RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy1129
         (106 letters)



>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family.  Members of this family are
           involved in long chain fatty acid elongation systems
           that produce the 26-carbon precursors for ceramide and
           sphingolipid synthesis. Predicted to be integral
           membrane proteins, in eukaryotes they are probably
           located on the endoplasmic reticulum. Yeast ELO3 affects
           plasma membrane H+-ATPase activity, and may act on a
           glucose-signaling pathway that controls the expression
           of several genes that are transcriptionally regulated by
           glucose such as PMA1.
          Length = 244

 Score = 75.0 bits (185), Expect = 7e-18
 Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 1/59 (1%)

Query: 48  FLMSSPVPTILICLTYVYIVKVLGPKLMANRKPFVLREVLIVYNLFQVLFSAWLFYETV 106
            L+SSP P ILI + Y+  V  LGPK+M NRKPF L+ +LIV+NLF VL S + FY  +
Sbjct: 1   PLLSSPWPVILIIVLYLVFVF-LGPKIMRNRKPFDLKRLLIVHNLFLVLLSLYGFYGLL 58


>gnl|CDD|222547 pfam14108, DUF4281, Domain of unknown function (DUF4281).  This
          family of proteins is functionally uncharacterized.
          This family of proteins is found in bacteria and
          eukaryotes. Proteins in this family are typically
          between 147 and 232 amino acids in length. There are
          two completely conserved residues (W and P) that may be
          functionally important.
          Length = 128

 Score = 26.4 bits (59), Expect = 2.0
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 6/43 (13%)

Query: 25 LPEYLVMIVIANEKLPDPRTNNWFLMSSPVPTILICLTYVYIV 67
          LP +L+MI     ++         +M+S +P + + L Y+Y++
Sbjct: 12 LPFWLLMIFAPRWRVTRR------VMASLLPFLALALLYLYLL 48


>gnl|CDD|219117 pfam06638, Strabismus, Strabismus protein.  This family consists of
           several strabismus (STB) or Van Gogh-like (VANGL)
           proteins 1 and 2. The exact function of this family is
           unknown. It is thought, however that STB1 gene and STB2
           may be potent tumour suppressor gene candidates.
          Length = 507

 Score = 26.6 bits (59), Expect = 2.7
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)

Query: 81  FVLREVLIVYNLFQVLFSAWLFY 103
           FV R +L+V  +F  LFS WLFY
Sbjct: 166 FVFRALLLVL-VFLFLFSYWLFY 187


>gnl|CDD|226452 COG3943, COG3943, Virulence protein [General function prediction
           only].
          Length = 329

 Score = 26.1 bits (57), Expect = 4.6
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 1   MVMKVLISIVSIRADDFTRVSDENLPEYLVM-IVIANEKLPDPRTNNWF 48
           +++ V   + S R   F + + + L EYL+   V+ +E+L +P   ++F
Sbjct: 86  VILAVGYRVRSARGTQFRQWATQTLQEYLIKGFVMDDERLKNPPVGDYF 134


>gnl|CDD|183885 PRK13191, PRK13191, putative peroxiredoxin; Provisional.
          Length = 215

 Score = 25.6 bits (56), Expect = 6.0
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 23 ENLPEYLVMIVIANEKLPDPRTNNWF-LMSSPVPTILICLTYVY 65
          E  PE  V+      KLPD     WF L S P     +C T  Y
Sbjct: 11 EKFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFY 54


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.329    0.143    0.429 

Gapped
Lambda     K      H
   0.267   0.0781    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,595,118
Number of extensions: 487192
Number of successful extensions: 447
Number of sequences better than 10.0: 1
Number of HSP's gapped: 446
Number of HSP's successfully gapped: 21
Length of query: 106
Length of database: 10,937,602
Length adjustment: 71
Effective length of query: 35
Effective length of database: 7,788,468
Effective search space: 272596380
Effective search space used: 272596380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.1 bits)