RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1129
         (106 letters)



>d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531
          {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 180

 Score = 24.3 bits (53), Expect = 3.4
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 12 IRADDFTRVSDENLPEYLVMIVIANEK 38
          +R +D T  +   LP  +  I+  +EK
Sbjct: 72 LRYEDLTPAAKTELPYVIEHIIKQDEK 98


>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
           {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 202

 Score = 23.6 bits (50), Expect = 5.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 7   ISIVSIRADDFTRVSDENLPEYL 29
           I +V I  D+F + S E + + L
Sbjct: 175 IDVVKITEDEFYQYSPEEVEQIL 197


>d1qzma_ c.37.1.20 (A:) ATPase domain of protease Lon (La)
          {Escherichia coli [TaxId: 562]}
          Length = 94

 Score = 22.9 bits (49), Expect = 6.9
 Identities = 5/29 (17%), Positives = 15/29 (51%)

Query: 1  MVMKVLISIVSIRADDFTRVSDENLPEYL 29
          +  K +  ++  ++     ++ +NL +YL
Sbjct: 61 LCRKAVKQLLLDKSLKHIEINGDNLHDYL 89


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.143    0.429 

Gapped
Lambda     K      H
   0.267   0.0656    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 396,747
Number of extensions: 16464
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 3
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.0 bits)