RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11293
(111 letters)
>1lr7_A Follistatin, FS1; heparin-binding, cystine-rich, sucrose
octasulphate, hormone/growth factor complex; HET: SO4;
1.50A {Rattus norvegicus} SCOP: g.3.11.3 g.68.1.1 PDB:
1lr8_A* 1lr9_A
Length = 74
Score = 63.0 bits (153), Expect = 7e-15
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRA 88
C+ C G KC ++ +C C +C N T PVCG +G Y++ C +A
Sbjct: 2 ETCENVDCGPGKKCRMNKKNKP-RCVCAPDCSNI---TWKGPVCGLDGKTYRNECALLKA 57
Query: 89 SCSTKTNLTIKYYGKC 104
C + L ++Y GKC
Sbjct: 58 RCKEQPELEVQYQGKC 73
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 54.6 bits (130), Expect = 2e-10
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 6/81 (7%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRA 88
PCQ + C++G C E+ T C C VC ++ + C F
Sbjct: 4 APCQNHHCKHGKVCELDENNTP-MCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFAT 62
Query: 89 SCSTKTN-----LTIKYYGKC 104
C+ + L + Y G C
Sbjct: 63 KCTLEGTKKGHKLHLDYIGPC 83
>1y1b_A Elastase inhibitor; non-classical, kazal-type, protease inhibitor,
CSH motif, hydrolase inhibitor; NMR {Synthetic} PDB:
1y1c_A
Length = 48
Score = 50.3 bits (120), Expect = 4e-10
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 52 KCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASCSTKTNLTIKYYGKC 104
K +CP C D PVCGS+G+ Y + C ASC + T + + + G+C
Sbjct: 1 KPDCPLICTMQYD-----PVCGSDGITYGNACMLLGASCRSDTPIELVHKGRC 48
>2arp_F Follistatin; cystine knot, disulfide rich, EGF domain, kazal
domain, PROT complex, hormone-growth factor complex;
HET: 1PG; 2.00A {Rattus norvegicus}
Length = 152
Score = 50.7 bits (120), Expect = 2e-09
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRA 88
C++ C + C+ + +Y C + CP + +CG++GV Y C ++A
Sbjct: 77 KTCRDVFCPGSSTCVVDQTNNAYCVTCNRICPEPSSS--EQSLCGNDGVTYSSACHLRKA 134
Query: 89 SCSTKTNLTIKYYGKCGK 106
+C ++ + Y GKC K
Sbjct: 135 TCLLGRSIGLAYEGKCIK 152
Score = 49.5 bits (117), Expect = 6e-09
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRA 88
C+ C G KC ++ +C C +C N T PVCG +G Y++ C +A
Sbjct: 4 ETCENVDCGPGKKCRMNKKNKP-RCVCAPDCSNI---TWKGPVCGLDGKTYRNECALLKA 59
Query: 89 SCSTKTNLTIKYYGKC 104
C + L ++Y GKC
Sbjct: 60 RCKEQPELEVQYQGKC 75
>3b4v_C Follistatin-like 3; ligand-inhibitor signalling complex, cleavage
on PAIR of BAS residues, glycoprotein, growth factor,
hormone, secreted; HET: NAG; 2.48A {Homo sapiens}
Length = 237
Score = 49.5 bits (117), Expect = 2e-08
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRA 88
+ C C G C G +CEC +C VCGS+G Y+D CE + A
Sbjct: 71 DSCDGVECGPGKACR--MLGGRPRCECAPDCSG---LPARLQVCGSDGATYRDECELRAA 125
Query: 89 SCSTKTNLTIKYYGKCGKW 107
C +L++ Y G+C K
Sbjct: 126 RCRGHPDLSVMYRGRCRKS 144
Score = 48.0 bits (113), Expect = 5e-08
Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 28 TNPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQR 87
C+ C C+ + G+++ C + P + + +CG+N V Y C ++
Sbjct: 142 RKSCEHVVCPRPQSCVVDQTGSAH-CVVCRAAPCPVPSSPGQELCGNNNVTYISSCHMRQ 200
Query: 88 ASCSTKTNLTIKYYGKCG 105
A+C ++ +++ G C
Sbjct: 201 ATCFLGRSIGVRHAGSCA 218
Score = 27.6 bits (60), Expect = 0.82
Identities = 4/37 (10%), Positives = 7/37 (18%)
Query: 58 ECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASCSTKT 94
C +R C ++G
Sbjct: 21 TCSLVLQTDVTRAECCASGNIDTAWSNLTHPGNKINL 57
>3sek_C Follistatin-related protein 3; protein-protein complex, TB domain,
cystine knot motif, TGF- fold, disulfide linked dimer,
follistatin domain (FSD); HET: NAG; 2.40A {Homo sapiens}
PDB: 2kcx_A
Length = 209
Score = 48.4 bits (114), Expect = 3e-08
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRA 88
+ C C G C +CEC +C VCGS+G Y+D CE + A
Sbjct: 62 DSCDGVECGPGKACRMLGGRP--RCECAPDCSGLPAR---LQVCGSDGATYRDECELRAA 116
Query: 89 SCSTKTNLTIKYYGKCGKW 107
C +L++ Y G+C K
Sbjct: 117 RCRGHPDLSVMYRGRCRKS 135
Score = 46.8 bits (110), Expect = 1e-07
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRA 88
C+ C C+ + G+ C + P + + +CG+N V Y C ++A
Sbjct: 134 KSCEHVVCPRPQSCVVDQTGS-AHCVVCRAAPCPVPSSPGQELCGNNNVTYISSCHMRQA 192
Query: 89 SCSTKTNLTIKYYGKCG 105
+C ++ +++ G C
Sbjct: 193 TCFLGRSIGVRHAGSCA 209
>3hh2_C Follistatin; protein-protein complex, TB domain, cystine knot
motif, TGF- fold, disulfide linked dimer, CLE PAIR of
basic residues, cytokine; HET: CIT; 2.15A {Homo sapiens}
PDB: 2b0u_C* 2p6a_D
Length = 288
Score = 48.1 bits (113), Expect = 6e-08
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
Query: 7 CYQIFLILDFLYACYIFPPELTNPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHT 66
++ A P + C+ C G KC ++ +C C +C N
Sbjct: 44 NTLFKWMIFNGGAPNCIPCK--ETCENVDCGPGKKCRMNKKNK-PRCVCAPDCSNITWK- 99
Query: 67 GSRPVCGSNGVDYKDLCEFQRASCSTKTNLTIKYYGKCGK 106
PVCG +G Y++ C +A C + L ++Y G+C K
Sbjct: 100 --GPVCGLDGKTYRNECALLKARCKEQPELEVQYQGRCKK 137
Score = 43.8 bits (102), Expect = 2e-06
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 20 CYIFPPELTNPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDY 79
Y C++ C G KC+ D + C D PVC S+ Y
Sbjct: 205 AYEGKCIKAKSCEDIQCTGGKKCL--WDFKVGRGRCSLCDELCPDSKSDEPVCASDNATY 262
Query: 80 KDLCEFQRASCSTKTNLTIKYYGKC 104
C + A+CS+ L +K+ G C
Sbjct: 263 ASECAMKEAACSSGVLLEVKHSGSC 287
Score = 42.7 bits (99), Expect = 5e-06
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 26 ELTNPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEF 85
C++ C + C+ + +Y C + CP + +CG++GV Y C
Sbjct: 134 RCKKTCRDVFCPGSSTCVVDQTNNAYCVTCNRICPEPASS--EQYLCGNDGVTYSSACHL 191
Query: 86 QRASCSTKTNLTIKYYGKCGKW 107
++A+C ++ + Y GKC K
Sbjct: 192 RKATCLLGRSIGLAYEGKCIKA 213
Score = 26.9 bits (58), Expect = 1.6
Identities = 6/60 (10%), Positives = 13/60 (21%), Gaps = 6/60 (10%)
Query: 45 SEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASCSTKTNLTIKYYGKC 104
+ +C+ + S+ C S G E + +
Sbjct: 5 LRQAKNGRCQVLYKTE------LSKEECCSTGRLSTSWTEEDVNDNTLFKWMIFNGGAPN 58
>1uvf_A Serine proteinase inhibitor kazal type 5; trypsin inhibitor,
protease; NMR {Homo sapiens}
Length = 61
Score = 42.9 bits (101), Expect = 4e-07
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 52 KCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASCSTKTNLTIKYYGKC 104
CP +PVCG +G Y + C + +TN I+ GKC
Sbjct: 13 LPRIGYLCPKD-----LKPVCGDDGQTYNNPCMLCHENLIRQTNTHIRSTGKC 60
>1uvg_A Serine proteinase inhibitor kazal type 5; trypsin inhibitor,
protease; NMR {Homo sapiens}
Length = 78
Score = 42.0 bits (98), Expect = 1e-06
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 53 CECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASCSTKTNLTIKYYGKCGK 106
CP +PVCG +G Y + C + +TN I+ GKC +
Sbjct: 14 PRIGYLCPKD-----LKPVCGDDGQTYNNPCMLCHENLIRQTNTHIRSTGKCEE 62
>1pce_A PEC-60; proteinase inhibitor(kazal type); NMR {Sus scrofa} SCOP:
g.68.1.1
Length = 60
Score = 41.4 bits (97), Expect = 1e-06
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 52 KCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASCSTKTNLTIKYYGKC 104
CE E P+ PVCG++GV Y+ C+ A K ++ I G+C
Sbjct: 10 ICEHMTESPDCSRI--YDPVCGTDGVTYESECKLCLARIENKQDIQIVKDGEC 60
>1tbr_R RHODNIIN; complex (serine protease-inhibitor), kazal-type
inhibitor, T complex (serine protease-inhibitor)
complex; 2.60A {Rhodnius prolixus} SCOP: g.68.1.1
g.68.1.1 PDB: 1tbq_R
Length = 103
Score = 41.3 bits (96), Expect = 4e-06
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 36 CQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASCSTKTN 95
+ + DG E C +PVCGS+ + Y + C + AS S+
Sbjct: 34 FNGKPELVKVHDGPCEPDEDEDVCQECDGDE-YKPVCGSDDITYDNNCRLECASISSSPG 92
Query: 96 LTIKYYGKC 104
+ +K+ G C
Sbjct: 93 VELKHEGPC 101
Score = 35.9 bits (82), Expect = 4e-04
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 53 CECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASCSTKTNLTIKYYGKC 104
P CP+ VCGS+G Y + C A + K L + G C
Sbjct: 2 GGEPCACPHALH-----RVCGSDGETYSNPCTLNCAKFNGKPELVKVHDGPC 48
>2f3c_I Thrombin inhibitor infestin; serine protease - inhibitor complex,
kazal-type domain, hydrolase/hydrolase inhibitor
complex; 2.50A {Triatoma infestans} SCOP: g.68.1.1 PDB:
1kma_A
Length = 55
Score = 39.9 bits (93), Expect = 4e-06
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 9/52 (17%)
Query: 53 CECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASCSTKTNLTIKYYGKC 104
C CP+ VCGS+G Y + C A K +L + G C
Sbjct: 6 CACPRV---------LHRVCGSDGNTYSNPCTLDCAKHEGKPDLVQVHEGPC 48
>2leo_A Serine protease inhibitor kazal-type 7; esophageal cancer-related
gene 2, hydrol inhibitor; NMR {Homo sapiens}
Length = 66
Score = 40.0 bits (93), Expect = 6e-06
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 69 RPVCGSNGVDYKDLCEFQRASCSTKTNLTIKYYGKC 104
PVCGS+ + Y + C S + + + G C
Sbjct: 31 LPVCGSDYITYGNECHLCTESLKSNGRVQFLHDGSC 66
>2jxd_A Serine protease inhibitor kazal-type 2; anti-parallel beta sheet,
beta-bulge, disulfide bond, alpha helix, pyrrolidone
carboxylic acid, secreted; NMR {Homo sapiens}
Length = 62
Score = 39.1 bits (91), Expect = 1e-05
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 69 RPVCGSNGVDYKDLCEFQRASCSTKTNLTIKYYGKC 104
PVCGS+ Y + C N+ I G C
Sbjct: 27 NPVCGSDMSTYANECTLCMKIREGGHNIKIIRNGPC 62
>1cgj_I Pancreatic secretory trypsin inhibitor (kazal type) variant 4;
serine protease/inhibitor complex; 2.30A {Homo sapiens}
SCOP: g.68.1.1
Length = 56
Score = 38.3 bits (89), Expect = 2e-05
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 69 RPVCGSNGVDYKDLCEFQRASCSTKTNLTIKYYGKC 104
RPVCG++G Y + C + +T++ I+ G C
Sbjct: 21 RPVCGTDGDTYPNECVLCFENRKRQTSILIQKSGPC 56
>1r0r_I Ovomucoid, omtky3; high resolution, serine protease, protein
inhibitor, hydrolase; 1.10A {Meleagris gallopavo} SCOP:
g.68.1.1 PDB: 1sgr_I 2gkr_I 1cho_I 1omt_A 1omu_A 1ppf_I*
1tur_A 1tus_A 3sgb_I 2ovo_A 4ovo_A 1iy5_A 1cso_I 1ct4_I
2sgf_I 2gkt_I 2gkv_A 2nu0_I 1m8b_A 1m8c_A ...
Length = 51
Score = 38.3 bits (89), Expect = 2e-05
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 69 RPVCGSNGVDYKDLCEFQRASCSTKTNLTIKYYGKC 104
RP+CGS+ Y + C F A + LT+ ++GKC
Sbjct: 16 RPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 51
>1yu6_C Ovomucoid; protein proteinase inhibitor, protease, hydrolase; 1.55A
{Meleagris gallopavo} SCOP: g.68.1.1 PDB: 1z7k_B*
Length = 185
Score = 40.0 bits (92), Expect = 3e-05
Identities = 17/74 (22%), Positives = 27/74 (36%)
Query: 31 CQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASC 90
++ T + E P RP+CGS+ Y + C F A
Sbjct: 112 LEQGTSVGKKHDGECRKELAAVSVDCSEYPKPACTLEYRPLCGSDNKTYGNKCNFCNAVV 171
Query: 91 STKTNLTIKYYGKC 104
+ LT+ ++GKC
Sbjct: 172 ESNGTLTLSHFGKC 185
Score = 35.8 bits (81), Expect = 0.001
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 5/86 (5%)
Query: 19 ACYIFPPELTNPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVD 78
E C + TS + + C + VCG++GV
Sbjct: 46 NIEYGTNISKEHDGECREAVPMDCSRYPNTTSEEGKVMILCNKALNP-----VCGTDGVT 100
Query: 79 YKDLCEFQRASCSTKTNLTIKYYGKC 104
Y + C + T++ K+ G+C
Sbjct: 101 YDNECVLCAHNLEQGTSVGKKHDGEC 126
Score = 31.1 bits (69), Expect = 0.043
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 41 KCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASCSTKTNLTIKY 100
C + T+ + + C RP+CG++GV + C + TN++ ++
Sbjct: 4 DCSRFPNTTNEEGKDVLVCT-----EDLRPICGTDGVTH-SECLLCAYNIEYGTNISKEH 57
Query: 101 YGKCGKW 107
G+C +
Sbjct: 58 DGECREA 64
>2erw_A Serine protease inhibitor infestin; kazal type domain, blood
clotting, hydrolase inhibitor; 1.40A {Triatoma
infestans} SCOP: g.68.1.1
Length = 56
Score = 38.0 bits (88), Expect = 3e-05
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 52 KCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASCSTKTNLTIKYYGKC 104
+ P C PVCGS+G Y + C A+ + L + + G+C
Sbjct: 1 EVRNPCACFRN-----YVPVCGSDGKTYGNPCMLNCAAQTKVPGLKLVHEGRC 48
>1tgs_I Pancreatic secretory trypsin inhibitor (kazal type); complex
(proteinase/inhibitor); 1.80A {Sus scrofa} SCOP:
g.68.1.1 PDB: 1cgi_I 1hpt_A
Length = 56
Score = 36.8 bits (85), Expect = 7e-05
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 69 RPVCGSNGVDYKDLCEFQRASCSTKTNLTIKYYGKC 104
PVCG++G+ Y + C + +T + I+ G C
Sbjct: 21 NPVCGTDGITYSNECVLCSENKKRQTPVLIQKSGPC 56
>1bus_A Proteinase inhibitor IIA; HET: PCA; NMR {Bos taurus} SCOP: g.68.1.1
PDB: 2bus_A*
Length = 57
Score = 36.7 bits (85), Expect = 8e-05
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 58 ECPNYGDHTG-----SRPVCGSNGVDYKDLCEFQRASCSTKTNLTIKYYGKC 104
+C + D S P CGSNG Y + C F +A + + +K+ GKC
Sbjct: 6 DCAEFKDPKVYCTRESNPHCGSNGETYGNKCAFCKAVMKSGGKINLKHRGKC 57
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 35.2 bits (80), Expect = 0.002
Identities = 13/83 (15%), Positives = 22/83 (26%), Gaps = 6/83 (7%)
Query: 20 CYIFPPELTNPCQENTCQYGAKCIPSEDGTSYKCECPQ---ECPNYGDHTGSRPVCGSNG 76
P E + C G C +D C+C + + G
Sbjct: 182 GGGSPCEAGEEGEGGVCLNGGVCSVVDDQ--AVCDCSRTGFRGKDCSQGKEEYIATF-KG 238
Query: 77 VDYKDLCEFQRASCSTKTNLTIK 99
+Y Q S+ +T+
Sbjct: 239 SEYFCYDLSQNPIQSSSDEITLS 261
Score = 33.7 bits (76), Expect = 0.008
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 25 PELTNPCQENTCQYGAKCIPSEDGTSYKCECPQ 57
+ CQE++C C+ DG + C+C
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDG--FSCDCSM 1044
Score = 31.4 bits (70), Expect = 0.052
Identities = 10/49 (20%), Positives = 14/49 (28%), Gaps = 2/49 (4%)
Query: 28 TNPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNG 76
PC N C+ C + Y C+C V +G
Sbjct: 619 AKPCLSNPCKNNGMCRDGWNR--YVCDCSGTGYLGRSCEREATVLSYDG 665
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 33.8 bits (77), Expect = 0.006
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 28 TNPCQENTCQYGAKCIPSEDGTSYKCECPQEC 59
+ CQE++C C+ DG + C+C
Sbjct: 185 STTCQEDSCSNQGVCLQQWDG--FSCDCSMTS 214
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 30.1 bits (68), Expect = 0.11
Identities = 8/28 (28%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECP 56
+PC C + C S Y C C
Sbjct: 6 SPCISQPCLHNGSCQDSIW--GYTCTCS 31
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 29.0 bits (65), Expect = 0.13
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECP 56
C E C G C + + + C+CP
Sbjct: 49 KSCSEPRCFNGGTCQQALYFSDFVCQCP 76
>3qtl_D Kazal-type serine protease inhibitor SPI-1; serine protease
-kazal type serine protease inhibitor comple hydrolase
inhibitor; 2.60A {Carcinoscorpius rotundicauda}
Length = 75
Score = 28.4 bits (63), Expect = 0.17
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 69 RPVCGSNGVDYKDLCEFQRASCSTK 93
+PVCG+NG Y + C +A
Sbjct: 8 KPVCGANGEVYDNECFLNKAGIEPA 32
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular
MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 28.5 bits (64), Expect = 0.25
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 30 PCQENTCQYGAKCIPSEDGTSYKCECP 56
C N C+ G C+P S+ CECP
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECP 28
Score = 25.8 bits (57), Expect = 2.4
Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 28 TNPCQENTCQYGAKCIPSEDGT-----SYKCECP 56
PC N C G C SE Y C+CP
Sbjct: 52 AGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCP 85
Score = 25.4 bits (56), Expect = 4.1
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECP 56
N C+ C+ G C + +Y CECP
Sbjct: 98 NECEVEPCKNGGICT--DLVANYSCECP 123
>2xrc_A Human complement factor I; immune system, hydrolase,
conglutinogen activating factor, S protease, complement
system; HET: NAG; 2.69A {Homo sapiens}
Length = 565
Score = 28.7 bits (64), Expect = 0.31
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 30 PCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRAS 89
C + CQ +CI +GT C+ P +CP G VC +N + C+ +
Sbjct: 24 SCDKVFCQPWQRCI---EGT-CVCKLPYQCPKNGT-----AVCATNRRSFPTYCQQKSLE 74
Query: 90 CSTKT 94
C
Sbjct: 75 CLHPG 79
>3tjq_A Serine protease HTRA1; hydrolase; 2.00A {Homo sapiens}
Length = 140
Score = 28.4 bits (62), Expect = 0.38
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 35 TCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASCST-- 92
C G +C+ + + S PVCGS+ Y +LC+ + AS +
Sbjct: 64 PCGEGLQCVVPFGVPASATVRRRAQAGLCVCASSEPVCGSDANTYANLCQLRAASRRSER 123
Query: 93 --KTNLTIKYYGKCGK 106
+ + + G CG
Sbjct: 124 LHRPPVIVLQRGACGN 139
>3p5b_L Low density lipoprotein receptor variant; B-propellor,
convertase, hydrolase-lipid binding P complex; 3.30A
{Homo sapiens} PDB: 3p5c_L
Length = 400
Score = 28.3 bits (62), Expect = 0.45
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHT 66
N C +N C + G Y+C CP
Sbjct: 1 NECLDNNGGCSHVCNDLKIG--YECLCPDGFQLVAQRR 36
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens}
PDB: 2rhp_A*
Length = 634
Score = 28.1 bits (62), Expect = 0.69
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 28 TNPCQENTCQYGAKCIPSEDGTSYKC-ECP 56
+ C N C GA+C DG S+ C CP
Sbjct: 3 PDGCLSNPCFPGAQCSSFPDG-SWSCGFCP 31
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 0.80
Identities = 19/108 (17%), Positives = 32/108 (29%), Gaps = 26/108 (24%)
Query: 8 YQIFLILDFLYACYIFPPELTNPCQENTCQYGAKCIPSEDGTSYKCECPQECPN----YG 63
Q F+ + L Y F L +P + Q PS Y E N +
Sbjct: 79 VQKFVE-EVLRINYKF---LMSPIKTEQRQ------PSMMTRMYI-EQRDRLYNDNQVFA 127
Query: 64 DHTGSRPVCGSNGVDYKDLCEFQRASCSTKTNLTIKYYGK--CGKWIL 109
+ SR + + ++A + + G GK +
Sbjct: 128 KYNVSRL---------QPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS
HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 27.4 bits (60), Expect = 1.1
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCEC 55
NPC N CQ +C+ S YKC+C
Sbjct: 2 NPCCSNPCQNRGECM-STGFDQYKCDC 27
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 27.3 bits (60), Expect = 1.2
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 7/55 (12%)
Query: 9 QIFLILDFLYACYIFPPELTNPCQENTCQYGA---KCIPS----EDGTSYKCECP 56
+ D + + P N C+ T G C+P+ + C CP
Sbjct: 248 NLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACP 302
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM;
2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 26.9 bits (59), Expect = 1.4
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCEC 55
NPC CQ+ C+ Y+C+C
Sbjct: 3 NPCCYYPCQHQGICVRFGLD-RYQCDC 28
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 25.2 bits (55), Expect = 1.8
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECP 56
+ C G C+ E SY C C
Sbjct: 7 PSSYDGYCLNGGVCMHIESLDSYTCNCV 34
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 26.0 bits (58), Expect = 2.4
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 28 TNPCQENTCQYGAKCIPSEDGTSYKCECP 56
T+ C + C + +C+ + ++CECP
Sbjct: 83 TDECASSPCLHNGRCL--DKINEFQCECP 109
Score = 24.9 bits (55), Expect = 5.6
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECP 56
N C N CQ A C+ ++C C
Sbjct: 46 NECVSNPCQNDATCLDQIGE--FQCICM 71
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 24.0 bits (53), Expect = 3.5
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 29 NPCQENTCQYGAKCIPSEDGT-SYKCECPQ 57
+ C+ N C G C D SY+C CP
Sbjct: 4 DQCESNPCLNGGSCK---DDINSYECWCPF 30
>1ldt_L LDTI, tryptase inhibitor; complex (hydrolase/inhibitor), hydrolase,
inflammation; 1.90A {Hirudo medicinalis} SCOP: g.68.1.1
PDB: 1an1_I 2kmo_A 2kmp_A 2kmq_A 2kmr_A
Length = 46
Score = 24.4 bits (53), Expect = 3.6
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 69 RPVCGSNGVDYKDLCEFQRASCSTKTNLTIKYYGKCGKWIL 109
+PVCGS+G Y + C A C+ ++IK G C IL
Sbjct: 11 KPVCGSDGRTYANSCI---ARCN---GVSIKSEGSCPTGIL 45
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger,
transferase, viral protein; HET: SAM; 2.00A {Sars
coronavirus}
Length = 344
Score = 25.9 bits (56), Expect = 3.6
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 56 PQECPNYGDHTGSRPVCGSNGVDYKDLCEF-QRASCSTKTNLTIKYYG 102
+ NYG++ N Y LC++ + + N+ + ++G
Sbjct: 70 KCDLQNYGENAVIPKGIMMNVAKYTQLCQYLNTLTLAVPYNMRVIHFG 117
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 26.0 bits (56), Expect = 3.7
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 23 FPPELTNPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDL 82
C +TC KC S + C P +C G+ + S ++
Sbjct: 833 SNSTKKESCGYDTCYDWEKC--SASTSKCVCLLPPQCFKGGNQLYCVKMGSSTSEKTLNI 890
Query: 83 CEFQRASCSTKTNLTIKYYGKC 104
CE C+ + I + GKC
Sbjct: 891 CEVGTIRCA-NRKMEILHPGKC 911
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 25.4 bits (56), Expect = 4.0
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECP 56
+ C+ N C G C +D SY+C C
Sbjct: 49 DQCEPNPCLNGGLCK--DDINSYECWCQ 74
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 25.0 bits (54), Expect = 6.0
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECP 56
C + C+ S Y+C CP
Sbjct: 270 CGIDNGGCSH--LCLMSPVKPFYQCACP 295
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2;
lysophospholipase D, autotaxin, ENPP2, lysophosphatidic
acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus
musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A*
2xrg_A* 2xr9_A*
Length = 831
Score = 24.9 bits (53), Expect = 7.5
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 12/51 (23%)
Query: 33 ENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLC 83
+C+ +C ++ C C C +Y C D+ +LC
Sbjct: 20 SGSCK--GRCFELQEVGPPDCRCDNLCKSYSS-------CCH---DFDELC 58
>3uc0_A Envelope protein; dengue antibody membrane fusion, viral
protein-immune system; 2.71A {Dengue virus 4}
Length = 165
Score = 24.4 bits (52), Expect = 10.0
Identities = 7/46 (15%), Positives = 13/46 (28%)
Query: 21 YIFPPELTNPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHT 66
Y + N + + T + P+YG+ T
Sbjct: 55 YTVVVTVHNGDTHAVGNDTSNHGVTAMITPRSPSVEVKLPDYGELT 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.141 0.486
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,709,109
Number of extensions: 87732
Number of successful extensions: 477
Number of sequences better than 10.0: 1
Number of HSP's gapped: 423
Number of HSP's successfully gapped: 200
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)