BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1129
         (106 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1V1F|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed
          With Calcium(Ii) And Manganese(Ii) Ions
 pdb|1V1G|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed
          With Calcium(Ii) Ion
          Length = 222

 Score = 26.9 bits (58), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 72 PKLMANRKPFVLREVLIVYNLFQVLFSA 99
          P+L+A+  PF + EV  +Y LF+ L S+
Sbjct: 22 PELLASVTPFTVEEVEALYELFKKLSSS 49


>pdb|2EHB|A Chain A, The Structure Of The C-Terminal Domain Of The Protein
          Kinase Atsos2 Bound To The Calcium Sensor Atsos3
          Length = 207

 Score = 26.6 bits (57), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 72 PKLMANRKPFVLREVLIVYNLFQVLFSA 99
          P+L+A+  PF + EV  +Y LF+ L S+
Sbjct: 22 PELLASVTPFTVEEVEALYELFKKLSSS 49


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.143    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,929,023
Number of Sequences: 62578
Number of extensions: 98267
Number of successful extensions: 175
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 7
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)