RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1129
         (106 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 24/85 (28%)

Query: 15  DDFTRVSDENLPEYLVMIVIANEKL-------------PDPRTNNWFLMSSPV--PTILI 59
            D  + S E L E L+   +  EK+             P    +  +L+S P+  P  LI
Sbjct: 185 GDLIKFSAETLSE-LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP--LI 241

Query: 60  CLT----YVYIVKVLG--PKLMANR 78
            +     YV   K+LG  P  + + 
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSY 266



 Score = 26.9 bits (59), Expect = 1.5
 Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 12/83 (14%)

Query: 20  VSDENLPEYLVMIVIANEKLPDPR------TN--NWFLMSSPVPTILICLTYVYIVKVLG 71
           +S+    +    +   N  LP  +       N     ++S P P  L  L  + + K   
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP-PQSLYGLN-LTLRKAKA 398

Query: 72  P-KLMANRKPFVLREVLIVYNLF 93
           P  L  +R PF  R+ L   N F
Sbjct: 399 PSGLDQSRIPFSERK-LKFSNRF 420


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 37.1 bits (85), Expect = 3e-04
 Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 23/107 (21%)

Query: 3   MKVLISIVSIRADDFTRVSDENLPEYLVMIVIANEKLPDP--RTNNW-FLMSSPVPTIL- 58
             +L+  +  R  D  R      P    + +IA E + D     +NW  +    + TI+ 
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNP--RRLSIIA-ESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 59  ICLTYVYIVKVLGPKLMANRKPF----VLRE-VLIVYNLFQVLFSAW 100
             L       VL P     RK F    V      I   L  ++   W
Sbjct: 361 SSL------NVLEPAEY--RKMFDRLSVFPPSAHIPTILLSLI---W 396


>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural
           genomics, protein structure initiative; 1.74A
           {Archaeoglobus fulgidus} SCOP: e.71.1.1
          Length = 205

 Score = 25.3 bits (55), Expect = 4.4
 Identities = 9/35 (25%), Positives = 15/35 (42%)

Query: 4   KVLISIVSIRADDFTRVSDENLPEYLVMIVIANEK 38
            V      +R +D T  +   LP  +  I+  +EK
Sbjct: 81  VVYKIKRRLRYEDLTPAAKTELPYVIEHIIKQDEK 115


>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation,
           antigen processing, hydrolase, protease; 1.90A
           {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G*
           1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G*
           3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G*
           3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
          Length = 243

 Score = 24.5 bits (54), Expect = 8.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 7   ISIVSIRADDFTRVSDENLPEYLVMI 32
           + +     D F  +S EN+ E LV I
Sbjct: 214 LEVGVATKDKFFTLSAENIEERLVAI 239


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.329    0.143    0.429 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,627,239
Number of extensions: 85121
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 9
Length of query: 106
Length of database: 6,701,793
Length adjustment: 71
Effective length of query: 35
Effective length of database: 4,719,402
Effective search space: 165179070
Effective search space used: 165179070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.6 bits)