BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11294
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V53|A Chain A, Crystal Structure Of A Sparc-Collagen Complex
Length = 230
Score = 32.7 bits (73), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 27 LTNPCQENTCQYGAKCIPSEDGTSY-KCECPQECPN-YGDHTGSRPVCGSNGVDYKDLCE 84
L NPCQ + C++G C E+ T C+ P CP G+ VC ++ + C
Sbjct: 3 LANPCQNHHCKHGKVCELDENNTPMCVCQDPTSCPAPIGEF---EKVCSNDNKTFDSSCH 59
Query: 85 FQRASCSTKMLSRGFLLDI-------WIPP 107
F C+ + +G L + +IPP
Sbjct: 60 FFATKCTLEGTKKGHKLHLDYIGPCKYIPP 89
>pdb|3B4V|C Chain C, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|D Chain D, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|G Chain G, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|H Chain H, X-Ray Structure Of Activin In Complex With Fstl3
Length = 237
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 13 ILDFLYACYIFPPELTNPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVC 72
+L FL + P + C C G C G +CEC +C VC
Sbjct: 57 LLGFLGLVHCLP--CKDSCDGVECGPGKAC--RMLGGRPRCECAPDCSGL---PARLQVC 109
Query: 73 GSNGVDYKDLCEFQRASC 90
GS+G Y+D CE + A C
Sbjct: 110 GSDGATYRDECELRAARC 127
>pdb|3SEK|C Chain C, Crystal Structure Of The Myostatin:follistatin-Like 3
Complex
Length = 209
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 13 ILDFLYACYIFPPELTNPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVC 72
+L FL + P + C C G C G +CEC +C VC
Sbjct: 48 LLGFLGLVHCLP--CKDSCDGVECGPGKAC--RMLGGRPRCECAPDCSGL---PARLQVC 100
Query: 73 GSNGVDYKDLCEFQRASC 90
GS+G Y+D CE + A C
Sbjct: 101 GSDGATYRDECELRAARC 118
>pdb|2P6A|D Chain D, The Structure Of The Activin:follistatin 315 Complex
pdb|2P6A|C Chain C, The Structure Of The Activin:follistatin 315 Complex
Length = 315
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 31 CQENTCQYGAKCIPSEDGTSYKCE-CPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRAS 89
C++ C G KC+ +C C + CP D PVC S+ Y C + A+
Sbjct: 216 CEDIQCTGGKKCLWDFKVGRGRCSLCDELCP---DSKSDEPVCASDNATYASECAMKEAA 272
Query: 90 CSTKMLSRGFLLDI 103
CS+ G LL++
Sbjct: 273 CSS-----GVLLEV 281
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 31 CQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASC 90
C++ C + C+ + +Y C + CP + + +CG++GV Y C ++A+C
Sbjct: 139 CRDVFCPGSSTCVVDQTNNAYCVTCNRICPEPA--SSEQYLCGNDGVTYSSACHLRKATC 196
Query: 91 STKMLSRGFLL 101
+L R L
Sbjct: 197 ---LLGRSIGL 204
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 31 CQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASC 90
C+ C G KC ++ +C C +C N T PVCG +G Y++ C +A C
Sbjct: 66 CENVDCGPGKKCRMNKKNKP-RCVCAPDCSNI---TWKGPVCGLDGKTYRNECALLKARC 121
>pdb|2B0U|C Chain C, The Structure Of The Follistatin:activin Complex
pdb|2B0U|D Chain D, The Structure Of The Follistatin:activin Complex
pdb|3HH2|C Chain C, Crystal Structure Of The Myostatin:follistatin 288 Complex
pdb|3HH2|D Chain D, Crystal Structure Of The Myostatin:follistatin 288 Complex
Length = 288
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 31 CQENTCQYGAKCIPSEDGTSYKCE-CPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRAS 89
C++ C G KC+ +C C + CP D PVC S+ Y C + A+
Sbjct: 216 CEDIQCTGGKKCLWDFKVGRGRCSLCDELCP---DSKSDEPVCASDNATYASECAMKEAA 272
Query: 90 CSTKMLSRGFLLDI 103
CS+ G LL++
Sbjct: 273 CSS-----GVLLEV 281
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 31 CQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASC 90
C++ C + C+ + +Y C + CP + + +CG++GV Y C ++A+C
Sbjct: 139 CRDVFCPGSSTCVVDQTNNAYCVTCNRICPEPA--SSEQYLCGNDGVTYSSACHLRKATC 196
Query: 91 STKMLSRGFLL 101
+L R L
Sbjct: 197 ---LLGRSIGL 204
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 31 CQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASC 90
C+ C G KC ++ +C C +C N T PVCG +G Y++ C +A C
Sbjct: 66 CENVDCGPGKKCRMNKKNKP-RCVCAPDCSNI---TWKGPVCGLDGKTYRNECALLKARC 121
>pdb|2KCX|A Chain A, Solution Nmr Structure Of Kazal-1 Domain Of Human
Follistatin-Related Protein 3 (Fstl-3). Northeast
Structural Genomics Target Hr6186a
Length = 74
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 39 GAKCIPSED----GTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASC 90
G +C P + G +CEC +C VCGS+G Y+D CE + A C
Sbjct: 6 GVECGPGKACRMLGGRPRCECAPDCSGLPARL---QVCGSDGATYRDECELRAARC 58
>pdb|2ARP|F Chain F, Activin A In Complex With Fs12 Fragment Of Follistatin
Length = 152
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 31 CQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASC 90
C++ C + C+ + +Y C + CP + + +CG++GV Y C ++A+C
Sbjct: 79 CRDVFCPGSSTCVVDQTNNAYCVTCNRICPE--PSSSEQSLCGNDGVTYSSACHLRKATC 136
Query: 91 STKMLSRGFLL 101
+L R L
Sbjct: 137 ---LLGRSIGL 144
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 31 CQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASC 90
C+ C G KC ++ +C C +C N T PVCG +G Y++ C +A C
Sbjct: 6 CENVDCGPGKKCRMNKKNKP-RCVCAPDCSNI---TWKGPVCGLDGKTYRNECALLKARC 61
>pdb|1BMO|A Chain A, Bm-40, FsEC DOMAIN PAIR
pdb|1BMO|B Chain B, Bm-40, FsEC DOMAIN PAIR
Length = 233
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 12/87 (13%)
Query: 30 PCQENTCQYGAKCIPSEDGTSY-KCECPQECPN-YGDHTGSRPVCGSNGVDYKDLCEFQR 87
PCQ + C++G C E+ T C+ P CP G+ VC ++ + C F
Sbjct: 1 PCQNHHCKHGKVCELDENNTPMCVCQDPTSCPAPIGEF---EKVCSNDNKTFDSSCHFFA 57
Query: 88 ASCSTKMLSRGFLLDI-------WIPP 107
C+ + +G L + +IPP
Sbjct: 58 TKCTLEGTKKGHKLHLDYIGPCKYIPP 84
>pdb|1NUB|A Chain A, Helix C Deletion Mutant Of Bm-40 Fs-Ec Domain Pair
pdb|1NUB|B Chain B, Helix C Deletion Mutant Of Bm-40 Fs-Ec Domain Pair
Length = 229
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 12/87 (13%)
Query: 30 PCQENTCQYGAKCIPSEDGTSY-KCECPQECPN-YGDHTGSRPVCGSNGVDYKDLCEFQR 87
PCQ + C++G C E+ T C+ P CP G+ VC ++ + C F
Sbjct: 5 PCQNHHCKHGKVCELDENNTPMCVCQDPTSCPAPIGEF---EKVCSNDNKTFDSSCHFFA 61
Query: 88 ASCSTKMLSRGFLLDI-------WIPP 107
C+ + +G L + +IPP
Sbjct: 62 TKCTLEGTKKGHKLHLDYIGPCKYIPP 88
>pdb|3TJQ|A Chain A, N-Domain Of Htra1
Length = 140
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 68 SRPVCGSNGVDYKDLCEFQRASCSTKMLSR 97
S PVCGS+ Y +LC+ + AS ++ L R
Sbjct: 97 SEPVCGSDANTYANLCQLRAASRRSERLHR 126
>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6
Length = 410
Score = 28.5 bits (62), Expect = 0.93, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 28 TNPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDY 79
+ CQE++C C+ DG + C+C + S P+C G Y
Sbjct: 185 STTCQEDSCSNQGVCLQQWDG--FSCDCSMT-------SFSGPLCNDPGTTY 227
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 28 TNPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDY 79
+ CQE++C C+ DG + C+C + S P+C G Y
Sbjct: 801 STTCQEDSCSNQGVCLQQWDG--FSCDCSMT-------SFSGPLCNDPGTTY 843
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice
Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice
Inserts
Length = 1245
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 28 TNPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDY 79
+ CQE++C C+ DG + C+C + S P+C G Y
Sbjct: 1017 STTCQEDSCSNQGVCLQQWDG--FSCDCSMT-------SFSGPLCNDPGTTY 1059
>pdb|1Y1B|A Chain A, Solution Structure Of Anemonia Elastase Inhibitor
Length = 48
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 70 PVCGSNGVDYKDLCEFQRASCST 92
PVCGS+G+ Y + C ASC +
Sbjct: 14 PVCGSDGITYGNACMLLGASCRS 36
>pdb|1LR7|A Chain A, Crystal Structure Of Fs1, The Heparin-Binding Domain Of
Follistatin, Complexed With The Heparin Analogue
Sucrose Octasulphate (Sos)
pdb|1LR8|A Chain A, Crystal Structure Of Fs1, The Heparin-Binding Domain Of
Follistatin, Complexed With The Heparin Analogue D-Myo-
Inositol Hexasulphate (Ins6s)
pdb|1LR9|A Chain A, Structure Of Fs1, The Heparin-Binding Domain Of
Follistatin
Length = 74
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 31 CQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASC 90
C+ C G KC ++ +C C +C N T PVCG +G Y++ C +A C
Sbjct: 4 CENVDCGPGKKCRMNKKNKP-RCVCAPDCSNI---TWKGPVCGLDGKTYRNECALLKARC 59
Query: 91 S 91
Sbjct: 60 K 60
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 31 CQENTCQYGAKCIPSEDGTSYKCECPQ 57
C N C+ G C+P S+ CECP
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPD 29
>pdb|1B1X|A Chain A, Structure Of Diferric Mare Lactoferrin At 2.62a Resolution
pdb|1B7Z|A Chain A, Structure Of Oxalate Substituted Diferric Mare Lactoferrin
From Colostrum
pdb|1B7U|A Chain A, Structure Of Mare Apolactoferrin: The N And C Lobes Are In
The Closed Form
pdb|1QJM|A Chain A, Crystal Structure Of A Complex Of Lactoferrin With A
Lanthanide Ion (Sm3+) At 3.4 Anstrom Resolution
pdb|1I6B|A Chain A, Structure Of Equine Apolactoferrin At 3.2 A Resolution
Using Crystals Grown At 303k
pdb|3CR9|A Chain A, Crystal Structure Of The Complex Of Lactoferrin With 6-
(Hydroxymethyl)oxane-2,3,4,5-Tetrol At 3.49 A Resolution
Length = 689
Score = 25.0 bits (53), Expect = 9.9, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 17/60 (28%)
Query: 18 YACYIFPPELTNPCQENTCQY-GAKCIPSEDGTSY-------------KCECPQECPNYG 63
Y + PPE P Q+ + A C+P DG Y KC C + P +G
Sbjct: 135 YLNWTGPPE---PLQKAVANFFSASCVPCADGKQYPNLCRLCAGTEADKCACSSQEPYFG 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.491
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,791,227
Number of Sequences: 62578
Number of extensions: 154268
Number of successful extensions: 349
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 314
Number of HSP's gapped (non-prelim): 54
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)