RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11289
(159 letters)
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 243 bits (624), Expect = 5e-84
Identities = 94/141 (66%), Positives = 112/141 (79%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+SYFV+DYDPTIEDSYTK C +D IPARLDILDTAGQEEF AMREQYMR+G GFLLVF+
Sbjct: 30 IQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFA 89
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ DR SF E+ K QILRVKDRD+FP+++VGNKADL+ QRQV +A + Y
Sbjct: 90 INDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYF 149
Query: 123 ECSAKVRINVDQAFHELVRIV 143
E SAK+R+NVD+AF +LVR V
Sbjct: 150 EASAKLRLNVDEAFEQLVRAV 170
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 243 bits (623), Expect = 6e-84
Identities = 72/147 (48%), Positives = 100/147 (68%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
+ FV DY+PT DSY K+ V+D ++DILDTAGQE+++A+R+ Y RSGEGFL VFS
Sbjct: 39 MYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFS 98
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+T+ SF F QILRVK+ + P L+VGNK+DL+ +RQVS +A+N A Q + Y+
Sbjct: 99 ITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYV 158
Query: 123 ECSAKVRINVDQAFHELVRIVLLHTKQ 149
E SAK R NVD+ F +L+R + +
Sbjct: 159 ETSAKTRANVDKVFFDLMREIRARKME 185
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 242 bits (620), Expect = 9e-84
Identities = 61/139 (43%), Positives = 100/139 (71%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
+ F+ YDPTIED Y K+ +D P+ L+ILDTAG E+F++MR+ Y+++G+GF+LV+S
Sbjct: 24 VTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYS 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ ++ SF++I QI+RVK ++ P+++VGNK DL+ +R+VSS + + +A + P++
Sbjct: 84 LVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFM 143
Query: 123 ECSAKVRINVDQAFHELVR 141
E SAK + VD+ F E+VR
Sbjct: 144 ETSAKSKTMVDELFAEIVR 162
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 242 bits (620), Expect = 2e-83
Identities = 47/141 (33%), Positives = 78/141 (55%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
+E FV YDPTIE+++TK ++ L ++DTAGQ+E+S + Y G++LV+S
Sbjct: 27 VEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYS 86
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
VT SFE I H ++L + + + P+++VGNK DL +R +S + + +A ++
Sbjct: 87 VTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFL 146
Query: 123 ECSAKVRINVDQAFHELVRIV 143
E SAK F ++
Sbjct: 147 ESSAKENQTAVDVFRRIILEA 167
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 241 bits (618), Expect = 2e-83
Identities = 72/141 (51%), Positives = 99/141 (70%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
+ FV DY+PT DSY K+ V+D ++DILDTAGQE+++A+R+ Y RSGEGFL VFS
Sbjct: 25 MYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFS 84
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+T+ SF F QILRVK+ + P L+VGNK+DL+ +RQVS +A+N A Q + Y+
Sbjct: 85 ITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYV 144
Query: 123 ECSAKVRINVDQAFHELVRIV 143
E SAK R NVD+ F +L+R +
Sbjct: 145 ETSAKTRANVDKVFFDLMREI 165
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 242 bits (620), Expect = 4e-83
Identities = 72/147 (48%), Positives = 100/147 (68%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
+ FV DY+PT DSY K+ V+D ++DILDTAGQE+++A+R+ Y RSGEGFL VFS
Sbjct: 35 MYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFS 94
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+T+ SF F QILRVK+ + P L+VGNK+DL+ +RQVS +A+N A Q + Y+
Sbjct: 95 ITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYV 154
Query: 123 ECSAKVRINVDQAFHELVRIVLLHTKQ 149
E SAK R NVD+ F +L+R + +
Sbjct: 155 ETSAKTRANVDKVFFDLMREIRARKME 181
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 241 bits (617), Expect = 1e-82
Identities = 41/141 (29%), Positives = 82/141 (58%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
+E F YDPT+E++Y+K + L ++DTAGQ+E+S + ++ G++LV+S
Sbjct: 45 VEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYS 104
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
VT +SF+ I ++++ + P+++VGNKADL +R+V +++ + +A ++
Sbjct: 105 VTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFM 164
Query: 123 ECSAKVRINVDQAFHELVRIV 143
E SA+ F ++++ +
Sbjct: 165 ESSARENQLTQGIFTKVIQEI 185
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 239 bits (613), Expect = 1e-82
Identities = 41/140 (29%), Positives = 69/140 (49%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
+Y + V+D A L + D Q+ + M G+ +++V+SVTD+
Sbjct: 26 EDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDK 85
Query: 67 NSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSA 126
SFE+ + Q+ R + D+ P+++VGNK+DL R+VS + + A +IE SA
Sbjct: 86 GSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSA 145
Query: 127 KVRINVDQAFHELVRIVLLH 146
+ NV F +VR + L
Sbjct: 146 ALHHNVQALFEGVVRQIRLR 165
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 238 bits (610), Expect = 6e-82
Identities = 85/142 (59%), Positives = 109/142 (76%), Gaps = 1/142 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
+ FV DYDPTIEDSY K ID+ A LD+LDTAGQEEFSAMREQYMR+G+GFL+V+S
Sbjct: 39 FQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYS 98
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
VTD+ SFE + +FH+ ILRVKDR+ FPM++V NK DL H R+V+ + +A + IPYI
Sbjct: 99 VTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYI 158
Query: 123 ECSAKV-RINVDQAFHELVRIV 143
E SAK +NVD+ FH+LVR++
Sbjct: 159 ETSAKDPPLNVDKTFHDLVRVI 180
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 237 bits (606), Expect = 2e-81
Identities = 51/142 (35%), Positives = 80/142 (56%), Gaps = 1/142 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
++ F Y PT+ED+Y + D L I DT G +F AM+ + G F+LV+S
Sbjct: 24 VKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 83
Query: 63 VTDRNSFEEIYKFHRQILRVK-DRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPY 121
+T R S EE+ + QI +K D + P+++VGNK D R+V S +A+ +AR + +
Sbjct: 84 ITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAF 143
Query: 122 IECSAKVRINVDQAFHELVRIV 143
+E SAK+ NV + F EL+ +
Sbjct: 144 METSAKLNHNVKELFQELLNLE 165
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 236 bits (604), Expect = 3e-81
Identities = 69/142 (48%), Positives = 101/142 (71%), Gaps = 1/142 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
++ FV YDPTIEDSY KQ +D L+ILDTAG E+F+AMR+ YM++G+GF LV+S
Sbjct: 24 VQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYS 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQ-LRIPY 121
+T +++F ++ QILRVKD ++ PM++VGNK DL+ +R V QN+ARQ +
Sbjct: 84 ITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAF 143
Query: 122 IECSAKVRINVDQAFHELVRIV 143
+E SAK +INV++ F++LVR +
Sbjct: 144 LESSAKSKINVNEIFYDLVRQI 165
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 236 bits (604), Expect = 6e-81
Identities = 82/141 (58%), Positives = 105/141 (74%), Gaps = 1/141 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 25 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 84
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+ + QI RVKD ++ PM++VGNK DL R V + AQ++AR IP+I
Sbjct: 85 INNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFI 143
Query: 123 ECSAKVRINVDQAFHELVRIV 143
E SAK R VD AF+ LVR +
Sbjct: 144 ETSAKTRQGVDDAFYTLVREI 164
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 235 bits (601), Expect = 7e-81
Identities = 83/141 (58%), Positives = 106/141 (75%), Gaps = 1/141 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV + DPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 24 IQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 83
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SFE+I+++ QI RVKD D+ PM++VGNK+DL R V S AQ++AR IPYI
Sbjct: 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA-ARTVESRQAQDLARSYGIPYI 142
Query: 123 ECSAKVRINVDQAFHELVRIV 143
E SAK R V+ AF+ LVR +
Sbjct: 143 ETSAKTRQGVEDAFYTLVREI 163
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 235 bits (602), Expect = 1e-80
Identities = 80/150 (53%), Positives = 104/150 (69%), Gaps = 1/150 (0%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
I+++FV +YDPTIEDSY KQ VID LDILDTAGQEE+SAMR+QYMR+GEGFL VF+
Sbjct: 42 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 101
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ + SF +I + QI RVKD D+ PM++VGNK DL R V + A +A+ IP+I
Sbjct: 102 INNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFI 160
Query: 123 ECSAKVRINVDQAFHELVRIVLLHTKQCKN 152
E SAK R V+ AF+ LVR + + + N
Sbjct: 161 ETSAKTRQGVEDAFYTLVREIRQYRMKKLN 190
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 233 bits (596), Expect = 6e-80
Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 2/149 (1%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEF--SAMREQYMRSGEGFLLV 60
++ ED Y + +D L ++DT E+ S +E ++ G +++V
Sbjct: 25 AGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIV 84
Query: 61 FSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIP 120
+S+ DR SFE + Q+ R D P+++VGNKADL R+VS + + A
Sbjct: 85 YSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCK 144
Query: 121 YIECSAKVRINVDQAFHELVRIVLLHTKQ 149
+IE SA ++ NV + F +VR + L +
Sbjct: 145 FIETSATLQHNVAELFEGVVRQLRLRRRD 173
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 231 bits (591), Expect = 8e-79
Identities = 42/149 (28%), Positives = 80/149 (53%), Gaps = 2/149 (1%)
Query: 3 IESYFVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSA-MREQYMRSGEGFLLV 60
+ ++P ED+Y ++ ++D L + D Q + +R+ +++G+ FL+V
Sbjct: 44 GGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIV 103
Query: 61 FSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIP 120
FSVTDR SF ++ + ++ + + P+++VGNK+DL R+VS + +++A L
Sbjct: 104 FSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK 163
Query: 121 YIECSAKVRINVDQAFHELVRIVLLHTKQ 149
+IE SA + N + F VR + L +
Sbjct: 164 HIETSAALHHNTRELFEGAVRQIRLRRGR 192
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 230 bits (589), Expect = 1e-78
Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 2/148 (1%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
++ F Y PTIED+Y + D L I DT G +F AM+ + G F+LVFS
Sbjct: 29 VKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFS 88
Query: 63 VTDRNSFEEIYKFHRQILRVKDR-DEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPY 121
VT + S EE+ ++ I+++K ++ P+++VGNK D QR+V + +AQ VA++ + +
Sbjct: 89 VTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET-QREVDTREAQAVAQEWKCAF 147
Query: 122 IECSAKVRINVDQAFHELVRIVLLHTKQ 149
+E SAK+ NV + F EL+ +
Sbjct: 148 METSAKMNYNVKELFQELLTLETRRNMS 175
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 228 bits (585), Expect = 2e-78
Identities = 40/146 (27%), Positives = 77/146 (52%), Gaps = 2/146 (1%)
Query: 3 IESYFVTDYDPT-IEDSYTKQCVIDDIPARLDILDTAGQEEFSA-MREQYMRSGEGFLLV 60
++ ED+Y ++ ++D L + D Q + +++ +++G+ FL+V
Sbjct: 23 GGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIV 82
Query: 61 FSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIP 120
FSVTDR SF ++ + ++ + + P+++VGNK+DL R+VS + +++A L
Sbjct: 83 FSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK 142
Query: 121 YIECSAKVRINVDQAFHELVRIVLLH 146
+IE SA + N + F VR + L
Sbjct: 143 HIETSAALHHNTRELFEGAVRQIRLR 168
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 227 bits (582), Expect = 1e-77
Identities = 62/142 (43%), Positives = 89/142 (62%), Gaps = 2/142 (1%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
+ F+ +YDPT+E +Y Q IDD ++ILDTAGQE+ RE +MR GEGF+LV+
Sbjct: 49 LTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDT-IQREGHMRWGEGFVLVYD 107
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+TDR SFEE+ + +K +++VGNKADLDH RQVS+ + + +A +L +
Sbjct: 108 ITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFY 167
Query: 123 ECSAKV-RINVDQAFHELVRIV 143
ECSA N+ + F+EL R V
Sbjct: 168 ECSACTGEGNITEIFYELCREV 189
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 223 bits (571), Expect = 1e-75
Identities = 46/146 (31%), Positives = 81/146 (55%), Gaps = 5/146 (3%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPAR---LDILDTAGQEEFSAMREQYMRSGEGFLLVFSV 63
+D + ED+Y + ++D A LD+ + G+ E+ + + M+ G+ +L+V+S+
Sbjct: 64 MDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSI 121
Query: 64 TDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIE 123
TDR SFE+ + Q+ R + ++ P+++VGNK+DL R+VS + + A +IE
Sbjct: 122 TDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIE 181
Query: 124 CSAKVRINVDQAFHELVRIVLLHTKQ 149
SA V+ NV + F +VR V L
Sbjct: 182 TSAAVQHNVKELFEGIVRQVRLRRDS 207
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 217 bits (555), Expect = 2e-73
Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 4/144 (2%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
+ F+++YDP +ED+Y+ + +D P L ++DTA + E+Y+ FL+V+S
Sbjct: 42 LTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYS 100
Query: 63 VTDRNSFEEIYKFHRQI-LRVKDRDE-FPMLMVGNKADLDHQRQVSSMDAQNVARQLRIP 120
V R SF+ + + L K+ P L++GNK D+ RQV+ + +A +
Sbjct: 101 VDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCL 160
Query: 121 YIECSAKVRI-NVDQAFHELVRIV 143
+ E SA + +V FHE VR
Sbjct: 161 FFEVSACLDFEHVQHVFHEAVREA 184
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 211 bits (538), Expect = 6e-71
Identities = 46/146 (31%), Positives = 81/146 (55%), Gaps = 5/146 (3%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPA---RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSV 63
+D + ED+Y + ++D A LD+ + G+ E+ + + M+ G+ +L+V+S+
Sbjct: 33 MDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSI 90
Query: 64 TDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIE 123
TDR SFE+ + Q+ R + ++ P+++VGNK+DL R+VS + + A +IE
Sbjct: 91 TDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIE 150
Query: 124 CSAKVRINVDQAFHELVRIVLLHTKQ 149
SA V+ NV + F +VR V L
Sbjct: 151 TSAAVQHNVKELFEGIVRQVRLRRDS 176
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 208 bits (532), Expect = 4e-70
Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 9/150 (6%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
+ +V + P + K+ V+D L I D G E Q+ + + VFS
Sbjct: 41 LTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPEL-----QFAAWVDAVVFVFS 94
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLD--HQRQVSSMDAQNVARQL-RI 119
+ D SF+ +Y + ++ ++ E PM++VG + + + R + A+ ++ L R
Sbjct: 95 LEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRC 154
Query: 120 PYIECSAKVRINVDQAFHELVRIVLLHTKQ 149
Y E A +NV++ F ++ + V+ K+
Sbjct: 155 TYYETCATYGLNVERVFQDVAQKVVALRKK 184
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 185 bits (473), Expect = 3e-61
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
Query: 7 FVTD----YDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
F+T + T + Y K+ ++D + I + AG + ++ + + VFS
Sbjct: 27 FLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFVFS 81
Query: 63 VTDRNSFEEIYKFHRQI--LRVKDRDEFPMLMVG--NKADLDHQRQVSSMDAQNV-ARQL 117
+ D NSF+ + + H Q+ LR + R + +VG ++ R V A+ + A
Sbjct: 82 LEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMK 141
Query: 118 RIPYIECSAKVRINVDQAFHELVRIVLLHTKQ 149
R Y E A +NVD+ F E+ + V+ KQ
Sbjct: 142 RCSYYETXATYGLNVDRVFQEVAQKVVTLRKQ 173
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 177 bits (450), Expect = 2e-57
Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 10/160 (6%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
+ F TDY PT+ D+++ +D L + DTAGQE++S +R R + F+L FS
Sbjct: 30 TSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS 89
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADL--------DHQRQVSSMDAQNVA 114
+ + S+E + K LR + P+++VG K DL DH ++S + +
Sbjct: 90 LISKASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELR 148
Query: 115 RQLR-IPYIECSAKVRINVDQAFHELVRIVLLHTKQCKNS 153
+Q+ YIECS+K + NV F +++VL ++ +
Sbjct: 149 KQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEVP 188
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 153 bits (388), Expect = 2e-47
Identities = 31/149 (20%), Positives = 62/149 (41%), Gaps = 9/149 (6%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDI--PARLDILDTAGQEEFSAMREQYMRSG----EG 56
I+ + T Y K+ + +L T ++ M G +G
Sbjct: 106 IDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDG 165
Query: 57 FLLVFSVT--DRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVA 114
FLL V+ +F++ KF + + + P+++V K D +R + ++
Sbjct: 166 FLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALS 225
Query: 115 RQLRIPYIECSAKVRINVDQAFHELVRIV 143
++ + +E SA+ +NVD AF LV+++
Sbjct: 226 KK-NLQVVETSARSNVNVDLAFSTLVQLI 253
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 139 bits (352), Expect = 1e-42
Identities = 42/160 (26%), Positives = 78/160 (48%), Gaps = 14/160 (8%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
+ + T+Y PT D+++ +D P RL + DTAGQ+EF +R + + FLL FS
Sbjct: 41 TTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFS 100
Query: 63 VTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDA 110
V +SF+ + + +R P+++VG ++DL ++ V A
Sbjct: 101 VVSPSSFQNVSEKWVPEIRCHCPK-APIILVGTQSDLREDVKVLIELDKCKEKPVPEEAA 159
Query: 111 QNVARQLR-IPYIECSAKVRINVDQAFHELVRIVLLHTKQ 149
+ +A +++ YIECSA + N+ + F + + ++
Sbjct: 160 KLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSDT 199
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 137 bits (347), Expect = 1e-41
Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 3/140 (2%)
Query: 7 FVTDYDPTI--EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVT 64
F +Y+ T+ + + ++ DTAGQE+ + +++ Y G +L F VT
Sbjct: 36 FEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVT 95
Query: 65 DRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIEC 124
R + + + ++ ++ V + P+++ NK D+ +++++S V + Y E
Sbjct: 96 SRITCQNLARWVKEFQAVVGNE-APIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEI 154
Query: 125 SAKVRINVDQAFHELVRIVL 144
SAK N F L RI
Sbjct: 155 SAKTAHNFGLPFLHLARIFT 174
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 132 bits (334), Expect = 5e-40
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 6/149 (4%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
T Y PT+ ++++ + L + DTAGQEE+ +R + LL F+V +R
Sbjct: 48 IPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNR 107
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL--DHQRQVSSMDAQNVARQLR-IPYI 122
SF+ I K+ +I D ++VG K DL D V+ + ++ ++L + YI
Sbjct: 108 TSFDNISTKWEPEIKHYIDT--AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYI 165
Query: 123 ECSAKVRINVDQAFHELVRIVLLHTKQCK 151
E S+ +I +++ F + V + + K
Sbjct: 166 EASSVAKIGLNEVFEKSVDCIFSNKPVPK 194
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 129 bits (328), Expect = 2e-39
Identities = 48/139 (34%), Positives = 75/139 (53%), Gaps = 3/139 (2%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F DY TI D +Q ++D RL + DTAGQEEF A+ + Y R + +LVFS TD
Sbjct: 30 FTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTD 89
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
R SFE I + +++ + + P +V NK DL + + +A+ +A++L++ + S
Sbjct: 90 RESFEAISSWREKVVA--EVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTS 147
Query: 126 AKVRINVDQAFHELVRIVL 144
K +NV + F L L
Sbjct: 148 VKEDLNVSEVFKYLAEKHL 166
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 128 bits (323), Expect = 2e-38
Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 2/139 (1%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F + T+ D K D +L I DTAGQE + + Y R GFLL++ + +
Sbjct: 47 FTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIAN 106
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
+ SF + + QI + +L VGNK DL+ +R V + D + +A L + E S
Sbjct: 107 QESFAAVQDWATQIKTYSWDNAQVIL-VGNKCDLEDERVVPAEDGRRLADDLGFEFFEAS 165
Query: 126 AKVRINVDQAFHELVRIVL 144
AK INV Q F LV ++
Sbjct: 166 AKENINVKQVFERLVDVIC 184
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 126 bits (320), Expect = 9e-38
Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 2/139 (1%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
+ Y TI D + +D +L I DTAGQE F + Y R G ++V+ VTD
Sbjct: 58 YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD 117
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
+ SF + ++ ++I R + +L VGNK DL ++ V A+ A L IP++E S
Sbjct: 118 QESFNNVKQWLQEIDRYASENVNKLL-VGNKCDLTTKKVVDYTTAKEFADSLGIPFLETS 176
Query: 126 AKVRINVDQAFHELVRIVL 144
AK NV+Q+F + +
Sbjct: 177 AKNATNVEQSFMTMAAEIK 195
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 126 bits (319), Expect = 1e-37
Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 2/139 (1%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
+ Y TI D + +D +L I DTAGQE F + Y R G ++V+ VTD
Sbjct: 41 YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD 100
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
+ SF + ++ ++I R + +L VGNK DL ++ V A+ A L IP++E S
Sbjct: 101 QESFNNVKQWLQEIDRYASENVNKLL-VGNKCDLTTKKVVDYTTAKEFADSLGIPFLETS 159
Query: 126 AKVRINVDQAFHELVRIVL 144
AK NV+Q+F + +
Sbjct: 160 AKNATNVEQSFMTMAAEIK 178
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 126 bits (318), Expect = 1e-37
Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 2/139 (1%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F + T+ D K + +L I DTAGQE + + Y R GF+L++ +T+
Sbjct: 48 FTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN 107
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
SF + + QI + +L VGNK D++ +R V + Q +A QL + E S
Sbjct: 108 EESFNAVQDWATQIKTYSWDNAQVIL-VGNKCDMEEERVVPTEKGQLLAEQLGFDFFEAS 166
Query: 126 AKVRINVDQAFHELVRIVL 144
AK I+V QAF LV +
Sbjct: 167 AKENISVRQAFERLVDAIC 185
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 126 bits (319), Expect = 1e-37
Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 2/139 (1%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F + T+ D K +D +L I DTAG E + + Y R GF+L++ +T+
Sbjct: 33 FTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITN 92
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
SF + + QI + +L VGNK D++ +R VSS + +A L + E S
Sbjct: 93 EESFNAVQDWSTQIKTYSWDNAQVLL-VGNKCDMEDERVVSSERGRQLADHLGFEFFEAS 151
Query: 126 AKVRINVDQAFHELVRIVL 144
AK INV Q F LV ++
Sbjct: 152 AKDNINVKQTFERLVDVIC 170
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 125 bits (317), Expect = 2e-37
Identities = 48/139 (34%), Positives = 71/139 (51%), Gaps = 2/139 (1%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F + + TI D + +D +L I DTAGQE F + Y R G +LV+ +T+
Sbjct: 33 FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITN 92
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
SF+ I + R I D M+ +GNK D++ +RQVS + +A I ++E S
Sbjct: 93 EKSFDNIRNWIRNIEEHASADVEKMI-LGNKCDVNDKRQVSKERGEKLALDYGIKFMETS 151
Query: 126 AKVRINVDQAFHELVRIVL 144
AK INV+ AF L R +
Sbjct: 152 AKANINVENAFFTLARDIK 170
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 125 bits (316), Expect = 2e-37
Identities = 54/143 (37%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F T TI + K +D + I DTAGQE F ++R + R + LL FSV D
Sbjct: 32 FDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDD 91
Query: 66 RNSFEEIYKFHRQILR---VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQL-RIPY 121
SF+ + + ++ + VK+ + FP +++GNK D+ RQVS+ +AQ R PY
Sbjct: 92 SQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPY 150
Query: 122 IECSAKVRINVDQAFHELVRIVL 144
E SAK NV AF E VR VL
Sbjct: 151 FETSAKDATNVAAAFEEAVRRVL 173
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 125 bits (317), Expect = 3e-37
Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 4/142 (2%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F Y TI D TK+ ++DD + I DTAGQE F ++ + R + +LVF VT
Sbjct: 33 FSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTA 92
Query: 66 RNSFEEIYKFHRQILR---VKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
N+F+ + + + L +D + FP +++GNK DL++++ + + IPY
Sbjct: 93 PNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYF 152
Query: 123 ECSAKVRINVDQAFHELVRIVL 144
E SAK INV+QAF + R L
Sbjct: 153 ETSAKEAINVEQAFQTIARNAL 174
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 125 bits (317), Expect = 4e-37
Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 11/159 (6%)
Query: 7 FVTDYDPTI-----------EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGE 55
F + T+ L + DTAGQE F ++ + R
Sbjct: 50 FNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAM 109
Query: 56 GFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVAR 115
GFLL+F +T + SF + + Q+ + ++++GNKADL QR+V+ A+ +A
Sbjct: 110 GFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD 169
Query: 116 QLRIPYIECSAKVRINVDQAFHELVRIVLLHTKQCKNST 154
+ IPY E SA NV++A L+ +++ +QC T
Sbjct: 170 KYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCVEKT 208
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 125 bits (315), Expect = 4e-37
Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 2/139 (1%)
Query: 7 FVTDYDPTIE-DSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F +D TI + + ID +L I DTAGQE F ++ Y R G LLV+ +T
Sbjct: 46 FQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR 105
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
R +F + + + + ML +GNK+DL+ +R V + + AR+ + ++E S
Sbjct: 106 RETFNHLTSWLEDARQHSSSNMVIML-IGNKSDLESRRDVKREEGEAFAREHGLIFMETS 164
Query: 126 AKVRINVDQAFHELVRIVL 144
AK NV++AF + +
Sbjct: 165 AKTACNVEEAFINTAKEIY 183
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 125 bits (316), Expect = 4e-37
Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
+ DY TI D K +D +L I DTAGQE F + Y R G ++V+ VTD
Sbjct: 33 YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTD 92
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
+ SF + + ++I R +L VGNK DL +R V A+ A ++P++E S
Sbjct: 93 QESFNGVKMWLQEIDRYATSTVLKLL-VGNKCDLKDKRVVEYDVAKEFADANKMPFLETS 151
Query: 126 AKVRINVDQAFHELVRIVL 144
A NV+ AF + R +
Sbjct: 152 ALDSTNVEDAFLTMARQIK 170
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 125 bits (316), Expect = 7e-37
Identities = 35/139 (25%), Positives = 72/139 (51%), Gaps = 5/139 (3%)
Query: 7 FVTDYDPTIE-DSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F Y T+ + + + P + ++ DTAGQE+F +R+ Y + +++F VT
Sbjct: 40 FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS 99
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
R +++ + +HR ++RV + P+++ GNK D+ ++ + + R+ + Y + S
Sbjct: 100 RVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDIS 155
Query: 126 AKVRINVDQAFHELVRIVL 144
AK N ++ F L R ++
Sbjct: 156 AKSNYNFEKPFLWLARKLI 174
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 124 bits (313), Expect = 7e-37
Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 2/139 (1%)
Query: 7 FVTDYDPTIE-DSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F D + TI + +K + +L I DTAGQE F ++ Y R G LLV+ +T
Sbjct: 35 FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS 94
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
R ++ + + + ++ +L GNK DLD R+V+ ++A A++ + ++E S
Sbjct: 95 RETYNALTNWLTDARMLASQNIVIIL-CGNKKDLDADREVTFLEASRFAQENELMFLETS 153
Query: 126 AKVRINVDQAFHELVRIVL 144
A NV++AF + R +L
Sbjct: 154 ALTGENVEEAFVQCARKIL 172
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 123 bits (312), Expect = 9e-37
Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 3/139 (2%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F Y TI D + I+ +L I DTAGQE F + Y R G ++V+ VT
Sbjct: 34 FSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTS 93
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
SF + ++ +I + D+ ++VGNK D ++ V + DA A Q+ I E S
Sbjct: 94 AESFVNVKRWLHEINQN--CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETS 151
Query: 126 AKVRINVDQAFHELVRIVL 144
AK +NV++ F+ + +VL
Sbjct: 152 AKENVNVEEMFNCITELVL 170
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 123 bits (312), Expect = 1e-36
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 2/139 (1%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F + TI + T+ +D + I DTAGQE + + Y R G LLV+ +
Sbjct: 30 FNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAK 89
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
++E + ++ +++ D + ML VGNK+DL H R V + +A+ A + + +IE S
Sbjct: 90 HLTYENVERWLKELRDHADSNIVIML-VGNKSDLRHLRAVPTDEARAFAEKNNLSFIETS 148
Query: 126 AKVRINVDQAFHELVRIVL 144
A NV++AF ++ +
Sbjct: 149 ALDSTNVEEAFKNILTEIY 167
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 123 bits (311), Expect = 2e-36
Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 2/139 (1%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F + TI D K +D A+L I DTAGQE F + Y R +G +LV+ VT
Sbjct: 40 FDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTR 99
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
R++F ++ + ++ R++ ++VGNK D R+V + AR+ + +IE S
Sbjct: 100 RDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK-ENREVDRNEGLKFARKHSMLFIEAS 158
Query: 126 AKVRINVDQAFHELVRIVL 144
AK V AF ELV ++
Sbjct: 159 AKTCDGVQCAFEELVEKII 177
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 123 bits (312), Expect = 2e-36
Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F TI D K I+ +L I DTAGQE F ++ + Y RS +L + +T
Sbjct: 51 FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITC 110
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
SF + ++ R+I + +L VGNK DL +R+VS A+ + + Y+E S
Sbjct: 111 EESFRCLPEWLREIEQYASNKVITVL-VGNKIDLAERREVSQQRAEEFSEAQDMYYLETS 169
Query: 126 AKVRINVDQAFHELVRIVL 144
AK NV++ F +L ++
Sbjct: 170 AKESDNVEKLFLDLACRLI 188
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 123 bits (312), Expect = 2e-36
Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 2/139 (1%)
Query: 7 FVTDYDPTIE-DSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F D + TI + ++ + +L I DTAGQE F ++ Y R G LLV+ +T
Sbjct: 50 FKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS 109
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
R ++ + + + + +L GNK DLD +R+V+ ++A A++ + ++E S
Sbjct: 110 RETYNSLAAWLTDARTLASPNIVVIL-CGNKKDLDPEREVTFLEASRFAQENELMFLETS 168
Query: 126 AKVRINVDQAFHELVRIVL 144
A NV++AF + R +L
Sbjct: 169 ALTGENVEEAFLKCARTIL 187
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 123 bits (310), Expect = 2e-36
Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 2/139 (1%)
Query: 7 FVTDYDPTIE-DSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F+ D TI + T+ + +L I DTAGQE F A+ Y R G L+V+ +T
Sbjct: 40 FMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR 99
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
R+++ + + + + + +L +GNKADL+ QR V+ +A+ A + + ++E S
Sbjct: 100 RSTYNHLSSWLTDARNLTNPNTVIIL-IGNKADLEAQRDVTYEEAKQFAEENGLLFLEAS 158
Query: 126 AKVRINVDQAFHELVRIVL 144
AK NV+ AF E + +
Sbjct: 159 AKTGENVEDAFLEAAKKIY 177
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 123 bits (310), Expect = 2e-36
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F D TI + T+ ++ + I DTAG E + A+ Y R G LLVF +T
Sbjct: 50 FSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTK 109
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
++ + ++ +++ + ML VGNK+DL R+V + +A+ A + ++E S
Sbjct: 110 HQTYAVVERWLKELYDHAEATIVVML-VGNKSDLSQAREVPTEEARMFAENNGLLFLETS 168
Query: 126 AKVRINVDQAFHELVRIVL 144
A NV+ AF +++ +
Sbjct: 169 ALDSTNVELAFETVLKEIF 187
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 122 bits (309), Expect = 3e-36
Identities = 44/154 (28%), Positives = 79/154 (51%), Gaps = 14/154 (9%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
+ F TDY PT+ D+++ V++ L + DTAGQE+++ +R R + F+L FS
Sbjct: 29 TSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 88
Query: 63 VTDRNSFEEIYKFHRQILRVKDR-DEFPMLMVGNKADL----------DHQRQVSSMDAQ 111
+ + S+E + + I +K P+++VG K DL ++++ +
Sbjct: 89 LISKASYENVS--KKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGE 146
Query: 112 NVARQLRIP-YIECSAKVRINVDQAFHELVRIVL 144
+ + + P YIECS+K + NV F +R+VL
Sbjct: 147 ELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 123 bits (310), Expect = 3e-36
Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 7 FVTDYDPTIE-DSYTKQCVIDDIPA----------RLDILDTAGQEEFSAMREQYMRSGE 55
F + + T+ D K+ V L + DTAG E F ++ + R
Sbjct: 36 FNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAM 95
Query: 56 GFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVAR 115
GFLL+F +T+ SF + + Q+ + +++ GNK+DL+ QR V +A+ +A
Sbjct: 96 GFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAE 155
Query: 116 QLRIPYIECSAKVRINVDQAFHELVRIVL 144
+ IPY E SA N+ A L+ +++
Sbjct: 156 KYGIPYFETSAANGTNISHAIEMLLDLIM 184
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 122 bits (309), Expect = 3e-36
Identities = 53/145 (36%), Positives = 78/145 (53%), Gaps = 7/145 (4%)
Query: 7 FVTDYDPTI-EDSYTKQCVID-DIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVT 64
+ Y TI D TK+ +D D A + + DTAGQE F ++ + R + +LV+ VT
Sbjct: 33 YSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVT 92
Query: 65 DRNSFEEIYKFHRQILR---VKDRDEFPMLMVGNKADLDH-QRQVSSMDAQNVARQL-RI 119
+ +SFE I + + L V + FP +++GNK D + ++ VS AQ +A+ L I
Sbjct: 93 NASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDI 152
Query: 120 PYIECSAKVRINVDQAFHELVRIVL 144
P SAK INVD AF E+ R L
Sbjct: 153 PLFLTSAKNAINVDTAFEEIARSAL 177
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 122 bits (308), Expect = 4e-36
Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 2/141 (1%)
Query: 5 SYFVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSV 63
++ + T+ D K +D + +L + DTAGQE F ++ Y R LL++ V
Sbjct: 34 AFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDV 93
Query: 64 TDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIE 123
T++ SF+ I + +I D ML +GNK D H+R V D + +A++ +P++E
Sbjct: 94 TNKASFDNIQAWLTEIHEYAQHDVALML-LGNKVDSAHERVVKREDGEKLAKEYGLPFME 152
Query: 124 CSAKVRINVDQAFHELVRIVL 144
SAK +NVD AF + + +
Sbjct: 153 TSAKTGLNVDLAFTAIAKELK 173
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 121 bits (306), Expect = 6e-36
Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 4/142 (2%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDD-IPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVT 64
F Y TI D + ++ + + L I D GQ M ++Y+ +G LLV+ +T
Sbjct: 31 FGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDIT 90
Query: 65 DRNSFEEIYKFHRQILRV-KDRDEFPMLM-VGNKADLDHQRQVSSMDAQNVARQLRIPYI 122
+ SFE + ++ + +V ++ + P++ VGNK DL+H R + ++
Sbjct: 91 NYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSH 150
Query: 123 ECSAKVRINVDQAFHELVRIVL 144
SAK +V F ++ +L
Sbjct: 151 FVSAKTGDSVFLCFQKVAAEIL 172
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 121 bits (305), Expect = 8e-36
Identities = 45/139 (32%), Positives = 74/139 (53%), Gaps = 3/139 (2%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F + TI D K I+ +L I DTAGQE F + Y R G +LV+ +TD
Sbjct: 28 FNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD 87
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
+F I ++ + + + + +L VGNK+D+ R V++ + +A++L IP+IE S
Sbjct: 88 ERTFTNIKQWFKTVNEHANDEAQLLL-VGNKSDM-ETRVVTADQGEALAKELGIPFIESS 145
Query: 126 AKVRINVDQAFHELVRIVL 144
AK NV++ F L +++
Sbjct: 146 AKNDDNVNEIFFTLAKLIQ 164
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 122 bits (307), Expect = 1e-35
Identities = 45/139 (32%), Positives = 74/139 (53%), Gaps = 3/139 (2%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F + TI D K I+ +L + DTAGQE F + Y R G +LV+ VTD
Sbjct: 45 FNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTD 104
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
+F I ++ + + + + +L VGNK+D+ R V++ + +A++L IP+IE S
Sbjct: 105 ERTFTNIKQWFKTVNEHANDEAQLLL-VGNKSDM-ETRVVTADQGEALAKELGIPFIESS 162
Query: 126 AKVRINVDQAFHELVRIVL 144
AK NV++ F L +++
Sbjct: 163 AKNDDNVNEIFFTLAKLIQ 181
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 121 bits (306), Expect = 1e-35
Identities = 45/140 (32%), Positives = 75/140 (53%), Gaps = 3/140 (2%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F T+ D K + RL I DTAGQE F+++ Y RS +G +LV+ +T
Sbjct: 51 FCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITK 110
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLR-IPYIEC 124
+ +F+++ K+ + I + D +L VGNK D + R+++ + A+Q+ + + E
Sbjct: 111 KETFDDLPKWMKMIDKYASEDAELLL-VGNKLDCETDREITRQQGEKFAQQITGMRFCEA 169
Query: 125 SAKVRINVDQAFHELVRIVL 144
SAK NVD+ F +LV +L
Sbjct: 170 SAKDNFNVDEIFLKLVDDIL 189
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 121 bits (306), Expect = 1e-35
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 16/164 (9%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
+ F Y PT+ ++Y +D L + DTAGQE++ +R + L+ FS
Sbjct: 46 SKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 105
Query: 63 VTDRNSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADLDH------------QRQVSSMD 109
V +S E I K+ ++ P+++V NK DL Q V + D
Sbjct: 106 VDSPDSLENIPEKWVPEVK--HFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDD 163
Query: 110 AQNVARQLR-IPYIECSAKVRINVDQAFHELVRIVLLHTKQCKN 152
+ +A +++ Y+ECSAK + V + F R L +N
Sbjct: 164 GRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRYGSQN 207
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 120 bits (303), Expect = 2e-35
Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F + TI + T+ +D + I DTAG E + A+ Y R G LLV+ +
Sbjct: 54 FNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAK 113
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
++E + ++ +++ D + ML VGNK+DL H R V + +A+ A + + +IE S
Sbjct: 114 HLTYENVERWLKELRDHADSNIVIML-VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETS 172
Query: 126 AKVRINVDQAFHELVRIV 143
A NV+ AF ++ +
Sbjct: 173 ALDSTNVEAAFQTILTEI 190
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 120 bits (302), Expect = 4e-35
Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 5/145 (3%)
Query: 7 FVTDYDPTIE-DSYTKQCVIDDIPARLDILDTAGQEEF-SAMREQYMRSGEGFLLVFSVT 64
F + TI D + ID ++ + DTAGQE F +M + Y R+ + V+ +T
Sbjct: 45 FPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMT 104
Query: 65 DRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIEC 124
+ SF + + + + ++ P ++VGNK DL QV + AQ A +P E
Sbjct: 105 NMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFET 164
Query: 125 SAKVR---INVDQAFHELVRIVLLH 146
SAK +V+ F L + H
Sbjct: 165 SAKNPNDNDHVEAIFMTLAHKLKSH 189
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 119 bits (301), Expect = 6e-35
Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 3/140 (2%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F TI D K I +L I DTAGQE F + + Y RS G +L + +T
Sbjct: 54 FSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITK 113
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRI-PYIEC 124
R+SF + + + + + +L +GNK+DL R+VS +AQ++A I IE
Sbjct: 114 RSSFLSVPHWIEDVRKYAGSNIVQLL-IGNKSDLSELREVSLAEAQSLAEHYDILCAIET 172
Query: 125 SAKVRINVDQAFHELVRIVL 144
SAK NV++AF + ++
Sbjct: 173 SAKDSSNVEEAFLRVATELI 192
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 119 bits (300), Expect = 7e-35
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 16/156 (10%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
F +Y PT+ D Y + L + DTAGQE++ +R + FL+ FS
Sbjct: 39 ANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 98
Query: 63 VTDRNSFEEIYKFHRQILRVKDR-DEFPMLMVGNKADL------------DHQRQVSSMD 109
V + SF+ + + + +K+ P L++G + DL ++ +
Sbjct: 99 VVNPASFQNVKE--EWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQ 156
Query: 110 AQNVARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
Q +A+++ Y+ECSA + + F E + +L
Sbjct: 157 GQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 119 bits (301), Expect = 1e-34
Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 2/139 (1%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F D TI + T+ I+ + I DTAGQE + A+ Y R G L+V+ ++
Sbjct: 38 FNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISK 97
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
+S+E + ++ D + L +GNK+DL H R V + +++ A++ ++ + E S
Sbjct: 98 SSSYENCNHWLSELRENADDNVAVGL-IGNKSDLAHLRAVPTEESKTFAQENQLLFTETS 156
Query: 126 AKVRINVDQAFHELVRIVL 144
A NVD+AF EL+ +
Sbjct: 157 ALNSENVDKAFEELINTIY 175
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 118 bits (298), Expect = 2e-34
Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 8/145 (5%)
Query: 7 FVTDYDPTIE-DSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F + T+ D K ++D L + DTAGQE F ++ + Y R +G LL++ VT
Sbjct: 53 FRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTC 112
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDH------QRQVSSMDAQNVARQLRI 119
SF I ++ I ML VGNKAD+ Q+ V + +A
Sbjct: 113 EKSFLNIREWVDMIEDAAHETVPIML-VGNKADIRDTAATEGQKCVPGHFGEKLAMTYGA 171
Query: 120 PYIECSAKVRINVDQAFHELVRIVL 144
+ E SAK N+ +A L R V
Sbjct: 172 LFCETSAKDGSNIVEAVLHLAREVK 196
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 117 bits (295), Expect = 2e-34
Identities = 40/139 (28%), Positives = 73/139 (52%), Gaps = 2/139 (1%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F + T+ TK+ I L I DTAGQE F A+ Y R G +LV+ +TD
Sbjct: 31 FNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITD 90
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
+SF+++ + +++ ++ + + VGNK DL+ +R VS +A++ A + + S
Sbjct: 91 EDSFQKVKNWVKELRKMLGNEICLCI-VGNKIDLEKERHVSIQEAESYAESVGAKHYHTS 149
Query: 126 AKVRINVDQAFHELVRIVL 144
AK +++ F +L + ++
Sbjct: 150 AKQNKGIEELFLDLCKRMI 168
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 117 bits (295), Expect = 3e-34
Identities = 48/136 (35%), Positives = 73/136 (53%), Gaps = 2/136 (1%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F Y TI D +K ++D RL + DTAGQE F ++ Y+R ++V+ +T+
Sbjct: 39 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 98
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
NSF + K+ + + D ML VGNK DL +RQVS+ + + A++L + +IE S
Sbjct: 99 TNSFHQTSKWIDDVRTERGSDVIIML-VGNKTDLSDKRQVSTEEGERKAKELNVMFIETS 157
Query: 126 AKVRINVDQAFHELVR 141
AK NV Q F +
Sbjct: 158 AKAGYNVKQLFRRVAA 173
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 118 bits (297), Expect = 3e-34
Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F Y TI D +K ++D RL + DTAG E F ++ Y+R ++V+ +T+
Sbjct: 41 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITN 100
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
NSF++ K+ + + D ML VGNK DL +RQVS + + A++L + +IE S
Sbjct: 101 VNSFQQTTKWIDDVRTERGSDVIIML-VGNKTDLADKRQVSIEEGERKAKELNVMFIETS 159
Query: 126 AKVRINVDQAFHELVR 141
AK NV Q F +
Sbjct: 160 AKAGYNVKQLFRRVAA 175
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 117 bits (294), Expect = 8e-34
Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAGQE++ +R + FL+ FS+
Sbjct: 55 FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP 114
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
SFE + K++ ++ P+++VG K DL ++ +
Sbjct: 115 ASFENVRAKWYPEVR--HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 172
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
A+++ + Y+ECSA + + F E +R VL
Sbjct: 173 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 115 bits (291), Expect = 1e-33
Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F + TI T+ +DD + +I DTAGQE + ++ Y R + ++V+ +T+
Sbjct: 31 FHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 90
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
SF + +++ R + L GNKADL ++R V +AQ+ A + ++E S
Sbjct: 91 EESFARAKNWVKELQRQASPNIVIAL-SGNKADLANKRAVDFQEAQSYADDNSLLFMETS 149
Query: 126 AKVRINVDQAFHELVR 141
AK +NV++ F + +
Sbjct: 150 AKTSMNVNEIFMAIAK 165
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 115 bits (291), Expect = 2e-33
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F + PTI TK + + I DTAGQE F ++ Y R ++V+ +T
Sbjct: 48 FDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITK 107
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
++SF + K+ +++ + + GNK DL R+V DA+ A + +E S
Sbjct: 108 QDSFYTLKKWVKELKEHGPENIVMAI-AGNKCDLSDIREVPLKDAKEYAESIGAIVVETS 166
Query: 126 AKVRINVDQAFHELVR 141
AK IN+++ F + R
Sbjct: 167 AKNAINIEELFQGISR 182
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 114 bits (289), Expect = 2e-33
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F + +PTI TK + + I DTAG E F A+ Y R ++V+ +T
Sbjct: 31 FDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITK 90
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
+F + + R++ + + GNK DL R+V DA++ A + ++E S
Sbjct: 91 EETFSTLKNWVRELRQHGPPSIVVAI-AGNKCDLTDVREVMERDAKDYADSIHAIFVETS 149
Query: 126 AKVRINVDQAFHELVR 141
AK IN+++ F E+ R
Sbjct: 150 AKNAININELFIEISR 165
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 116 bits (292), Expect = 2e-33
Identities = 37/145 (25%), Positives = 57/145 (39%), Gaps = 7/145 (4%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDI--LDTAGQEEFSAMREQYMRSGEGFLLVFSV 63
F+ DY T + I D +++ LDTAG + + QY +LVF V
Sbjct: 47 FLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDV 106
Query: 64 TDRNSFEEIYKFHRQILRVKDRDE--FPMLMVGNKADLDHQR-QVSSMDAQNVARQLRIP 120
+ SFE + + + E ++V NK DL QR QV AQ+ A +
Sbjct: 107 SSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLD 166
Query: 121 YIECSAKV-RINVDQAFHELVRIVL 144
+ + SA + D F +
Sbjct: 167 FFDVSANPPGKDADAPFLSIATTFY 191
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 113 bits (285), Expect = 1e-32
Identities = 43/136 (31%), Positives = 76/136 (55%), Gaps = 2/136 (1%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
FV + TI +++ ++D + +I DTAGQE + ++ Y R ++VF VT+
Sbjct: 37 FVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTN 96
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECS 125
+ SFE K+ +++ + + L GNK+DL R+V++ DAQ A++ + ++E S
Sbjct: 97 QASFERAKKWVQELQAQGNPNMVMAL-AGNKSDLLDARKVTAEDAQTYAQENGLFFMETS 155
Query: 126 AKVRINVDQAFHELVR 141
AK NV + F+E+ R
Sbjct: 156 AKTATNVKEIFYEIAR 171
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 114 bits (286), Expect = 2e-32
Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F Y PT+ + Y + P L I DTAGQ+++ +R + LL F VT
Sbjct: 59 FPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSP 118
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
NSF+ I +++ ++ + P+++VG K DL + V+ Q +
Sbjct: 119 NSFDNIFNRWYPEVNH--FCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEM 176
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVLLHTKQ 149
AR + + Y+ECSA++ NV F E + L +
Sbjct: 177 ARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSRGR 213
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 107 bits (268), Expect = 5e-30
Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 16/156 (10%)
Query: 3 IESYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFS 62
+ F Y PT+ ++Y +D L + DTAGQE++ +R + L+ FS
Sbjct: 46 SKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 105
Query: 63 VTDRNSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMD 109
+ +S E I K+ ++ P+++VGNK DL Q V S +
Sbjct: 106 IDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEE 163
Query: 110 AQNVARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
+++A ++ Y+ECSAK + V + F R L
Sbjct: 164 GRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 106 bits (267), Expect = 9e-30
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 4/130 (3%)
Query: 12 DPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEE 71
+ I + + + DI DTAGQE ++++ Y R ++VF +++ N+ +
Sbjct: 75 NNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDR 134
Query: 72 IYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRIN 131
+ Q+ K + +++V NK D + QV ++ Q A+ + +I+ SAK N
Sbjct: 135 AKTWVNQL---KISSNYIIILVANKIDKNK-FQVDILEVQKYAQDNNLLFIQTSAKTGTN 190
Query: 132 VDQAFHELVR 141
+ F+ L
Sbjct: 191 IKNIFYMLAE 200
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 103 bits (259), Expect = 7e-29
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 17/153 (11%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ ++YT ID L + DT+G + +R + L+ F ++
Sbjct: 32 FPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP 91
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
+ + + K+ +I ML+VG K+DL Q VS N+
Sbjct: 92 ETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM 149
Query: 114 ARQLR-IPYIECSAKVRIN-VDQAFHELVRIVL 144
A+Q+ YIECSA N V FH +
Sbjct: 150 AKQIGAATYIECSALQSENSVRDIFHVATLACV 182
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 100 bits (251), Expect = 1e-27
Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 16/152 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ D+Y+ ++D P L + DTAGQE++ +R + L+ FS+
Sbjct: 30 FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSP 89
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
SFE + K++ ++ P+++VG K DL ++ +
Sbjct: 90 ASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 147
Query: 114 ARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
A+++ + Y+ECSA + + F E +R VL
Sbjct: 148 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 100 bits (250), Expect = 3e-27
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 17/153 (11%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
F +Y PT+ ++YT ID L + DT+G + +R + L+ F ++
Sbjct: 53 FPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP 112
Query: 67 NSFEEI-YKFHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
+ + + K+ +I ML+VG K+DL Q VS N+
Sbjct: 113 ETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM 170
Query: 114 ARQLR-IPYIECSAKVRIN-VDQAFHELVRIVL 144
A+Q+ YIECSA N V FH +
Sbjct: 171 AKQIGAATYIECSALQSENSVRDIFHVATLACV 203
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 98.0 bits (244), Expect = 2e-26
Identities = 32/162 (19%), Positives = 59/162 (36%), Gaps = 17/162 (10%)
Query: 7 FVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDR 66
+ Y PT+ ++YT ++ L + DT+G + +R + LL F ++
Sbjct: 52 YPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRP 111
Query: 67 NSFEEIYK-FHRQILRVKDRDEFPMLMVGNKADL------------DHQRQVSSMDAQNV 113
+ + K + +IL +L++G K DL Q +S +
Sbjct: 112 ETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAI 169
Query: 114 ARQLR-IPYIECSAKVR-INVDQAFHELVRIVLLHTKQCKNS 153
A+QL Y+E SA ++ F + L
Sbjct: 170 AKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPSPLPQK 211
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 96.4 bits (240), Expect = 3e-26
Identities = 38/139 (27%), Positives = 72/139 (51%), Gaps = 5/139 (3%)
Query: 7 FVTDYDPTI-EDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F + +PTI T++ I++ + +I DTAGQE F+++ Y R+ + L+V+ VT
Sbjct: 28 FAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTK 87
Query: 66 RNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDH---QRQVSSMDAQNVARQLRIPYI 122
SF + + +++ +D + +VGNK D +R+V+ + + +A + + +
Sbjct: 88 PQSFIKARHWVKELHEQASKD-IIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFF 146
Query: 123 ECSAKVRINVDQAFHELVR 141
E SAK NV+ F +
Sbjct: 147 ETSAKTGENVNDVFLGIGE 165
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 93.9 bits (233), Expect = 7e-24
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 24/157 (15%)
Query: 6 YFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
F +Y PT+ D+Y+ ++D P L + DTAG E++ +R + FL+ FS+
Sbjct: 179 AFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVS 238
Query: 66 RNSFEEI-YKFHRQILRVKDRDEF----PMLMVGNKADL------------DHQRQVSSM 108
SF + K++ ++ P+++VG K DL ++
Sbjct: 239 PASFHHVRAKWYPEVR------HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYP 292
Query: 109 DAQNVARQLR-IPYIECSAKVRINVDQAFHELVRIVL 144
+A+++ + Y+ECSA + + F E +R VL
Sbjct: 293 QGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 89.0 bits (221), Expect = 3e-23
Identities = 27/149 (18%), Positives = 56/149 (37%), Gaps = 17/149 (11%)
Query: 10 DYDPTIE-DSYTKQCVIDDIPAR---LDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
T+ D I D R L++ D AG+EEF + +M +L V+ ++
Sbjct: 32 MQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSK 91
Query: 66 RNS-FEEIYKFHRQILRVKDR-DEFPMLMVGNKADLDHQRQ---VSSMDAQNVARQLRIP 120
+ + + + I K R P+++VG D+ ++Q S + + + P
Sbjct: 92 GQAEVDAMKPWLFNI---KARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFP 148
Query: 121 YI-----ECSAKVRINVDQAFHELVRIVL 144
I + + + + ++ L
Sbjct: 149 AIRDYHFVNATEESDALAKLRKTIINESL 177
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 87.7 bits (217), Expect = 5e-21
Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 5/131 (3%)
Query: 14 TIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIY 73
+ + + D GQE A + +M ++L+ D + +
Sbjct: 82 QAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLL---DSRTDSNKH 138
Query: 74 KFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVD 133
+ R I + + P+++V NK D + + + + S K V+
Sbjct: 139 YWLRHIEKY--GGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVE 196
Query: 134 QAFHELVRIVL 144
L VL
Sbjct: 197 SIAKSLKSAVL 207
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 64.0 bits (156), Expect = 2e-13
Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 13/133 (9%)
Query: 25 IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVK- 83
+ R + GQ ++A R+ +R +G + V +
Sbjct: 69 VKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAE 128
Query: 84 ---DRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQL----RIPYIECSAKVRINVDQAF 136
D+ P+++ NK DL ++ + V + + P +E A V +
Sbjct: 129 YGLTLDDVPIVIQVNKRDLPD-----ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETL 183
Query: 137 HELVRIVLLHTKQ 149
E+ R+VL
Sbjct: 184 KEVSRLVLARVAG 196
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 41.8 bits (99), Expect = 1e-05
Identities = 20/121 (16%), Positives = 45/121 (37%), Gaps = 13/121 (10%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+ D GQ++ + Y ++ +G + V DR E + ++L + + +
Sbjct: 45 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL 104
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYI--------ECSAKVRINVDQAFHELVRI 142
L+ NK DL + +M+A + +L + + A + + L
Sbjct: 105 LVFANKQDLPN-----AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159
Query: 143 V 143
+
Sbjct: 160 L 160
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 41.9 bits (99), Expect = 2e-05
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 13/119 (10%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
R + D GQE + Y + E ++V TDR + ++L +D + +
Sbjct: 61 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 120
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYI--------ECSAKVRINVDQAFHELVR 141
L+ NK D+ M +++ L++ I C A + Q ++
Sbjct: 121 LIFANKQDVKE-----CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 174
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 41.9 bits (99), Expect = 2e-05
Identities = 18/121 (14%), Positives = 45/121 (37%), Gaps = 13/121 (10%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+ D GQ++ + Y ++ +G + V DR +E +++L+ + + +
Sbjct: 74 CFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVL 133
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYI--------ECSAKVRINVDQAFHELVRI 142
L+ NK D+ + +M + +L + ++ A + L
Sbjct: 134 LVFANKQDMPN-----AMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHE 188
Query: 143 V 143
+
Sbjct: 189 L 189
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 41.1 bits (97), Expect = 3e-05
Identities = 20/121 (16%), Positives = 45/121 (37%), Gaps = 13/121 (10%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+L++ D GQ Y + V TD++ K +L+ ++ + +
Sbjct: 63 KLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAAL 122
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYI--------ECSAKVRINVDQAFHELVRI 142
L+ NK D ++ A V+++L + + SA + + L+ +
Sbjct: 123 LVFANKQDQPG-----ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDV 177
Query: 143 V 143
+
Sbjct: 178 I 178
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 41.8 bits (99), Expect = 3e-05
Identities = 26/156 (16%), Positives = 44/156 (28%), Gaps = 32/156 (20%)
Query: 14 TIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMRE--------------QYMRSGEGFLL 59
IE+ + D R + DTAG +RE M + L
Sbjct: 271 YIEE----CFIHDKTMFR--LTDTAG------LREAGEEIEHEGIRRSRMKMAEADLILY 318
Query: 60 VFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRI 119
+ + +E+ + L V NK D + + +A
Sbjct: 319 LLDLGTERLDDELTEIRELKAAHPAA---KFLTVANKLDRA---ANADALIRAIADGTGT 372
Query: 120 PYIECSAKVRINVDQAFHELVRIVLLHTKQCKNSTV 155
I SA +D + +V K + S +
Sbjct: 373 EVIGISALNGDGIDTLKQHMGDLVKNLDKLHEASVL 408
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 40.2 bits (95), Expect = 6e-05
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 13/116 (11%)
Query: 36 DTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGN 95
D G Y + + + V DR+ +L ++ + +++ N
Sbjct: 57 DLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFAN 116
Query: 96 KADLDHQRQVSSMDAQNVARQLRIPYI--------ECSAKVRINVDQAFHELVRIV 143
K D++ +M + +A L +P + + SA +D+A LV +
Sbjct: 117 KQDMEQ-----AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 167
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 40.3 bits (95), Expect = 7e-05
Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 13/121 (10%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+L+I D GQ+ + Y S +G + V DR ++ + + +L + +
Sbjct: 63 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 122
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYI--------ECSAKVRINVDQAFHELVRI 142
L+ NK DL ++ + L + I CSA ++ L+
Sbjct: 123 LIFANKQDLPG-----ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDD 177
Query: 143 V 143
+
Sbjct: 178 I 178
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 39.5 bits (93), Expect = 1e-04
Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 13/118 (11%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
R + D GQE + Y + E ++V TDR + ++L +D + +
Sbjct: 66 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 125
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYI--------ECSAKVRINVDQAFHELV 140
L+ NK D+ M +++ L++ I C A + Q ++
Sbjct: 126 LIFANKQDVKE-----CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMM 178
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 39.5 bits (93), Expect = 1e-04
Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 13/116 (11%)
Query: 36 DTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGN 95
D GQ Y + + V TDR+ +L + + +L+ N
Sbjct: 72 DLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFAN 131
Query: 96 KADLDHQRQVSSMDAQNVARQLRIPYI--------ECSAKVRINVDQAFHELVRIV 143
K DL + +A QL + I + S+K + + LV +
Sbjct: 132 KQDLPD-----AASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 39.1 bits (92), Expect = 2e-04
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 15/115 (13%)
Query: 36 DTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYK-FHRQILRVKDRDEFPMLMVG 94
D GQ F +M E+Y R + + D+ E H +L P+L++G
Sbjct: 73 DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHN-LLDKPQLQGIPVLVLG 131
Query: 95 NKADLDHQRQVSSMDAQNVARQLRIPYI--------ECSAKVRINVDQAFHELVR 141
NK DL ++D + + ++ + I S K + N+D L++
Sbjct: 132 NKRDLPG-----ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 181
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 38.3 bits (90), Expect = 3e-04
Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 13/121 (10%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+L++ D GQ + Y + + + V DR FEE + ++L + P+
Sbjct: 61 KLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPV 120
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYI--------ECSAKVRINVDQAFHELVRI 142
L+ NK DL + A +A L + I CSA V + + +
Sbjct: 121 LIFANKQDLLT-----AAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 175
Query: 143 V 143
V
Sbjct: 176 V 176
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 38.0 bits (89), Expect = 4e-04
Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 15/123 (12%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKD--RDEF 88
+ D +GQ + + E Y + G+ + V +DR + +L D
Sbjct: 68 SFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRI 127
Query: 89 PMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYI--------ECSAKVRINVDQAFHELV 140
P+L NK DL ++ + V++ L + I A + + L
Sbjct: 128 PILFFANKMDLRD-----AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQ 182
Query: 141 RIV 143
+
Sbjct: 183 DQI 185
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 36.7 bits (86), Expect = 0.002
Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 39/157 (24%)
Query: 14 TIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMRE--------------QYMRSGEGFLL 59
+E Q V+ IP + +LDTAG +RE Q + + LL
Sbjct: 262 VVES----QLVVGGIPVQ--VLDTAG------IRETSDQVEKIGVERSRQAANTADLVLL 309
Query: 60 VFSVTDRNSFEEIYKFHRQIL-RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLR 118
+ + ++I +VK R P+++V NK DL ++ ++S++
Sbjct: 310 TIDAATGWTTGD-----QEIYEQVKHR---PLILVMNKIDLVEKQLITSLEYPENIT--- 358
Query: 119 IPYIECSAKVRINVDQAFHELVRIVLLHTKQCKNSTV 155
+ +A + +D ++ IV Q + +
Sbjct: 359 -QIVHTAAAQKQGIDSLETAILEIVQTGKVQAADMDL 394
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.002
Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 40/162 (24%)
Query: 5 SYFVTDYDPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFL-LVFSV 63
S+F+ +++ + K +P + A +E + E + FL V S+
Sbjct: 26 SFFIAS---QLQEQFNK-----ILPEPTE--GFAADDEPTTPAELVGK----FLGYVSSL 71
Query: 64 TDRN---SFEEIYK-----FHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVAR 115
+ + F+++ F L GN D+ H + + +N
Sbjct: 72 VEPSKVGQFDQVLNLCLTEFENCYLE------------GN--DI-HAL-AAKLLQENDTT 115
Query: 116 QLRIPY-IECSAKVRINVDQAFHELVRIVLLHTKQCKNSTVY 156
++ I+ RI + F + L N+ +
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 36.3 bits (84), Expect = 0.002
Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 17/113 (15%)
Query: 13 PTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFL--LVF---SVTDRN 67
+ E D + + ++D G + Y+++ F+ L+F S D
Sbjct: 42 VSQEPLSA----ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPK 97
Query: 68 SFEEIYKFHRQIL---RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQL 117
+F IL + +L+ NK++L ++ + L
Sbjct: 98 KLTTTAEFLVDILSITESSCENGIDILIACNKSEL-----FTARPPSKIKDAL 145
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 34.7 bits (80), Expect = 0.006
Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 17/113 (15%)
Query: 13 PTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMREQYMRSGEGFL--LVF---SVTDRN 67
+ E D + + ++D G + Y+++ F+ L+F S D
Sbjct: 78 VSQEPLSA----ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPK 133
Query: 68 SFEEIYKFHRQIL---RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQL 117
+F IL + +L+ NK++L ++ + L
Sbjct: 134 KLTTTAEFLVDILSITESSCENGIDILIACNKSEL-----FTARPPSKIKDAL 181
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 33.7 bits (78), Expect = 0.011
Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 41/146 (28%)
Query: 8 VTDY-----DPTIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMRE-------------- 48
VTD D + + ID +P I+DTAG +RE
Sbjct: 32 VTDIAGTTRD-VLRE----HIHIDGMPLH--IIDTAG------LREASDEVERIGIERAW 78
Query: 49 QYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSM 108
Q + + L + T ++ + + I R+ + P+ +V NKAD+ +
Sbjct: 79 QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKL--PITVVRNKADI-------TG 129
Query: 109 DAQNVARQLRIPYIECSAKVRINVDQ 134
+ ++ I SA+ VD
Sbjct: 130 ETLGMSEVNGHALIRLSARTGEGVDV 155
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 33.7 bits (78), Expect = 0.020
Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 39/137 (28%)
Query: 14 TIEDSYTKQCVIDDIPARLDILDTAGQEEFSAMRE---------------QYMRSGEGFL 58
I + + VI I R I+DTAG +R Q + + L
Sbjct: 281 VISE----EIVIRGILFR--IVDTAG------VRSETNDLVERLGIERTLQEIEKADIVL 328
Query: 59 LVFSVTDRNSFEEIYKFHRQIL-RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQL 117
V + E+ R+IL R+K++ L+V NK D+ + + + +
Sbjct: 329 FVLDASSPLDEED-----RKILERIKNK---RYLVVINKVDVVEKINEEEIKNKLGTDR- 379
Query: 118 RIPYIECSAKVRINVDQ 134
++ SA +++
Sbjct: 380 --HMVKISALKGEGLEK 394
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 32.5 bits (74), Expect = 0.038
Identities = 20/121 (16%), Positives = 45/121 (37%), Gaps = 13/121 (10%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPM 90
+ D GQ++ + Y ++ +G + V DR E + ++L + + +
Sbjct: 210 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL 269
Query: 91 LMVGNKADLDHQRQVSSMDAQNVARQLRIPYI--------ECSAKVRINVDQAFHELVRI 142
L+ NK DL + +M+A + +L + + A + + L
Sbjct: 270 LVFANKQDLPN-----AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 324
Query: 143 V 143
+
Sbjct: 325 L 325
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.041
Identities = 24/154 (15%), Positives = 49/154 (31%), Gaps = 32/154 (20%)
Query: 25 IDDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD-RNSFEEIYKFHR------ 77
I D A D ++ + + E L V + R F+ + F
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIES-------SLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 78 ---QILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQ 134
++ M++V + H+ S ++ Q + IP I KV++ +
Sbjct: 390 ILLSLIWFDVIKSDVMVVV----NKLHKY--SLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 135 AFH-ELVRIVLLHTKQCKNSTV--------YRYL 159
A H +V + + + Y ++
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 32.6 bits (74), Expect = 0.050
Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 13/131 (9%)
Query: 36 DTAGQEEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGN 95
D GQ++ + Y +G + V DR+ +E + +I+ ++ + +L+ N
Sbjct: 372 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 431
Query: 96 KADLDHQRQVSSMDAQNVARQLRIPYI--------ECSAKVRINVDQAFHELVRIVLLHT 147
K DL +M + +L + I A + + L
Sbjct: 432 KQDLPD-----AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKL 486
Query: 148 KQCKNSTVYRY 158
+ +
Sbjct: 487 AAALEHHHHHH 497
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 31.1 bits (71), Expect = 0.088
Identities = 19/134 (14%), Positives = 40/134 (29%), Gaps = 31/134 (23%)
Query: 31 RLDILDTAGQEEFSAMREQYMRSGEGFLLVFSV--TDRNSFEEIYK-FHRQILRVKDRDE 87
D G + + + Y+ + G +VF V D E + ++ +
Sbjct: 70 TFTTFDLGGHIQARRVWKNYLPAING--IVFLVDCADHERLLESKEELDS-LMTDETIAN 126
Query: 88 FPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIE--------------------CSAK 127
P+L++GNK D ++ + + + CS
Sbjct: 127 VPILILGNKIDRPE-----AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVL 181
Query: 128 VRINVDQAFHELVR 141
R + F + +
Sbjct: 182 KRQGYGEGFRWMAQ 195
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 30.6 bits (69), Expect = 0.17
Identities = 28/152 (18%), Positives = 55/152 (36%), Gaps = 20/152 (13%)
Query: 2 KIESYFVTDYDPTI--EDSYTKQCVIDDIPARLDILDTAGQE-------EFSAMREQYMR 52
+I SY T + + + I D P +LD E A+R +
Sbjct: 193 EIASYPFTTRGINVGQFEDGYFRYQIIDTPG---LLDRPISERNEIEKQAILALRY--LG 247
Query: 53 SGEGFLLVFSVTDRNSFEEIYKFHRQIL-RVKDRDEFPMLMVGNKADLDHQRQVSSMDAQ 111
+ ++ S EE ++ KD P L+V NK D+ + + ++
Sbjct: 248 NLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDL---PFLVVINKIDVADEENIKRLEKF 304
Query: 112 NVARQLRIPYIECSAKVRINVDQAFHELVRIV 143
++ + I+ SA +D E+++ +
Sbjct: 305 --VKEKGLNPIKISALKGTGIDLVKEEIIKTL 334
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 30.2 bits (69), Expect = 0.19
Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 26/124 (20%)
Query: 36 DTAGQEEFSAMREQYMRSGEGFLLVFSV--TDRNSFEEIYK-FHRQILRVKDRDEFPMLM 92
D G + + + Y G +VF V D F+E + + + + P ++
Sbjct: 73 DLGGHIQARRLWKDYFPEVNG--IVFLVDAADPERFDEARVELDA-LFNIAELKDVPFVI 129
Query: 93 VGNKADLDHQRQVSSMDAQNVARQLRIPYIE---------------CSAKVRINVDQAFH 137
+GNK D + ++ + L + CS +R +AF
Sbjct: 130 LGNKIDAPN-----AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ 184
Query: 138 ELVR 141
L +
Sbjct: 185 WLSQ 188
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 29.6 bits (67), Expect = 0.37
Identities = 14/117 (11%), Positives = 37/117 (31%), Gaps = 16/117 (13%)
Query: 34 ILDTAGQEEFSAMREQYMRSGEG-------FLLVFSVTDRNSFEEIYKFHRQILRVKDRD 86
++DT G ++ + + +LV +++ + + +
Sbjct: 87 LVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVV----NLFKEMEI- 141
Query: 87 EFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143
P ++V NK D+ ++ + + SA + D + I+
Sbjct: 142 --PFVVVVNKIDVLGEKA--EELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEIL 194
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 29.3 bits (66), Expect = 0.45
Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 27/160 (16%)
Query: 2 KIESYFVTDYDPTI--EDSYTKQCVIDDIPARLDILDTAGQEE-------FSAMREQYMR 52
++SY T + + D + I D P +LD A + +A+ ++
Sbjct: 55 DVQSYSFTTKNLYVGHFDHKLNKYQIIDTPG---LLDRAFENRNTIEMTTITALA--HIN 109
Query: 53 SGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEF---PMLMVGNKADLDHQRQVSSMD 109
F++ S + +E I + F +++ NK D + +S +
Sbjct: 110 GVILFIIDISEQCGLTIKEQINLFYSI-----KSVFSNKSIVIGFNKIDKCNMDSLSIDN 164
Query: 110 AQNVARQLR-----IPYIECSAKVRINVDQAFHELVRIVL 144
+ + L I + S + V+QA ++
Sbjct: 165 KLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLK 204
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 29.5 bits (67), Expect = 0.48
Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 77 RQILRVKDRDEFPMLMVGNKAD-LDHQRQVSSMDAQNVARQLRIPYIEC---SAKVRINV 132
+ILR P+L+ NK D ++ + ++++L P + SA R N+
Sbjct: 282 FEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNL 341
Query: 133 DQAFHELVRIV 143
+ ++ ++
Sbjct: 342 ELLRDKIYQLA 352
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 28.4 bits (64), Expect = 0.96
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 70 EEIYKFHRQILRVKDRDEFPMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKV 128
+++ F +I RV PM++ NKAD Q+ + + I SA
Sbjct: 201 DDLLAFASEIRRVN----KPMVIAANKADAASDEQIKRL--VREEEKRGYIVIPTSAAA 253
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock
protein, protein binding; 2.75A {Mus musculus}
Length = 320
Score = 27.3 bits (60), Expect = 2.3
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 26 DDIPARLDILDTAGQEEFSAMREQYMRSGEGFLLVFSVTD 65
+ P +D+ +E E +R+ + F + S
Sbjct: 7 EFEPCAMDMSTYTLEELEHITSEYTLRNQDTFSVAVSFLT 46
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm,
protein binding; 2.50A {Mus musculus}
Length = 317
Score = 26.5 bits (58), Expect = 3.7
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 26 DDIPARLDILDTAGQEEFSA-MREQYMRSGEGFLLVFSVTD 65
+ P RL+ + E+ +A E ++ + F VFS
Sbjct: 6 PEFPGRLEDVTVYSLEDLTALASEHTSKNTDTFAAVFSFLS 46
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 26.8 bits (59), Expect = 3.8
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 41 EEFSAMREQYMRSGEGFLLVFSVTDRNSFEEIYKFHRQILRVKDRDEFPMLMVGNKADL 99
++F +M + S + + + D N F + R + P+L+VGNKADL
Sbjct: 59 DDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRF--AADNPILLVGNKADL 110
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 26.1 bits (58), Expect = 4.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 35 LDTAGQEEFSAMR 47
LDT G E F+ MR
Sbjct: 60 LDTPGHEAFTTMR 72
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 26.4 bits (59), Expect = 5.3
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 35 LDTAGQEEFSAMRE 48
LDT G FSAMR
Sbjct: 57 LDTPGHAAFSAMRA 70
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex,
transferase/RNA complex; 3.10A {Escherichia coli} PDB:
2det_A 2deu_A*
Length = 380
Score = 25.6 bits (57), Expect = 7.5
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 109 DAQNVARQLRIPY 121
DAQ V +L I
Sbjct: 69 DAQAVCDKLGIEL 81
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat
methyltransferase; alpha-beta, beta barrel, structural
genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus
pneumoniae}
Length = 376
Score = 25.6 bits (57), Expect = 8.2
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 109 DAQNVARQLRIPY 121
D VA Q+ IPY
Sbjct: 61 DVVAVADQIGIPY 73
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome,
initiation of protein synthesis, cryo-eletron
microscopy, translation/RNA complex; 13.80A
{Escherichia coli}
Length = 501
Score = 25.6 bits (57), Expect = 8.3
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 35 LDTAGQEEFSAMR 47
LDT G F++MR
Sbjct: 56 LDTPGHAAFTSMR 68
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 25.6 bits (57), Expect = 9.4
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 89 PMLMVGNKADLDHQRQVSSMDAQNVARQLRIPYIECSAKVRINVDQAFHELVRIV 143
P ++V NK D+ + + + P SA R + + E+ +
Sbjct: 276 PQIIVANKMDMPEAAENLEAFKEKLTDD--YPVFPISAVTREGLRELLFEVANQL 328
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase;
HET: GDP; 2.00A {Methanothermobacterthermautotrophicus}
SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A*
1g7t_A*
Length = 594
Score = 25.7 bits (57), Expect = 9.6
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 34 ILDTAGQEEFSAMR 47
+DT G E F+ +R
Sbjct: 74 FIDTPGHEAFTTLR 87
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.137 0.393
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,429,419
Number of extensions: 135334
Number of successful extensions: 609
Number of sequences better than 10.0: 1
Number of HSP's gapped: 479
Number of HSP's successfully gapped: 136
Length of query: 159
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 73
Effective length of database: 4,300,587
Effective search space: 313942851
Effective search space used: 313942851
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.1 bits)