RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11293
(111 letters)
>gnl|CDD|197624 smart00280, KAZAL, Kazal type serine protease inhibitors. Kazal
type serine protease inhibitors and follistatin-like
domains.
Length = 46
Score = 50.4 bits (121), Expect = 5e-10
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 54 ECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASCSTKTNLTIKYYGKC 104
+CP+ CP PVCGS+GV Y + C +A+C + ++ +K+ G C
Sbjct: 1 DCPEACPRE-----YDPVCGSDGVTYSNECHLCKAACESGKSIEVKHDGPC 46
>gnl|CDD|238052 cd00104, KAZAL_FS, Kazal type serine protease inhibitors and
follistatin-like domains. Kazal inhibitors inhibit
serine proteases, such as, trypsin, chyomotrypsin, avian
ovomucoids, and elastases. The inhibitory domain has one
reactive site peptide bond, which serves the cognate
enzyme as substrate. The reactive site peptide bond is a
combining loop which has an identical conformation in
all Kazal inhibitors and in all enzyme/inhibitor
complexes. These Kazal domains (small hydrophobic core
of alpha/beta structure with 3 to 4 disulfide bonds)
often occur in tandem arrays. Similar domains are also
present in follistatin (FS) and follistatin-like family
members, which play an important role in tissue specific
regulation. The FS domain consists of an N-terminal beta
hairpin (FOLN/EGF-like domain) and a Kazal-like domain
and has five disulfide bonds. Although the Kazal-like
FS substructure is similar to Kazal proteinase
inhibitors, no FS domain has yet been shown to be a
proteinase inhibitor. Follistatin-like family members
include SPARC, also known as, BM-40 or osteonectin, the
Gallus gallus Flik protein, as well as, agrin which has
a long array of FS domains. The kazal-type inhibitor
domain has also been detected in an extracellular loop
region of solute carrier 21 (SLC21) family members
(organic anion transporters) , which may regulate the
specificity of anion uptake. The distant homolog,
Ascidian trypsin inhibitor, is included in this CD.
Length = 41
Score = 43.8 bits (104), Expect = 2e-07
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 69 RPVCGSNGVDYKDLCEFQRASCSTKTNLTIKYYGKC 104
PVCGS+G Y + C A+C + ++T+ + G C
Sbjct: 6 DPVCGSDGKTYSNECHLGCAACRSGRSITVAHNGPC 41
>gnl|CDD|191798 pfam07648, Kazal_2, Kazal-type serine protease inhibitor domain.
Usually indicative of serine protease inhibitors.
However, kazal-like domains are also seen in the
extracellular part of agrins, which are not known to be
protease inhibitors. Kazal domains often occur in tandem
arrays. Small alpha+beta fold containing three
disulphides.
Length = 42
Score = 38.5 bits (90), Expect = 2e-05
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 70 PVCGSNGVDYKDLCEFQRASCSTKTNLTIKYYGKC 104
PVCGS+G Y + C ASC + +KY G C
Sbjct: 8 PVCGSDGKTYSNKCALCCASCLLGEKIKVKYEGSC 42
>gnl|CDD|238649 cd01328, FSL_SPARC, Follistatin-like SPARC (secreted protein,
acidic, and rich in cysteines) domain;
SPARC/BM-40/osteonectin is a multifunctional
glycoprotein which modulates cellular interaction with
the extracellular matrix by its binding to structural
matrix proteins such as collagen and vitronectin. The
protein it composed of an N-terminal acidic region, a
follistatin (FS) domain and an EF-hand calcium binding
domain. The FS domain consists of an N-terminal beta
hairpin (FOLN/EGF-like domain) and a small hydrophobic
core of alpha/beta structure (Kazal domain) and has five
disulfide bonds and a conserved N-glycosylation site.
The FSL_SPARC domain is a member of the superfamily of
kazal-like proteinase inhibitors and follistatin-like
proteins.
Length = 86
Score = 36.7 bits (85), Expect = 2e-04
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 14/86 (16%)
Query: 30 PCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRAS 89
PC+ + C G C ++ T KC C CP D R VC ++ + CE R
Sbjct: 1 PCENHHCGAGKVCEVDDENTP-KCVCIDPCPEEVDD--RRKVCTNDNETFDSDCELYRTR 57
Query: 90 CSTKTN-----------LTIKYYGKC 104
C K L + YYG+C
Sbjct: 58 CLCKGGKKGCRGPKYQHLHLDYYGEC 83
>gnl|CDD|200959 pfam00050, Kazal_1, Kazal-type serine protease inhibitor domain.
Usually indicative of serine protease inhibitors.
However, kazal-like domains are also seen in the
extracellular part of agrins, which are not known to be
protease inhibitors. Kazal domains often occur in tandem
arrays. Small alpha+beta fold containing three
disulphides. Alignment also includes a single domain
from transporters in the OATP/PGT family.
Length = 48
Score = 33.1 bits (76), Expect = 0.003
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 69 RPVCGSNGVDYKDLCEFQRASCSTKTNLTIKYYGKC 104
PVCGS+GV Y + CE + TN+ K+ G C
Sbjct: 13 DPVCGSDGVTYSNECELCNENVKQGTNIHKKHDGPC 48
>gnl|CDD|238648 cd01327, KAZAL_PSTI, Kazal-type pancreatic secretory trypsin
inhibitors (PSTI) and related proteins, including the
second domain of the ovomucoid turkey inhibitor and the
C-terminal domain of the esophagus cancer-related gene-2
protein (ECRG-2), are members of the superfamily of
kazal-type proteinase inhibitors and follistatin-like
proteins.
Length = 45
Score = 28.8 bits (65), Expect = 0.100
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 69 RPVCGSNGVDYKDLCEFQRASCSTKTNLTIKYYGKC 104
PVCG++GV Y + C + +TN+ IK+ G+C
Sbjct: 10 DPVCGTDGVTYSNECLLCAENLKRQTNIRIKHDGEC 45
>gnl|CDD|232985 TIGR00463, gltX_arch, glutamyl-tRNA synthetase, archaeal and
eukaryotic family. The glutamyl-tRNA synthetases of the
eukaryotic cytosol and of the Archaea are more similar
to glutaminyl-tRNA synthetases than to bacterial
glutamyl-tRNA synthetases. This model models just the
eukaryotic cytosolic and archaeal forms of the enzyme.
In some eukaryotes, the glutamyl-tRNA synthetase is part
of a longer, multifunctional aminoacyl-tRNA ligase. In
many species, the charging of tRNA(gln) proceeds first
through misacylation with Glu and then transamidation.
For this reason, glutamyl-tRNA synthetases, including
all known archaeal enzymes (as of 2010) may act on both
tRNA(gln) and tRNA(glu) [Protein synthesis, tRNA
aminoacylation].
Length = 556
Score = 27.5 bits (61), Expect = 1.8
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 37 QYGAKCIPSEDGTSYKCECPQE 58
Y K I E G +Y C+C E
Sbjct: 174 DYTRKLI--EMGKAYVCDCRPE 193
>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a
large number of membrane-bound and extracellular
(mostly animal) proteins. Many of these proteins
require calcium for their biological function and
calcium-binding sites have been found to be located at
the N-terminus of particular EGF-like domains;
calcium-binding may be crucial for numerous
protein-protein interactions. Six conserved core
cysteines form three disulfide bridges as in non
calcium-binding EGF domains, whose structures are very
similar. EGF_CA can be found in tandem repeat
arrangements.
Length = 38
Score = 24.5 bits (54), Expect = 3.2
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 29 NPCQE-NTCQYGAKCIPSEDGTSYKCECP 56
+ C N CQ G C+ + SY+C CP
Sbjct: 3 DECASGNPCQNGGTCVNTVG--SYRCSCP 29
>gnl|CDD|148805 pfam07406, NICE-3, NICE-3 protein. This family consists of
several eukaryotic NICE-3 and related proteins. The
gene coding for NICE-3 is part of the epidermal
differentiation complex (EDC) which comprises a large
number of genes that are of crucial importance for the
maturation of the human epidermis. The function of
NICE-3 is unknown.
Length = 186
Score = 25.5 bits (56), Expect = 5.5
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 45 SEDGTSYKCECPQECPNY 62
S DG + + Q P Y
Sbjct: 80 STDGDKFISQPDQNLPPY 97
>gnl|CDD|233633 TIGR01913, bet_lambda, phage recombination protein Bet. This model
represents the phage recombination protein Bet from a
number of phage, including phage lambda. All members of
this family are found in phage genomes or in putative
prophage regions of bacterial genomes [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 188
Score = 25.2 bits (55), Expect = 7.3
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 84 EFQRASCSTKTNLTIKYYGKCGKW 107
E C + + I+ CG W
Sbjct: 96 ERNDEGCEIEGVVKIRQDALCGGW 119
>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain.
Length = 39
Score = 23.7 bits (52), Expect = 7.6
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 29 NPCQE-NTCQYGAKCIPSEDGTSYKCECP 56
+ C N CQ G C+ + SY+CECP
Sbjct: 3 DECASGNPCQNGGTCVNTVG--SYRCECP 29
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.141 0.486
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,183,737
Number of extensions: 386367
Number of successful extensions: 299
Number of sequences better than 10.0: 1
Number of HSP's gapped: 292
Number of HSP's successfully gapped: 29
Length of query: 111
Length of database: 10,937,602
Length adjustment: 75
Effective length of query: 36
Effective length of database: 7,611,052
Effective search space: 273997872
Effective search space used: 273997872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)