RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11294
(111 letters)
>gnl|CDD|197624 smart00280, KAZAL, Kazal type serine protease inhibitors. Kazal
type serine protease inhibitors and follistatin-like
domains.
Length = 46
Score = 38.8 bits (91), Expect = 2e-05
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 54 ECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASCSTK 93
+CP+ CP PVCGS+GV Y + C +A+C +
Sbjct: 1 DCPEACPRE-----YDPVCGSDGVTYSNECHLCKAACESG 35
>gnl|CDD|238649 cd01328, FSL_SPARC, Follistatin-like SPARC (secreted protein,
acidic, and rich in cysteines) domain;
SPARC/BM-40/osteonectin is a multifunctional
glycoprotein which modulates cellular interaction with
the extracellular matrix by its binding to structural
matrix proteins such as collagen and vitronectin. The
protein it composed of an N-terminal acidic region, a
follistatin (FS) domain and an EF-hand calcium binding
domain. The FS domain consists of an N-terminal beta
hairpin (FOLN/EGF-like domain) and a small hydrophobic
core of alpha/beta structure (Kazal domain) and has
five disulfide bonds and a conserved N-glycosylation
site. The FSL_SPARC domain is a member of the
superfamily of kazal-like proteinase inhibitors and
follistatin-like proteins.
Length = 86
Score = 34.0 bits (78), Expect = 0.002
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 30 PCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRAS 89
PC+ + C G C ++ T KC C CP D R VC ++ + CE R
Sbjct: 1 PCENHHCGAGKVCEVDDENTP-KCVCIDPCPEEVDD--RRKVCTNDNETFDSDCELYRTR 57
Query: 90 CSTKMLSRG 98
C K +G
Sbjct: 58 CLCKGGKKG 66
>gnl|CDD|238052 cd00104, KAZAL_FS, Kazal type serine protease inhibitors and
follistatin-like domains. Kazal inhibitors inhibit
serine proteases, such as, trypsin, chyomotrypsin,
avian ovomucoids, and elastases. The inhibitory domain
has one reactive site peptide bond, which serves the
cognate enzyme as substrate. The reactive site peptide
bond is a combining loop which has an identical
conformation in all Kazal inhibitors and in all
enzyme/inhibitor complexes. These Kazal domains (small
hydrophobic core of alpha/beta structure with 3 to 4
disulfide bonds) often occur in tandem arrays. Similar
domains are also present in follistatin (FS) and
follistatin-like family members, which play an
important role in tissue specific regulation. The FS
domain consists of an N-terminal beta hairpin
(FOLN/EGF-like domain) and a Kazal-like domain and has
five disulfide bonds. Although the Kazal-like FS
substructure is similar to Kazal proteinase inhibitors,
no FS domain has yet been shown to be a proteinase
inhibitor. Follistatin-like family members include
SPARC, also known as, BM-40 or osteonectin, the Gallus
gallus Flik protein, as well as, agrin which has a long
array of FS domains. The kazal-type inhibitor domain
has also been detected in an extracellular loop region
of solute carrier 21 (SLC21) family members (organic
anion transporters) , which may regulate the
specificity of anion uptake. The distant homolog,
Ascidian trypsin inhibitor, is included in this CD.
Length = 41
Score = 33.0 bits (76), Expect = 0.003
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 69 RPVCGSNGVDYKDLCEFQRASCSTK 93
PVCGS+G Y + C A+C +
Sbjct: 6 DPVCGSDGKTYSNECHLGCAACRSG 30
>gnl|CDD|191798 pfam07648, Kazal_2, Kazal-type serine protease inhibitor domain.
Usually indicative of serine protease inhibitors.
However, kazal-like domains are also seen in the
extracellular part of agrins, which are not known to be
protease inhibitors. Kazal domains often occur in
tandem arrays. Small alpha+beta fold containing three
disulphides.
Length = 42
Score = 29.6 bits (67), Expect = 0.045
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 70 PVCGSNGVDYKDLCEFQRASCSTK 93
PVCGS+G Y + C ASC
Sbjct: 8 PVCGSDGKTYSNKCALCCASCLLG 31
>gnl|CDD|225103 COG2192, COG2192, Predicted carbamoyl transferase, NodU family
[Posttranslational modification, protein turnover,
chaperones].
Length = 555
Score = 30.0 bits (68), Expect = 0.20
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 65 HTGSRPVCGSNGVDYKDLCEFQRASCSTKMLSRGFLLDIWIPPSP 109
TG + + GV + K+L RG D+++ P+
Sbjct: 283 ETGEDNLALAGGV-------ALNVKANGKLLRRGLFEDLFVQPAM 320
>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a
large number of membrane-bound and extracellular
(mostly animal) proteins. Many of these proteins
require calcium for their biological function and
calcium-binding sites have been found to be located at
the N-terminus of particular EGF-like domains;
calcium-binding may be crucial for numerous
protein-protein interactions. Six conserved core
cysteines form three disulfide bridges as in non
calcium-binding EGF domains, whose structures are very
similar. EGF_CA can be found in tandem repeat
arrangements.
Length = 38
Score = 25.3 bits (56), Expect = 1.6
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 29 NPCQE-NTCQYGAKCIPSEDGTSYKCECP 56
+ C N CQ G C+ + SY+C CP
Sbjct: 3 DECASGNPCQNGGTCVNTVG--SYRCSCP 29
>gnl|CDD|232985 TIGR00463, gltX_arch, glutamyl-tRNA synthetase, archaeal and
eukaryotic family. The glutamyl-tRNA synthetases of the
eukaryotic cytosol and of the Archaea are more similar
to glutaminyl-tRNA synthetases than to bacterial
glutamyl-tRNA synthetases. This model models just the
eukaryotic cytosolic and archaeal forms of the enzyme.
In some eukaryotes, the glutamyl-tRNA synthetase is part
of a longer, multifunctional aminoacyl-tRNA ligase. In
many species, the charging of tRNA(gln) proceeds first
through misacylation with Glu and then transamidation.
For this reason, glutamyl-tRNA synthetases, including
all known archaeal enzymes (as of 2010) may act on both
tRNA(gln) and tRNA(glu) [Protein synthesis, tRNA
aminoacylation].
Length = 556
Score = 27.5 bits (61), Expect = 1.8
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 37 QYGAKCIPSEDGTSYKCECPQE 58
Y K I E G +Y C+C E
Sbjct: 174 DYTRKLI--EMGKAYVCDCRPE 193
>gnl|CDD|200959 pfam00050, Kazal_1, Kazal-type serine protease inhibitor domain.
Usually indicative of serine protease inhibitors.
However, kazal-like domains are also seen in the
extracellular part of agrins, which are not known to be
protease inhibitors. Kazal domains often occur in
tandem arrays. Small alpha+beta fold containing three
disulphides. Alignment also includes a single domain
from transporters in the OATP/PGT family.
Length = 48
Score = 25.0 bits (55), Expect = 3.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 69 RPVCGSNGVDYKDLCEF 85
PVCGS+GV Y + CE
Sbjct: 13 DPVCGSDGVTYSNECEL 29
>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain.
Length = 39
Score = 24.5 bits (54), Expect = 4.0
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 29 NPCQE-NTCQYGAKCIPSEDGTSYKCECP 56
+ C N CQ G C+ + SY+CECP
Sbjct: 3 DECASGNPCQNGGTCVNTVG--SYRCECP 29
>gnl|CDD|148805 pfam07406, NICE-3, NICE-3 protein. This family consists of
several eukaryotic NICE-3 and related proteins. The
gene coding for NICE-3 is part of the epidermal
differentiation complex (EDC) which comprises a large
number of genes that are of crucial importance for the
maturation of the human epidermis. The function of
NICE-3 is unknown.
Length = 186
Score = 25.1 bits (55), Expect = 7.5
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 45 SEDGTSYKCECPQECPNY 62
S DG + + Q P Y
Sbjct: 80 STDGDKFISQPDQNLPPY 97
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.141 0.491
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,345,930
Number of extensions: 402262
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 27
Length of query: 111
Length of database: 10,937,602
Length adjustment: 75
Effective length of query: 36
Effective length of database: 7,611,052
Effective search space: 273997872
Effective search space used: 273997872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.2 bits)