Query psy1129
Match_columns 106
No_of_seqs 129 out of 742
Neff 5.4
Searched_HMMs 13730
Date Fri Aug 16 23:02:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1129.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1129hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 25.0 43 0.0031 16.9 3.5 20 77-96 6-25 (37)
2 d2d8za2 g.39.1.3 (A:33-64) Fou 8.7 20 0.0015 17.8 -0.9 15 70-84 10-25 (32)
3 d1gsaa1 c.30.1.3 (A:1-122) Pro 8.6 52 0.0038 20.0 0.9 17 74-90 84-100 (122)
4 d2odgc1 a.140.1.1 (C:2-47) Inn 6.1 83 0.006 16.6 0.8 19 15-33 1-19 (46)
5 d2glia2 g.37.1.1 (A:135-167) F 5.4 1.5E+02 0.011 14.4 1.5 15 76-90 12-26 (33)
6 d1bl0a1 a.4.1.8 (A:9-62) MarA 4.5 1.1E+02 0.0078 15.2 0.6 12 18-29 41-52 (54)
7 d1rlma_ c.108.1.10 (A:) Sugar 4.3 1.7E+02 0.012 18.2 1.7 13 70-82 257-269 (269)
8 d2i53a2 a.74.1.1 (A:158-267) C 4.0 3.7E+02 0.027 15.1 3.3 37 32-74 29-65 (110)
9 d1rxta2 d.108.1.2 (A:219-455) 3.7 1.1E+02 0.0078 20.7 0.1 36 13-49 39-81 (201)
10 d1rypa_ d.153.1.4 (A:) Proteas 3.5 2.1E+02 0.016 18.4 1.6 30 7-38 214-243 (243)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=25.04 E-value=43 Score=16.94 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=16.4
Q ss_pred cCCCcccchHHHHHHHHHHH
Q psy1129 77 NRKPFVLREVLIVYNLFQVL 96 (106)
Q Consensus 77 ~RkPf~Lr~~l~~yNl~l~~ 96 (106)
|++|.+|.+--..|-+.++.
T Consensus 6 n~q~veLNrtsLy~GlLlif 25 (37)
T d2axtl1 6 NRQPVELNRTSLYLGLLLIL 25 (37)
T ss_dssp SCCCBCCCHHHHHHHHHHHH
T ss_pred CCCccccchhhHHHHHHHHH
Confidence 57899999999999887654
No 2
>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.68 E-value=20 Score=17.83 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=10.2
Q ss_pred hhHH-hhccCCCcccc
Q psy1129 70 LGPK-LMANRKPFVLR 84 (106)
Q Consensus 70 ~Gp~-~Mk~RkPf~Lr 84 (106)
.|+| .||+-+||=++
T Consensus 10 ~GQry~~rd~~PyC~~ 25 (32)
T d2d8za2 10 SGQRFTARDDFAYCLN 25 (32)
T ss_dssp TTSCCEESSSSEECHH
T ss_pred cCceeeecCCCeehHH
Confidence 4665 48888888554
No 3
>d1gsaa1 c.30.1.3 (A:1-122) Prokaryotic glutathione synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.58 E-value=52 Score=20.03 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=13.6
Q ss_pred hhccCCCcccchHHHHH
Q psy1129 74 LMANRKPFVLREVLIVY 90 (106)
Q Consensus 74 ~Mk~RkPf~Lr~~l~~y 90 (106)
+||.-|||+.+.+-..|
T Consensus 84 ~mRkDPPfd~~Yl~~T~ 100 (122)
T d1gsaa1 84 LMRKDPPFDTEFIYATY 100 (122)
T ss_dssp EECCCCCCCHHHHHHHH
T ss_pred EEecCCCCcHHHHHHHH
Confidence 69999999998776555
No 4
>d2odgc1 a.140.1.1 (C:2-47) Inner nuclear membrane protein emerin {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.07 E-value=83 Score=16.58 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=13.7
Q ss_pred cccccccccchhHHHHHHH
Q psy1129 15 DDFTRVSDENLPEYLVMIV 33 (106)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (106)
|+|+++++..+.+-|++|-
T Consensus 1 d~y~~lSd~El~~lL~~y~ 19 (46)
T d2odgc1 1 DNYADLSDTELTTLLRRYN 19 (46)
T ss_dssp CGGGGSCHHHHHHHHHHTT
T ss_pred CchhhhcHHHHHHHHHHhC
Confidence 5788888877777766554
No 5
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.45 E-value=1.5e+02 Score=14.40 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=9.8
Q ss_pred ccCCCcccchHHHHH
Q psy1129 76 ANRKPFVLREVLIVY 90 (106)
Q Consensus 76 k~RkPf~Lr~~l~~y 90 (106)
++.+||+-+.-|+.|
T Consensus 12 R~~~pf~a~YkLv~H 26 (33)
T d2glia2 12 RELRPFKAQYMLVVH 26 (33)
T ss_dssp TTTCCCSSHHHHHHH
T ss_pred CCCCcchhHHHHHHH
Confidence 345688877776654
No 6
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=4.49 E-value=1.1e+02 Score=15.22 Aligned_cols=12 Identities=17% Similarity=0.515 Sum_probs=5.2
Q ss_pred ccccccchhHHH
Q psy1129 18 TRVSDENLPEYL 29 (106)
Q Consensus 18 ~~~~~~~~~~~~ 29 (106)
+..++.+.-+|+
T Consensus 41 k~~~g~tp~~Yl 52 (54)
T d1bl0a1 41 KKETGHSLGQYI 52 (54)
T ss_dssp HHHHSSCHHHHH
T ss_pred HHHHCcCHHHHh
Confidence 334444433444
No 7
>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia coli [TaxId: 562]}
Probab=4.34 E-value=1.7e+02 Score=18.21 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=7.7
Q ss_pred hhHHhhccCCCcc
Q psy1129 70 LGPKLMANRKPFV 82 (106)
Q Consensus 70 ~Gp~~Mk~RkPf~ 82 (106)
...++.++|.||+
T Consensus 257 ~i~~~l~~~~~~~ 269 (269)
T d1rlma_ 257 VIQAVLDNTYPFN 269 (269)
T ss_dssp HHHHHHHTCTTCC
T ss_pred HHHHHHhcCCCCC
Confidence 4456666666664
No 8
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.04 E-value=3.7e+02 Score=15.08 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=26.1
Q ss_pred HHHhhccCCCCccccccccCCchHHHHHHHHHHHHHHHhhHHh
Q psy1129 32 IVIANEKLPDPRTNNWFLMSSPVPTILICLTYVYIVKVLGPKL 74 (106)
Q Consensus 32 ~~~~~e~~~D~r~~~Wpl~~sp~~~i~i~~~YL~~V~~~Gp~~ 74 (106)
|.+.|+..+ .++. ...+...++++++|+... ..|...
T Consensus 29 W~~lNDs~r----T~lc-L~~~P~~IA~a~I~lA~~-~~~~~i 65 (110)
T d2i53a2 29 WTFVNDSLC----TTLS-LQWEPEIIAVAVMYLAGR-LCKFEI 65 (110)
T ss_dssp HHHHHHHTT----TTGG-GTSCHHHHHHHHHHHHHH-HHTCCG
T ss_pred HHHHHHHhc----CCch-hccCcHHHHHHHHHHHHH-HhCCCC
Confidence 555666653 3355 467888999999999998 556444
No 9
>d1rxta2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.66 E-value=1.1e+02 Score=20.66 Aligned_cols=36 Identities=14% Similarity=0.525 Sum_probs=21.2
Q ss_pred cccccccccccchh-------HHHHHHHHhhccCCCCccccccc
Q psy1129 13 RADDFTRVSDENLP-------EYLVMIVIANEKLPDPRTNNWFL 49 (106)
Q Consensus 13 ~~~~~~~~~~~~~~-------~~~~~~~~~~e~~~D~r~~~Wpl 49 (106)
+..+++.+...++| +|+.+|.+. ..+.++.+++|.+
T Consensus 39 ~~~glR~m~~kDv~~v~~Ll~~yl~~f~l~-~~f~~eev~Hwfl 81 (201)
T d1rxta2 39 KTAGLRPMETKDIPVVHQLLTRYLKQFHLT-PVMSQEEVEHWFY 81 (201)
T ss_dssp SCTTEEECCGGGSHHHHHHHHHHSTTSSBC-CCCCTTTTTTSSS
T ss_pred CCCccccCcHhhHHHHHHHHHHHHhcCceE-EecCHHHhheeec
Confidence 34567778887777 455444432 1233466778865
No 10
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.47 E-value=2.1e+02 Score=18.38 Aligned_cols=30 Identities=30% Similarity=0.469 Sum_probs=0.0
Q ss_pred eeeccccccccccccccchhHHHHHHHHhhcc
Q psy1129 7 ISIVSIRADDFTRVSDENLPEYLVMIVIANEK 38 (106)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 38 (106)
++|.=++-|+|+.+..+.+.+++ ..+.|++
T Consensus 214 iei~iitk~g~~~l~~eeI~~~l--~~i~e~~ 243 (243)
T d1rypa_ 214 LEVGVATKDKFFTLSAENIEERL--VAIAEQD 243 (243)
T ss_dssp EEEEEEETTEEEECCHHHHHHHH--HHHTTTC
T ss_pred EEEEEEeCCceEEeCHHHHHHHH--HHHhccC
Done!