Query psy1129
Match_columns 106
No_of_seqs 129 out of 742
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 23:02:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1129.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1129hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00251 fatty acid elongase; 99.6 2.1E-16 4.6E-21 124.1 5.0 66 38-105 11-81 (272)
2 PF01151 ELO: GNS1/SUR4 family 99.5 1.1E-14 2.4E-19 112.0 6.7 57 47-105 1-57 (250)
3 KOG3071|consensus 99.4 6.4E-13 1.4E-17 104.9 7.0 64 39-104 17-80 (274)
4 KOG3072|consensus 99.3 4.1E-12 9E-17 100.6 4.0 63 38-102 25-87 (282)
5 PF06210 DUF1003: Protein of u 69.0 25 0.00054 24.3 6.0 49 51-102 2-50 (108)
6 COG5548 Small integral membran 67.5 4.3 9.3E-05 28.1 1.9 24 58-82 59-82 (105)
7 PF15048 OSTbeta: Organic solu 45.4 44 0.00095 24.0 4.0 25 56-81 41-65 (125)
8 COG4420 Predicted membrane pro 44.0 79 0.0017 24.2 5.5 49 50-101 55-103 (191)
9 PF11694 DUF3290: Protein of u 26.2 2E+02 0.0042 20.9 5.0 47 52-99 16-62 (149)
10 PRK09173 F0F1 ATP synthase sub 23.5 68 0.0015 22.7 2.1 30 51-80 3-36 (159)
11 PHA02980 hypothetical protein; 20.9 1.3E+02 0.0028 22.3 3.2 23 52-75 45-67 (160)
12 PF06744 DUF1215: Protein of u 20.6 51 0.0011 22.6 0.9 24 10-33 63-88 (125)
No 1
>PTZ00251 fatty acid elongase; Provisional
Probab=99.63 E-value=2.1e-16 Score=124.06 Aligned_cols=66 Identities=21% Similarity=0.426 Sum_probs=60.2
Q ss_pred cCCCCccccccccCCchHHHHHHHHHHHHHHHhhHHhhcc----CCCcc-cchHHHHHHHHHHHHHHHHHHhh
Q psy1129 38 KLPDPRTNNWFLMSSPVPTILICLTYVYIVKVLGPKLMAN----RKPFV-LREVLIVYNLFQVLFSAWLFYET 105 (106)
Q Consensus 38 ~~~D~r~~~Wpl~~sp~~~i~i~~~YL~~V~~~Gp~~Mk~----RkPf~-Lr~~l~~yNl~l~~~S~~m~~~~ 105 (106)
++..+|+++| +++||++++.++++|+++| +.||++||+ |||++ ||+++.+||++|+++|++++++.
T Consensus 11 ~f~~~~~~~w-l~~~~~~~~~i~~~Yl~~V-~~Gp~~M~~~~~~Rkp~~~Lr~~l~~yNl~l~v~s~~~~~~~ 81 (272)
T PTZ00251 11 HYDGHAVQKW-LASNVDICVYIAAAYLTFV-FKGPQLVDAIFHGNPPVPLIKKCWALWNIGLSVFSMYGVYRV 81 (272)
T ss_pred cCCcHHHHHH-HHhCCHHHHHHHHHHHHHH-HHHHHHHhhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445788999 6899999999999999999 599999974 99999 99999999999999999999864
No 2
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=99.54 E-value=1.1e-14 Score=112.02 Aligned_cols=57 Identities=54% Similarity=1.046 Sum_probs=54.6
Q ss_pred ccccCCchHHHHHHHHHHHHHHHhhHHhhccCCCcccchHHHHHHHHHHHHHHHHHHhh
Q psy1129 47 WFLMSSPVPTILICLTYVYIVKVLGPKLMANRKPFVLREVLIVYNLFQVLFSAWLFYET 105 (106)
Q Consensus 47 Wpl~~sp~~~i~i~~~YL~~V~~~Gp~~Mk~RkPf~Lr~~l~~yNl~l~~~S~~m~~~~ 105 (106)
|+ ++||++++.++++|+++| +.||++||+|||++||+++.+||++|+++|++++++.
T Consensus 1 Wl-~~~~~~~~~~~~~Yl~~V-~~g~~~m~~Rkp~~Lk~~~~~~N~~l~~~S~~~~~~~ 57 (250)
T PF01151_consen 1 WL-MSNPWFPILIVVLYLLFV-FLGPRFMKNRKPFNLKTLIIVYNLFLVVFSAYMFYGI 57 (250)
T ss_pred Cc-ccCCHHHHHHHHHHHHHH-HHHHHHHhhCCCcccChHHHHHHHHHHHHHHHHHHHH
Confidence 74 799999999999999999 8999999999999999999999999999999999875
No 3
>KOG3071|consensus
Probab=99.40 E-value=6.4e-13 Score=104.91 Aligned_cols=64 Identities=55% Similarity=0.743 Sum_probs=57.1
Q ss_pred CCCCccccccccCCchHHHHHHHHHHHHHHHhhHHhhccCCCcccchHHHHHHHHHHHHHHHHHHh
Q psy1129 39 LPDPRTNNWFLMSSPVPTILICLTYVYIVKVLGPKLMANRKPFVLREVLIVYNLFQVLFSAWLFYE 104 (106)
Q Consensus 39 ~~D~r~~~Wpl~~sp~~~i~i~~~YL~~V~~~Gp~~Mk~RkPf~Lr~~l~~yNl~l~~~S~~m~~~ 104 (106)
..|+++. ||++++|+++..++++|+ +|...||++|+||||++||+++.+||++|++.|+.++.+
T Consensus 17 ~~~~~v~-~~~l~s~~~~~~il~~yl-~v~~~G~~~m~nrkp~~l~~~~~vyN~~~vl~s~~i~~~ 80 (274)
T KOG3071|consen 17 SPDDRVR-SPLLSSPWPLLSILLAYL-FVLKLGPKLMRNRKPLKLRGLSQVYNLGQVLLSAAIFLE 80 (274)
T ss_pred CCCcccc-chhccCcHHHHHHHHHHH-HHHHhcHhhhccCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555 888999999999999999 666899999999999999999999999999999997765
No 4
>KOG3072|consensus
Probab=99.26 E-value=4.1e-12 Score=100.56 Aligned_cols=63 Identities=25% Similarity=0.381 Sum_probs=54.6
Q ss_pred cCCCCccccccccCCchHHHHHHHHHHHHHHHhhHHhhccCCCcccchHHHHHHHHHHHHHHHHH
Q psy1129 38 KLPDPRTNNWFLMSSPVPTILICLTYVYIVKVLGPKLMANRKPFVLREVLIVYNLFQVLFSAWLF 102 (106)
Q Consensus 38 ~~~D~r~~~Wpl~~sp~~~i~i~~~YL~~V~~~Gp~~Mk~RkPf~Lr~~l~~yNl~l~~~S~~m~ 102 (106)
++.+.++..|. .++|...+.++++|+++| +.||++|+|||||+|+++|.+||.+++++|+.=+
T Consensus 25 ~F~~~~~~~~~-~~~~~~si~is~~Y~v~i-f~~q~fM~~RkpF~L~~pL~lWn~~La~FSi~g~ 87 (282)
T KOG3072|consen 25 GFDSESVVKFF-QEHWPLSIHISIAYLVLI-FGGQNFMKNRKPFQLTKPLNLWNFCLAAFSILGA 87 (282)
T ss_pred CCchHHHHHHH-HhccchhHHHHHHHHHHH-HHHHHHHhcCCCCCCcChHHHHHHHHHHHHHHHH
Confidence 33345556675 688888999999999999 8999999999999999999999999999998643
No 5
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=69.04 E-value=25 Score=24.26 Aligned_cols=49 Identities=22% Similarity=0.141 Sum_probs=32.2
Q ss_pred CCchHHHHHHHHHHHHHHHhhHHhhccCCCcccchHHHHHHHHHHHHHHHHH
Q psy1129 51 SSPVPTILICLTYVYIVKVLGPKLMANRKPFVLREVLIVYNLFQVLFSAWLF 102 (106)
Q Consensus 51 ~sp~~~i~i~~~YL~~V~~~Gp~~Mk~RkPf~Lr~~l~~yNl~l~~~S~~m~ 102 (106)
+||+..+..++...+.+ +...+.-.+++|+.-+ ..+-|+++++.+++.+
T Consensus 2 GS~~Fi~~~~~~~~~Wi--~~N~~~~~~~~fDpyP-FilLnl~lS~~Aa~~a 50 (108)
T PF06210_consen 2 GSWTFIIIFTVFLAVWI--LLNILAPPRPAFDPYP-FILLNLVLSLEAAYQA 50 (108)
T ss_pred CcHHHHHHHHHHHHHHH--HHHhhccccCCCCCcc-HHHHHHHHHHHHHHHH
Confidence 67777777766666655 3333443446677543 7788999998887754
No 6
>COG5548 Small integral membrane protein [Function unknown]
Probab=67.54 E-value=4.3 Score=28.11 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhhHHhhccCCCcc
Q psy1129 58 LICLTYVYIVKVLGPKLMANRKPFV 82 (106)
Q Consensus 58 ~i~~~YL~~V~~~Gp~~Mk~RkPf~ 82 (106)
+..+.=++.+ +.++|.||+|||.-
T Consensus 59 A~~~s~~Ll~-~~~~R~~~sRKpvP 82 (105)
T COG5548 59 ATVVSAALLV-FFALRLVRSRKPVP 82 (105)
T ss_pred HHHHHHHHHH-hcchhccccCCCcc
Confidence 3333344555 68999999999964
No 7
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=45.40 E-value=44 Score=23.99 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhhHHhhccCCCc
Q psy1129 56 TILICLTYVYIVKVLGPKLMANRKPF 81 (106)
Q Consensus 56 ~i~i~~~YL~~V~~~Gp~~Mk~RkPf 81 (106)
+++++++-+-++ .+|.-+|+||+.-
T Consensus 41 ~Ls~vvlvi~~~-LLgrsi~ANRnrK 65 (125)
T PF15048_consen 41 ALSFVVLVISFF-LLGRSIQANRNRK 65 (125)
T ss_pred HHHHHHHHHHHH-HHHHHhHhccccc
Confidence 344444444444 6899999998663
No 8
>COG4420 Predicted membrane protein [Function unknown]
Probab=43.97 E-value=79 Score=24.21 Aligned_cols=49 Identities=12% Similarity=0.022 Sum_probs=35.9
Q ss_pred cCCchHHHHHHHHHHHHHHHhhHHhhccCCCcccchHHHHHHHHHHHHHHHH
Q psy1129 50 MSSPVPTILICLTYVYIVKVLGPKLMANRKPFVLREVLIVYNLFQVLFSAWL 101 (106)
Q Consensus 50 ~~sp~~~i~i~~~YL~~V~~~Gp~~Mk~RkPf~Lr~~l~~yNl~l~~~S~~m 101 (106)
.+||...+..+++.++.| ++--.-+-..||+- ++.++=|+++++.+++-
T Consensus 55 ~Gsw~fil~~~~~ll~Wi--~lNl~~~~~~~wDp-yPFi~LnLllS~~Aaiq 103 (191)
T COG4420 55 GGSWAFILTFTLLLLLWI--VLNLFLVPGLAWDP-YPFILLNLLLSTLAAIQ 103 (191)
T ss_pred cCChHHHHHHHHHHHHHH--HHHHhhhcCCcCCC-ccHHHHHHHHHHHHHHH
Confidence 589999988888888877 34445555577775 45667799988888763
No 9
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=26.25 E-value=2e+02 Score=20.87 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=31.3
Q ss_pred CchHHHHHHHHHHHHHHHhhHHhhccCCCcccchHHHHHHHHHHHHHH
Q psy1129 52 SPVPTILICLTYVYIVKVLGPKLMANRKPFVLREVLIVYNLFQVLFSA 99 (106)
Q Consensus 52 sp~~~i~i~~~YL~~V~~~Gp~~Mk~RkPf~Lr~~l~~yNl~l~~~S~ 99 (106)
++...+.++++=++++ +.+-+++|+|.-=+-|-+.++==+++.++.+
T Consensus 16 ~~~~~~~i~~ll~~l~-~~~~~Y~r~r~~tKyRDL~II~~L~ll~l~g 62 (149)
T PF11694_consen 16 DYLRYILIIILLLVLI-FFFIKYLRNRLDTKYRDLSIIALLLLLLLIG 62 (149)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhcCcchhhhHHHHHHHHHHHHHH
Confidence 3444555555555555 6788999999998888887765555544443
No 10
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=23.48 E-value=68 Score=22.65 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=17.8
Q ss_pred CCchHHHHHHHHHHHHHHHhhH----HhhccCCC
Q psy1129 51 SSPVPTILICLTYVYIVKVLGP----KLMANRKP 80 (106)
Q Consensus 51 ~sp~~~i~i~~~YL~~V~~~Gp----~~Mk~RkP 80 (106)
+..|..+.++++++++.++.+| .+|++|+-
T Consensus 3 ~~~w~~i~f~i~l~~l~~~~~~~pi~~~l~~R~~ 36 (159)
T PRK09173 3 ATFWAFVGLVLFLALVVYLKVPGMIARSLDARAD 36 (159)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455666777777776644344 34666653
No 11
>PHA02980 hypothetical protein; Provisional
Probab=20.86 E-value=1.3e+02 Score=22.25 Aligned_cols=23 Identities=13% Similarity=0.025 Sum_probs=14.5
Q ss_pred CchHHHHHHHHHHHHHHHhhHHhh
Q psy1129 52 SPVPTILICLTYVYIVKVLGPKLM 75 (106)
Q Consensus 52 sp~~~i~i~~~YL~~V~~~Gp~~M 75 (106)
++..+.+-.++|..+- ..+-...
T Consensus 45 ~wvF~pVWtiLY~lMg-iA~~lvw 67 (160)
T PHA02980 45 YYVRFSLYIISYIFMG-HGMYLIH 67 (160)
T ss_pred cchHHHHHHHHHHHHH-HHHHHHH
Confidence 5666777777777776 3444444
No 12
>PF06744 DUF1215: Protein of unknown function (DUF1215); InterPro: IPR010623 This domain represents a conserved region situated towards the C-terminal end of several hypothetical bacterial proteins of unknown function. A few members resemble the ImcF protein, which has been proposed [] to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells line and increased conjugation frequency.
Probab=20.61 E-value=51 Score=22.56 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=19.3
Q ss_pred cccccccccc--ccccchhHHHHHHH
Q psy1129 10 VSIRADDFTR--VSDENLPEYLVMIV 33 (106)
Q Consensus 10 ~~~~~~~~~~--~~~~~~~~~~~~~~ 33 (106)
.|+.+++|++ -.++.+++|..+++
T Consensus 63 ~dv~l~Df~~fF~p~G~ld~F~~~~L 88 (125)
T PF06744_consen 63 RDVSLADFARFFGPGGVLDQFFNQYL 88 (125)
T ss_pred ccCCHHHHHHHhcCCCcHHHHHHHHH
Confidence 5788999999 56688998877666
Done!