RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11294
(111 letters)
>1lr7_A Follistatin, FS1; heparin-binding, cystine-rich, sucrose
octasulphate, hormone/growth factor complex; HET: SO4;
1.50A {Rattus norvegicus} SCOP: g.3.11.3 g.68.1.1 PDB:
1lr8_A* 1lr9_A
Length = 74
Score = 53.0 bits (127), Expect = 6e-11
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRA 88
C+ C G KC ++ +C C +C N T PVCG +G Y++ C +A
Sbjct: 2 ETCENVDCGPGKKCRMNKKNKP-RCVCAPDCSNI---TWKGPVCGLDGKTYRNECALLKA 57
Query: 89 SCSTK 93
C +
Sbjct: 58 RCKEQ 62
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 50.3 bits (119), Expect = 7e-09
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRA 88
PCQ + C++G C E+ T C C VC ++ + C F
Sbjct: 4 APCQNHHCKHGKVCELDENNTP-MCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFAT 62
Query: 89 SCSTKMLSRG 98
C+ + +G
Sbjct: 63 KCTLEGTKKG 72
>3hh2_C Follistatin; protein-protein complex, TB domain, cystine knot
motif, TGF- fold, disulfide linked dimer, CLE PAIR of
basic residues, cytokine; HET: CIT; 2.15A {Homo sapiens}
PDB: 2b0u_C* 2p6a_D
Length = 288
Score = 45.8 bits (107), Expect = 4e-07
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 6/88 (6%)
Query: 7 CYQIFLILDFLYACYIFPPELTNPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHT 66
++ A P + C+ C G KC ++ +C C +C N
Sbjct: 44 NTLFKWMIFNGGAPNCIPCK--ETCENVDCGPGKKCRMNKKNK-PRCVCAPDCSNITWK- 99
Query: 67 GSRPVCGSNGVDYKDLCEFQRASCSTKM 94
PVCG +G Y++ C +A C +
Sbjct: 100 --GPVCGLDGKTYRNECALLKARCKEQP 125
Score = 37.3 bits (85), Expect = 3e-04
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 26 ELTNPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEF 85
C++ C + C+ + +Y C + CP + +CG++GV Y C
Sbjct: 134 RCKKTCRDVFCPGSSTCVVDQTNNAYCVTCNRICPEPASS--EQYLCGNDGVTYSSACHL 191
Query: 86 QRASCSTK 93
++A+C
Sbjct: 192 RKATCLLG 199
Score = 35.8 bits (81), Expect = 0.001
Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 20 CYIFPPELTNPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDY 79
Y C++ C G KC+ D + C D PVC S+ Y
Sbjct: 205 AYEGKCIKAKSCEDIQCTGGKKCL--WDFKVGRGRCSLCDELCPDSKSDEPVCASDNATY 262
Query: 80 KDLCEFQRASCSTK 93
C + A+CS+
Sbjct: 263 ASECAMKEAACSSG 276
Score = 27.3 bits (59), Expect = 1.1
Identities = 6/48 (12%), Positives = 12/48 (25%), Gaps = 6/48 (12%)
Query: 45 SEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASCST 92
+ +C+ + S+ C S G E +
Sbjct: 5 LRQAKNGRCQVLYKTE------LSKEECCSTGRLSTSWTEEDVNDNTL 46
>2arp_F Follistatin; cystine knot, disulfide rich, EGF domain, kazal
domain, PROT complex, hormone-growth factor complex;
HET: 1PG; 2.00A {Rattus norvegicus}
Length = 152
Score = 44.1 bits (103), Expect = 7e-07
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRA 88
C+ C G KC ++ +C C +C N T PVCG +G Y++ C +A
Sbjct: 4 ETCENVDCGPGKKCRMNKKNKP-RCVCAPDCSNI---TWKGPVCGLDGKTYRNECALLKA 59
Query: 89 SCSTKM 94
C +
Sbjct: 60 RCKEQP 65
Score = 39.9 bits (92), Expect = 3e-05
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRA 88
C++ C + C+ + +Y C + CP + +CG++GV Y C ++A
Sbjct: 77 KTCRDVFCPGSSTCVVDQTNNAYCVTCNRICPEPSSS--EQSLCGNDGVTYSSACHLRKA 134
Query: 89 SCSTK 93
+C
Sbjct: 135 TCLLG 139
>3b4v_C Follistatin-like 3; ligand-inhibitor signalling complex, cleavage
on PAIR of BAS residues, glycoprotein, growth factor,
hormone, secreted; HET: NAG; 2.48A {Homo sapiens}
Length = 237
Score = 43.4 bits (101), Expect = 2e-06
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRA 88
+ C C G C G +CEC +C VCGS+G Y+D CE + A
Sbjct: 71 DSCDGVECGPGKACR--MLGGRPRCECAPDCSG---LPARLQVCGSDGATYRDECELRAA 125
Query: 89 SCSTK 93
C
Sbjct: 126 RCRGH 130
Score = 38.7 bits (89), Expect = 1e-04
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 28 TNPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQR 87
C+ C C+ + G+++ C + P + + +CG+N V Y C ++
Sbjct: 142 RKSCEHVVCPRPQSCVVDQTGSAH-CVVCRAAPCPVPSSPGQELCGNNNVTYISSCHMRQ 200
Query: 88 ASCSTK 93
A+C
Sbjct: 201 ATCFLG 206
Score = 28.3 bits (62), Expect = 0.42
Identities = 5/41 (12%), Positives = 9/41 (21%)
Query: 58 ECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASCSTKMLSRG 98
C +R C ++G +L
Sbjct: 21 TCSLVLQTDVTRAECCASGNIDTAWSNLTHPGNKINLLGFL 61
>1y1b_A Elastase inhibitor; non-classical, kazal-type, protease
inhibitor, CSH motif, hydrolase inhibitor; NMR
{Synthetic} PDB: 1y1c_A
Length = 48
Score = 40.2 bits (94), Expect = 3e-06
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 52 KCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASCSTK 93
K +CP C D PVCGS+G+ Y + C ASC +
Sbjct: 1 KPDCPLICTMQYD-----PVCGSDGITYGNACMLLGASCRSD 37
>3sek_C Follistatin-related protein 3; protein-protein complex, TB domain,
cystine knot motif, TGF- fold, disulfide linked dimer,
follistatin domain (FSD); HET: NAG; 2.40A {Homo sapiens}
PDB: 2kcx_A
Length = 209
Score = 43.0 bits (100), Expect = 3e-06
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRA 88
+ C C G C +CEC +C VCGS+G Y+D CE + A
Sbjct: 62 DSCDGVECGPGKACRMLGGRP--RCECAPDCSGLPAR---LQVCGSDGATYRDECELRAA 116
Query: 89 SCSTK 93
C
Sbjct: 117 RCRGH 121
Score = 36.8 bits (84), Expect = 5e-04
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRA 88
C+ C C+ + G+ C + P + + +CG+N V Y C ++A
Sbjct: 134 KSCEHVVCPRPQSCVVDQTGS-AHCVVCRAAPCPVPSSPGQELCGNNNVTYISSCHMRQA 192
Query: 89 SCSTK 93
+C
Sbjct: 193 TCFLG 197
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 35.4 bits (81), Expect = 0.002
Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 28 TNPCQENTCQYGAKCIPSEDGTSYKCECPQ---ECPNYGDHTGSRPVCGSNGVDYKDLCE 84
+ CQE++C C+ DG + C+C P D + G
Sbjct: 185 STTCQEDSCSNQGVCLQQWDG--FSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPP 242
Query: 85 FQRASCSTKMLSRGF 99
R S L+ GF
Sbjct: 243 NDRPSTRADRLAIGF 257
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 35.2 bits (80), Expect = 0.002
Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 5/78 (6%)
Query: 25 PELTNPCQENTCQYGAKCIPSEDGTSYKCECPQ---ECPNYGDHTGSRPVCGSNGVDYKD 81
+ CQE++C C+ DG + C+C P D + G
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDG--FSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYK 1071
Query: 82 LCEFQRASCSTKMLSRGF 99
R S L+ GF
Sbjct: 1072 WPPNDRPSTRADRLAIGF 1089
Score = 33.3 bits (75), Expect = 0.011
Identities = 8/37 (21%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 20 CYIFPPELTNPCQENTCQYGAKCIPSEDGTSYKCECP 56
P E + C G C +D C+C
Sbjct: 182 GGGSPCEAGEEGEGGVCLNGGVCSVVDDQ--AVCDCS 216
Score = 31.4 bits (70), Expect = 0.054
Identities = 10/49 (20%), Positives = 14/49 (28%), Gaps = 2/49 (4%)
Query: 28 TNPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNG 76
PC N C+ C + Y C+C V +G
Sbjct: 619 AKPCLSNPCKNNGMCRDGWNR--YVCDCSGTGYLGRSCEREATVLSYDG 665
>2f3c_I Thrombin inhibitor infestin; serine protease - inhibitor complex,
kazal-type domain, hydrolase/hydrolase inhibitor
complex; 2.50A {Triatoma infestans} SCOP: g.68.1.1 PDB:
1kma_A
Length = 55
Score = 32.2 bits (73), Expect = 0.004
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 9/41 (21%)
Query: 53 CECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASCSTK 93
C CP+ VCGS+G Y + C A K
Sbjct: 6 CACPRV---------LHRVCGSDGNTYSNPCTLDCAKHEGK 37
>1uvf_A Serine proteinase inhibitor kazal type 5; trypsin inhibitor,
protease; NMR {Homo sapiens}
Length = 61
Score = 31.4 bits (71), Expect = 0.008
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 5/42 (11%)
Query: 52 KCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASCSTK 93
CP +PVCG +G Y + C + +
Sbjct: 13 LPRIGYLCPKD-----LKPVCGDDGQTYNNPCMLCHENLIRQ 49
>1tbr_R RHODNIIN; complex (serine protease-inhibitor), kazal-type
inhibitor, T complex (serine protease-inhibitor)
complex; 2.60A {Rhodnius prolixus} SCOP: g.68.1.1
g.68.1.1 PDB: 1tbq_R
Length = 103
Score = 32.0 bits (72), Expect = 0.011
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 29 NPCQ--ENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQ 86
NPC + + DG E C +PVCGS+ + Y + C +
Sbjct: 25 NPCTLNCAKFNGKPELVKVHDGPCEPDEDEDVCQECDGDE-YKPVCGSDDITYDNNCRLE 83
Query: 87 RASCSTK 93
AS S+
Sbjct: 84 CASISSS 90
Score = 31.7 bits (71), Expect = 0.016
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 53 CECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASCSTK 93
P CP+ VCGS+G Y + C A + K
Sbjct: 2 GGEPCACPHALH-----RVCGSDGETYSNPCTLNCAKFNGK 37
>1yu6_C Ovomucoid; protein proteinase inhibitor, protease, hydrolase; 1.55A
{Meleagris gallopavo} SCOP: g.68.1.1 PDB: 1z7k_B*
Length = 185
Score = 31.9 bits (71), Expect = 0.021
Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 5/76 (6%)
Query: 19 ACYIFPPELTNPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVD 78
E C + TS + + C + VCG++GV
Sbjct: 46 NIEYGTNISKEHDGECREAVPMDCSRYPNTTSEEGKVMILCNKALNP-----VCGTDGVT 100
Query: 79 YKDLCEFQRASCSTKM 94
Y + C +
Sbjct: 101 YDNECVLCAHNLEQGT 116
Score = 31.1 bits (69), Expect = 0.038
Identities = 12/63 (19%), Positives = 19/63 (30%)
Query: 31 CQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASC 90
++ T + E P RP+CGS+ Y + C F A
Sbjct: 112 LEQGTSVGKKHDGECRKELAAVSVDCSEYPKPACTLEYRPLCGSDNKTYGNKCNFCNAVV 171
Query: 91 STK 93
+
Sbjct: 172 ESN 174
Score = 28.1 bits (61), Expect = 0.51
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 41 KCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASC 90
C + T+ + + C RP+CG++GV + C +
Sbjct: 4 DCSRFPNTTNEEGKDVLVCT-----EDLRPICGTDGVTH-SECLLCAYNI 47
>1pce_A PEC-60; proteinase inhibitor(kazal type); NMR {Sus scrofa} SCOP:
g.68.1.1
Length = 60
Score = 30.2 bits (68), Expect = 0.025
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 52 KCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASCSTK 93
CE E P+ PVCG++GV Y+ C+ A K
Sbjct: 10 ICEHMTESPDCSRI--YDPVCGTDGVTYESECKLCLARIENK 49
>1uvg_A Serine proteinase inhibitor kazal type 5; trypsin inhibitor,
protease; NMR {Homo sapiens}
Length = 78
Score = 30.1 bits (67), Expect = 0.046
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 5/41 (12%)
Query: 53 CECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASCSTK 93
CP +PVCG +G Y + C + +
Sbjct: 14 PRIGYLCPKD-----LKPVCGDDGQTYNNPCMLCHENLIRQ 49
>2erw_A Serine protease inhibitor infestin; kazal type domain, blood
clotting, hydrolase inhibitor; 1.40A {Triatoma
infestans} SCOP: g.68.1.1
Length = 56
Score = 29.1 bits (65), Expect = 0.060
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 52 KCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASCS 91
+ P C PVCGS+G Y + C A+ +
Sbjct: 1 EVRNPCACFRN-----YVPVCGSDGKTYGNPCMLNCAAQT 35
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 29.8 bits (67), Expect = 0.065
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECP 56
C E C G C + + + C+CP
Sbjct: 49 KSCSEPRCFNGGTCQQALYFSDFVCQCP 76
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 30.4 bits (69), Expect = 0.079
Identities = 8/28 (28%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECP 56
+PC C + C S Y C C
Sbjct: 6 SPCISQPCLHNGSCQDSIW--GYTCTCS 31
>3qtl_D Kazal-type serine protease inhibitor SPI-1; serine protease
-kazal type serine protease inhibitor comple hydrolase
inhibitor; 2.60A {Carcinoscorpius rotundicauda}
Length = 75
Score = 29.1 bits (65), Expect = 0.087
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 69 RPVCGSNGVDYKDLCEFQRASCSTK 93
+PVCG+NG Y + C +A
Sbjct: 8 KPVCGANGEVYDNECFLNKAGIEPA 32
>2leo_A Serine protease inhibitor kazal-type 7; esophageal cancer-related
gene 2, hydrol inhibitor; NMR {Homo sapiens}
Length = 66
Score = 28.8 bits (64), Expect = 0.095
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 69 RPVCGSNGVDYKDLCEFQRASCSTK 93
PVCGS+ + Y + C S +
Sbjct: 31 LPVCGSDYITYGNECHLCTESLKSN 55
>1r0r_I Ovomucoid, omtky3; high resolution, serine protease, protein
inhibitor, hydrolase; 1.10A {Meleagris gallopavo} SCOP:
g.68.1.1 PDB: 1sgr_I 2gkr_I 1cho_I 1omt_A 1omu_A
1ppf_I* 1tur_A 1tus_A 3sgb_I 2ovo_A 4ovo_A 1iy5_A
1cso_I 1ct4_I 2sgf_I 2gkt_I 2gkv_A 2nu0_I 1m8b_A 1m8c_A
...
Length = 51
Score = 28.3 bits (63), Expect = 0.11
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 58 ECPNYGDHTGSR---PVCGSNGVDYKDLCEFQRASCSTK 93
+C Y + P+CGS+ Y + C F A +
Sbjct: 2 DCSEYPKPACTLEYRPLCGSDNKTYGNKCNFCNAVVESN 40
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular
MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 29.3 bits (66), Expect = 0.15
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 30 PCQENTCQYGAKCIPSEDGTSYKCECP 56
C N C+ G C+P S+ CECP
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECP 28
Score = 26.6 bits (59), Expect = 1.3
Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 28 TNPCQENTCQYGAKCIPSEDGT-----SYKCECP 56
PC N C G C SE Y C+CP
Sbjct: 52 AGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCP 85
Score = 25.8 bits (57), Expect = 2.3
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECP 56
N C+ C+ G C + +Y CECP
Sbjct: 98 NECEVEPCKNGGICT--DLVANYSCECP 123
>2xrc_A Human complement factor I; immune system, hydrolase,
conglutinogen activating factor, S protease, complement
system; HET: NAG; 2.69A {Homo sapiens}
Length = 565
Score = 29.5 bits (66), Expect = 0.20
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 30 PCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRAS 89
C + CQ +CI +GT C+ P +CP G VC +N + C+ +
Sbjct: 24 SCDKVFCQPWQRCI---EGT-CVCKLPYQCPKNGT-----AVCATNRRSFPTYCQQKSLE 74
Query: 90 CSTK 93
C
Sbjct: 75 CLHP 78
>1cgj_I Pancreatic secretory trypsin inhibitor (kazal type) variant 4;
serine protease/inhibitor complex; 2.30A {Homo sapiens}
SCOP: g.68.1.1
Length = 56
Score = 27.5 bits (61), Expect = 0.22
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 69 RPVCGSNGVDYKDLCEFQRASCSTK 93
RPVCG++G Y + C + +
Sbjct: 21 RPVCGTDGDTYPNECVLCFENRKRQ 45
>2jxd_A Serine protease inhibitor kazal-type 2; anti-parallel beta sheet,
beta-bulge, disulfide bond, alpha helix, pyrrolidone
carboxylic acid, secreted; NMR {Homo sapiens}
Length = 62
Score = 27.6 bits (61), Expect = 0.26
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 69 RPVCGSNGVDYKDLCEFQRASCSTK 93
PVCGS+ Y + C
Sbjct: 27 NPVCGSDMSTYANECTLCMKIREGG 51
>3p5b_L Low density lipoprotein receptor variant; B-propellor,
convertase, hydrolase-lipid binding P complex; 3.30A
{Homo sapiens} PDB: 3p5c_L
Length = 400
Score = 28.7 bits (63), Expect = 0.34
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHT 66
N C +N C + G Y+C CP
Sbjct: 1 NECLDNNGGCSHVCNDLKIG--YECLCPDGFQLVAQRR 36
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens}
PDB: 2rhp_A*
Length = 634
Score = 28.4 bits (63), Expect = 0.47
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 28 TNPCQENTCQYGAKCIPSEDGTSYKC-ECP 56
+ C N C GA+C DG S+ C CP
Sbjct: 3 PDGCLSNPCFPGAQCSSFPDG-SWSCGFCP 31
>1bus_A Proteinase inhibitor IIA; HET: PCA; NMR {Bos taurus} SCOP:
g.68.1.1 PDB: 2bus_A*
Length = 57
Score = 26.3 bits (58), Expect = 0.71
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 9/46 (19%)
Query: 58 ECPNYGDHTG-----SRPVCGSNGVDYKDLCEFQRASCSTKMLSRG 98
+C + D S P CGSNG Y + C F C M S G
Sbjct: 6 DCAEFKDPKVYCTRESNPHCGSNGETYGNKCAF----CKAVMKSGG 47
>3tjq_A Serine protease HTRA1; hydrolase; 2.00A {Homo sapiens}
Length = 140
Score = 27.2 bits (59), Expect = 0.85
Identities = 16/66 (24%), Positives = 27/66 (40%)
Query: 35 TCQYGAKCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLCEFQRASCSTKM 94
C G +C+ + + S PVCGS+ Y +LC+ + AS ++
Sbjct: 64 PCGEGLQCVVPFGVPASATVRRRAQAGLCVCASSEPVCGSDANTYANLCQLRAASRRSER 123
Query: 95 LSRGFL 100
L R +
Sbjct: 124 LHRPPV 129
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 27.3 bits (60), Expect = 0.94
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 7/55 (12%)
Query: 9 QIFLILDFLYACYIFPPELTNPCQENTCQYGA---KCIPS----EDGTSYKCECP 56
+ D + + P N C+ T G C+P+ + C CP
Sbjct: 248 NLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACP 302
>1tgs_I Pancreatic secretory trypsin inhibitor (kazal type); complex
(proteinase/inhibitor); 1.80A {Sus scrofa} SCOP:
g.68.1.1 PDB: 1cgi_I 1hpt_A
Length = 56
Score = 26.0 bits (57), Expect = 1.1
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 69 RPVCGSNGVDYKDLCEFQRASCSTK 93
PVCG++G+ Y + C + +
Sbjct: 21 NPVCGTDGITYSNECVLCSENKKRQ 45
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 25.5 bits (56), Expect = 1.2
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECP 56
+ C G C+ E SY C C
Sbjct: 7 PSSYDGYCLNGGVCMHIESLDSYTCNCV 34
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 26.8 bits (60), Expect = 1.3
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 28 TNPCQENTCQYGAKCIPSEDGTSYKCECP 56
T+ C + C + +C+ + ++CECP
Sbjct: 83 TDECASSPCLHNGRCL--DKINEFQCECP 109
Score = 25.6 bits (57), Expect = 3.1
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECP 56
N C N CQ A C+ ++C C
Sbjct: 46 NECVSNPCQNDATCLDQIGE--FQCICM 71
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 24.7 bits (55), Expect = 1.7
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 29 NPCQENTCQYGAKCIPSEDGT-SYKCECPQ 57
+ C+ N C G C D SY+C CP
Sbjct: 4 DQCESNPCLNGGSCK---DDINSYECWCPF 30
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 26.2 bits (58), Expect = 1.7
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECP 56
+ C+ N C G C +D SY+C C
Sbjct: 49 DQCEPNPCLNGGLCK--DDINSYECWCQ 74
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS
HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 26.6 bits (58), Expect = 1.8
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCEC 55
NPC N CQ +C+ S YKC+C
Sbjct: 2 NPCCSNPCQNRGECM-STGFDQYKCDC 27
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 26.4 bits (57), Expect = 2.3
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Query: 23 FPPELTNPCQENTCQYGAKCIPSEDGTSYKCEC--PQECPNYGDHTGSRPVCGSNGVDYK 80
C +TC KC ++ KC C P +C G+ + S
Sbjct: 833 SNSTKKESCGYDTCYDWEKC----SASTSKCVCLLPPQCFKGGNQLYCVKMGSSTSEKTL 888
Query: 81 DLCEFQRASCS 91
++CE C+
Sbjct: 889 NICEVGTIRCA 899
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM;
2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 26.2 bits (57), Expect = 2.6
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCEC 55
NPC CQ+ C+ Y+C+C
Sbjct: 3 NPCCYYPCQHQGICVRFGLD-RYQCDC 28
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD,
oxidoreductase, structural genomics; HET: NAD; 2.00A
{Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Length = 334
Score = 25.9 bits (57), Expect = 3.7
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 64 DHTGSRPVCGSNGVDYKDLCEFQRASCSTKMLSR 97
D V +N + SC+T L R
Sbjct: 115 DVAEVSFVAQANYEAALGKNYVRVVSCNTTGLVR 148
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 25.4 bits (55), Expect = 5.5
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 29 NPCQENTCQYGAKCIPSEDGTSYKCECP 56
C + C+ S Y+C CP
Sbjct: 270 CGIDNGGCSH--LCLMSPVKPFYQCACP 295
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger,
transferase, viral protein; HET: SAM; 2.00A {Sars
coronavirus}
Length = 344
Score = 25.1 bits (54), Expect = 6.8
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 56 PQECPNYGDHTGSRPVCGSNGVDYKDLCEF 85
+ NYG++ N Y LC++
Sbjct: 70 KCDLQNYGENAVIPKGIMMNVAKYTQLCQY 99
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding,
RNA binding protein; 2.10A {Saccharomyces cerevisiae}
SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Length = 400
Score = 24.8 bits (55), Expect = 8.2
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 93 KMLSRGFLLDI 103
KMLSR F I
Sbjct: 174 KMLSRDFKTII 184
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 24.6 bits (52), Expect = 8.7
Identities = 8/29 (27%), Positives = 9/29 (31%)
Query: 47 DGTSYKCECPQECPNYGDHTGSRPVCGSN 75
DG CP C +GD C
Sbjct: 186 DGVYISEPCPSYCSGHGDCISGVCFCDLG 214
>3uc0_A Envelope protein; dengue antibody membrane fusion, viral
protein-immune system; 2.71A {Dengue virus 4}
Length = 165
Score = 24.4 bits (52), Expect = 9.0
Identities = 7/46 (15%), Positives = 13/46 (28%)
Query: 21 YIFPPELTNPCQENTCQYGAKCIPSEDGTSYKCECPQECPNYGDHT 66
Y + N + + T + P+YG+ T
Sbjct: 55 YTVVVTVHNGDTHAVGNDTSNHGVTAMITPRSPSVEVKLPDYGELT 100
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2;
lysophospholipase D, autotaxin, ENPP2, lysophosphatidic
acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus
musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A*
2xrg_A* 2xr9_A*
Length = 831
Score = 24.5 bits (52), Expect = 9.6
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 10/43 (23%)
Query: 41 KCIPSEDGTSYKCECPQECPNYGDHTGSRPVCGSNGVDYKDLC 83
+C ++ C C C +Y C D+ +LC
Sbjct: 26 RCFELQEVGPPDCRCDNLCKSYSS-------CCH---DFDELC 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.491
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,730,607
Number of extensions: 88680
Number of successful extensions: 479
Number of sequences better than 10.0: 1
Number of HSP's gapped: 429
Number of HSP's successfully gapped: 199
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.5 bits)