHHHHHHHHH--cCCcEEEeCCCC
Q psy11289 86 DEFPMLMVGNKAD--LDHQRQVSSMDAQNVARQ--LRIPYIECSAKV 128 (159)
Q Consensus 86 ~~~p~ivv~nK~D--~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~ 128 (159)
...|++.++|+.+ ..+....-.+...+++.. .+.+++.+||..
T Consensus 221 t~KPviy~~Nv~e~~~~~~~n~~~~~v~~~~~~~~~~~~~v~~sa~~ 267 (396)
T 2ohf_A 221 TSKPMVYLVNLSEKDYIRKKNKWLIKIKEWVDKYDPGALVIPFSGAL 267 (396)
T ss_dssp GGSCEEEEEECCHHHHHHTCCHHHHHHHHHHHHHSTTCEEEEECHHH
T ss_pred hCCceEEEEEecHHHhcccccHHHHHHHHHHHhhCCCCeEEEEEcHH
Confidence 4589999999974 221111112344555554 367899999874
No 295
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=38.11 E-value=47 Score=18.99 Aligned_cols=20 Identities=5% Similarity=0.215 Sum_probs=14.0
Q ss_pred CEEEEEEECCChhhHHHHHH
Q psy11289 55 EGFLLVFSVTDRNSFEEIYK 74 (159)
Q Consensus 55 ~~ii~v~d~~~~~s~~~~~~ 74 (159)
.-++++||++++.....+.+
T Consensus 4 M~~lV~YDI~~~kr~~kv~k 23 (90)
T 1zpw_X 4 RLYAVAYDIPDDTRRVKLAN 23 (90)
T ss_dssp EEEEEEEECCCHHHHHHHHH
T ss_pred eEEEEEEeCCChHHHHHHHH
Confidence 35899999998755555443
No 296
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=37.41 E-value=49 Score=22.46 Aligned_cols=47 Identities=9% Similarity=-0.014 Sum_probs=31.5
Q ss_pred hhcCCEEEEEEECCChhhHHHHHHHHHHHHhh------------cCCCCCcEEEEEeCC
Q psy11289 51 MRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV------------KDRDEFPMLMVGNKA 97 (159)
Q Consensus 51 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~------------~~~~~~p~ivv~nK~ 97 (159)
+..+|++|+.+..-...-=-.++.|+..+... ....+++++++.+--
T Consensus 90 l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g 148 (228)
T 3tem_A 90 VREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTG 148 (228)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECS
T ss_pred HHhCCEEEEECChhhcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCC
Confidence 67899999999886644334556777776432 123567888776654
No 297
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=37.09 E-value=70 Score=19.39 Aligned_cols=77 Identities=6% Similarity=-0.016 Sum_probs=39.6
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCH
Q psy11289 53 SGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINV 132 (159)
Q Consensus 53 ~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 132 (159)
..|++|+=+.+.+.+.++-+ ..+.+....+.+|+|++....+ .+ ....+...|+.-+-.-. .+.
T Consensus 51 ~~dlii~D~~l~~~~g~~~~----~~lr~~~~~~~~pii~~s~~~~--------~~-~~~~~~~~g~~~~l~KP---~~~ 114 (154)
T 3gt7_A 51 RPDLIISDVLMPEMDGYALC----RWLKGQPDLRTIPVILLTILSD--------PR-DVVRSLECGADDFITKP---CKD 114 (154)
T ss_dssp CCSEEEEESCCSSSCHHHHH----HHHHHSTTTTTSCEEEEECCCS--------HH-HHHHHHHHCCSEEEESS---CCH
T ss_pred CCCEEEEeCCCCCCCHHHHH----HHHHhCCCcCCCCEEEEECCCC--------hH-HHHHHHHCCCCEEEeCC---CCH
Confidence 46776665544444444433 3344433235778888775554 22 22334456765443333 345
Q ss_pred HHHHHHHHHHHHh
Q psy11289 133 DQAFHELVRIVLL 145 (159)
Q Consensus 133 ~~~~~~l~~~~~~ 145 (159)
.++...+-..+..
T Consensus 115 ~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 115 VVLASHVKRLLSG 127 (154)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666655555443
No 298
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=37.00 E-value=86 Score=20.42 Aligned_cols=72 Identities=7% Similarity=0.021 Sum_probs=41.9
Q ss_pred HhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh------------cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHc
Q psy11289 50 YMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV------------KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQL 117 (159)
Q Consensus 50 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~------------~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~ 117 (159)
.+..+|++|+++.+-...---.++.|+..+... ....+++++++.+--.............+.+....
T Consensus 91 ~l~~aD~iv~~~P~y~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~l~~~~~~~ 170 (208)
T 2hpv_A 91 QFLSADKVVIANPMWNLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDFASQYIKAILNFI 170 (208)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSCSHHHHHHHHHHHHT
T ss_pred HHHhCCEEEEEeccccCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCcchHHHHHHHHHHhC
Confidence 367899999999887644444566777776541 11356788877653321111111123345566777
Q ss_pred CCcE
Q psy11289 118 RIPY 121 (159)
Q Consensus 118 ~~~~ 121 (159)
|+..
T Consensus 171 G~~~ 174 (208)
T 2hpv_A 171 GVDQ 174 (208)
T ss_dssp TCCE
T ss_pred CCCe
Confidence 8764
No 299
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=36.37 E-value=56 Score=18.80 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=12.9
Q ss_pred CEEEEEEECCChhhHHHH
Q psy11289 55 EGFLLVFSVTDRNSFEEI 72 (159)
Q Consensus 55 ~~ii~v~d~~~~~s~~~~ 72 (159)
.-++++||+++......+
T Consensus 4 M~vlV~YDI~~~krr~kv 21 (91)
T 3exc_X 4 MKLLVVYDVSDDSKRNKL 21 (91)
T ss_dssp CEEEEEEECCSHHHHHHH
T ss_pred eEEEEEEeCCCchHHHHH
Confidence 568999999987544443
No 300
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=35.47 E-value=95 Score=20.47 Aligned_cols=48 Identities=8% Similarity=0.017 Sum_probs=29.0
Q ss_pred EEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHH
Q psy11289 32 LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQIL 80 (159)
Q Consensus 32 ~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~ 80 (159)
+.+.|......... ....+..||++|+.+.+-.-.-=-.++.|+..+.
T Consensus 50 v~~~dL~~~~d~~~-~~~~l~~AD~iV~~~P~y~~s~pa~LK~~iDrv~ 97 (204)
T 2amj_A 50 VRIVRADSDYDVKA-EVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVF 97 (204)
T ss_dssp EEEEESSSCCCHHH-HHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHH
T ss_pred EEEEeCCccccHHH-HHHHHHhCCEEEEECCccccCCCHHHHHHHHHHh
Confidence 44466654333333 3345678999999998876433334556666653
No 301
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=35.14 E-value=86 Score=21.50 Aligned_cols=55 Identities=11% Similarity=0.262 Sum_probs=28.0
Q ss_pred EEEeCCCcccchHHHHHHh-hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy11289 33 DILDTAGQEEFSAMREQYM-RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKAD 98 (159)
Q Consensus 33 ~l~D~~g~~~~~~~~~~~~-~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 98 (159)
.+.++.+.+.......... +++||+|++-...+.+. +..+.. .++|+|++....+
T Consensus 44 ~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~-------~~~l~~----~~iPvV~~~~~~~ 99 (294)
T 3qk7_A 44 LLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPEDFR-------LQYLQK----QNFPFLALGRSHL 99 (294)
T ss_dssp EEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSCHH-------HHHHHH----TTCCEEEESCCCC
T ss_pred EEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCChHH-------HHHHHh----CCCCEEEECCCCC
Confidence 3344443333333444443 47999988643222211 222222 5689998876543
No 302
>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
Probab=34.42 E-value=1.5e+02 Score=22.59 Aligned_cols=95 Identities=11% Similarity=0.179 Sum_probs=57.3
Q ss_pred CCeeEEEEEEeCCCcccchHHHHHH----------hhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEe
Q psy11289 26 DDIPARLDILDTAGQEEFSAMREQY----------MRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGN 95 (159)
Q Consensus 26 ~~~~~~~~l~D~~g~~~~~~~~~~~----------~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~n 95 (159)
|...+-+.+||+...+........+ .-++|.+.+-....+++.+..+ .+.+++. .+.|+++...
T Consensus 90 n~p~ia~~V~D~~~e~~~~~~~~~~~~~~~~rvg~~~~~D~ial~~~s~dpe~~~~v---Vk~V~e~---~dvPL~IDS~ 163 (446)
T 4djd_C 90 HETAIAIQVSDNLSSEELKAKVEAINGLNFDRVGQHYTIQAIAIRHDADDPAAFKAA---VASVAAA---TQLNLVLMAD 163 (446)
T ss_dssp SCCEEEEEEETTSCHHHHHHHHHHHTTCCEEETTEEECCCEEEEECCSSSTHHHHHH---HHHHHTT---CCSEEEEECS
T ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHHHHHHhccCcEEEEEeCCCCHHHHHHH---HHHHHHh---CCCCEEEecC
Confidence 4455778889997765444433333 1257888888888888666554 3444442 4678777653
Q ss_pred CCCCC---------------CcCCCCHHHHHHHHHHcCCcEEEeCC
Q psy11289 96 KADLD---------------HQRQVSSMDAQNVARQLRIPYIECSA 126 (159)
Q Consensus 96 K~D~~---------------~~~~~~~~~~~~~~~~~~~~~~~~sa 126 (159)
+.+.. ....-..+....++.+++++++-.+.
T Consensus 164 dpevleaALea~a~~~plI~sat~dn~e~m~~lAa~y~~pVi~~~~ 209 (446)
T 4djd_C 164 DPDVLKEALAGVADRKPLLYAATGANYEAMTALAKENNCPLAVYGN 209 (446)
T ss_dssp CHHHHHHHHGGGGGGCCEEEEECTTTHHHHHHHHHHTTCCEEEECS
T ss_pred CHHHHHHHHHhhcCcCCeeEecchhhHHHHHHHHHHcCCcEEEEec
Confidence 33220 00112345667788888888776654
No 303
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=34.09 E-value=1.1e+02 Score=20.92 Aligned_cols=58 Identities=12% Similarity=0.198 Sum_probs=29.1
Q ss_pred EEEEEEeCCCcccc-hHHHHHH-hhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy11289 30 ARLDILDTAGQEEF-SAMREQY-MRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKAD 98 (159)
Q Consensus 30 ~~~~l~D~~g~~~~-~~~~~~~-~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 98 (159)
+.+.+.++.+.... ....... .+++||+|++ ....... .+..+.+ .++|+|++....+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~-~~~~~~~------~~~~l~~----~~iPvV~i~~~~~ 100 (288)
T 3gv0_A 41 YHLVVTPHIHAKDSMVPIRYILETGSADGVIIS-KIEPNDP------RVRFMTE----RNMPFVTHGRSDM 100 (288)
T ss_dssp CEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEE-SCCTTCH------HHHHHHH----TTCCEEEESCCCS
T ss_pred CEEEEecCCcchhHHHHHHHHHHcCCccEEEEe-cCCCCcH------HHHHHhh----CCCCEEEECCcCC
Confidence 34445655543322 2233333 2689999975 2222111 1222322 5789998876654
No 304
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=33.93 E-value=51 Score=19.86 Aligned_cols=67 Identities=12% Similarity=-0.013 Sum_probs=38.1
Q ss_pred HhhcCCEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcE
Q psy11289 50 YMRSGEGFLLVFSVTDRNSFE--EIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPY 121 (159)
Q Consensus 50 ~~~~~~~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 121 (159)
-+.++|++++........... .+..++..+... ..++++.++++--.. . .-.........+..|+.+
T Consensus 42 ~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~--l~~k~~~~f~t~g~~-~--~~a~~~l~~~l~~~G~~~ 110 (138)
T 5nul_A 42 ELLNEDILILGCSAMTDEVLEESEFEPFIEEISTK--ISGKKVALFGSYGWG-D--GKWMRDFEERMNGYGCVV 110 (138)
T ss_dssp HHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG--CTTCEEEEEEEESSS-C--SHHHHHHHHHHHHTTCEE
T ss_pred HHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh--cCCCEEEEEEecCCC-C--ChHHHHHHHHHHHCCCEE
Confidence 356789999998764422111 344555555443 367888888874221 1 112345566666777543
No 305
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=32.55 E-value=84 Score=22.89 Aligned_cols=50 Identities=10% Similarity=-0.032 Sum_probs=30.2
Q ss_pred eEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh
Q psy11289 29 PARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR 81 (159)
Q Consensus 29 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 81 (159)
.+.+.++|+|.... ......+..+|.++++...+ +.+...+......+..
T Consensus 259 ~yD~VIID~p~~~~--~~~~~~l~~aD~vivv~~~~-~~s~~~l~~~~~~l~~ 308 (373)
T 3fkq_A 259 NYDEIIVDLPFSLE--IEKLKLLSKAWRIIVVNDGS-QLSNYKFMRAYESVVL 308 (373)
T ss_dssp CCSEEEEECCCCCC--HHHHHHHTTCSEEEEEECCC-HHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEecCC-chHHHHHHHHHHHHHH
Confidence 34566799984432 23456678899999998664 4454444444444433
No 306
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2
Probab=32.53 E-value=69 Score=20.99 Aligned_cols=15 Identities=20% Similarity=0.724 Sum_probs=8.6
Q ss_pred HhhcCCEEEEEEECC
Q psy11289 50 YMRSGEGFLLVFSVT 64 (159)
Q Consensus 50 ~~~~~~~ii~v~d~~ 64 (159)
.+.++|++|.+||..
T Consensus 127 mvd~sD~liavyDg~ 141 (181)
T 2nx2_A 127 FIDKSDGLLLLYDPE 141 (181)
T ss_dssp HHHHSSEEEEECCTT
T ss_pred HHHHCCEEEEEEcCC
Confidence 345566666666643
No 307
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=32.38 E-value=76 Score=18.42 Aligned_cols=75 Identities=15% Similarity=0.206 Sum_probs=37.1
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCH
Q psy11289 53 SGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINV 132 (159)
Q Consensus 53 ~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 132 (159)
..|.+++=+++.+.+.++-+ ..+.+....++.|+|++....+ .+. ...+...|+.-+-.-.. +.
T Consensus 55 ~~dlvi~d~~~~~~~g~~~~----~~l~~~~~~~~~pii~ls~~~~--------~~~-~~~~~~~g~~~~l~kP~---~~ 118 (140)
T 1k68_A 55 RPDLILLXLNLPKKDGREVL----AEIKSDPTLKRIPVVVLSTSIN--------EDD-IFHSYDLHVNCYITKSA---NL 118 (140)
T ss_dssp CCSEEEECSSCSSSCHHHHH----HHHHHSTTGGGSCEEEEESCCC--------HHH-HHHHHHTTCSEEEECCS---SH
T ss_pred CCcEEEEecCCCcccHHHHH----HHHHcCcccccccEEEEecCCc--------HHH-HHHHHHhchhheecCCC---CH
Confidence 46766664444443444332 3333322224678888876655 222 23344567664443333 45
Q ss_pred HHHHHHHHHHH
Q psy11289 133 DQAFHELVRIV 143 (159)
Q Consensus 133 ~~~~~~l~~~~ 143 (159)
.++...+-..+
T Consensus 119 ~~l~~~i~~~~ 129 (140)
T 1k68_A 119 SQLFQIVKGIE 129 (140)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555444443
No 308
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=32.12 E-value=80 Score=18.60 Aligned_cols=74 Identities=7% Similarity=0.054 Sum_probs=39.1
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCH
Q psy11289 53 SGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINV 132 (159)
Q Consensus 53 ~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 132 (159)
..|++++=++..+.+.++-+ ..+.+.. +..|+|++....+ .+ ....+...|+.-+-.-. .+.
T Consensus 49 ~~dlvi~d~~l~~~~g~~~~----~~l~~~~--~~~~ii~ls~~~~--------~~-~~~~~~~~g~~~~l~kp---~~~ 110 (143)
T 3jte_A 49 SIDVVITDMKMPKLSGMDIL----REIKKIT--PHMAVIILTGHGD--------LD-NAILAMKEGAFEYLRKP---VTA 110 (143)
T ss_dssp TCCEEEEESCCSSSCHHHHH----HHHHHHC--TTCEEEEEECTTC--------HH-HHHHHHHTTCSEEEESS---CCH
T ss_pred CCCEEEEeCCCCCCcHHHHH----HHHHHhC--CCCeEEEEECCCC--------HH-HHHHHHHhCcceeEeCC---CCH
Confidence 56777775555554445433 2333332 5678888776555 22 23334556766443333 345
Q ss_pred HHHHHHHHHHHH
Q psy11289 133 DQAFHELVRIVL 144 (159)
Q Consensus 133 ~~~~~~l~~~~~ 144 (159)
.++...+...+.
T Consensus 111 ~~l~~~l~~~~~ 122 (143)
T 3jte_A 111 QDLSIAINNAIN 122 (143)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566555554443
No 309
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=31.68 E-value=37 Score=22.13 Aligned_cols=72 Identities=10% Similarity=-0.053 Sum_probs=36.9
Q ss_pred HHhhcCCEEEEEEECCChhhHHHHHHHHHHHHh---hcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCc
Q psy11289 49 QYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILR---VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIP 120 (159)
Q Consensus 49 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~---~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 120 (159)
..+..+|++|+........--..+..|+..+.. .....++|+.++++--.......-.......+...+|+.
T Consensus 50 ~~l~~~D~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~G~~ 124 (193)
T 3d7n_A 50 AALDAADAIIFGTPTYMGGPSWQFKKFADASSKPWFSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGL 124 (193)
T ss_dssp HHHHHCSEEEEEEEEETTEECHHHHHHHHHTHHHHHTTTTTTCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHCCEEEEEeCccCCCccHHHHHHHHHhhhhccccccCCCEEEEEEECCCCCCChHHHHHHHHHHHHHCCCE
Confidence 456789999999876543222233444444331 122357888888765332111111233444555566644
No 310
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=31.28 E-value=87 Score=18.76 Aligned_cols=76 Identities=12% Similarity=0.111 Sum_probs=36.5
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCH
Q psy11289 53 SGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINV 132 (159)
Q Consensus 53 ~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 132 (159)
..|.+++=+.+.+.+.++-+ ..+.+....++.|+|++....+ . +....+...|+..+-.-..+...+
T Consensus 59 ~~dliilD~~l~~~~g~~~~----~~lr~~~~~~~~pii~~t~~~~--------~-~~~~~~~~~g~~~~l~KP~~~~~l 125 (152)
T 3heb_A 59 RAQLVLLDLNLPDMTGIDIL----KLVKENPHTRRSPVVILTTTDD--------Q-REIQRCYDLGANVYITKPVNYENF 125 (152)
T ss_dssp CBEEEEECSBCSSSBHHHHH----HHHHHSTTTTTSCEEEEESCCC--------H-HHHHHHHHTTCSEEEECCSSHHHH
T ss_pred CCCEEEEeCCCCCCcHHHHH----HHHHhcccccCCCEEEEecCCC--------H-HHHHHHHHCCCcEEEeCCCCHHHH
Confidence 35655554444444444433 3344422235778888776554 2 223344566766544433333334
Q ss_pred HHHHHHHHH
Q psy11289 133 DQAFHELVR 141 (159)
Q Consensus 133 ~~~~~~l~~ 141 (159)
.+.++.+..
T Consensus 126 ~~~i~~~~~ 134 (152)
T 3heb_A 126 ANAIRQLGL 134 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 311
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=31.21 E-value=84 Score=18.57 Aligned_cols=78 Identities=10% Similarity=0.126 Sum_probs=37.6
Q ss_pred cCCEEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCC
Q psy11289 53 SGEGFLLVFSVTDR--NSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRI 130 (159)
Q Consensus 53 ~~~~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 130 (159)
..|++++ |..-+ +.++ ++..+.+....++.|+|++....+ .+ ....+...|+.-+-.-.. .
T Consensus 51 ~~dlii~--D~~l~~~~g~~----~~~~lr~~~~~~~~pii~~s~~~~--------~~-~~~~~~~~ga~~~l~Kp~--~ 113 (144)
T 3kht_A 51 KYDLIIL--DIGLPIANGFE----VMSAVRKPGANQHTPIVILTDNVS--------DD-RAKQCMAAGASSVVDKSS--N 113 (144)
T ss_dssp CCSEEEE--CTTCGGGCHHH----HHHHHHSSSTTTTCCEEEEETTCC--------HH-HHHHHHHTTCSEEEECCT--T
T ss_pred CCCEEEE--eCCCCCCCHHH----HHHHHHhcccccCCCEEEEeCCCC--------HH-HHHHHHHcCCCEEEECCC--C
Confidence 3565555 55433 2332 234444422235788888776554 22 233344567664433333 0
Q ss_pred CHHHHHHHHHHHHHhcc
Q psy11289 131 NVDQAFHELVRIVLLHT 147 (159)
Q Consensus 131 ~i~~~~~~l~~~~~~~~ 147 (159)
+..++...+-..+....
T Consensus 114 ~~~~l~~~i~~~l~~~~ 130 (144)
T 3kht_A 114 NVTDFYGRIYAIFSYWL 130 (144)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45555555554444433
No 312
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=31.18 E-value=1.1e+02 Score=19.68 Aligned_cols=74 Identities=5% Similarity=0.066 Sum_probs=43.5
Q ss_pred HHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh------------cCCCCCcEEEEEeCCCCCCc--CCCCHHHHHHHH
Q psy11289 49 QYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV------------KDRDEFPMLMVGNKADLDHQ--RQVSSMDAQNVA 114 (159)
Q Consensus 49 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~------------~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~ 114 (159)
..+..+|++|+++..-...---.++.|+..+... ....+++++++++--..... ........+.++
T Consensus 82 ~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~~l 161 (201)
T 1t5b_A 82 AELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKVFL 161 (201)
T ss_dssp HHHHHCSEEEEECCCBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHHHH
T ss_pred HHHHhCCEEEEEeCcccCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHHHH
Confidence 3467899999998876543333456777776531 11356788887764321111 112234456677
Q ss_pred HHcCCcEE
Q psy11289 115 RQLRIPYI 122 (159)
Q Consensus 115 ~~~~~~~~ 122 (159)
...|+..+
T Consensus 162 ~~~G~~~~ 169 (201)
T 1t5b_A 162 GFIGITDV 169 (201)
T ss_dssp HHTTCCCE
T ss_pred hhcCccee
Confidence 77887643
No 313
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=30.39 E-value=1.4e+02 Score=20.96 Aligned_cols=67 Identities=6% Similarity=0.076 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy11289 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIVLL 145 (159)
Q Consensus 66 ~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 145 (159)
+.|-..+..+...+.+ .++++|++-...+ ...+..++++.|++++.+++..+ +..+.+...+..+.+
T Consensus 220 eps~~~l~~l~~~ik~----~~v~~If~e~~~~--------~~~~~~ia~~~g~~v~~ld~l~~-~Y~~~m~~n~~~l~~ 286 (291)
T 1pq4_A 220 EPSAQELKQLIDTAKE----NNLTMVFGETQFS--------TKSSEAIAAEIGAGVELLDPLAA-DWSSNLKAVAQKIAN 286 (291)
T ss_dssp CCCHHHHHHHHHHHHT----TTCCEEEEETTSC--------CHHHHHHHHHHTCEEEEECTTCS-SHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH----cCCCEEEEeCCCC--------hHHHHHHHHHcCCeEEEEcCchh-hHHHHHHHHHHHHHH
Confidence 3455666665555544 5678887644333 45667788999999888887755 666666666666543
No 314
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=29.25 E-value=98 Score=19.75 Aligned_cols=43 Identities=5% Similarity=-0.045 Sum_probs=28.9
Q ss_pred hhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy11289 51 MRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKA 97 (159)
Q Consensus 51 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 97 (159)
+...|.+++.+..-...-...+..|+..+ ...+++++++++-.
T Consensus 85 l~~yD~iilg~Pvy~g~~~~~~~~fl~~~----~l~gk~v~~f~t~g 127 (171)
T 4ici_A 85 IGTYDVVFIGYPIWWDLAPRIINTFIEGH----SLKGKTVVPFATSG 127 (171)
T ss_dssp GGGCSEEEEEEECBTTBCCHHHHHHHHHS----CCTTSEEEEEEECS
T ss_pred HhHCCEEEEecccccCCchHHHHHHHHHc----CCCcCEEEEEEecC
Confidence 56789999999886533333455555443 34678888888765
No 315
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=28.76 E-value=1e+02 Score=18.84 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=8.4
Q ss_pred HHHHHHHHcCCcEEEeC
Q psy11289 109 DAQNVARQLRIPYIECS 125 (159)
Q Consensus 109 ~~~~~~~~~~~~~~~~s 125 (159)
....+|...++|++.+.
T Consensus 58 ~i~~lc~~~~Ip~~~v~ 74 (126)
T 2xzm_U 58 LVKALCAKNEIKYVSVP 74 (126)
T ss_dssp HHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHhCCCEEEEC
Confidence 34445555555555443
No 316
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=28.43 E-value=81 Score=17.52 Aligned_cols=19 Identities=11% Similarity=0.043 Sum_probs=10.5
Q ss_pred HHHHHHHHHcCCcEEEeCC
Q psy11289 108 MDAQNVARQLRIPYIECSA 126 (159)
Q Consensus 108 ~~~~~~~~~~~~~~~~~sa 126 (159)
.....+|...++|++.+..
T Consensus 43 ~~i~~lc~~~~Ip~~~v~s 61 (82)
T 3v7e_A 43 SSVVSLAEDQGISVSMVES 61 (82)
T ss_dssp HHHHHHHHHHTCCEEEESC
T ss_pred HHHHHHHHHcCCCEEEECC
Confidence 3445556666666665553
No 317
>2ivy_A Hypothetical protein SSO1404; structural genomics, unknown function, CAS, RNAI, crispr; 1.4A {Sulfolobus solfataricus} SCOP: d.58.58.1 PDB: 2i8e_A
Probab=27.99 E-value=80 Score=18.47 Aligned_cols=10 Identities=30% Similarity=0.919 Sum_probs=4.7
Q ss_pred EEEEEECCCh
Q psy11289 57 FLLVFSVTDR 66 (159)
Q Consensus 57 ii~v~d~~~~ 66 (159)
++++||+.+.
T Consensus 5 ~lV~YDI~~~ 14 (101)
T 2ivy_A 5 YLIFYDITDD 14 (101)
T ss_dssp EEEEEEECCH
T ss_pred EEEEEeCCCh
Confidence 4445555443
No 318
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=27.44 E-value=65 Score=22.82 Aligned_cols=72 Identities=6% Similarity=-0.050 Sum_probs=39.9
Q ss_pred HHHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh----cCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCc
Q psy11289 47 REQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV----KDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIP 120 (159)
Q Consensus 47 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 120 (159)
+...+..||++|++....+..---.++.|+..+... ....++|+.++++--. .. ........+.+...+|+.
T Consensus 117 l~e~I~~ADgiV~aSP~Yn~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~-~g-g~~a~~~Lr~~l~~lg~~ 192 (279)
T 2fzv_A 117 LRALSEWSEGQVWCSPERHGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGG-SQ-SFNAVNTLRLLGRWMRMF 192 (279)
T ss_dssp HHHHHHHCSEEEEEEEEETTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSS-SC-CCHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHCCeEEEEcCccccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCC-cc-HHHHHHHHHHHHHhcCcE
Confidence 344567899999998776643222334444444321 1235788888877422 11 112234556666677754
No 319
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=27.33 E-value=1e+02 Score=18.43 Aligned_cols=74 Identities=7% Similarity=-0.075 Sum_probs=37.8
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcC-CcEEEeCCCCCCC
Q psy11289 53 SGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLR-IPYIECSAKVRIN 131 (159)
Q Consensus 53 ~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~ 131 (159)
..|.+|+=+++.+.+.++-+. .+.+.. ++.|+|++....+ .+.. ..+...| +.-+-.- ...
T Consensus 58 ~~dlvi~D~~l~~~~g~~~~~----~l~~~~--~~~~ii~~s~~~~--------~~~~-~~~~~~g~~~~~l~K---P~~ 119 (153)
T 3hv2_A 58 EVDLVISAAHLPQMDGPTLLA----RIHQQY--PSTTRILLTGDPD--------LKLI-AKAINEGEIYRYLSK---PWD 119 (153)
T ss_dssp CCSEEEEESCCSSSCHHHHHH----HHHHHC--TTSEEEEECCCCC--------HHHH-HHHHHTTCCSEEECS---SCC
T ss_pred CCCEEEEeCCCCcCcHHHHHH----HHHhHC--CCCeEEEEECCCC--------HHHH-HHHHhCCCcceEEeC---CCC
Confidence 467777655555544554433 333322 5678887765544 2222 3344556 5544333 334
Q ss_pred HHHHHHHHHHHHH
Q psy11289 132 VDQAFHELVRIVL 144 (159)
Q Consensus 132 i~~~~~~l~~~~~ 144 (159)
..++...+-..+.
T Consensus 120 ~~~l~~~i~~~l~ 132 (153)
T 3hv2_A 120 DQELLLALRQALE 132 (153)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5666655555444
No 320
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=27.33 E-value=1.8e+02 Score=21.10 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=29.3
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEEeCCC
Q psy11289 53 SGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM-LMVGNKAD 98 (159)
Q Consensus 53 ~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~D 98 (159)
.++.+++|... ++.+..++.+.+..+... +.++ -+|.|+..
T Consensus 234 ~~~~~vlV~~p-e~~si~ea~r~~~~L~~~----g~~~~gvVvN~v~ 275 (354)
T 2woj_A 234 DLTTFVCVCIS-EFLSLYETERLIQELISY----DMDVNSIIVNQLL 275 (354)
T ss_dssp TTEEEEEEEES-SHHHHHHHHHHHHHHHHT----TCCEEEEEEEEEC
T ss_pred CCcEEEEEeCC-CcchHHHHHHHHHHHHHc----CCCCCEEEEecCC
Confidence 57888888875 467788888777777653 3343 47789987
No 321
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=27.28 E-value=78 Score=20.19 Aligned_cols=42 Identities=10% Similarity=0.008 Sum_probs=25.1
Q ss_pred HHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q psy11289 49 QYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNK 96 (159)
Q Consensus 49 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK 96 (159)
..++.||++|.++|..++++--... +-. ... .++|++++...
T Consensus 74 ~~i~~aD~vvA~ldg~~~D~GT~~E--iGy--A~A--~gkPVv~~~~~ 115 (157)
T 1f8y_A 74 NGIKTNDIMLGVYIPDEEDVGLGME--LGY--ALS--QGKYVLLVIPD 115 (157)
T ss_dssp HHHHTSSEEEEECCGGGCCHHHHHH--HHH--HHH--TTCEEEEEECG
T ss_pred HHHHhCCEEEEEcCCCCCCccHHHH--HHH--HHH--CCCeEEEEEcC
Confidence 3368999999999876554432211 011 111 57898887543
No 322
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=26.43 E-value=1e+02 Score=17.95 Aligned_cols=75 Identities=8% Similarity=0.019 Sum_probs=36.7
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCH
Q psy11289 53 SGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINV 132 (159)
Q Consensus 53 ~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 132 (159)
..|.+++=+++.+.+.++-+ ..+.+.. +..|+|++....+ .+. ...+...|+.-+-.- ..+.
T Consensus 51 ~~dlvi~d~~l~~~~g~~~~----~~l~~~~--~~~~ii~~s~~~~--------~~~-~~~~~~~g~~~~l~k---P~~~ 112 (137)
T 3hdg_A 51 APDVIITDIRMPKLGGLEML----DRIKAGG--AKPYVIVISAFSE--------MKY-FIKAIELGVHLFLPK---PIEP 112 (137)
T ss_dssp CCSEEEECSSCSSSCHHHHH----HHHHHTT--CCCEEEECCCCCC--------HHH-HHHHHHHCCSEECCS---SCCH
T ss_pred CCCEEEEeCCCCCCCHHHHH----HHHHhcC--CCCcEEEEecCcC--------hHH-HHHHHhCCcceeEcC---CCCH
Confidence 46766664444444444333 3333332 5677777655444 222 233445566544332 3355
Q ss_pred HHHHHHHHHHHHh
Q psy11289 133 DQAFHELVRIVLL 145 (159)
Q Consensus 133 ~~~~~~l~~~~~~ 145 (159)
.++...+-+.+..
T Consensus 113 ~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 113 GRLMETLEDFRHI 125 (137)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666665554443
No 323
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=26.16 E-value=77 Score=18.90 Aligned_cols=36 Identities=14% Similarity=0.255 Sum_probs=23.9
Q ss_pred CeeEEEEEEeCCCcccchHHHHHHhhcCCEEEEEEECC
Q psy11289 27 DIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVT 64 (159)
Q Consensus 27 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~ 64 (159)
|-.+++.--...|.+ +.+....+..+|++|+.-|..
T Consensus 33 G~~ikVEtqgs~g~~--n~Lt~~~I~~AD~VIia~d~~ 68 (106)
T 2m1z_A 33 GNLIKVETQGATGIE--NELTEKDVNIGEVVIFAVDTK 68 (106)
T ss_dssp TCEEEEEEEETTEES--SCCCHHHHHHCSEEEEEESSC
T ss_pred CCEEEEEEecCcccc--CCCCHHHHhhCCEEEEecccc
Confidence 344555555555544 234567778999999999975
No 324
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=24.86 E-value=98 Score=21.98 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=36.8
Q ss_pred hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHH
Q psy11289 52 RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVAR 115 (159)
Q Consensus 52 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 115 (159)
.++|+++++-....+.+-+.+..++..+... .+.|+++ -|- .......++.+...++++
T Consensus 106 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiil-Yn~-P~~tg~~l~~~~~~~La~ 164 (301)
T 1xky_A 106 VGVDAVMLVAPYYNKPSQEGMYQHFKAIAES---TPLPVML-YNV-PGRSIVQISVDTVVRLSE 164 (301)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHT---CSSCEEE-EEC-HHHHSSCCCHHHHHHHHT
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---cCCCEEE-EeC-ccccCCCCCHHHHHHHHc
Confidence 4899999997776666677888888888775 3578775 321 000112344566666663
No 325
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=24.84 E-value=63 Score=19.39 Aligned_cols=39 Identities=5% Similarity=0.112 Sum_probs=22.0
Q ss_pred hhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEE
Q psy11289 51 MRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVG 94 (159)
Q Consensus 51 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~ 94 (159)
+++++++|++.+.....+ .|.+.=.......++|++.|-
T Consensus 36 I~~~~~vIvL~G~~t~~s-----~wv~~EI~~A~~~gkpIigV~ 74 (111)
T 1eiw_A 36 PEDADAVIVLAGLWGTRR-----DEILGAVDLARKSSKPIITVR 74 (111)
T ss_dssp SSSCSEEEEEGGGTTTSH-----HHHHHHHHHHTTTTCCEEEEC
T ss_pred cccCCEEEEEeCCCcCCC-----hHHHHHHHHHHHcCCCEEEEE
Confidence 567888888887654322 232222222233678887664
No 326
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=24.83 E-value=1e+02 Score=21.80 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=42.3
Q ss_pred hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHc-CCcEEEeCC
Q psy11289 52 RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQL-RIPYIECSA 126 (159)
Q Consensus 52 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa 126 (159)
.++|+++++-....+.+-+.+..++..+.+.. +.|+++ -|- .......++.+...++++++ ++--+.-|+
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~---~lPiil-Yn~-P~~tg~~l~~~~~~~La~~~pnivgiKds~ 164 (294)
T 2ehh_A 94 VGADGALVVVPYYNKPTQRGLYEHFKTVAQEV---DIPIII-YNI-PSRTCVEISVDTMFKLASECENIVASKEST 164 (294)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC---CSCEEE-EEC-HHHHSCCCCHHHHHHHHHHCTTEEEEEECC
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc---CCCEEE-EeC-CcccCcCCCHHHHHHHHhhCCCEEEEEeCC
Confidence 48999999977666567778888888887753 568775 321 00011344567777777333 333344343
No 327
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=24.79 E-value=1.1e+02 Score=17.69 Aligned_cols=74 Identities=5% Similarity=0.016 Sum_probs=35.8
Q ss_pred hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCC
Q psy11289 52 RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRIN 131 (159)
Q Consensus 52 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 131 (159)
...|.+++=+++.+.+.++-+ ..+.+.. ++.|+|++....+.. ....+...|+.-+-.-.. +
T Consensus 45 ~~~dlii~d~~l~~~~g~~~~----~~l~~~~--~~~~ii~~s~~~~~~---------~~~~~~~~g~~~~l~kp~---~ 106 (134)
T 3f6c_A 45 LKPDIVIIDVDIPGVNGIQVL----ETLRKRQ--YSGIIIIVSAKNDHF---------YGKHCADAGANGFVSKKE---G 106 (134)
T ss_dssp HCCSEEEEETTCSSSCHHHHH----HHHHHTT--CCSEEEEEECC---C---------THHHHHHTTCSEEEEGGG---C
T ss_pred cCCCEEEEecCCCCCChHHHH----HHHHhcC--CCCeEEEEeCCCChH---------HHHHHHHhCCCEEEeCCC---C
Confidence 356777765544444444433 3333332 567888777655521 112344567664433332 3
Q ss_pred HHHHHHHHHHHH
Q psy11289 132 VDQAFHELVRIV 143 (159)
Q Consensus 132 i~~~~~~l~~~~ 143 (159)
..++...+-..+
T Consensus 107 ~~~l~~~i~~~~ 118 (134)
T 3f6c_A 107 MNNIIAAIEAAK 118 (134)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555555544
No 328
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=24.76 E-value=1e+02 Score=21.69 Aligned_cols=70 Identities=10% Similarity=0.160 Sum_probs=42.3
Q ss_pred hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHc-CCcEEEeCC
Q psy11289 52 RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQL-RIPYIECSA 126 (159)
Q Consensus 52 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa 126 (159)
.++|+++++-....+.+-+.+..++..+.... +.|+++ -|- .......++.+...++++++ ++--+.-|+
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~---~lPiil-Yn~-P~~tg~~l~~~~~~~La~~~pnivgiK~s~ 164 (289)
T 2yxg_A 94 VGADAVLSITPYYNKPTQEGLRKHFGKVAESI---NLPIVL-YNV-PSRTAVNLEPKTVKLLAEEYSNISAVKEAN 164 (289)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC---SSCEEE-EEC-HHHHSCCCCHHHHHHHHHHCTTEEEEEECC
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc---CCCEEE-EeC-ccccCcCCCHHHHHHHHHhCCCEEEEEeCC
Confidence 48999999977666567778888888887753 568775 321 00012334567777777333 333344444
No 329
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=24.49 E-value=1e+02 Score=23.00 Aligned_cols=49 Identities=2% Similarity=-0.081 Sum_probs=32.5
Q ss_pred HHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc--------CCCCCcEEEEEeCC
Q psy11289 49 QYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK--------DRDEFPMLMVGNKA 97 (159)
Q Consensus 49 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~--------~~~~~p~ivv~nK~ 97 (159)
..+..+|++||.+..-...-=-.++.|+..+.... ...+++++++.+--
T Consensus 288 ~~l~~aD~iv~~~P~yw~~~Pa~lK~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g 344 (413)
T 3l9w_A 288 EALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTG 344 (413)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECS
T ss_pred HHHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCceecCCCCccccceEEEEEeCC
Confidence 34678999999998876444445667888875421 13567887776543
No 330
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=24.46 E-value=12 Score=25.95 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=12.0
Q ss_pred CEEEEEEECCChhhHHHH
Q psy11289 55 EGFLLVFSVTDRNSFEEI 72 (159)
Q Consensus 55 ~~ii~v~d~~~~~s~~~~ 72 (159)
.|+|+||+...+...+.+
T Consensus 104 ggII~~f~~p~~~~~~~i 121 (233)
T 3uc9_A 104 AGIILITDIRQTKPQELL 121 (233)
T ss_dssp EEEEEEECHHHHCGGGTH
T ss_pred ceEEEEEeCCCcchHHHH
Confidence 789999976655544433
No 331
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=24.38 E-value=1.3e+02 Score=18.43 Aligned_cols=82 Identities=6% Similarity=0.016 Sum_probs=48.6
Q ss_pred hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCC
Q psy11289 52 RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRIN 131 (159)
Q Consensus 52 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 131 (159)
.++|++.+.... ..+...+.++++.+.+.. ..++++++-|.-.- +. . ...+....+++.|+..+. ..|.+
T Consensus 53 ~~~d~v~lS~~~--~~~~~~~~~~i~~l~~~g-~~~i~v~vGG~~~~-~~-~--~~~~~~~~~~~~G~d~~~---~~g~~ 122 (137)
T 1ccw_A 53 TKADAILVSSLY--GQGEIDCKGLRQKCDEAG-LEGILLYVGGNIVV-GK-Q--HWPDVEKRFKDMGYDRVY---APGTP 122 (137)
T ss_dssp HTCSEEEEEECS--STHHHHHTTHHHHHHHTT-CTTCEEEEEESCSS-SS-C--CHHHHHHHHHHTTCSEEC---CTTCC
T ss_pred cCCCEEEEEecC--cCcHHHHHHHHHHHHhcC-CCCCEEEEECCCcC-ch-H--hhhhhHHHHHHCCCCEEE---CCCCC
Confidence 467877776654 445556667777776653 23566655443211 01 1 144455678888987544 34457
Q ss_pred HHHHHHHHHHHH
Q psy11289 132 VDQAFHELVRIV 143 (159)
Q Consensus 132 i~~~~~~l~~~~ 143 (159)
..++.+++.+.+
T Consensus 123 ~~~~~~~l~~~~ 134 (137)
T 1ccw_A 123 PEVGIADLKKDL 134 (137)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888887654
No 332
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=23.95 E-value=56 Score=18.37 Aligned_cols=27 Identities=11% Similarity=0.163 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHcCCcEEEeCCCCC
Q psy11289 103 RQVSSMDAQNVARQLRIPYIECSAKVR 129 (159)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~sa~~~ 129 (159)
..++..++...|.+.++..+++|....
T Consensus 27 Gv~~~~eAl~~A~e~~LDLVevsp~a~ 53 (78)
T 1tif_A 27 GIKSKQEALEIAARRNLDLVLVAPNAK 53 (78)
T ss_dssp EEEEHHHHHHHHHHTTCEEEEEETTSS
T ss_pred CcccHHHHHHHHHHcCCCEEEECCCCC
Confidence 457789999999999999999998643
No 333
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=23.79 E-value=1.1e+02 Score=21.72 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=44.5
Q ss_pred hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHH-cCCcEEEeCC
Q psy11289 52 RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQ-LRIPYIECSA 126 (159)
Q Consensus 52 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa 126 (159)
.++|+++++-....+.+-+.+..++..+.+.. +.|+++ -|- .......++.+...++++. -++--+.-|+
T Consensus 102 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~---~lPiil-Yn~-P~~tg~~l~~~~~~~La~~~pnivgiKdss 172 (301)
T 3m5v_A 102 HGADGILSVAPYYNKPTQQGLYEHYKAIAQSV---DIPVLL-YNV-PGRTGCEISTDTIIKLFRDCENIYGVKEAS 172 (301)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC---SSCEEE-EEC-HHHHSCCCCHHHHHHHHHHCTTEEEEEECS
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC---CCCEEE-EeC-chhhCcCCCHHHHHHHHhcCCCEEEEEeCC
Confidence 47999999976655556677888888887763 578775 220 0001234557777788866 4554455454
No 334
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=23.78 E-value=1.5e+02 Score=19.05 Aligned_cols=41 Identities=2% Similarity=-0.032 Sum_probs=23.9
Q ss_pred HHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEe
Q psy11289 49 QYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGN 95 (159)
Q Consensus 49 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~n 95 (159)
..++.||++|.++|...+++--... +-.... .++|++++-+
T Consensus 65 ~~i~~aD~viA~ldg~~~D~Gt~~E--iG~A~a----~gkPVi~~~~ 105 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTIDAGVASE--IGVAYA----KGIPVVALYT 105 (162)
T ss_dssp HHHHTCSEEEEECCSSSCCHHHHHH--HHHHHH----TTCCEEEECC
T ss_pred HHHHHCCEEEEECCCCCCCCCHHHH--HHHHHH----CCCEEEEEEc
Confidence 4478999999999877444332221 011111 5678876654
No 335
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=23.74 E-value=1.1e+02 Score=21.97 Aligned_cols=70 Identities=13% Similarity=0.239 Sum_probs=43.1
Q ss_pred hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHc-CCcEEEeCC
Q psy11289 52 RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQL-RIPYIECSA 126 (159)
Q Consensus 52 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa 126 (159)
.++|+++++-....+.+-+.+..++..+.... +.|+++= |- .......++.+...++++++ ++--+.-|+
T Consensus 116 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~---~lPiilY-n~-P~~tg~~l~~~~~~~La~~~pnIvgiKdss 186 (315)
T 3si9_A 116 AGADAVLVVTPYYNRPNQRGLYTHFSSIAKAI---SIPIIIY-NI-PSRSVIDMAVETMRDLCRDFKNIIGVKDAT 186 (315)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC---SSCEEEE-EC-HHHHSCCCCHHHHHHHHHHCTTEEEEEECS
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHcC---CCCEEEE-eC-chhhCCCCCHHHHHHHHhhCCCEEEEEeCC
Confidence 47899999876655556677888888887763 5787762 21 00012344567777777633 344444444
No 336
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=23.56 E-value=1.2e+02 Score=21.48 Aligned_cols=38 Identities=13% Similarity=0.111 Sum_probs=28.1
Q ss_pred hcCCEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy11289 52 RSGEGFLLVFSVTDR-NSFEEIYKFHRQILRVKDRDEFPMLM 92 (159)
Q Consensus 52 ~~~~~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~iv 92 (159)
.++|+++++-....+ .+-+.+..++..+.... +.|+++
T Consensus 90 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~---~lPiil 128 (293)
T 1w3i_A 90 FDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVS---PHPVYL 128 (293)
T ss_dssp SCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHC---SSCEEE
T ss_pred cCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhC---CCCEEE
Confidence 378999998776665 57777888888887753 467765
No 337
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=23.39 E-value=1.3e+02 Score=17.98 Aligned_cols=46 Identities=9% Similarity=0.021 Sum_probs=23.9
Q ss_pred CCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q psy11289 86 DEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143 (159)
Q Consensus 86 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 143 (159)
++.|+|++....+ . +....+...|+.-+-.- ..+..++...+...+
T Consensus 93 ~~~~ii~ls~~~~--------~-~~~~~~~~~g~~~~l~K---p~~~~~l~~~i~~~~ 138 (150)
T 4e7p_A 93 LETKVVVVTTFKR--------A-GYFERAVKAGVDAYVLK---ERSIADLMQTLHTVL 138 (150)
T ss_dssp CSCEEEEEESCCC--------H-HHHHHHHHTTCSEEEET---TSCHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCC--------H-HHHHHHHHCCCcEEEec---CCCHHHHHHHHHHHH
Confidence 5677777765544 2 22233445566533332 235666666655544
No 338
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=23.39 E-value=1.1e+02 Score=21.52 Aligned_cols=70 Identities=20% Similarity=0.213 Sum_probs=40.6
Q ss_pred hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCC
Q psy11289 52 RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSA 126 (159)
Q Consensus 52 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 126 (159)
.++|+++++-..-.+.+-+.+..++..+.... +.|+++ -|-= ......++.+...++++.-++--+.-|+
T Consensus 95 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~---~lPiil-Yn~P-~~tg~~l~~~~~~~La~~pnivgiK~ss 164 (291)
T 3tak_A 95 LGADAALLVTPYYNKPTQEGLYQHYKAIAEAV---ELPLIL-YNVP-GRTGVDLSNDTAVRLAEIPNIVGIKDAT 164 (291)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC---CSCEEE-EECH-HHHSCCCCHHHHHHHTTSTTEEEEEECS
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc---CCCEEE-Eecc-cccCCCCCHHHHHHHHcCCCEEEEEeCC
Confidence 47999999876655556677888888887763 578775 2210 0012334466666666322333344343
No 339
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=23.23 E-value=2e+02 Score=20.31 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=45.1
Q ss_pred hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCC
Q psy11289 52 RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSA 126 (159)
Q Consensus 52 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 126 (159)
.++|+++++-....+.+-+.+..++..+.... +.|+++ -|- .......++.+...++++.-++--+.-|+
T Consensus 98 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~---~lPiil-Yn~-P~~tg~~l~~~~~~~La~~pnIvgiKdss 167 (300)
T 3eb2_A 98 LGADGILAILEAYFPLKDAQIESYFRAIADAV---EIPVVI-YTN-PQFQRSDLTLDVIARLAEHPRIRYIKDAS 167 (300)
T ss_dssp HTCSEEEEEECCSSCCCHHHHHHHHHHHHHHC---SSCEEE-EEC-TTTCSSCCCHHHHHHHHTSTTEEEEEECS
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHC---CCCEEE-EEC-ccccCCCCCHHHHHHHHcCCCEEEEEcCC
Confidence 48999999987766667778888888888764 478775 332 11123456677777776433344455454
No 340
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=23.17 E-value=1.1e+02 Score=21.92 Aligned_cols=59 Identities=15% Similarity=0.265 Sum_probs=37.3
Q ss_pred hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHH
Q psy11289 52 RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVAR 115 (159)
Q Consensus 52 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 115 (159)
.++|+++++-....+.+-+.+..++..+.... +.|+++= |- .......++.+...++++
T Consensus 117 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~---~lPiilY-n~-P~~tg~~l~~~~~~~La~ 175 (314)
T 3qze_A 117 GGADACLLVTPYYNKPTQEGMYQHFRHIAEAV---AIPQILY-NV-PGRTSCDMLPETVERLSK 175 (314)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHS---CSCEEEE-EC-HHHHSCCCCHHHHHHHHT
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc---CCCEEEE-eC-ccccCCCCCHHHHHHHhc
Confidence 47999999976665556677888888887763 5787762 21 000123344666666663
No 341
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=23.13 E-value=1e+02 Score=21.93 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=42.6
Q ss_pred hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHH-HHcCCcEEEeCC
Q psy11289 52 RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVA-RQLRIPYIECSA 126 (159)
Q Consensus 52 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~~sa 126 (159)
.++|+++++-....+.+-+.+..++..+... .+.|+++ -|- .......++.+...+++ +.-++--+.-|+
T Consensus 106 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiil-Yn~-P~~tg~~l~~~~~~~La~~~pnIvgiKdss 176 (306)
T 1o5k_A 106 LGANGVLVVTPYYNKPTQEGLYQHYKYISER---TDLGIVV-YNV-PGRTGVNVLPETAARIAADLKNVVGIXEAN 176 (306)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHTT---CSSCEEE-EEC-HHHHSCCCCHHHHHHHHHHCTTEEEEEECC
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---CCCCEEE-EeC-ccccCcCCCHHHHHHHHHhCCCEEEEeCCC
Confidence 4899999997766555677788888887664 3578775 221 00012345577777787 333344444444
No 342
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=23.02 E-value=2e+02 Score=20.08 Aligned_cols=68 Identities=7% Similarity=0.044 Sum_probs=41.3
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCC------CHHHHHHHH
Q psy11289 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRI------NVDQAFHEL 139 (159)
Q Consensus 66 ~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~------~i~~~~~~l 139 (159)
+.|-.++......+.+ .++++|++-...+ ...+..++++.|++++.++..... +..+.+...
T Consensus 206 eps~~~l~~l~~~ik~----~~v~~if~e~~~~--------~~~~~~ia~~~g~~v~~ld~l~~~~~~~~~~Y~~~m~~n 273 (284)
T 2prs_A 206 QPGAQRLHEIRTQLVE----QKATCVFAEPQFR--------PAVVESVARGTSVRMGTLDPLGTNIKLGKTSYSEFLSQL 273 (284)
T ss_dssp CCCHHHHHHHHHHHHH----TTCCEEEECTTSC--------SHHHHHHTTTSCCEEEECCTTCTTSCCSTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH----cCCCEEEEeCCCC--------hHHHHHHHHHcCCeEEEeccCcccCCCCcccHHHHHHHH
Confidence 4456666666666655 5677776543332 456677888889888777665431 355555555
Q ss_pred HHHHHh
Q psy11289 140 VRIVLL 145 (159)
Q Consensus 140 ~~~~~~ 145 (159)
+..+.+
T Consensus 274 ~~~l~~ 279 (284)
T 2prs_A 274 ANQYAS 279 (284)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 343
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=23.00 E-value=1.1e+02 Score=21.67 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=28.4
Q ss_pred hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy11289 52 RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLM 92 (159)
Q Consensus 52 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~iv 92 (159)
.++|+++++-....+.+-+.+..++..+.... +.|+++
T Consensus 110 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~---~lPiil 147 (304)
T 3cpr_A 110 AGADGLLVVTPYYSKPSQEGLLAHFGAIAAAT---EVPICL 147 (304)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC---CSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc---CCCEEE
Confidence 48999999977665556777888888887753 568775
No 344
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=23.00 E-value=1.7e+02 Score=22.64 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=30.1
Q ss_pred HHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeC
Q psy11289 78 QILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125 (159)
Q Consensus 78 ~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 125 (159)
.+.+.......|+|++|.-....+ ..++..++++.+++|++..-
T Consensus 201 ~~~~~l~~a~rpvil~G~g~~~~~----a~~~l~~lae~~~~Pv~~t~ 244 (568)
T 2wvg_A 201 ETLKFIANRDKVAVLVGSKLRAAG----AEEAAVKFADALGGAVATMA 244 (568)
T ss_dssp HHHHHHTTCCCEEEEECTTTTTTT----CHHHHHHHHHHHCCEEEEEG
T ss_pred HHHHHHHhCCCCEEEECccccccc----hHHHHHHHHHHhCCCEEEch
Confidence 333333335689999997765322 25788999999999977553
No 345
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=22.75 E-value=1.8e+02 Score=19.59 Aligned_cols=35 Identities=3% Similarity=-0.111 Sum_probs=23.7
Q ss_pred HHHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhh
Q psy11289 48 EQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRV 82 (159)
Q Consensus 48 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~ 82 (159)
...+..||++|+.+..-...---.++.|+..+...
T Consensus 78 ~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~v~~~ 112 (218)
T 3rpe_A 78 IENYLWADTIIYQMPAWWMGEPWILKKYIDEVFTD 112 (218)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCEEEEECChHhccCCHHHHHHHHHHHhc
Confidence 34567899999999886643334456677766543
No 346
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=22.69 E-value=1.3e+02 Score=17.91 Aligned_cols=75 Identities=7% Similarity=-0.037 Sum_probs=39.2
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCH
Q psy11289 53 SGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINV 132 (159)
Q Consensus 53 ~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 132 (159)
..|.+++=+.+.+.+.++-+ ..+.+.. +..|+|++....| . ....-+...|+.-+-.- ..+.
T Consensus 61 ~~dlii~d~~l~~~~g~~~~----~~l~~~~--~~~~ii~~s~~~~--------~-~~~~~~~~~g~~~~l~K---p~~~ 122 (152)
T 3eul_A 61 LPDVALLDYRMPGMDGAQVA----AAVRSYE--LPTRVLLISAHDE--------P-AIVYQALQQGAAGFLLK---DSTR 122 (152)
T ss_dssp CCSEEEEETTCSSSCHHHHH----HHHHHTT--CSCEEEEEESCCC--------H-HHHHHHHHTTCSEEEET---TCCH
T ss_pred CCCEEEEeCCCCCCCHHHHH----HHHHhcC--CCCeEEEEEccCC--------H-HHHHHHHHcCCCEEEec---CCCH
Confidence 46766664444444444333 3333332 5678887766554 2 22233445676644333 3456
Q ss_pred HHHHHHHHHHHHh
Q psy11289 133 DQAFHELVRIVLL 145 (159)
Q Consensus 133 ~~~~~~l~~~~~~ 145 (159)
.++...+...+..
T Consensus 123 ~~l~~~i~~~~~~ 135 (152)
T 3eul_A 123 TEIVKAVLDCAKG 135 (152)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC
Confidence 6777666665543
No 347
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=22.63 E-value=1e+02 Score=18.22 Aligned_cols=40 Identities=13% Similarity=0.250 Sum_probs=20.5
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy11289 53 SGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKAD 98 (159)
Q Consensus 53 ~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 98 (159)
..|.+++=+.+.+.+.++-+ ..+.+.. +..|+|++....+
T Consensus 49 ~~dlvllD~~lp~~~g~~l~----~~l~~~~--~~~~ii~ls~~~~ 88 (141)
T 3cu5_A 49 PPNVLLTDVRMPRMDGIELV----DNILKLY--PDCSVIFMSGYSD 88 (141)
T ss_dssp CCSEEEEESCCSSSCHHHHH----HHHHHHC--TTCEEEEECCSTT
T ss_pred CCCEEEEeCCCCCCCHHHHH----HHHHhhC--CCCcEEEEeCCCc
Confidence 45766664444343444333 2333322 5678888766554
No 348
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=22.55 E-value=1.1e+02 Score=21.75 Aligned_cols=60 Identities=18% Similarity=0.115 Sum_probs=37.3
Q ss_pred hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHH
Q psy11289 52 RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVAR 115 (159)
Q Consensus 52 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 115 (159)
.++|+++++-....+.+-+.+..++..+.... ++.|+++ -|- .......++.+...++++
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~~lPiil-Yn~-P~~tg~~l~~~~~~~La~ 164 (303)
T 2wkj_A 105 YGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSA--DGLPMVV-YNI-PALSGVKLTLDQINTLVT 164 (303)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHH--TTCCEEE-EEC-HHHHCCCCCHHHHHHHHT
T ss_pred CCCCEEEecCCCCCCCCHHHHHHHHHHHHHhC--CCCCEEE-EeC-ccccCCCCCHHHHHHHhc
Confidence 48999999977666557778888888887764 2378775 221 000112344666666664
No 349
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=22.50 E-value=1.1e+02 Score=21.59 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=36.0
Q ss_pred hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHH
Q psy11289 52 RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVAR 115 (159)
Q Consensus 52 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 115 (159)
.++|+++++-....+.+-+.+..++..+.+. .+.|+++ -|- .......++.+...++++
T Consensus 95 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a---~~lPiil-Yn~-P~~tg~~l~~~~~~~La~ 153 (292)
T 2ojp_A 95 SGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH---TDLPQIL-YNV-PSRTGCDLLPETVGRLAK 153 (292)
T ss_dssp SSCSEEEEECCCSSCCCHHHHHHHHHHHHTT---CSSCEEE-ECC-HHHHSCCCCHHHHHHHHT
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEE-EeC-cchhccCCCHHHHHHHHc
Confidence 3789999987666555677777888887664 3578775 221 000113344666666663
No 350
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=22.42 E-value=1.2e+02 Score=21.46 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=28.4
Q ss_pred hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy11289 52 RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLM 92 (159)
Q Consensus 52 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~iv 92 (159)
.++|+++++-....+.+-+.+..++..+.+.. +.|+++
T Consensus 101 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~---~lPiil 138 (297)
T 3flu_A 101 AGADYTLSVVPYYNKPSQEGIYQHFKTIAEAT---SIPMII 138 (297)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC---CSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC---CCCEEE
Confidence 47899999876655556677788888887763 568775
No 351
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=28.05 E-value=18 Score=24.00 Aligned_cols=48 Identities=13% Similarity=0.092 Sum_probs=26.6
Q ss_pred HHhhcCCEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCCcEEEEEeC
Q psy11289 49 QYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK--DRDEFPMLMVGNK 96 (159)
Q Consensus 49 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~p~ivv~nK 96 (159)
..+..+|++|++....+..---.++.|+..+.... ...++|+.++++-
T Consensus 69 ~~i~~AD~iIi~tP~Y~~s~p~~lK~~iD~l~~~~~~~l~gK~v~~v~ts 118 (199)
T 3s2y_A 69 QQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTAS 118 (199)
Confidence 34678999999977655322222333333333210 2256788877753
No 352
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=22.25 E-value=1.2e+02 Score=22.13 Aligned_cols=70 Identities=11% Similarity=0.138 Sum_probs=42.4
Q ss_pred hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHH-cCCcEEEeCC
Q psy11289 52 RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQ-LRIPYIECSA 126 (159)
Q Consensus 52 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa 126 (159)
.++|+++++-....+.+-+.+..++..+.+. .+.|+++ -|- .......++.+...+++++ -++--+.-|+
T Consensus 125 ~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a---~~lPiil-Yn~-P~~tg~~l~~e~~~~La~~~pnIvgiKdss 195 (343)
T 2v9d_A 125 AGADGIVVINPYYWKVSEANLIRYFEQVADS---VTLPVML-YNF-PALTGQDLTPALVKTLADSRSNIIGIKDTI 195 (343)
T ss_dssp HTCSEEEEECCSSSCCCHHHHHHHHHHHHHT---CSSCEEE-EEC-HHHHSSCCCHHHHHHHHHHCTTEEEEEECC
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEE-EeC-chhcCcCCCHHHHHHHHHhCCCEEEEEeCC
Confidence 4899999997766655777888888888775 3578775 321 0001234557777777733 3333344443
No 353
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=22.18 E-value=1.3e+02 Score=17.89 Aligned_cols=40 Identities=10% Similarity=0.084 Sum_probs=21.0
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy11289 53 SGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKAD 98 (159)
Q Consensus 53 ~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 98 (159)
..|++++=++..+.+.++-+ ..+.+.. +.+|+|++....+
T Consensus 51 ~~dlvi~d~~l~~~~g~~~~----~~l~~~~--~~~~ii~ls~~~~ 90 (154)
T 2rjn_A 51 SVQLVISDMRMPEMGGEVFL----EQVAKSY--PDIERVVISGYAD 90 (154)
T ss_dssp CCSEEEEESSCSSSCHHHHH----HHHHHHC--TTSEEEEEECGGG
T ss_pred CCCEEEEecCCCCCCHHHHH----HHHHHhC--CCCcEEEEecCCC
Confidence 45766664444443444332 3333332 5678888775544
No 354
>3u02_A Putative transcription-associated protein TFIIS; structural genomics, PSI-biology; HET: TPO MSE CIT MES; 2.40A {Pyrococcus furiosus dsm 3638}
Probab=21.83 E-value=2.1e+02 Score=19.96 Aligned_cols=86 Identities=13% Similarity=0.254 Sum_probs=47.6
Q ss_pred hhcCCEEEEEEECCChhhHHHHH----HHHHHHHhhcCCCCCcEEEEEeCCCCCC----------cCCCCHHHHHHHHHH
Q psy11289 51 MRSGEGFLLVFSVTDRNSFEEIY----KFHRQILRVKDRDEFPMLMVGNKADLDH----------QRQVSSMDAQNVARQ 116 (159)
Q Consensus 51 ~~~~~~ii~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~p~ivv~nK~D~~~----------~~~~~~~~~~~~~~~ 116 (159)
-++..++.+.+++. +...+.+. ..+.+.........-|-+++..-. .++ .+.++.+++..++++
T Consensus 52 TrgN~a~~l~~~v~-~~~~~~l~~~a~~~v~~~s~~~~~~t~PGi~v~~~~-~~~~L~~f~~~A~~~vvt~~~A~~~a~~ 129 (252)
T 3u02_A 52 TRGNGAVAMSFKID-EEKIKEVKTLVIRYVRELADIDHENTNPGIVFLIGE-VPKELEEFSLRALREHVTIEEAEHVARK 129 (252)
T ss_dssp --CCEEEEEEEECC-GGGHHHHHHHHHHHHHHHHTCC-----CCEEEEESS-BCHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CCCCcEEEEEEEcC-CCCHHHHHHHHHHHHHHHhcccCCCCCCEEEEEeCC-CCHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence 45566777777763 22333333 333332211111124666666543 221 256888999999999
Q ss_pred cCCcEEEeCCCCCCCHHHHHHHHH
Q psy11289 117 LRIPYIECSAKVRINVDQAFHELV 140 (159)
Q Consensus 117 ~~~~~~~~sa~~~~~i~~~~~~l~ 140 (159)
.|+.++ .-.+|.|+--.+-.+-
T Consensus 130 ~gi~~~--~~~~grGiIGALAAiG 151 (252)
T 3u02_A 130 VNAEVY--KFKLGRGIIGGLAAIG 151 (252)
T ss_dssp TTCEEE--TCCSSTHHHHHHHHHH
T ss_pred CCcEEE--ecCCCCeeeehhhhcc
Confidence 999765 3478888887776654
No 355
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=21.74 E-value=2.1e+02 Score=19.95 Aligned_cols=68 Identities=9% Similarity=0.046 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCC-----CCCHHHHHHHHH
Q psy11289 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKV-----RINVDQAFHELV 140 (159)
Q Consensus 66 ~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~-----~~~i~~~~~~l~ 140 (159)
+.|-.++..+...+.+ .++++|++-...+ ...+..++++.|++++.++... +.+..+++...+
T Consensus 209 eps~~~l~~l~~~ik~----~~v~~if~e~~~~--------~~~~~~ia~~~g~~v~~l~~l~~~~~~~~~Y~~~m~~n~ 276 (284)
T 3cx3_A 209 EPSPRQLTEIQEFVKT----YKVKTIFTESNAS--------SKVAETLVKSTGVGLKTLNPLESDPQNDKTYLENLEENM 276 (284)
T ss_dssp CCCSHHHHHHHHHHHH----TTCCCEEECSSSC--------CHHHHHHHSSSSCCEEECCCSSSCCCSSCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH----cCCCEEEEeCCCC--------cHHHHHHHHHcCCeEEEecCcccCCCCcccHHHHHHHHH
Confidence 3455566666666655 5667776543333 4566778888899888776543 346777777766
Q ss_pred HHHHh
Q psy11289 141 RIVLL 145 (159)
Q Consensus 141 ~~~~~ 145 (159)
..+.+
T Consensus 277 ~~l~~ 281 (284)
T 3cx3_A 277 SILAE 281 (284)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66643
No 356
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=21.63 E-value=1.8e+02 Score=22.64 Aligned_cols=41 Identities=12% Similarity=0.170 Sum_probs=29.1
Q ss_pred HHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEe
Q psy11289 78 QILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIEC 124 (159)
Q Consensus 78 ~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (159)
.+.+.... ..|+|++|.-... . ..++..++++.+++|++..
T Consensus 216 ~~~~~L~~-~rPvIl~G~g~~~----~-~~~~l~~lae~~~~PV~~t 256 (578)
T 3lq1_A 216 KMVTECTG-KKGVFVVGPIDKK----E-LEQPMVDLAKKLGWPILAD 256 (578)
T ss_dssp HHHHHTTT-SCEEEEECSCCCT----T-CHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHhcc-CCeEEEECCCCCh----H-HHHHHHHHHHhcCcEEEEe
Confidence 33444444 6799999976642 1 2467889999999998874
No 357
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=21.47 E-value=1.3e+02 Score=18.83 Aligned_cols=44 Identities=14% Similarity=-0.044 Sum_probs=27.9
Q ss_pred hhcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy11289 51 MRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKAD 98 (159)
Q Consensus 51 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 98 (159)
+...|.+++.+..-...-...+..++..+ ...+++++++++--.
T Consensus 76 l~~yd~iilG~P~~~g~~~~~~~~fl~~~----~l~gk~v~~f~t~g~ 119 (162)
T 3klb_A 76 PEKYEVLFVGFPVWWYIAPTIINTFLESY----DFAGKIVVPFATSGG 119 (162)
T ss_dssp GGGCSEEEEEEECBTTBCCHHHHHHHHTS----CCTTCEEEEEEECSS
T ss_pred hhhCCEEEEEcccccCCCCHHHHHHHHhc----CCCCCEEEEEEEeCC
Confidence 45789999999876543333444444432 346788888887644
No 358
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=21.44 E-value=1e+02 Score=22.37 Aligned_cols=68 Identities=16% Similarity=0.104 Sum_probs=41.0
Q ss_pred hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC--CcCCCCHHHHHHHHHHcCCcEEEeCC
Q psy11289 52 RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD--HQRQVSSMDAQNVARQLRIPYIECSA 126 (159)
Q Consensus 52 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~sa 126 (159)
.++|+++++-....+.+-+.+..++..+... .+.|+++ -| .+ ....++.+...++++.-++--+.-|+
T Consensus 128 ~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a---~~lPiil-Yn---~P~~tg~~l~~e~~~~La~~pnIvgiKdss 197 (332)
T 2r8w_A 128 AGADALLLAPVSYTPLTQEEAYHHFAAVAGA---TALPLAI-YN---NPTTTRFTFSDELLVRLAYIPNIRAIKMPL 197 (332)
T ss_dssp HTCSEEEECCCCSSCCCHHHHHHHHHHHHHH---CSSCEEE-EC---CHHHHCCCCCHHHHHHHHTSTTEEEEEECC
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEE-Ee---CccccCcCCCHHHHHHHHcCCCEEEEEeCC
Confidence 4899999987666555677888888888775 3578775 22 11 11334566666666432333343343
No 359
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=21.29 E-value=1.1e+02 Score=21.78 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=37.2
Q ss_pred hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHH
Q psy11289 52 RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVAR 115 (159)
Q Consensus 52 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 115 (159)
.++|+++++-....+.+-+.+..++..+.... +.|+++ -|- .......++.+...++++
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~---~lPiil-Yn~-P~~tg~~l~~~~~~~La~ 152 (297)
T 2rfg_A 94 AGADAVLCVAGYYNRPSQEGLYQHFKMVHDAI---DIPIIV-YNI-PPRAVVDIKPETMARLAA 152 (297)
T ss_dssp HTCSEEEECCCTTTCCCHHHHHHHHHHHHHHC---SSCEEE-EEC-HHHHSCCCCHHHHHHHHT
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc---CCCEEE-EeC-ccccCCCCCHHHHHHHHc
Confidence 48999999877666567778888888887753 568775 321 000112344666666664
No 360
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=21.27 E-value=1.1e+02 Score=21.72 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=40.0
Q ss_pred hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeC
Q psy11289 52 RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125 (159)
Q Consensus 52 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 125 (159)
.++|+++++-....+.+-+.+..++..+... .+.|+++= |- .......++.+...++++.-++--+.-|
T Consensus 109 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilY-n~-P~~tg~~l~~~~~~~La~~pnIvgiKds 177 (304)
T 3l21_A 109 EGAHGLLVVTPYYSKPPQRGLQAHFTAVADA---TELPMLLY-DI-PGRSAVPIEPDTIRALASHPNIVGVXDA 177 (304)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHTS---CSSCEEEE-EC-HHHHSSCCCHHHHHHHHTSTTEEEEEEC
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE-eC-ccccCCCCCHHHHHHHhcCCCEEEEECC
Confidence 4799999987665555677777777777665 36787763 20 0001233446666666632233334433
No 361
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=20.93 E-value=1.5e+02 Score=17.90 Aligned_cols=38 Identities=11% Similarity=0.132 Sum_probs=23.6
Q ss_pred CCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCC
Q psy11289 86 DEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAK 127 (159)
Q Consensus 86 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 127 (159)
.+.|+|+-..+.+ .........+.+..+|+..+-++.-
T Consensus 46 ~~aPVVlDl~~l~----~~~dl~~L~~~l~~~gl~~vGV~g~ 83 (120)
T 3ghf_A 46 KHAPVVINVSGLE----SPVNWPELHKIVTSTGLRIIGVSGC 83 (120)
T ss_dssp TTCEEEEEEEECC----SSCCHHHHHHHHHTTTCEEEEEESC
T ss_pred CCCcEEEEccccC----ChHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4668777554443 1234566677777778777766653
No 362
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=20.79 E-value=43 Score=21.86 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=24.4
Q ss_pred CCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEe
Q psy11289 86 DEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIEC 124 (159)
Q Consensus 86 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (159)
...|+|++|. .-..+ ..++..++++. ++|++.+
T Consensus 35 AkRPvIl~Gg-v~~~~----A~~eL~~~ae~-~iPVvtT 67 (174)
T 1ytl_A 35 AKRPLLIVGP-DMTDE----MFERVKKFVEK-DITVVAT 67 (174)
T ss_dssp CSSEEEEECS-CCCHH----HHHHHHHHHTS-SSEEEEE
T ss_pred CCCCEEEECC-CCCcc----HHHHHHHHHHc-CCCEEEc
Confidence 5679999998 74321 13566789999 9998876
No 363
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=20.50 E-value=1.4e+02 Score=17.35 Aligned_cols=78 Identities=8% Similarity=0.027 Sum_probs=39.7
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHHHHHcCCcEEEeCCCCCCCH
Q psy11289 53 SGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINV 132 (159)
Q Consensus 53 ~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 132 (159)
..|.+++=++..+.+.++- +..+.+......+|+|++....+ ... ...+...|+.-+-.-. .+.
T Consensus 54 ~~dlii~d~~l~~~~g~~~----~~~l~~~~~~~~~~ii~~s~~~~--------~~~-~~~~~~~g~~~~l~kP---~~~ 117 (143)
T 3cnb_A 54 KPDVVMLDLMMVGMDGFSI----CHRIKSTPATANIIVIAMTGALT--------DDN-VSRIVALGAETCFGKP---LNF 117 (143)
T ss_dssp CCSEEEEETTCTTSCHHHH----HHHHHTSTTTTTSEEEEEESSCC--------HHH-HHHHHHTTCSEEEESS---CCH
T ss_pred CCCEEEEecccCCCcHHHH----HHHHHhCccccCCcEEEEeCCCC--------HHH-HHHHHhcCCcEEEeCC---CCH
Confidence 4566666444333333432 33444422235678888876554 222 2334456766443332 456
Q ss_pred HHHHHHHHHHHHhc
Q psy11289 133 DQAFHELVRIVLLH 146 (159)
Q Consensus 133 ~~~~~~l~~~~~~~ 146 (159)
.++...+-..+...
T Consensus 118 ~~l~~~i~~~~~~~ 131 (143)
T 3cnb_A 118 TLLEKTIKQLVEQK 131 (143)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh
Confidence 67666666555443
No 364
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=20.39 E-value=1.1e+02 Score=21.95 Aligned_cols=70 Identities=10% Similarity=0.056 Sum_probs=42.3
Q ss_pred hcCCEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCcCCCCHHHHHHH-HHHcCCcEEEeCC
Q psy11289 52 RSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNV-ARQLRIPYIECSA 126 (159)
Q Consensus 52 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-~~~~~~~~~~~sa 126 (159)
.++|+++++-....+.+-+.+..++..+.+.. +.|+++ -|- .......++.+...++ ++.-++--+.-|+
T Consensus 118 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~---~lPiil-Yn~-P~~tg~~l~~~~~~~L~a~~pnIvgiKdss 188 (315)
T 3na8_A 118 LGAEAVMVLPISYWKLNEAEVFQHYRAVGEAI---GVPVML-YNN-PGTSGIDMSVELILRIVREVDNVTMVKEST 188 (315)
T ss_dssp TTCSEEEECCCCSSCCCHHHHHHHHHHHHHHC---SSCEEE-EEC-HHHHSCCCCHHHHHHHHHHSTTEEEEEECS
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC---CCcEEE-EeC-cchhCcCCCHHHHHHHHhcCCCEEEEECCC
Confidence 47899999876655556678888888887763 468775 221 0001234456677777 4333444444444
Done!