Query psy1129
Match_columns 106
No_of_seqs 129 out of 742
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 23:02:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1129.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1129hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hi2_B Motility quorum-sensing 13.1 49 0.0017 21.8 0.3 15 74-88 3-18 (101)
2 2knu_A E1_peptide, genome poly 12.5 63 0.0021 16.7 0.6 21 45-65 5-25 (29)
3 3arc_L Photosystem II reaction 10.5 2.4E+02 0.0082 15.3 3.7 22 77-98 6-27 (37)
4 2kav_A Sodium channel protein 9.2 88 0.003 21.2 0.6 32 11-47 20-59 (129)
5 2wwb_C SEC61BETA, protein tran 7.6 3.3E+02 0.011 17.6 2.8 19 52-71 69-87 (96)
6 2f8e_A VPG protein; RNA-depend 7.0 1.2E+02 0.0042 15.2 0.4 11 75-85 7-17 (26)
7 4b0f_A C4B-binding protein alp 6.9 2.3E+02 0.0077 17.3 1.6 28 69-96 18-46 (65)
8 3he4_A Synzip6; heterodimeric 5.2 4.3E+02 0.015 15.1 2.1 21 75-95 8-28 (56)
9 2ww9_C Protein transport prote 5.2 4.8E+02 0.016 16.5 2.5 16 52-67 60-75 (87)
10 1rh5_C Secbeta; protein transl 4.8 5.8E+02 0.02 14.5 3.1 16 52-67 29-44 (53)
No 1
>3hi2_B Motility quorum-sensing regulator MQSR; toxin-antitoxin system, Zn-binding protein, MQSA, YGIU B3022, B3021, stress response; 2.00A {Escherichia coli k-12}
Probab=13.05 E-value=49 Score=21.81 Aligned_cols=15 Identities=33% Similarity=0.359 Sum_probs=10.1
Q ss_pred hhccCCC-cccchHHH
Q psy1129 74 LMANRKP-FVLREVLI 88 (106)
Q Consensus 74 ~Mk~RkP-f~Lr~~l~ 88 (106)
-|++|+| |+|..+-.
T Consensus 3 ~MEKrtPhy~L~~ik~ 18 (101)
T 3hi2_B 3 HMEKRTPHTRLSQVKK 18 (101)
T ss_dssp -CEESSCSSCHHHHHH
T ss_pred cCccCCCCCcHHHHHH
Confidence 3888888 78765543
No 2
>2knu_A E1_peptide, genome polyprotein; HCV, pretransmembrane, glycoprotein, envelope protein, transmembrane, membrane protein; NMR {Hepatitis c virus}
Probab=12.47 E-value=63 Score=16.68 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=15.9
Q ss_pred ccccccCCchHHHHHHHHHHH
Q psy1129 45 NNWFLMSSPVPTILICLTYVY 65 (106)
Q Consensus 45 ~~Wpl~~sp~~~i~i~~~YL~ 65 (106)
..|-++.||.+....+++|+.
T Consensus 5 mawdmMmnwspt~~~~~a~~l 25 (29)
T 2knu_A 5 MAWDMMMNWSPTAALVVAQLL 25 (29)
T ss_dssp TGGGTTCCSCCTTHHHHHHHC
T ss_pred hHHHHHhccCchHHHHHHHHH
Confidence 357778888888888888764
No 3
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=10.54 E-value=2.4e+02 Score=15.26 Aligned_cols=22 Identities=27% Similarity=0.455 Sum_probs=17.5
Q ss_pred cCCCcccchHHHHHHHHHHHHH
Q psy1129 77 NRKPFVLREVLIVYNLFQVLFS 98 (106)
Q Consensus 77 ~RkPf~Lr~~l~~yNl~l~~~S 98 (106)
|++|.+|.+--..|-+.++..-
T Consensus 6 n~q~VELNRTSLy~GLLlifvl 27 (37)
T 3arc_L 6 NRQPVELNRTSLYLGLLLILVL 27 (37)
T ss_dssp TCCCBCCCHHHHHHHHHHHHHH
T ss_pred CCCcceechhhHHHHHHHHHHH
Confidence 5788999999999988876533
No 4
>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium channel, alternative splicing, disease epilepsy, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kbi_A
Probab=9.15 E-value=88 Score=21.20 Aligned_cols=32 Identities=13% Similarity=0.396 Sum_probs=19.5
Q ss_pred ccccccccc--------ccccchhHHHHHHHHhhccCCCCccccc
Q psy1129 11 SIRADDFTR--------VSDENLPEYLVMIVIANEKLPDPRTNNW 47 (106)
Q Consensus 11 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~e~~~D~r~~~W 47 (106)
.+++|+|.. .+.+++++|.+.|. ..||..+++
T Consensus 20 AVIlenF~~~~~~~~~~l~~~dl~~F~~~W~-----~fDP~aTg~ 59 (129)
T 2kav_A 20 HMASENFSVATEESAEPLSEDDFEMFYEVWE-----KFDPDATQF 59 (129)
T ss_dssp ----CCSCCTTSSCSCSSCHHHHHHHHHHHH-----HHCTTCCCE
T ss_pred eeeeccHHHHHHhhccCCCHHHHHHHHHHHH-----hcCCCCceE
Confidence 456788833 55677888887777 557766665
No 5
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=7.62 E-value=3.3e+02 Score=17.64 Aligned_cols=19 Identities=26% Similarity=0.614 Sum_probs=15.9
Q ss_pred CchHHHHHHHHHHHHHHHhh
Q psy1129 52 SPVPTILICLTYVYIVKVLG 71 (106)
Q Consensus 52 sp~~~i~i~~~YL~~V~~~G 71 (106)
+|..++.+.++|..+| ++.
T Consensus 69 ~P~~VLv~sl~Fi~~V-i~L 87 (96)
T 2wwb_C 69 GPVPVLVMSLLFIASV-FML 87 (96)
T ss_dssp SSCSHHHHHHHHHHHH-HHH
T ss_pred CCEEehhhHHHHHHHH-HHH
Confidence 6888999999999998 443
No 6
>2f8e_A VPG protein; RNA-dependent RNA polymerase , protein primer, transferase; HET: U5P; 2.90A {Foot-and-mouth disease virus - type C} PDB: 2d7s_B
Probab=6.95 E-value=1.2e+02 Score=15.15 Aligned_cols=11 Identities=9% Similarity=0.597 Sum_probs=8.0
Q ss_pred hccCCCcccch
Q psy1129 75 MANRKPFVLRE 85 (106)
Q Consensus 75 Mk~RkPf~Lr~ 85 (106)
|+..+|.++|.
T Consensus 7 lerq~plkvka 17 (26)
T 2f8e_A 7 LERQRPLKVKA 17 (26)
T ss_pred hhhcCcceeee
Confidence 77788887753
No 7
>4b0f_A C4B-binding protein alpha chain; complement system, immune system; 2.80A {Homo sapiens}
Probab=6.88 E-value=2.3e+02 Score=17.25 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=22.4
Q ss_pred HhhHHhhcc-CCCcccchHHHHHHHHHHH
Q psy1129 69 VLGPKLMAN-RKPFVLREVLIVYNLFQVL 96 (106)
Q Consensus 69 ~~Gp~~Mk~-RkPf~Lr~~l~~yNl~l~~ 96 (106)
..|.++|+- -.|.+.+..+-+|-+.+=+
T Consensus 18 ~~G~klmqCLp~p~dVk~ALEvYKlsLEI 46 (65)
T 4b0f_A 18 LTGKRLMQCLPNPEDVKMALEVYKLSLEI 46 (65)
T ss_dssp HHHHHHTTSSSSHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhcCCCHHHHhHHhheeechhhH
Confidence 579999996 4578999999999876543
No 8
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=5.16 E-value=4.3e+02 Score=15.09 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=14.9
Q ss_pred hccCCCcccchHHHHHHHHHH
Q psy1129 75 MANRKPFVLREVLIVYNLFQV 95 (106)
Q Consensus 75 Mk~RkPf~Lr~~l~~yNl~l~ 95 (106)
.|+|-+|+||.--.+-|+.--
T Consensus 8 lknrvayklkenaklenivar 28 (56)
T 3he4_A 8 LKNRVAYKLKENAKLENIVAR 28 (56)
T ss_dssp ---CCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchHHHHHHH
Confidence 579999999998888887643
No 9
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=5.16 E-value=4.8e+02 Score=16.54 Aligned_cols=16 Identities=6% Similarity=0.505 Sum_probs=14.8
Q ss_pred CchHHHHHHHHHHHHH
Q psy1129 52 SPVPTILICLTYVYIV 67 (106)
Q Consensus 52 sp~~~i~i~~~YL~~V 67 (106)
+|..++.++++|..+|
T Consensus 60 ~P~~VLv~sl~FIa~V 75 (87)
T 2ww9_C 60 DSLVVLFLSVGFIFSV 75 (87)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cCeeehhhHHHHHHHH
Confidence 7999999999999998
No 10
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=4.78 E-value=5.8e+02 Score=14.49 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=14.4
Q ss_pred CchHHHHHHHHHHHHH
Q psy1129 52 SPVPTILICLTYVYIV 67 (106)
Q Consensus 52 sp~~~i~i~~~YL~~V 67 (106)
+|..++.+++++..+|
T Consensus 29 ~P~~Vl~~si~~i~~V 44 (53)
T 1rh5_C 29 KPEHVIGVTVAFVIIE 44 (53)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CCeehhhhHHHHHHHH
Confidence 7999999999998888
Done!